Skip to main content
PLOS One logoLink to PLOS One
. 2020 Sep 2;15(9):e0238004. doi: 10.1371/journal.pone.0238004

Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska

Brian Houseman 1,*,#, Roger Ruess 1,#, Teresa Hollingsworth 2,#, Dave Verbyla 3,
Editor: RunGuo Zang4
PMCID: PMC7467271  PMID: 32877417

Abstract

Fire severity affects both ecosystem N-loss and post-fire N-balance. Climate change is altering the fire regime of interior Alaska, although the effects on Siberian alder (Alnus viridis ssp. fruticosa) annual N-fixation input (kg N ha-1 yr-1) and ecosystem N-balance are largely unknown. We established 263 study plots across two burn scars within the Yukon-Tanana Uplands ecoregion of interior Alaska. Siberian alder N-input was quantified by post-fire age, fire severity, and stand type. We modeled the components of Siberian alder N-input using environmental variables and fire severity within and across burn scars and estimated post-fire N-balance using N-loss (volatilized N) and N-gain [biological N-fixation and atmospheric deposition]. Mean nodule-level N-fixation rate was 70% higher 11-years post-fire (12.88 ± 1.18 μmol N g-1 hr-1) than 40-years post-fire (7.58 ± 0.59 μmol N g-1 hr-1). Structural equation modeling indicated that fire severity had a negative effect on Siberian alder density, but a positive effect on live nodule biomass (g nodule m-2 plant-1). Post-fire Siberian alder N-input was highest in 11-year old moderately burned deciduous stands (11.53 ± 0.22 kg N ha-1 yr-1), and lowest in 11-year old stands that converted from black spruce to deciduous dominance after severe fire (0.06 ± 0.003 kg N ha-1 yr-1). Over a 138-year fire return interval, N-gains in converted black spruce stands are estimated to offset 15% of volatilized N, whereas N-gains in burned deciduous stands likely exceed volatilized N by an order of magnitude. High Siberian alder density and nodule biomass drives N-input in burned deciduous stands, while low N-fixer density (including Siberian alder) limits N-input in high severity black spruce stands not underlain by permafrost. A severe fire regime that converts black spruce stands to deciduous dominance without alder recruitment may induce progressive N-losses which alter boreal forest ecosystem patterns and processes.

Introduction

Alder (Alnus spp.) forms a symbiotic relationship with the nitrogen-fixing Frankia bacteria resulting in significant implications for N cycling in post-disturbance ecosystems throughout interior Alaska and elsewhere in the boreal forest [14]. Annual stand-level alder N-fixation input can exceed 100 kg N ha-1 yr-1, leading to substantial increases to ecosystem N pools in primary succession on floodplains [4,5] and recently deglaciated uplands [68], as well as some post-fire stand types of boreal forest uplands [2,4,9]. Alder N-fixation input is associated with altered biogeochemical patterns such as soil acidification, increased N cycling and availability, and elevated aquatic productivity [1012]. However, the ecosystem consequences of Siberian alder (A. viridis ssp. fruticosa) N-fixation input after fire disturbance in black spruce (Picea mariana) forests of Alaska are poorly understood.

Climate warming in interior Alaska over the past 60 years [13] has increased the frequency, size, and severity of wildfires [14]. This change in fire regime is linked to a shift in dominant vegetation from black spruce to deciduous-dominated forests, representing a vegetation transition that is novel over the past several thousand years [15,16]. During the extreme 2004 Alaska fire season, volatilization of soil organic N ranged from 0–94% and averaged 50% in burned black spruce stands [17]. Sustained losses of N—resulting from higher rates of N-volatilization than N-fixation input—have been observed in the fire dependent longleaf pine savannas of the southeastern United States [18]. Despite the importance of fire in shaping community and ecosystem dynamics in the boreal forest [19], little is known about the effect of fire on the density, growth, and N-fixation of Siberian alder (interchangeably referred to here as alder) or the associated feedbacks to ecosystem N balance and post-fire plant community development. The historic boreal forest fire regime (i.e., predominantly low to moderate severity fires) facilitated increased alder growth and reproduction on burned areas in Canadian boreal forest [20]. However, evidence from a Swedish boreal forest suggests that during extreme fire events, there is a complete destruction of rhizomatous shrubs and seed banks [21]. Extreme fire events within the Alaskan boreal forest could significantly reduce alder recolonization and resprouting, thereby limiting total N inputs and subsequently ecosystem resilience to disturbance. Post-fire alder development is influenced by pre-fire alder distribution, as well as the patterns and factors affecting alder recruitment, growth and N-fixation across upland boreal forest stand types (e.g., black spruce versus deciduous dominance). While it is likely that these factors are strongly influenced by fire severity, the interactive effects of fire severity and site conditions on alder density, growth and N-fixation have not been studied.

Alder has been described as a common component of post-fire successional dynamics [22], yet its abundance in various post-fire successional stands ranges from absent to very dense [23,24]. Such a variable distribution is likely due to a combination of fire history and other environmental factors. Disentangling the effects of Alaska’s changing fire regime on alder distribution and abundance and the associated impacts on post-fire N-balance and ecosystem resilience requires examination of the patterns and factors influencing alder N-fixation inputs and their relationship to fire severity effects at landscape scales. Because high fire severity has been shown to reduce post-fire rhizomatous shrub abundance in the boreal forest [21], we hypothesized that high severity fires limit post-fire alder density and therefore stand-level N-fixation inputs during secondary succession. However, in order to test for an effect of fire severity on alder density (and therefore stand-level N-fixation input), we must disentangle fire severity effects from other potential effects. Our specific objective was to characterize how alder density, nodule-level N-fixation, nodule-level biomass, alder ramet and leaf traits, and plant-level N-fixation input vary across a fire severity gradient, fire age, and environmental characteristics (soil and topography). Our final goal of this study was to describe the relationship among fire severity, alder symbiotic N-fixation input, and post-fire N-balance. Our data show that high severity fire substantially reduces alder density which contributes, at least initially, to a strong imbalance between the high amount of N that was volatilized and the low amount of N-input during secondary succession.

Materials and methods

Study area

Our study area encompassed two burn scars within the Yukon-Tanana Uplands ecoregion [25] of interior Alaska. Study plots were located on public land owned by the State of Alaska and the Fairbanks North-Star Borough, and private land owned by the University of Alaska Fairbanks. Access to University of Alaska Fairbanks lands was granted by the Poker Flats Research Range and the Bonanza Creek Long Term Ecological Research program. This field study did not involve protected or endangered species. One of the burn scars sampled—the 1971 Wickersham Dome Fire (WDF)—is located approximately 35 km NW of Fairbanks, Alaska (64.9° N, 147.9° W) and covers 5,500 ha. The 2004 Boundary Fire (BF) scar is located approximately 40 km NE of Fairbanks and covers over 210,000 ha. Study plots were located between 100 m and 5 km from the burn scar edge and did not overlap roads, trails, fire-fighting treatments or other unnatural features. Fire history records indicate that no other fires occurred in the study area at least since 1940 [26]. Discontinuous permafrost is found 40–50 cm below the soil surface, but ridgetops and upper south-facing slopes often lack permafrost [27]. Throughout the study area alder occurs as a tall shrub that can form dense patches with multiple individuals close to one another—particularly on disturbed sites such as trails and roadsides where the mineral horizon is exposed.

Field and laboratory methods

Siberian alder density

Siberian alder density (plants ha-1) sampling occurred in summer 2014. Each study plot was circular (100-m diameter) and plots were spaced 200 m apart along randomly located toposequence transects of varying lengths [WDF (n = 21 transects), BF (n = 40 transects)]. Plots within the BF were randomly located within the same topographic range sampled in the WDF (324–581 m elevation, 0–360° aspect, and 0–26° slope). Alder density was estimated by measuring the distance between plot center and the nearest alder (if >50 m, then truncated to 50 m) on WDF sample plots (n = 80) and BF sample plots (n = 183). An individual alder was defined as one or more tightly clustered ramets spatially distinct from another individual on the same plot. Distances were later used in a non-parametric formula for estimating plant density (see Statistical analysis). We chose to measure alder density with this method because it is a more robust estimator of non-parametric plant distributions than other methods of estimating plant density [2830].

Nodule-level N-fixation

A subsample of the 2014 alder density plots was chosen for N-fixation sampling between June 29th and July 29th of 2015—the peak of the season for N-fixation activity [4,31]. The 2014 plots were stratified by burn scar and stand type (see Stand types, topography, and fire severity). We alternated sampling between burn scars daily so that sampling dates for each burn scar were evenly spread throughout the 30-day sampling period. On each day we randomly selected a stand type and then randomly selected a plot within the chosen stand type for measurement. This method of selecting plots controlled for variation in N-fixation activity throughout the day and throughout the 30-day sampling period. We subsampled as many of the 2014 plots as possible during the 30-day sampling period. Within the BF, nodules from 48 alders across 19 plots and four stand types were sampled for N-fixation, and in the WDF, nodules from 48 alders across 21 plots and three stand types were sampled. At each plot, experimental or control nodules were collected from alders of representative height and vigor. Experimental nodules were then incubated in 15N2 gas following previously established methods for alder nodule 15N2 uptake [31]. Experimental and control nodules from individual alders were separately stored in 5 ml cryovials which were preserved in liquid nitrogen during transfer from the field to the lab. In the lab, nodules were dried at 65 °C and ground before mass spectrometry analysis [3133]. Calculations of nodule-level N-fixation rate (μmole N g nodule-1 hr-1) followed previous methods that account for the fixation of both 15N2 and 14N2 [4,31,32]. Rates of nodule-level N-fixation in this study reflect maximal rates relative to the assumed lower rates in spring, fall and other periods of summer.

Nodule-level biomass

Between July 30th and September 28th, 2015, plant-level live nodule biomass (g nodule m-2 plant-1) was sampled at each plot that had been sampled for N-fixation [BF (n = 19), WDF (n = 21)]. At each plot, we systematically selected five alders of representative height and vigor that were not previously sampled for nodule-level N-fixation rate [BF (n = 95 alders), WDF (n = 105 alders)]. Below each alder five random soil cores (5.5 cm diameter) were collected within the area of nodulation—an area we defined as a 1 m buffer around the perimeter of the outermost ramets of an individual alder. Each soil core included the entire organic horizon and the upper 5 cm of mineral horizon. Cores from a single alder were pooled and plant-level live nodule biomass was calculated in the lab using established methods [32,33]. The plant-level live nodule biomass values were then averaged at each plot for a plot-level estimate of plant-level live nodule biomass.

Siberian alder ramet and leaf traits

For each alder density plot sampled in 2014 (n = 80 plots in the WDF, n = 183 plots in the BF), the plot was divided into four quarters; in each quarter the ramet basal diameter (cm), ramet height (m), number of ramets, and live or dead status of each ramet were measured for the individual alder nearest to plot center. For each alder that was sampled for nodule-level N-fixation in 2015 (n = 48 alders across 21 plots in the WDF; n = 48 alders across 19 plots in the BF) 10 leaves were collected at the time of N-fixation sampling and used to estimate specific leaf mass (mg cm-2) following Ruess and others [33].

Stand types, topography, and fire severity

For each alder density plot sampled in 2014 (n = 263), dominant plant cover was quantified using the Braun-Blanquet relevé method [34]. Trees and shrubs were identified to species, grasses and forbs to genus, and all non-vascular plants as Sphagnum, “other moss,” or “lichen.” Cover was determined separately for dead trees (diameter > 7.6 cm) that were on the ground and all other forms of plant litter. Post-fire stand types of each burn scar were determined with a hierarchical clustering of plot-level cover estimates using PC-ORD, Version 5.0; Euclidean distance measures and Warde’s linkage method were used in the calculation [35]. Any species occurring in < 5% of all plots was removed from the dataset before relativizing species cover based on each species maximum cover. Indicator Species Analysis (ISA) in PC-ORD [36] was used to identify which hierarchical grouping configuration produced the most distinct stand types for each burn scar. Pre-fire stand types for the BF were determined by the proportion of burned tree species (standing and down) and unburned canopy-dominant tree species. Pre-fire stand types were later confirmed using a pre-fire satellite image (May 2002 Landsat 7 ETM image).

Sample plot slope, aspect, and elevation, and solar radiation were determined using a 30-m resolution digital elevation model and the Spatial Analyst toolbox in ArcGIS [37]. Fire severity was determined for each plot within the BF using the difference in normalized burn ratio (dNBR) as derived from 30-m resolution Landsat imagery [38]. Raster pixels with a majority overlap on a circular sample plot were averaged together for a plot-level mean dNBR value. Fire severity was not determined for the WDF plots due to a lack of pre-fire satellite imagery.

Soil properties

Beneath each alder sampled for nodule-level N-fixation (n = 48 alders across 21 plots in the WDF; n = 48 alders across 19 plots in the BF), moisture (%) and temperature (°C) of the organic horizon were measured with a CS620 HydroSense water-content probe (Campbell Scientific, Logan, UT, USA) and a TM99A REOTEMP digital thermometer (REOTEMP Instruments, San Diego, CA, USA), respectively. We controlled for variation in temperature and moisture among stand types and between burn scars through the previously described method of random plot selection during the 30-day sampling period.

Additional soil measurements were collected on plots sampled for nodule-level N-fixation (n = 21 plots in the WDF; n = 19 plots in the BF), but this time measurements were collected around a randomly chosen alder of representative height and vigor that was not sampled for N-fixation. Depth of organic horizon (cm) was measured at ten random locations along a randomly oriented, 20 m transect that bisected the alder at 10 m. Of the ten soil depth locations, one was randomly selected for Oi (fibric—minimally decomposed organic matter), Oe (hemic—moderately decomposed organic matter), and Oa (sapric—highly decomposed organic matter) depth measurements and a mineral horizon sample approximately 5 cm below the organic horizon. Bulk density (g cm-3), soil pH, total nitrogen (% N), carbon (% C) and phosphorus (% P) were all measured from mineral horizon samples following Mitchell and Ruess [9].

Post-fire N-balance

There are several mechanisms for N-loss and N-gain in the boreal forest ecosystem. To determine the effect of post-fire alder N-input on total ecosystem N-balance, we estimated post-fire N-loss by multiplying rates of wildfire N-volatilization [17,39] by the amount of combustible N [17,40]. We then estimated N-gains using values from previous studies and this study. N-gains included the dominant sources of biological N-fixation (BNF) input in the boreal forest: feathermoss N-fixation input [41,42], free-living soil bacteria N-fixation input [43], Peltigera spp. N-fixation input [44], and Siberian alder N-fixation input from this study. Feathermoss N-fixation input was calculated by multiplying feathermoss cover values from this study by feathermoss N-fixation rates from other studies in the boreal forest [41,42]. Estimates of N-deposition [45] were also added to total N-gains. We then calculated within-stand post-fire N-balance by computing the difference between estimates of N-loss during fire and N-gain during the first 138-yr fire return interval (FRI). The average FRI for areas below 800 m on the Yukon-Tanana Uplands is 138 years [46]. It is important to note that our aim was to calculate N-exchange between terrestrial and atmospheric pools of N rather than estimating N-turnover within the terrestrial system that may include processes ultimately affecting N retention, such as nitrification.

Statistical analysis

Non-parametric density estimator

Alders in this study were non-randomly aggregated across the landscape; therefore, alder density was determined using distance to the nearest alder at each plot [WDF (n = 80 plots) and the BF (n = 183 plots)] and a nonparametric estimator of density [2830] implemented with the R function np.density.est [30]. A nonparametric median test was used to identify significant differences in nearest alder distance by post-fire age (11 vs 44 years) and among stand types within each burn scar.

Scaling-up nodule-level N-fixation

Alder annual plant-level N-fixation input (g N m-2 plant-1 yr-1) was calculated by combining nodule-level N-fixation rates with plant-level live nodule biomass. The method for calculating plant-level N-fixation input follows established methods which account for seasonal variation in nodule-level N-fixation rates [4,31,32] and the assumption of 24-hour N-fixation that has been documented in other studies [47,48].

Annual stand-level N-fixation input (also referred to as alder N-fixation input) (kg N ha-1 yr-1) was calculated by multiplying the average area of nodulation for a plant within a stand type (m2 plant-1) by alder annual plant-level N-fixation input and stand type alder density, as determined with the 2015 plot data [WDF (n = 21 plots) and the BF (n = 19 plots)].

Alder N-input and growth traits by burn scar and stand type

The ANOVA and Kruskal-Wallis tests were used to assess for significant differences in alder density, nodule-level N-fixation rate, alder growth traits (nodule biomass, ramet height, ramet diameter, specific leaf mass, number of live ramets, and number of dead ramets), and plant-level N-fixation input by burn scar and stand type. Unless stated otherwise, all statistical tests were conducted in R [49] and statistical significance was determined at α = 0.05. The Shapiro-Wilk test was used to assess the normality of variables, and non-normal variables were transformed using the Box-Cox power transformation. In the BF, non-normal variables included nodule-level N-fixation rate, live nodule biomass, dead nodule biomass, mean ramet diameter, mean ramet height, depth of the organic horizon, depth of the fibric layer, depth of the sapric layer, soil N, soil C, soil P, and plant-level N-fixation input. In the WDF non-normal variables included depth of the hemic layer, depth of the organic horizon, soil N, soil C, soil P, soil temperature, soil moisture, soil pH, mean ramet diameter, mean ramet height, dead nodule biomass, specific leaf mass, plant-level N-fixation input, and elevation. At the regional scale (both burn scars), non-normal variables included live nodule biomass, dead nodule biomass, mean ramet diameter, mean ramet height, live ramets per plant, and dead ramets per plant, soil moisture, depth of organic horizon, soil pH, depth of hemic layer, and solar radiation.

Homogeneity of variance across factor levels of categorical variables was tested with Levene’s test. One-way ANOVAs were used to test for differences in alder N-input and growth traits between burn scars and among stand types. For significant ANOVA results, Tukey’s test of honest significant difference was used to test factor level differences. For non-normal variables that could not be adequately transformed, differences were tested with the Kruskal-Wallis test and the Dunn-Bonferroni post-hoc test. Descriptive statistics throughout the text are untransformed and expressed as the mean ± 1 standard error, except alder density (plants ha-1) and alder annual stand-level N-fixation inputs (kg N ha-1 yr-1), which are both reported as the mean ± 1 standard deviation. The alder growth traits were intercorrelated (all |r| > 0.3, p < 0.05). We therefore used principal component analysis (PCA) of alder growth traits to distil suites of correlated variables into one or few variables. An integrator growth variable was created through PCA in SPSS [50] using the 2015 plots [WDF (n = 21 plots) and the BF (n = 19 plots)] as sampling units and we then used this integrator variable to observe the relationship among alder growth traits, burn scars, vegetation stand types, and environmental characteristics [50]. The KMO Measure of Sampling Adequacy and Bartlett’s test of sphericity were used to test each variable’s sample size and if the matrix was an identity matrix.

Multiple linear regression and AICc model selection

Modeling was used to determine the significance and relative importance of predictors of alder density (as represented by distance to nearest alder), nodule-level N-fixation rate, alder growth PCA axes, plant-level live nodule biomass, and annual plant-level N-fixation input. Response variables were modeled separately in R using the 2015 plot data [WDF (n = 21 plots) and the BF (n = 19 plots)], multiple linear regression, and Akaike information criterion (AICc) best model subset multi-model inference. The response variables were modeled across both burn scars and within each burn scar using environmental characteristics, post-fire age (regional models only), and fire severity (dNBR) (BF models only) as predictors. Potential predictors included plot-level environmental variables, post-fire age (only for models that include both burn scars), and fire severity (BF models only). The potential predictors were normalized, tested for significant correlation with the response (Pearson’s, p < 0.05), and non-collinear predictors (|r| < 0.6) were included in a global model. Post-fire age was included in all regional-scale global models (i.e., models that include both burn scars), and fire severity (dNBR) was included in all BF global models. Separate global models were created for each response variable at the regional-scale (n = 6 global models) and for each burn scar (n = 12 global models). Best model subsets (AICc ≤ 2 units of lowest AICc) were selected with the dredge function from the MuMIn package in R [51], and β coefficients were standardized following Cade [52] and then averaged with the model.avg function from the MuMIn package.

Structural equation models

Multiple linear regression and AICc model selection did not indicate a direct effect of fire severity on any of the response variables. Therefore, we used structural equation models (SEM) to detect direct and indirect effects of fire severity on alder density, growth traits (PCA1 and PCA2), and N-fixation in the black spruce plots of the BF (n = 11). We created SEMs only for the black spruce stands because our landscape-level sample design captured the entire gradient of fire severity only in this stand type.

SEM predictors included significant predictors from the AICc best model subsets and fire severity. SEM models were fit using the lavaan package in R [53]. Non-significant (p > 0.05) variables in the SEM models were sequentially removed until only significant predictors remained. Modification indices were used to identify ecologically significant missing paths [54] that were not initially included in the AICc best model subset. SEM model fitness was determined using the chi-square test (p > 0.05), the root mean square error of approximation (RMSEA; lower 90% confidence intervals of RMSE close to zero), and the comparative fit index (CFI > 0.9) [54].

Results

Stand type classification

Hierarchical clustering and indicator species analysis of the relevé plot data produced three distinct post-fire stand types for the WDF that were named according to their dominant tree species: Black Spruce, Deciduous, and Mixed (black spruce and deciduous codominance) (Table 1). In the BF, four post-fire stand types emerged and were named according to their dominant pre-fire stand type and level of fire severity (Deciduous-Moderate, Black Spruce-Moderate, Black Spruce-Moderate to High, Black Spruce-High) (Table 1).

Table 1. Wickersham dome fire and the boundary fire stand types.

Stand type (% of burn scar study area) dNBR Indicator species or other cover type
WICKERSHAM DOME FIRE
Black Spruce (42%) NA Moss, Rhododendron groenlandicum, Vaccinium vitis-idaea, Picea mariana (seedling), Betula glandulosa, Sphagnum spp., Equisetum spp., Eriophorum spp., Rubus chamaemorus, Polygonum alpinum, Rhododendron palustre ssp. decumbens
Deciduous (39%) NA Litter, Betula neoalaskana (tree), Populus tremuloides (tree), dead and down trees, Populus tremuloides (seedling), Rosa acicularis, Geocaulon lividum, Picea glauca (tree)
Mixed (19%) NA Lichen, Picea mariana (tree), Vaccinium uliginosum, Salix spp., Cornus canadensis, Empetrum nigrum
BOUNDARY FIRE
Deciduous-Moderate (28%) 354 ± 30 a Betula neoalaskana (tree), Betula neoalaskana (seedling), litter, Calamagrostis spp., dead and down trees, Populus tremuloides (seedling), Chamerion angustifolium, Rubus idaeus, Cornus canadensis, Populus tremuloides (tree), Rosa acicularis, Lycopodium spp.
Black Spruce-Moderate (32%) 350 ± 35 a Sphagnum spp., Rubus chamaemorus, Picea mariana (tree), Lichen, Rhododendron palustre ssp. decumbens, Eriophorum spp., Vaccinium vitis-idaea, Picea mariana (seedling), Vaccinium oxycoccos, Moss, Betula nana, Empetrum nigrum, Andromeda polifolia, Polygonum alpinum, Petasites frigidus
Black Spruce-Moderate to High (20%) 499 ± 28 d Vaccinium uliginosum, Rhododendron groenlandicum, Betula glandulosa, Betula sp. (hybrid shrub), Arctagrostis latifolia
Black Spruce-High (20%) 664 ± 28 c Salix spp. and Carex spp.

dNBR classes for the Boundary Fire are low (25 to 275), moderate (276 to 549), and high (≥ 550) and values represent the mean ± standard error. Different letters among dNBR values indicate significant differences at p < 0.05. Indicator species are listed in order of descending indicator value.

Siberian alder density

Alder density was low in severely burned stands during early post-fire succession, but it likely increases by intermediate post-fire succession. Alder density in the younger BF (65 ± 14 plants ha-1) was 150% lower than the WDF (162 ± 39 plants ha-1) (p < 0.001, Fig 1). Between-fire differences were driven by very low alder density in the Black Spruce-High stand type within the BF (2 ± 1 plant ha-1) (Fig 1). Alder density in the Black Spruce-High stand type was roughly 97% lower compared to Black Spruce-Moderate (p = 0.013) and Black Spruce-Moderate to High (p < 0.001) stand types (59 ± 27 and 61 ± 20 plants ha-1, respectively), and 99% lower than the Deciduous-Moderate stand type (164 ± 44 plants -1) (p < 0.001, Fig 1). Within the WDF, alder density in the Black Spruce stand type (98 ± 34 plants ha-1) was 34% and 50% lower compared to the Deciduous and Mixed stand types (154 ± 53 and 195 ± 74 plants ha-1, respectively), though differences were not significant (p = 0.478, Fig 1).

Fig 1. Siberian alder nodule productivity, plant-level N-input, plant density, and stand-level N-fixation input in the Boundary Fire (n = 19), Wickersham Dome Fire (n = 21), and stand types within each burn scar.

Fig 1

Significant differences are determined at p < 0.05 between burn scars (A or B), and among stand types of the Boundary Fire (a or b) and Wickersham Dome Fire (* or ^). Graph order from top to bottom: nodule-level N-fixation rate (μmol N g-1 hr-1), plant-level live nodule biomass (g nodule m-2 plant-1), annual plant-level N-fixation input (g N m-2 plant-1 yr-1), alder density (plants ha-1), and annual stand-level N-fixation input (kg N ha-1 yr-1).

Regional-scale alder density was associated with an interaction between fire severity and environmental characteristics 11 years after fire. A strong effect of site-specific environmental characteristics on alder density was present after 40 years of post-fire succession. Across both burn scars, plots with high moisture in the organic horizon were associated with lower alder density (β = -6.68), p = 0.012) (Table 2). Within the BF, alder density was highest in plots that had a deeper Oe layer (β = 7.24), p = 0.048) (Table 2). A SEM for black spruce dominant plots showed a significant (p = 0.026) indirect negative effect of fire severity on alder density via O soil depth (Fig 2A), where higher severity fire results in more combustion of the organic layer. Within the WDF, variation of alder density across all plots was negatively associated with moisture in the organic horizon (β = -9.83) and positively associated with slope (β = 7.30) (p = 0.005 and p = 0.034, respectively); wet and/or shallow-sloped plots had lower alder density than drier and/or steeper-sloped plots (Table 2).

Table 2. Landscape models (AICc) for Siberian alder N-input and growth traits.

Response Predictor Variable (standardized beta coefficient, importance value)
REGION
 Siberian alder density Moisture in organic horizon (-6.68, 1), mineral horizon C:N (-3.05, 0.38)
 PCA1 Depth of organic horizon (-0.64, 1), depth of hemic layer (0.29, 1), mineral horizon N:P ratio (-0.21, 0.52), post-fire age (0.19, 0.52), mineral horizon pH (0.14, 0.13)
 PCA2 Post-fire age (0.43, 1), moisture in organic horizon (-0.28, 0.84), mineral horizon C:N ratio (-0.27, 0.51), mineral horizon P (-0.19, 0.16), mineral horizon bulk density (0.18, 0.14)
 Plant-level live nodule biomass Depth of organic horizon (-7.08, 1), post-fire age (-2.27, 0.46)
 Nodule-level N-fixation rate Post-fire age (-2.68, 1)
 Annual plant-level N-fixation input Depth of organic horizon (-2.16, 1), post-fire age (-2.02, 1), soil N:P ratio (-1.24, 0.56), depth of hemic layer (-0.89, 0.37)
BOUNDARY FIRE
 Siberian alder density Depth of hemic layer (7.24, 0.77), depth of sapric layer (-6.49, 0.50), dNBR (-6.32, 0.47)
 PCA1 Depth of organic horizon (-0.42, 0.99), mineral horizon pH (0.34, 0.95), moisture in organic horizon (-0.34, 0.82)
 PCA2 Elevation (0.34, 0.99), mineral horizon pH (0.29, 0.96)
 Plant-level live nodule biomass Depth of organic horizon (-8.08, 0.82), mineral horizon N:P (-6.41, 0.61), moisture in organic horizon (-5.69, 0.33), mineral horizon pH (5.05, 0.15), slope (-4.74, 0.12)
 Nodule-level N-fixation rate Mineral horizon C:N ratio (-2.37, 0.52), slope (-1.98, 0.47), dNBR (1.76, 0.34), mineral horizon bulk density (1.82, 0.18)
 Annual plant-level N-fixation input Mineral horizon N:P ratio (-3.55, 0.78), depth of organic horizon (-3.08, 0.78), slope (-2.77, 0.22)
WICKERSHAM DOME FIRE
 Siberian alder density Moisture in organic horizon (-9.83, 0.94), slope (7.30, 0.74)
 PCA1 Depth of organic horizon (-0.59, 0.94)
 PCA2 Mineral horizon C:N ratio (-0.58, 1), moisture in organic horizon (-0.34, 0.5)
 Plant-level live nodule biomass NA
 Nodule-level N-fixation rate Elevation (1.90, 1)
 Annual plant-level N-fixation input Elevation (0.77, 0.69), Depth of organic horizon (-0.67, 0.54)

Response variables: Siberian alder density (plants ha-1), PCA1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)], PCA2 [number of live ramets per plant (+) and dead ramets per plant (+)], plant-level live nodule biomass (g nodule m-2 plant-1), nodule-level N-fixation rate (μmol N g-1 hr-1), and annual plant-level N-fixation input (g N m-2 plant-1 yr-1) across the region (n = 40), the Boundary Fire (n = 19), and the Wickersham Dome Fire (n = 21). Standardized beta coefficients and importance values are in parentheses, respectively, for each predictor variable. The baseline level for post-fire age in the regional models is the younger Boundary Fire. Significant predictors (p < 0.05) are in bold. Marginally significant predictors (p < 0.1) are italicized.

Fig 2. Structural equation model of A) Siberian alder density (plants ha-1), B) PCA1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)], and C) Plant N-fix [annual plant-level N-fixation input (g N m-2 plant-1 yr-1)] in post-fire black spruce dominant plots of the Boundary Fire (n = 11).

Fig 2

Fire severity = difference in normalized burn ratio (dNBR), O depth = depth of organic horizon, Oe depth = depth of hemic layer, Soil pH = mineral horizon pH, Soil moisture = moisture in organic horizon, Soil CN = mineral horizon C:N ratio, Nodule N-fix = nodule-level N-fixation rate (μmol N g nodule-1 hr-1), NODBIO = plant-level live nodule biomass (g nodule m-2 plant-1), Soil NP = mineral horizon N:P ratio. Standardized beta coefficients are shown for predictor variable pathways. Negative pathways are shown in red dotted lines, and positive pathways are shown in blue solid lines. Wider lines indicate stronger beta coefficients.

Alder growth traits and plant-level N-fixation input

Alder individuals fixed lower amounts of N per year in the intermediate burn scar compared to the early burn scar, especially within black spruce dominant stands—likely due to lower rates of nodule-level N-fixation rather than lower nodule biomass. Mean nodule-level N-fixation rate in the BF (12.88 ± 1.18 μmol N g-1 hr-1) was 70% higher than in the WDF (7.58 ± 0.59 μmol N g-1 hr-1) (p < 0.001), (Fig 1). Within the BF, nodule-level N-fixation rate was not significantly different among stand types (p > 0.05) (Fig 1). Within the WDF, nodule-level N-fixation rate in Black Spruce stands (5.85 ± 1.04 μmol N g-1 hr-1) was not significantly different than Deciduous stands (p = 0.433), but was 37% lower than Mixed stands (p = 0.020) (7.52 ± 0.43 and 9.34 ± 0.77 μmol N g-1 hr-1, respectively) (Fig 1). We did not detect a significant difference (p = 0.384) in plant-level live nodule biomass between the BF (16.30 ± 3.56 g nodule m-2 plant-1) and the WDF (9.45 ± 1.58 g nodule m-2 plant-1), nor among stand types within the BF or WDF (p = 0.230 and p = 0.225, respectively, Fig 1). However, alder annual plant-level N-fixation input in the BF (6.86 ± 1.65 g N m-2 plant-1 yr-1) was significantly higher than the WDF (2.26 ± 0.03 g N m-2 plant-1 yr-1) (p = 0.036, Fig 1). Within the WDF, alder annual plant-level N-fixation input varied by stand type—Black Spruce stands (1.17 ± 0.07 g N m-2 plant-1 yr-1) were roughly 60% lower than Deciduous and Mixed stands (3.17 ± 0.04 and 3.00 ± 0.07 g N m-2 plant-1 yr-1, respectively); however the difference between Black Spruce and Mixed stands was significant whereas the Black Spruce and Deciduous stand difference was not significant (p = 0.043 and p = 0.082, respectively, Fig 1). The low sample size within Deciduous stands (n = 5) may explain the lack of significant difference from Black Spruce stands (S1 Table). We did not detect significant differences in alder annual plant-level N-fixation input among stand types of the BF (p = 0.395, Fig 1).

Higher alder growth in deciduous dominated versus black spruce dominated stands reflects general patterns of boreal forest aboveground annual primary productivity. Additionally, the height, diameter, and number of alder ramets per plant was strongly influenced by time since fire as opposed to environmental characteristics. The PCA of alder growth traits resulted in two significant axes that explained 48% and 26% of alder growth, respectively (S2 Table). Alder plant-level live nodule biomass, mean ramet height, and mean ramet diameter loaded positively onto the first PCA axis (hereafter referred to as PCA1), whereas specific leaf mass loaded negatively onto PCA1. The number of live ramets per plant and dead ramets per plant both loaded positively onto the second PCA axis (hereafter referred to as PCA2). Dead nodule biomass was excluded from the PCA due to insufficient sample size (KMO < 0.5).

Higher values of PCA1 indicate plots with alders that were relatively tall, with greater basal diameter, thinner leaves, and higher plant-level live nodule biomass (Fig 3). Across the region, the BF and WDF did not have significantly different PCA1 values (p = 0.708, Fig 3A) (S3 Table). Significantly higher PCA1 values were observed in Deciduous-Moderate stands compared to Black Spruce-Moderate stands in the BF (p = 0.026, Fig 3B) (S4 Table), and in Deciduous versus Black Spruce stands of the WDF (p < 0.001, Fig 3B) (S1 Table).

Fig 3. Principal component analysis (PCA) of Siberian alder growth traits: Plant-level live nodule biomass (NODBIO), mean ramet height (Height), mean ramet diameter (MRD), specific leaf mass (SLM), live ramets per plant (LRPP), and dead ramets per plant (DRPP).

Fig 3

The PCA is displayed by burn scar (A) and by stand type within each burn scar (B). Brown arrows and labels represent the orientation of Siberian alder growth traits used in the PCA. Ellipses represent the 95% confidence interval for each burn scar or stand type. Black arrows with associated blue labels symbolize the important predictor variables of each PCA axis as determined by AICc best model subset for both burn scars: Moisture = moisture in organic horizon, O depth = depth of organic horizon, Oe depth = depth of hemic layer, Age = post-fire age.

The number of live ramets per plant and dead ramets per plant both loaded positively onto the second PCA axis (hereafter referred to as PCA2). PCA2 was significantly higher in the WDF than in the BF (p = 0.001, Fig 3A, S3 Table), which reflects alder’s characteristic sprouting of new ramets over time. PCA2 did not vary significantly among stand types within the BF or among stand types within the WDF (p = 0.498 and p = 0.642, respectively) (Fig 3B, S4 and S1 Tables).

Eleven years after fire (BF), alders growing in a shallow, low-moisture organic horizon with higher pH of the mineral horizon had more live nodules, more ramets, and larger ramets compared to other alders. However, alder growth in the BF was lower on black spruce dominant plots that experienced high severity fire—suggesting that high severity fire had a stronger effect on alder density than soil conditions. Forty years after fire (WDF), alder showed higher growth (height, diameter, and more numerous ramets and nodules) in shallow organic horizons, especially where mineral horizon C:N ratios were low, such as deciduous- or mixed-dominated stands of higher aboveground annual primary productivity. Yet, the level to which alder may drive soil conditions rather than respond to them is unclear.

Across both burn scars, PCA1 [a composite variable of alder plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+) and specific leaf mass (-)] was highest in plots of low depth of the organic horizon (β = -0.64, p < 0.001) and high depth of the hemic layer (β = 0.29, p = 0.017) (Table 2, Fig 3A). Within the BF, higher mineral horizon pH (β = 0.34, p = 0.026) and low moisture in the organic horizon (β = -0.34, p = 0.033) were additional predictors of high PCA1 (Table 2). SEM models for black spruce dominant plots in the BF (n = 11) indicated a direct negative effect of fire severity on PCA1 (p < 0.001), but a net positive effect of fire severity on PCA1 through its negative effects on O soil depth (p = 0.026) (Fig 2B). In contrast, PCA1 in the WDF was solely associated with O soil depth (β = -0.59) (p = 0.007) (Table 2). Though post-fire age had no effect on PCA1 regionally (p = 0.120) (Table 2), differences in which variables predicted PCA1 across both burn scars suggest that environmental variables promote early post-fire growth although those variables are not as important to alder growth by intermediate succession.

PCA2 [a composite of live ramets (+) and dead ramets (+)] was strongly associated with post-fire age (β = 0.43, p = 0.003) and moisture in the organic horizon (β = -0.28, p = 0.048) across both burn scars (p < 0.05, Table 2, Fig 3A). Within the younger BF, higher elevation (β = 0.34) and higher soil pH (β = 0.29) were both positively associated with higher PCA2 (p = 0.001 and p = 0.005, respectively) (Table 2). Within the WDF, however, PCA2 was best predicted by an inverse relationship with mineral horizon C:N ratio (β = -0.58, p = 0.011) (Table 2).

Alder annual stand-level N-fixation input

Fire appears to alter site conditions to favor higher alder annual plant-level N-fixation input within all stand types, but it also reduced alder density and therefore lowered alder annual stand-level N-fixation input—especially within severely burned black spruce dominated stands. Estimates of alder annual stand-level fixation inputs are a product of alder annual plant-level N-fixation input, alder density, and area of nodulation. As a result of higher alder annual plant-level N-fixation input in the BF compared to the WDF (p = 0.036) and higher alder density in the WDF compared to the BF (p < 0.001) there was no significant difference in alder annual stand-level N-fixation inputs between these two burn scars (2.75 ± 0.08 and 2.91 ± 0.06 kg N ha-1 yr-1, respectively) (Fig 1). However, within the WDF, alder annual stand-level N-fixation input in the Black Spruce stand type (0.83 ± 0.04 kg N ha-1 yr-1) was 82% lower compared to the Deciduous stand type (4.72 ± 0.02 kg N ha-1 yr-1) (Fig 1). Within black spruce dominant stands of the BF, alder annual stand-level N-fixation inputs averaged 93% lower (0.86 ± 0.03 kg N ha-1 yr-1) than the Deciduous stand type (11.53 ± 0.22 kg N ha-1 yr-1) (Fig 1). In the BF, alder annual stand-level N-fixation input within the Black Spruce-High stand type (0.06 ± 0.003 kg N ha-1 yr-1) averaged 88% and 97% lower than Black Spruce-Moderate and Black Spruce-Moderate to High stand types, respectively (Fig 1).

Environmental characteristics associated with alder annual plant-level N-fixation input interact across spatiotemporal scales. Local plot conditions (e.g. soil chemistry and O soil depth) were influenced by fire severity and were associated with alder annual plant-level N-fixation input eleven years after fire. Forty years after fire broader-scale landscape variables (e.g. topography) were associated with alder annual plant-level N-fixation input. Across both burn scars, depth of organic horizon (β = -2.16) and post-fire age (β = -2.02) were the strongest predictors of alder annual plant-level N-fixation input (p < 0.011 and p = 0.008, respectively) (Table 2). The components of alder annual plant-level N-fixation input (plant-level live nodule biomass and nodule-level N-fixation rate) were separately associated with depth of organic horizon (β = -7.08, p < 0.001) and post-fire age (β = -2.68, p < 0.001), respectively, across both burn scars (Table 2). Within the younger BF, alders growing in a low mineral horizon N:P ratio (β = -3.55, p = 0.019) and shallow organic horizon (β = -3.08, p = 0.034) had the highest alder annual plant-level N-fixation input—a result largely due to the significantly higher plant-level live nodule biomass in shallow organic horizons (β = -8.08, p = 0.022) and low mineral horizon N:P ratios (β = -6.41, p = 0.035) (Table 2). A SEM of alder annual plant-level N-fixation input for black spruce dominant plots in the BF (n = 11) showed that fire severity had a direct negative effect on depth of organic horizon (p < 0.001) and therefore an indirect positive effect on live nodule biomass (Fig 2C). Thus, high fire severity had a positive, indirect association with alder annual plant-level N-fixation input in the BF (Fig 2C). Within the WDF, alders at lower elevations (valley bottoms) had lower nodule-level N-fixation rates compared to alders at higher elevations (ridgetops) (β = 1.90, p < 0.001), resulting in a marginal effect on annual plant-level N-fixation input (β = 0.77, p = 0.077) (Table 2).

Post-fire N-balance

A positive post-fire N-balance (N-gains minus N-loss) is estimated in low to moderate severity fires after the first FRI, whereas high severity black spruce stands—where N-fixer density is very low and N-volatilization quite high—likely exhibit a negative N-balance. For a black spruce dominant stand which self-replaces after low severity fire, N gains are estimated to offset volatilized N over a subsequent 138 yr (FRI)—mostly due to feathermoss N-input (Table 3). For a deciduous stand that self-replaces after either low or high severity fire, N-gains are estimated to exceed volatilized N by an order of magnitude during a subsequent 138 yr FRI—mostly due to high Siberian alder N-input (Table 3). For a black spruce dominant stand that converts to deciduous dominance after high severity fire, N-gains are estimated to offset 15% of volatized N during a subsequent 138 yr FRI—an imbalance due to relatively high N-volatilization and relatively low BNF input, including that from Siberian alder (Table 3). Given the particularly low alder density after high severity fire, it is unlikely that our underestimation of plant-level live nodule biomass accounts for the large difference between N-loss and N-gain in high severity stands.

Table 3. Estimates of post-fire N-balance by stand type and fire severity.

Feathermoss N-fixation input (kg N ha-1 yr-1), free-living soil bacteria N-fixation input (kg N ha-1 yr-1), Peltigera ssp. N-fixation input (kg N ha-1 yr-1), Siberian alder N-fixation input (kg N ha-1 yr-1), and N-deposition (kg N ha-1 yr-1) are shown by stand type and age [early (0–20 yr), mid (20–60 yr), and late (60–138 yr)]. The total of all N-inputs during a 138 yr fire return interval (FRI) (kg N ha-1) is shown by stand type. N-loss due to volatilization (kg N ha-1) and N-balance (kg N ha-1) are shown by stand type and fire severity.

Stand Type and Age Feathermoss N-fixation input1 Free-living soil bacteria N-fixation input2 Peltigera spp. N-fixation input3 Siberian alder N-fixation input N-dep.5 FRI N-input6 Low Severity Moderate Severity High Severity
N-loss7 N-balance8 N-loss7 N-balance8 N-loss7 N-balance8
Black Spruce (self-replacing)
Early 0.271.67 0.84–0.99 0.22–0.94 0.52 ± 0.03 0.3 486 270 216 900 -414 NA NA
Mid 0.684.25 0.83 ± 0.04
Late 1.427.66 0.83 ± 0.044
Black Spruce to Deciduous (conversion)
Early 0–0.15 0.95–1.44 0.02–0.12 0.06 ± 0.003 0.3 195 NA NA NA NA 1350 -1155
Mid 0.01–0.48 0.06 ± 0.0034
Late 0.03–0.54 0.06 ± 0.0034
Deciduous (self-replacing)
Early 0–0.15 0.95–1.44 0.02–0.12 11.53 ± 0.22 0.3 974 84 890 NA NA 227 747
Mid 0.01–0.48 4.72 ± 0.02
Late 0.03–0.54 4.72 ± 0.024

1 Estimated using stand-level feathermoss N-fixation rates from other studies [41,42] and feathermoss cover (%) in stands of this study

2 Free-living soil bacteria N-fixation input for similar stand types in Nohrstedt [43]

3 Estimated from rates of Peltigera spp. N-fixation input in similar stand types of Katmai National Park and Preserve [44]

4 Direct measurement unavailable; estimates were made with N-fixation input values from younger stand types

5 N-deposition estimates from the National Atmospheric Deposition Program [59]

6 Sum of feathermoss N-fixation input, free-living soil bacteria N-fixation input, Peltigera spp. N-fixation input, Siberian alder N-fixation input, and N-deposition in each stand type over a 138 yr FRI.

7 Black Spruce and Black Spruce-to-Deciduous values were calculated using estimates of N-loss (%) for low [39], moderate [17], and high severity fire [17] and total combustible N [17]. Deciduous stand values were calculated using hypothetical values for N-loss (Low Severity: 10% of foliage, 50% of litter, 10% of soil organic layer; High Severity: 100% of foliage, 100% of litter, 20% of soil organic layer) and measured values for total combustible N [40].

8 Difference between 138 yr post-fire FRI N-input, and N-loss during the preceding fire event.

Other potential sources of post-fire N-gains may include 1–2 kg N ha-1 yr-1 from Lupine spp., 0.78 kg N ha-1 yr-1 from Shepherdia canadensis, or 9 kg N ha-1 yr-1 from Myrica gale [5557]; however, all three species occurred at either zero or trace percent cover in stands of this study. Thawed permafrost also presents another potential source of post-fire N-gains with nearly 30 kg N ha-2 made available to vegetation from 1 cm of thawed permafrost [58]. Yet, less than 10% of plant-available N within thawing permafrost is taken-up by deep-rooted plants during late growing season [59].

Discussion

We sought to disentangle the effects of fire severity from other potential effects on alder density (and therefore stand-level N-fixation input). We characterized how alder density, nodule-level N-fixation, nodule-level biomass, alder ramet and leaf traits, and plant-level N-fixation input vary across a fire severity gradient, fire age, and environmental characteristics (soil and topography). The results of this study support our hypothesis that high severity fires limit post-fire alder density and stand-level N-fixation inputs during secondary succession, but the association between fire severity and altered alder N-input is complex. We found that 11-years post-fire, high severity fire limits alder N-input via reductions to alder density; however, this effect was limited to black spruce dominant stands. Forty years after fire, alder annual stand-level N-fixation input in black spruce dominant stands was much lower than either deciduous or mixed stands largely due to lower nodule-level N-fixation rates that occurred in deep, wet organic horizons. Siberian alder annual stand-level N-fixation input varied among stand types and over time, with early-succession high severity black spruce dominant stands having the lowest inputs and early-succession moderately burned deciduous stands the highest inputs—a difference driven by variation in alder density and live nodule biomass along fire severity and soil chemistry gradients. Changing soil conditions coincide with differences in alder characteristics throughout secondary succession, making it difficult to parse alder’s preferred soil conditions from alder’s effect on soil conditions. However, the results from this study suggest that high severity fire and unfavorable soil conditions interact to limit post-fire alder N-input in the boreal forest. In converted black spruce stands these limitations on post-fire alder N-input, combined with high N-volatilization, result in net N-losses after the first fire return interval. However, potential alder recruitment and spread in these stands over successive fire return intervals may eventually recover N-losses from severe fire.

Spatiotemporal variation in Siberian alder N-fixation input

Siberian alder annual stand-level N-fixation inputs (kg N ha-1 yr-1) in this study were comparable to values for Siberian alder growing in intermediate-age white spruce stands [9], but approximately half those reported for thin-leaf alder (A. tenuifolia) growing along intermediate-age boreal forest floodplains [4,33]. Yet, Siberian alder N-fixation input is comparable to thin-leaf alder N-fixation input at the patch-scale. Large, dense patches of Siberian alder (~ 1 ha) were periodically encountered in both the Deciduous-Moderate and Black Spruce-Moderate stand types of the BF, but none occurred in any of the N-fixation sampling plots. If we scale-up Siberian alder annual plant-level N-fixation inputs (g N m-2 plant-1 yr-1) for these large patches they are estimated to fix approximately 91 ± 30 kg N yr-1 and 33 ± 31 kg N yr-1 for Deciduous-Moderate and Black Spruce-Moderate stand types, respectively. Therefore, post-fire Siberian alder is capable of fixing N at rates similar to thin-leaf alder of boreal forest floodplains [1,4,31,33].

Our estimate of stand-level N-fixation input is likely conservative due to the spatial restrictions we imposed on alder nodule sampling. Similar to previous studies, our measurements of plant-level live nodule biomass also were restricted to within a 1-meter radius of genets [9,31,33]. However, we and others [9] have observed nodules several meters from individual plants in all stand types, and although at low density, these nodules were outside our sampling radius.

Effect of fire severity on Siberian alder N-fixation input

Throughout boreal Alaska, fire severity, pre- and post-fire vegetation, depth of organic horizon, and environmental conditions are closely linked [60]. Our data suggest there is also a coupling between fire severity and alder N-input and growth traits in black spruce dominant stands after fire. We found that combustion of organic horizons during high severity fires was associated with a decrease in alder density, likely due to the destruction of rhizomes that are predominately found at the interface between the organic and mineral horizons [21,61]. Significantly lower alder density in severely burned black spruce dominant stands 11 years after the BF portends a link between the increasing incidence of high-severity fires and changing alder population dynamics across the Alaskan boreal forest.

Higher plant-level live nodule biomass and nodule-level N-fixation was observed in areas where fire destroyed the organic horizon. Lantz and others [20] showed that increased fire severity led to improved seedbeds and higher alder productivity. The accumulation of ash following the combustion of thick organic mats in black spruce dominant stands can increase available P in surface soils [62], and higher soil P is associated with increased nodule growth and higher annual plant-level N-fixation input by alder [4,31,33]. The Oi and Oe layers of the organic horizon were often combusted during the Boundary Fire, possibly contributing to increased soil aeration within the Oa layer—a condition that is known to increase nodule biomass [63] as well as N-fixation rates [33]. Despite our results which show fire can induce higher nodulation and nodule-level N-fixation, high severity fire in black spruce stands lowers alder density to an extent at which annual stand-level N-fixation inputs are considerably reduced. Though disturbances often lead to hotspots of alder seed recruitment and growth [20,64,65], a key question is whether the combination of lower alder density and higher alder nodulation and nodule-level N-fixation after severe fire will result in an overall increase or decrease of alder N-fixation inputs over longer time periods.

Post-fire N-balance

Understanding factors influencing alder distribution, expansion and productivity are critical to forecasting post-fire N-balance in a changing boreal forest. Our N-balance estimates suggest that wildfire-induced stand conversions [15] resulting from a more severe fire regime [14] could be associated with declining landscape-level N pools in stands not underlain by permafrost. In stands that convert from black spruce to deciduous dominance, we estimated low BNF input—and therefore low N-gains—due to low density of alder and other N-fixers. High alder density, growth, and N-fixation have been documented within deciduous stands of this study and others [9,23,24], therefore alder is capable of high post-fire N-input in newly converted deciduous stands. Yet, alder populations not only need to establish in newly converted deciduous stands, but also persist over multiple fire cycles to offset the magnitude of N volatilized during stand conversion.

Landscape-scale Siberian alder N-fixation input and ecological impacts

Our results highlight differences in alder annual stand-level N-fixation input among stand types, landscape positions, fire severity levels, and post-fire successional stands. The complex spatial distribution of factors influencing alder annual stand-level N-fixation input must be mapped at the regional scale to better assess post-fire N-balance across the landscape. By mapping just one of these factors (stand type), we found that 28% of the BF study area was Deciduous-Moderate, 32% was Black Spruce-Moderate, 20% was Black Spruce-Moderate to High, and 20% was Black Spruce-High (Table 1). The distribution of stand types combined with their estimated N-balance throughout a single fire return interval suggests that a future fire regime of increased fire severity could lead to reconfigurations N across the landscape. Specifically, nearly one-third of the landscape (Deciduous-Moderate) would accumulate N due to very high alder density and productivity, while one-fifth (Black Spruce-High) would trend toward N-depletion without alder recruitment and spread. Progressive N-losses over several fire cycles could further expand areas trending toward N-depletion and significantly alter ecosystem patterns and processes within upland boreal forests. Future analyses of within-stand alder patch distribution as well as patch- and landscape-scale mapping of the factors affecting post-fire N-balance are needed to help predict ecosystem consequences of changing N-pools.

Supporting information

S1 Table. Descriptive statistics of the alder growth traits in the Wickersham Dome Fire.

Statistics were calculated using the 2015 dataset (n = 21). Variables significantly different (p < 0.05) across stand types are shown in bold print. Different letters in the same row indicate significant differences among stand types at p < 0.05. NODBIO = live nodule biomass (g nodule m-2 plant-1); Height = mean ramet height (m); SLM = specific leaf mass (mg cm-2); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

(DOCX)

S2 Table. Total variance explained by a principal component analysis (PCA) of alder growth traits.

The PCA was conducted with 2015 plots (n = 40) and includes: plant-level live nodule biomass (g nodule m-2 plant-1), mean ramet height (m), specific leaf mass (g cm-2), mean ramet diameter (cm), and a count of live and dead ramets per plant. Eigenvalue cutoff was set at 1.

(DOCX)

S3 Table. Descriptive statistics for alder growth traits across the region.

Statistics were calculated with the 2015 dataset (n = 40) unless stated otherwise (2014 dataset, n = 200). Significant differences between the Boundary Fire and Wickersham Dome Fire are determined at p < 0.05 level and shown in bold font. Statistics are calculated for plots in which alder was present. NODBIO = live nodule biomass (g nodule m-2 plant-1); SLM = specific leaf mass (mg cm-2); Height = mean ramet height (m); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

(DOCX)

S4 Table. Descriptive statistics of the alder growth traits in the Boundary Fire.

Statistics were calculated using the 2015 dataset (n = 19), unless stated otherwise (2014 dataset, n = 125). Variables significantly different (p < 0.05) across stand types are shown in bold print. Different letters among columns in the same row indicate significant differences among stand types at p < 0.05. NODBIO = live nodule biomass (g nodule m-2 plant-1); Height = mean ramet height (m); SLM = specific leaf mass (mg cm-2); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

(DOCX)

S1 File

(ZIP)

S2 File

(ZIP)

Acknowledgments

We thank Sarah Lily and B’Elanna Rhodehamel for field assistance; Lola Oliver of the UAF Forest Soils Lab and Karl Olson of the Bonanza Creek LTER for laboratory assistance; the Institute of Arctic Biology and the Boreal Ecology Cooperative Research Unit for logistical support of fieldwork; and Gerald Frost for comments on previous drafts.

Data Availability

The following DOIs all direct to the underlying data: doi:10.6073/pasta/7f04d011ba2a39b08b794611b54b15ca doi:10.6073/pasta/020191d3b9b72c88a8487b1684eba15c doi:10.6073/pasta/0600e58dea74dd5df84153af35da6f56 doi:10.6073/pasta/4694dfc87d322b4891a12e3c3fdabe18 doi:10.6073/pasta/a8acc1f2107944a9e9ad91974c7aff91 doi:10.6073/pasta/a5eed7ac3329a4aca7fb6e54185f0c50 doi:10.6073/pasta/705056665d58f1138d9707f262487482 doi:10.6073/pasta/f0b1cb6152f360c42a11db3d5cd2a61a doi:10.6073/pasta/7496cd1d2f43929266e7feca934d1621 doi:10.6073/pasta/37703e3d1a3aa6c41a491cbba91a3ce1.

Funding Statement

This research was supported in part by the Bonanza Creek Long-Term Ecological Research Program which is funded by the National Science Foundation (award number DEB-1636476) (RR, TH); the USDA Forest Service, Pacific Northwest Research Station (RJVA-PNW-01-JV-11261952-231) (TH); and a student research grant from the UAF Center for Global Change & Arctic System Research (15-010) (BH). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

References

  • 1.Cleve KV, Viereck LA, Schlentner RL. Accumulation of Nitrogen in Alder (Alnus) Ecosystems near Fairbanks, Alaska. Arct Alp Res. 1971;3: 101–114. 10.2307/1549980 [DOI] [Google Scholar]
  • 2.Van Cleve K, Dyrness CT. Effects of forest floor disturbance on soil-solution nutrient composition in a black spruce ecosystem. Can J For Res. 1983;13: 894–902. 10.1139/x83-119 [DOI] [Google Scholar]
  • 3.Van Cleve K, Dyrness CT, Marion GM, Erickson R. Control of soil development on the Tanana River floodplain, interior Alaska. Can J For Res. 1993;23: 941–955. [Google Scholar]
  • 4.Uliassi DD, Ruess RW. Limitations to symbiotic nitrogen fixation in primary succession on the Tanana River floodplain. Ecology. 2002;83: 88–103. [Google Scholar]
  • 5.Nossov DR, Hollingsworth TN, Ruess RW, Kielland K. Development of Alnus tenuifolia stands on an Alaskan floodplain: patterns of recruitment, disease and succession: Patterns of recruitment, disease and succession. J Ecol. 2011;99: 621–633. 10.1111/j.1365-2745.2010.01792.x [DOI] [Google Scholar]
  • 6.Crocker RL, Major J. Soil Development in Relation to Vegetation and Surface Age at Glacier Bay, Alaska. J Ecol. 1955;43: 427–448. 10.2307/2257005 [DOI] [Google Scholar]
  • 7.Fastie CL. Causes and Ecosystem Consequences of Multiple Pathways of Primary Succession at Glacier Bay, Alaska. Ecology. 1995;76: 1899–1916. 10.2307/1940722 [DOI] [Google Scholar]
  • 8.Engstrom DR, Fritz SC, Almendinger JE, Juggins S. Chemical and biological trends during lake evolution in recently deglaciated terrain. Nature. 2000;408: 161–166. 10.1038/35041500 [DOI] [PubMed] [Google Scholar]
  • 9.Mitchell JS, Ruess RW. N2 fixing alder (Alnus viridis spp. fruticosa) effects on soil properties across a secondary successional chronosequence in interior Alaska. Biogeochemistry. 2009;95: 215–229. 10.1007/s10533-009-9332-x [DOI] [Google Scholar]
  • 10.Hu FS, Finney BP, Brubaker LB. Effects of Holocene Alnus expansion on aquatic productivity, nitrogen cycling, and soil development in southwestern Alaska. Ecosystems. 2001;4: 358–368. [Google Scholar]
  • 11.Compton JE, Church MR, Larned ST, Hogsett WE. Nitrogen Export from Forested Watersheds in the Oregon Coast Range: The Role of N 2 -fixing Red Alder. Ecosystems. 2003;6: 773–785. 10.1007/s10021-002-0207-4 [DOI] [Google Scholar]
  • 12.Shaftel RS, King RS, Back JA. Alder cover drives nitrogen availability in Kenai lowland headwater streams, Alaska. Biogeochemistry. 2012;107: 135–148. 10.1007/s10533-010-9541-3 [DOI] [Google Scholar]
  • 13.Bieniek PA, Walsh JE, Thoman RL, Bhatt US. Using Climate Divisions to Analyze Variations and Trends in Alaska Temperature and Precipitation. J Clim. 2014;27: 2800–2818. 10.1175/JCLI-D-13-00342.1 [DOI] [Google Scholar]
  • 14.Calef MP, Varvak A, McGuire AD, Chapin FS, Reinhold KB. Recent changes in annual area burned in Interior Alaska: the impact of fire management. Earth Interact. 2015;19: 1–17. 10.1175/EI-D-14-0025.1 [DOI] [Google Scholar]
  • 15.Johnstone JF, Hollingsworth TN, Chapin FS, Mack MC. Changes in fire regime break the legacy lock on successional trajectories in Alaskan boreal forest. Glob Change Biol. 2010;16: 1281–1295. 10.1111/j.1365-2486.2009.02051.x [DOI] [Google Scholar]
  • 16.Kelly R, Chipman ML, Higuera PE, Stefanova I, Brubaker LB, Hu FS. Recent burning of boreal forests exceeds fire regime limits of the past 10,000 years. Proc Natl Acad Sci U S A. 2013;110: 13055–13060. 10.1073/pnas.1305069110 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Boby LA, Schuur EAG, Mack MC, Verbyla D, Johnstone JF. Quantifying fire severity, carbon, and nitrogen emissions in Alaska’s boreal forest. Ecol Appl. 2010;20: 1633–1647. 10.1890/08-2295.1 [DOI] [PubMed] [Google Scholar]
  • 18.Tierney JA, Hedin LO, Wurzburger N. Nitrogen fixation does not balance fire‐induced nitrogen losses in longleaf pine savannas. Ecology. 2019;100 10.1002/ecy.2735 [DOI] [PubMed] [Google Scholar]
  • 19.Hollingsworth TN, Johnstone JF, Bernhardt EL, Chapin FS. Fire Severity Filters Regeneration Traits to Shape Community Assembly in Alaska’s Boreal Forest. Reinhart KO, editor. PLoS ONE. 2013;8: e56033 10.1371/journal.pone.0056033 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Lantz TC, Gergel SE, Henry GHR. Response of green alder (Alnus viridis subsp. fruticosa) patch dynamics and plant community composition to fire and regional temperature in north-western Canada: Response of vegetation to fire and regional climate. J Biogeogr. 2010;37: 1597–1610. [Google Scholar]
  • 21.Schimmel J, Granstrom A. Fire Severity and Vegetation Response in the Boreal Swedish Forest. Ecology. 1996;77: 1436–1450. 10.2307/2265541 [DOI] [Google Scholar]
  • 22.Chapin FS III, Viereck LA, Adams P, Van Cleve K, Fastie CL, Ott RA, et al. Successional processes in the Alaskan boreal forest In: Chapin FS III, Oswood MW, Van Cleve K, Viereck LA, Verbyla DL, editors. Alaska’s Changing Boreal Forest. New York: Oxford University Press; 2006. pp. 100–120. [Google Scholar]
  • 23.Viereck LA, Van Cleve K, Chapin FS, Hollingsworth TN. Vegetation plots of the Bonanza Creek LTER control plots: species percent cover (1975–2009). Bonanza Creek LTER—University of Alaska Fairbanks; 2010. Report No.: BNZ:174. http://www.lter.uaf.edu/data/data-detail/id/174
  • 24.Hollingsworth TN. Bonanza Creek LTER: shrub, seedling and sapling density from 1975 to present in the Bonanza Creek Experimental Forest near Fairbanks, Alaska. Bonanza Creek LTER—University of Alaska Fairbanks; 2017. Report No.: BNZ:530. http://www.lter.uaf.edu/data/data-detail/id/530
  • 25.Nowacki G, Spencer P, Fleming M, Brock T, Jorgenson T. Ecoregions of Alaska: 2001. U.S. Geological Survey; 2001. Report No.: Open-File Report 02–297.
  • 26.Alaska Fire Service. Fire History in Alaska. 2016. https://afsmaps.blm.gov/imf_firehistory/imf.jsp?site=firehistory
  • 27.Viereck LA, Dyrness CT. Ecological Effects of the Wickersham Dome Fire near Fairbanks, Alaska. Portland, Oregon: USDA Forest Service, Pacific Northwest Research Station; 1979. Report No.: PNW-GTR-90.
  • 28.Patil SA, Burnham KP, Kovner JL. Nonparametric Estimation of Plant Density by the Distance Method. Biometrics. 1979;35: 597–604. 10.2307/2530250 [DOI] [Google Scholar]
  • 29.Patil SA, Kovner JL, Burnham KP. Optimum Nonparametric Estimation of Population Density Based on Ordered Distances. Biometrics. 1982;38: 243–248. 10.2307/2530307 [DOI] [Google Scholar]
  • 30.Mitchell K. Quantitative analysis by the point-centered quarter method. ArXiv Prepr ArXiv10103303. 2015 [cited 6 Apr 2016]. http://arxiv.org/abs/1010.3303
  • 31.Anderson MD, Ruess RW, Uliassi DD, Mitchell JS. Estimating N2 fixation in two species of Alnus in interior Alaska using acetylene reduction and 15N2 uptake. Ecoscience. 2004;11: 102–112. [Google Scholar]
  • 32.Ruess RW, McFarland JM, Trummer LM, Rohrs-Richey JK. Disease-Mediated Declines in N-Fixation Inputs by Alnus tenuifolia to Early-Successional Floodplains in Interior and South-Central Alaska. Ecosystems. 2009;12: 489–502. 10.1007/s10021-009-9237-5 [DOI] [Google Scholar]
  • 33.Ruess RW, Anderson MD, McFarland JM, Kielland K, Olson K, Taylor DL. Ecosystem-level consequences of symbiont partnerships in an N-fixing shrub from interior Alaskan floodplains. Ecol Monogr. 2013;83: 177–194. [Google Scholar]
  • 34.Mueller-Dombois D, Ellenberg H. Aims and Methods of Vegetation Ecology. New York: Wiley; 1974. [Google Scholar]
  • 35.McCune B, Mefford MJ. PC-ORD: Multivariate Analysis of Ecological Data. Gleneden Beach, Oregon: MjM Software; 1999.
  • 36.Dufrêne M, Legendre P. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr. 1997;67: 345–366. [Google Scholar]
  • 37.ESRI. ArcGIS Desktop: Release 10.3. Redlands, CA: Environmental Systems Resource Institute; 2014.
  • 38.U.S. Geological Survey, U.S. Forest Service. Monitoring trends in burn severity assessment of fire information: ak 6526314694320040613. Sioux Falls, South Dakota or Salt Lake City, Utah: U.S. Geological Survey and U.S. Forest Service; 2014.
  • 39.Palviainen M, Pumpanen J, Berninger F, Ritala K, Duan B, Heinonsalo J, et al. Nitrogen balance along a northern boreal forest fire chronosequence. PLOS ONE. 2017;12: e0174720 10.1371/journal.pone.0174720 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40.Alexander HD, Mack MC. A Canopy Shift in Interior Alaskan Boreal Forests: Consequences for Above- and Belowground Carbon and Nitrogen Pools during Post-fire Succession. Ecosystems. 2016;19: 98–114. 10.1007/s10021-015-9920-7 [DOI] [Google Scholar]
  • 41.Jean M. Effects of leaf litter and environment on bryophytes in boreal forests of Alaska. Dissertation, University of Saskatchewa. 2017. https://ecommons.usask.ca/handle/10388/8247
  • 42.Jean M, Alexander HD, Mack MC, Johnstone JF. Patterns of bryophyte succession in a 160-year chronosequence in deciduous and coniferous forests of boreal Alaska. Can J For Res. 2017;47: 1021–1032. 10.1139/cjfr-2017-0013 [DOI] [Google Scholar]
  • 43.Nohrstedt H-O. Nonsymbiotic nitrogen fixation in the topsoil of some forest stands in central Sweden. Can J For Res. 2011;15: 715–722. 10.1139/x85-116 [DOI] [Google Scholar]
  • 44.Gunther AJ. Nitrogen Fixation by Lichens in a Subarctic Alaskan Watershed. The Bryologist. 1989;92: 202–208. 10.2307/3243946 [DOI] [Google Scholar]
  • 45.National Atmospheric Deposition Program. National Trends Network. National Atmospheric Deposition Program; 2018. http://nadp.slh.wisc.edu/data/ntn/plots/ntntrends.html?siteID=AK01
  • 46.Kasischke ES, Verbyla DL, Rupp TS, McGuire AD, Murphy KA, Jandt R, et al. Alaska’s changing fire regime—implications for the vulnerability of its boreal forests. Can J For Res. 2010;40: 1313–1324. 10.1139/X10-098 [DOI] [Google Scholar]
  • 47.Weisz PR, Sinclair TR. Soybean nodule gas permeability, nitrogen fixation and diurnal cycles in soil temperature. Plant Soil. 1988;109: 227–234. [Google Scholar]
  • 48.Huss-Danell K, Lundquist P-O, Ohlsson H. N2 fixation in a young Alnus incana stand, based on seasonal and diurnal variation in whole plant nitrogenase activity. Can J Bot. 1992;70: 1537–1544. [Google Scholar]
  • 49.R Core Team. R: A language and environment for statistical computing. Vienna, Austria; 2016. https://www.R-project.org/ [Google Scholar]
  • 50.IBM Corp. IBM SPSS Statistics for Windows. Armonk, NY: IBM Corp; 2010. [Google Scholar]
  • 51.Barton K. Mu-MIn: Multi-model inference. R Package Version 1.9.13. 2013. https://www.rdocumentation.org/packages/MuMIn/versions/1.9.13
  • 52.Cade BS. Model averaging and muddled multimodel inferences. Ecology. 2015;96: 2370–2382. 10.1890/14-1639.1 [DOI] [PubMed] [Google Scholar]
  • 53.Rosseel Y. lavaan: An R package for structural equation modeling. J Stat Softw. 2012; 1–36. [Google Scholar]
  • 54.Grace JB, Schoolmaster DR, Guntenspergen GR, Little AM, Mitchell BR, Miller KM, et al. Guidelines for a graph-theoretic implementation of structural equation modeling. Ecosphere. 2012;3: 1–44. 10.1890/ES12-00048.1 [DOI] [Google Scholar]
  • 55.Bond G. The fixation of nitrogen associated with the root nodules of Myrica gale L., with special reference to its pH relation and ecological significance. Ann Bot. 1951;15: 447–459. [Google Scholar]
  • 56.Fahey TJ, Yavitt JB, Pearson JA, Knight DH. The nitrogen cycle in lodgepole pine forests, southeastern Wyoming. Biogeochemistry. 1985;1: 257–275. 10.1007/BF02187202 [DOI] [Google Scholar]
  • 57.Hendrickson O, Burgess D. Nitrogen-fixing plants in a cut-over lodgepole pine stand of southern British Columbia. Can J For Res. 1989;19: 936–939. 10.1139/x89-143 [DOI] [Google Scholar]
  • 58.Mack MC, Finlay J., Demarco J, Chapin F, Schuur EA, Neff JC, et al. Nitrogen and phosphorus in Yedoma soils of Northeast Siberia: stocks, fluxes and the ecosystem consequences of nutrient release from permafrost thaw. Abstract presented at: Fall Meeting 2010; 2010; American Geophysical Union.
  • 59.Hewitt RE, Taylor DL, Genet H, McGuire AD, Mack MC. Below-ground plant traits influence tundra plant acquisition of newly thawed permafrost nitrogen. Mariotte P, editor. J Ecol. 2019;107: 950–962. 10.1111/1365-2745.13062 [DOI] [Google Scholar]
  • 60.Bernhardt EL, Hollingsworth TN, Chapin FS III. Fire severity mediates climate-driven shifts in understorey community composition of black spruce stands of interior Alaska: Effects of fire severity on understorey composition. J Veg Sci. 2011;22: 32–44. [Google Scholar]
  • 61.Zasada J. Natural regeneration of trees and tall shrubs on forest sites in interior Alaska In: Van Cleve K, Chapin FS III, Flanagan PW, Viereck LA, Dyrness CT, editors. Forest Ecosystems in the Alaskan Taiga. New York: Springer-Verlag; 1986. pp. 44–73. [Google Scholar]
  • 62.Certini G. Effects of fire on properties of forest soils: a review. Oecologia. 2005;143: 1–10. 10.1007/s00442-004-1788-8 [DOI] [PubMed] [Google Scholar]
  • 63.MacConnell JT. The Oxygen Factor in the Development and Function of the Root Nodules of Alder. Ann Bot 3. 1959;23: 261–268. [Google Scholar]
  • 64.Myers-Smith IH, Forbes BC, Wilmking M, Hallinger M, Lantz T, Blok D, et al. Shrub expansion in tundra ecosystems: dynamics, impacts and research priorities. Environ Res Lett. 2011;6: 045509 10.1088/1748-9326/6/4/045509 [DOI] [Google Scholar]
  • 65.Frost GV, Epstein HE, Walker DA, Matyshak G, Ermokhina K. Patterned-ground facilitates shrub expansion in Low Arctic tundra. Environ Res Lett. 2013;8: 015035 10.1088/1748-9326/8/1/015035 [DOI] [Google Scholar]

Decision Letter 0

RunGuo Zang

8 May 2020

PONE-D-20-08364

Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska.

PLOS ONE

Dear Mr. Houseman,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

ACADEMIC EDITOR: Your study has good results and new findings,but not presented clearly. Please reorganize your paper according to the suggestions of the reviewer to make it more understandable for readers.

  •  

==============================

We would appreciate receiving your revised manuscript by Jun 22 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter.

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

RunGuo Zang

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

3. We note that Figure 1 in your submission contain [map/satellite] images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright.

We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission:

1.    You may seek permission from the original copyright holder of Figure 1 to publish the content specifically under the CC BY 4.0 license. 

We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text:

“I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.”

Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission.

In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].”

2.    If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only.

The following resources for replacing copyrighted map figures may be helpful:

USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/

The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/

Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html

NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/

Landsat: http://landsat.visibleearth.nasa.gov/

USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/#

Natural Earth (public domain): http://www.naturalearthdata.com/

Please consider the concerns of the reviewer,and make revisions accordingly.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Also Provided as an Attachment

Review of PONE-D-20-08364: Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska

Summary:

This manuscript describes a study of Siberian Alder N fixation in two burn scars near Fairbanks, AK that differ in time since last fire and encompass a range of stand types, edaphic conditions, and (in one burn scar) fire severity. The authors find that nodule-level fixation activity was substantially higher in the younger (11 yr) burn scar than the older (40 yr) burn scar, but that alder abundances were higher on average in the older burn scar leading to negligible differences in total N fixation N inputs between the two burn scars on average. One of the strongest effects on alder N fixation inputs was stand dynamics (both pre- and post-fire) within the two burn scars. The general finding is that spots with high-severity fire that converted previous spruce stands to deciduous stands (but killed off alder rhizotomaceous stems) had very low N fixation inputs, but that similar-age stands that were previously deciduous forest and received less severe burning had relatively high N fixation inputs. The authors suggest that a complex suite of soil and topography characteristics, some of which are driven by the prior tree community and by fire severity, create conditions that help dictate variation in N fixation across the study site. They then note that these differences can lead to substantial inbalances (both positive and negative) in N budgets of post-fire boreal forest stands depending on how fire and stand dynamics impact N fixation inputs.

General Comments to Authors:

In general, this paper represents a thorough study of an important issue and encompasses an impressive amount of sampling and statistical work. In general, I don’t have many technical issues with the study; however, I think the presentation of the work in the manuscript needs to be substantially improved for it to be published. As currently written, the methods and, especially, the results are sufficiently convoluted that it’s difficult to make any reasonable sense of the authors’ findings. To this end, I’ve provided both general and specific comments that I hope will help the authors improve the clarity of the manuscript.

The objectives set out at the end of the introduction don’t fit particularly well with the rest of the study. The main objective of the study focuses on the effects of fire severity, but fire severity per se is only a piece of the results that you present. You also note the specific objective of looking at alder’s influence on the N balance of your sites, but that’s not even presented in the results (only the discussion currently). There is nothing specific in these objectives about the soil properties or stand dynamics that end up being the important (and in my opinion, very interesting) drivers of various N fixation variables.

In the methods, you implement quite a wide array of different statistical tools, which I think do a good job of catering to the specific questions/data that they are used for. That said, even statistically savvy readers likely won’t be familiar with all of these tools so I would suggest a bit more (concise) explanation on what each test/model is used for and why.

The biggest issue in my mind is that the structural presentation of the results section needs substantial revision. When one looks just at the subheadings within the results, the reader is presented with, in order: N fixation, Siberian Alder growth traits, Siberian alder growth (how is this different than the previous section), Siberian Alder density, Annual stand-level N fixation input, then Modeling Siberian alder growth traits, Siberian alder density, Siberian Alder growth, and Annual plant-level N fixation input. So most sections are duplicated and different results are presented in the two subheadings with the same name – this makes it extremely hard to keep track of the information the authors are trying to convey.

From what I can tell, the first set of Results subheadings present the results of the ANOVA and multiple regression models, then the latter set focus on the results of the SEM’s. If so, this is an almost prohibitively confusing way to present the results. It’s extremely difficult for the reader to know if the ANOVA/regression results for a given variable generally agree with the SEM models, and if they don’t agree, which one is best supported, etc.?

To improve the structure of the results section, I would suggest having a single section for each general response variable you’re interested in and reporting all of the ways that you looked at that response variable together in each of those sections.

Within each results paragraphs, I appreciate the attempt to briefly summarize the results of that paragraph into digestible sentences – I would suggest making these the topic (first) sentences for each paragraph so the reader knows what the main result is immediately and is then presented with the evidence to support that.

In the discussion, the presentation of the N-budget work sort of hits the reader by surprise. This is a substantial part of your analysis, so the description in 524-536 should go in the methods section (and be fully fleshed out) and the section in 537-542 should go in the Results.

Specific Comments to Authors:

L70: You should more clearly note that the Tierney study was done is a very different ecosystem (longleaf pine savannahs of the southeast U.S.) that only has small herbaceous N fixers.

L88: “from rare (or absent)” should be changed to just “from absent” as that represents the low end of the spectrum that contrasts with “very dense.”

L89: change “unpredictable” to “variable” – predicting these distributions is largely what the ultimate goal of this work is, so hopefully it’s predictable given the right information.

L126-138: the use of the non-parametric nearest alder formula to get alder densities will probably not be intuitive to most readers (i.e., why not just count the number of alder within a given area?) so it would be good to put in a quick justification for why you chose to measure alder distributions this way.

L134: explicitly state what “nearest individual” is nearest to (I assume the plot center, but it’s currently unclear).

L143: You use metric units elsewhere in the manuscript, so it would be best to convert inches to cm here.

L162-163: It’s not clear what “systematic random order” is. How is this different from a random order?

L172: The units that you present nodule-level N fixation in are on a per-hour basis. Conventionally people only incorporate seasonal variation in N fixation rates when they scale rates up to a per-year basis. Given that this is quite different than many/most other studies, it would be good to state why you accounted for seasonal variation for per-hour rates.

L185-188: Were temperature and moisture data taken at single time points? If so, how do we know that they were done so that time of day and day-to-day variation in air temp/aridity aren’t creating superfluous variation in these data?

L195: is this a 1m buffer around the perimeter of the crown of each individual or the base of the stem? That makes a big difference in sample area.

L196: What evidence do you have that nodules tend to be uniformly distributed within these areas? To me, this actually seems pretty unlikely but if you have evidence for this it would be good to present it.

L199: indicate that this is a plot-level estimate of “per-plant” live nodule biomass (which is why you don’t need alder abundances for this metric).

L204-205: it’s best practice to list out which variables were transformed.

L227-228: it seems to me that this is where the assumptions of seasonal variation in N fixation should come into play, and how that assumption is combined with the 24-hr/day assumption is important information to include.

L280: should read “was not significantly different than” since you used a two-tailed test.

L291: This is an interesting quirk in the results – that the effect size is stronger and variation smaller for the comparison between Spruce and Deciduous stands than it is between Spruce and Mixed stands, but the Spruce-Mixed comparison is the one that is significant. It would be good to note why this is (potentially a sample size effect?).

L293: I like the summary of the results in the paragraph here but I would urge caution on statements like “as time since fire increased” given that you don’t have a whole series of forest ages.

Fig 1. This image makes it look like most plots were placed right at the edge of the burn scar or the road (at least in BF). Is this just a visual trick due to the scale or were many actually near the edge? If so, this should be noted in the methods.

Fig 2. This figure would work better as multiple figures. I would keep all of the different response variables together, but make the global comparison between BF and WDF a figure, then the stand-level comparisons within each burn scar separate figures (3 total). As is, it’s a bit of information overload which makes it difficult for the reader to decipher what the important information to glean is.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: Review of PONE-D-20-08364.docx

PLoS One. 2020 Sep 2;15(9):e0238004. doi: 10.1371/journal.pone.0238004.r002

Author response to Decision Letter 0


28 Jul 2020

We have responded to each element of the decision letter by typing our response beneath the reviewer's comments (see below). A copy of our response is also attached as a Word document entitled "Response to Reviewers".

Review of PONE-D-20-08364: Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska

Summary:

This manuscript describes a study of Siberian Alder N fixation in two burn scars near Fairbanks, AK that differ in time since last fire and encompass a range of stand types, edaphic conditions, and (in one burn scar) fire severity. The authors find that nodule-level fixation activity was substantially higher in the younger (11 yr) burn scar than the older (40 yr) burn scar, but that alder abundances were higher on average in the older burn scar leading to negligible differences in total N fixation N inputs between the two burn scars on average. One of the strongest effects on alder N fixation inputs was stand dynamics (both pre- and post-fire) within the two burn scars. The general finding is that spots with high-severity fire that converted previous spruce stands to deciduous stands (but killed off alder rhizotomaceous stems) had very low N fixation inputs, but that similar-age stands that were previously deciduous forest and received less severe burning had relatively high N fixation inputs. The authors suggest that a complex suite of soil and topography characteristics, some of which are driven by the prior tree community and by fire severity, create conditions that help dictate variation in N fixation across the study site. They then note that these differences can lead to substantial inbalances (both positive and negative) in N budgets of post-fire boreal forest stands depending on how fire and stand dynamics impact N fixation inputs.

General Comments to Authors:

In general, this paper represents a thorough study of an important issue and encompasses an impressive amount of sampling and statistical work. In general, I don’t have many technical issues with the study; however, I think the presentation of the work in the manuscript needs to be substantially improved for it to be published. As currently written, the methods and, especially, the results are sufficiently convoluted that it’s difficult to make any reasonable sense of the authors’ findings. To this end, I’ve provided both general and specific comments that I hope will help the authors improve the clarity of the manuscript.

The objectives set out at the end of the introduction don’t fit particularly well with the rest of the study. The main objective of the study focuses on the effects of fire severity, but fire severity per se is only a piece of the results that you present. You also note the specific objective of looking at alder’s influence on the N balance of your sites, but that’s not even presented in the results (only the discussion currently). There is nothing specific in these objectives about the soil properties or stand dynamics that end up being the important (and in my opinion, very interesting) drivers of various N fixation variables.

We agree that the language used to describe our objectives was vague. We have made updates to the introduction which more accurately describe the original intent of this study. The effect of fire severity on alder density (and therefore N-input) was the main component of our hypothesis. However, we could not determine the effect of fire severity without first disentangling it from the effects of other predictor variables (soil properties, topography). We also needed to control for stand type and fire age, both of which figured prominently into our analysis. We have updated objective 1 to clarify how soil properties, topography, stand type, and fire age align with our hypothesis. Furthermore, we have changed objective 2 from an objective to a goal because doing so more clearly defines the purpose of our N-balance analysis.

We referred to “environmental characteristics” in the original text of the introduction (specifically objective 1), a term that is intended to capture topoedaphic variables (soil properties, topography). As such, our methods and results directly addressed that part of objective 1 (we measure and analyze the effect of soil properties and topographic characteristics on alder N-input). Regardless, we agree that “environmental characteristics” is not a clear term. We updated objective 1 to include our definition of environmental characteristics.

We have moved the N-balance material out of the Discussion and into the Methods and Results sections, as suggested below.

In the methods, you implement quite a wide array of different statistical tools, which I think do a good job of catering to the specific questions/data that they are used for. That said, even statistically savvy readers likely won’t be familiar with all of these tools so I would suggest a bit more (concise) explanation on what each test/model is used for and why.

We have added text that describes what each statistical tool is used for and why. We have also rearranged the methods and results sections which should make the validity of each statistical tool clearer.

The biggest issue in my mind is that the structural presentation of the results section needs substantial revision. When one looks just at the subheadings within the results, the reader is presented with, in order: N fixation, Siberian Alder growth traits, Siberian alder growth (how is this different than the previous section), Siberian Alder density, Annual stand-level N fixation input, then Modeling Siberian alder growth traits, Siberian alder density, Siberian Alder growth, and Annual plant-level N fixation input. So most sections are duplicated and different results are presented in the two subheadings with the same name – this makes it extremely hard to keep track of the information the authors are trying to convey.

We have rearranged and consolidated the results section for improved clarity.

From what I can tell, the first set of Results subheadings present the results of the ANOVA and multiple regression models, then the latter set focus on the results of the SEM’s. If so, this is an almost prohibitively confusing way to present the results. It’s extremely difficult for the reader to know if the ANOVA/regression results for a given variable generally agree with the SEM models, and if they don’t agree, which one is best supported, etc.?

We have rearranged the presentation of the results section by response variable (as suggested below) which addresses the disparate locations of statistical results.

To improve the structure of the results section, I would suggest having a single section for each general response variable you’re interested in and reporting all of the ways that you looked at that response variable together in each of those sections.

We have updated the results section so that each subheading is a response variable and a separate subheading was created for post-fire N-balance. The various statistical tools applied to each response variable are now summarized under a single subheading for each response variable.

Within each results paragraphs, I appreciate the attempt to briefly summarize the results of that paragraph into digestible sentences – I would suggest making these the topic (first) sentences for each paragraph so the reader knows what the main result is immediately and is then presented with the evidence to support that.

We updated the text according to this suggestion.

In the discussion, the presentation of the N-budget work sort of hits the reader by surprise. This is a substantial part of your analysis, so the description in 524-536 should go in the methods section (and be fully fleshed out) and the section in 537-542 should go in the Results.

Agreed. We have moved this text out of the discussion and into the methods and results sections, as specified. We added more detail, as necessary, within the methods and results descriptions. A new subheading (Post-fire N-balance) was adopted and used throughout the manuscript.

Specific Comments to Authors:

L70: You should more clearly note that the Tierney study was done is a very different ecosystem (longleaf pine savannahs of the southeast U.S.) that only has small herbaceous N fixers.

We have made the location of the Tierney study clearer, but we decided it was not necessary to mention the stature of herbaceous N-fixers in longleaf pine savannas. Though legumes are smaller than alder, their rates of N-fixation in this ecosystem rival that of Siberian alder in black spruce stands of our study.

L88: “from rare (or absent)” should be changed to just “from absent” as that represents the low end of the spectrum that contrasts with “very dense.”

We have changed the text accordingly.

L89: change “unpredictable” to “variable” – predicting these distributions is largely what the ultimate goal of this work is, so hopefully it’s predictable given the right information.

We have changed the text accordingly.

L126-138: the use of the non-parametric nearest alder formula to get alder densities will probably not be intuitive to most readers (i.e., why not just count the number of alder within a given area?) so it would be good to put in a quick justification for why you chose to measure alder distributions this way.

A brief justification of a nonparametric density estimator was added to the text. On a separate note: a citation was added with this edit but tracked changes needed to be turned off in order for the citation add-in tool to update the references section of the manuscript.

L134: explicitly state what “nearest individual” is nearest to (I assume the plot center, but it’s currently unclear).

We updated the definition of “nearest individual” in this sentence.

L143: You use metric units elsewhere in the manuscript, so it would be best to convert inches to cm here.

Agreed. We made this change in the text.

L162-163: It’s not clear what “systematic random order” is. How is this different from a random order?

We added a detailed explanation of the sampling method and removed the confusing term “systematic random order”. The intent of that term was to indicate our random selection of plots by stratum instead of by randomly selecting from among all plots regardless of stratum. Previous studies of N-fixation input by alder in Alaska were confounded by the seasonality of alder N-fixation when all plots within a stratum were sampled earlier in the summer than all plots within another stratum (Anderson and others 2004).

L172: The units that you present nodule-level N fixation in are on a per-hour basis. Conventionally people only incorporate seasonal variation in N fixation rates when they scale rates up to a per-year basis. Given that this is quite different than many/most other studies, it would be good to state why you accounted for seasonal variation for per-hour rates.

This was a typo in the original manuscript and has been corrected to indicate that seasonal variation in N-fixation was accounted for in plant-level and stand-level N-input, but not in hourly rates (as should be the case). Additional text was added to indicate that nodule-level N-fixation rates reflect peak N-fixation (July). These new descriptions of the methods accurately reflect the methods we employed in this study.

L185-188: Were temperature and moisture data taken at single time points? If so, how do we know that they were done so that time of day and day-to-day variation in air temp/aridity aren’t creating superfluous variation in these data?

We controlled for variation in soil moisture and temperature by time of day and day-to-day differences by sampling plots within each sampling stratum randomly throughout the 30-day sampling period, and throughout a single day. Soil moisture and temperature were not significantly correlated with day-of-year or time of day, and soil moisture and temperature did not vary among stand types within a burn scar or between burn scars. We have updated the text to indicate that soil moisture and temperature variation was controlled for based on our sampling design.

L195: is this a 1m buffer around the perimeter of the crown of each individual or the base of the stem? That makes a big difference in sample area.

The area of nodulation extended 1m away from the outermost ramets of an individual alder. We updated the text to make this definition clear. We incorporate the size of the area of nodulation when calculating N-fixation (from the plant to stand scale) and we discuss how variation in area of nodulation affects our results (including the effect of simply defining a limit for the purpose of sampling).

L196: What evidence do you have that nodules tend to be uniformly distributed within these areas? To me, this actually seems pretty unlikely but if you have evidence for this it would be good to present it.

We sampled hundreds of plants for N-fixation and nodule biomass and discovered that nodules were fairly uniform within 1 meter of the plant. Beyond 1 meter, nodule density and distribution became quite sparse. Because this is a personal observation, and because the term “uniformly distributed” is open to interpretation we have decided to delete this comment form the text.

L199: indicate that this is a plot-level estimate of “per-plant” live nodule biomass (which is why you don’t need alder abundances for this metric).

We added text to indicate that plot-level estimates of live nodule biomass are on a per-plant basis.

L204-205: it’s best practice to list out which variables were transformed.

We have added lists of transformed variables to the Statistical analysis section.

L227-228: it seems to me that this is where the assumptions of seasonal variation in N fixation should come into play, and how that assumption is combined with the 24-hr/day assumption is important information to include.

Agreed. We have updated the text to indicate that seasonal variation assumption was accounted for in combination with the 24-hr/day assumption. The previous description of our methods was unclear on this point, and the updated description reflects the fact that our methods of calculating plant-level N-fixation input (and by extension stand-level N-fixation input) matched conventional methods for doing so.

L280: should read “was not significantly different than” since you used a two-tailed test.

We have updated the text as suggested.

L291: This is an interesting quirk in the results – that the effect size is stronger and variation smaller for the comparison between Spruce and Deciduous stands than it is between Spruce and Mixed stands, but the Spruce-Mixed comparison is the one that is significant. It would be good to note why this is (potentially a sample size effect?).

Yes, low sample size may explain the lack of significant difference between these two stand types despite the effect size. We have added a note addressing this quirk and updated the supplemental tables to include stand type sample sizes.

L293: I like the summary of the results in the paragraph here but I would urge caution on statements like “as time since fire increased” given that you don’t have a whole series of forest ages.

Agreed. We have updated the text accordingly.

Fig 1. This image makes it look like most plots were placed right at the edge of the burn scar or the road (at least in BF). Is this just a visual trick due to the scale or were many actually near the edge? If so, this should be noted in the methods.

Yes, many study plots were relatively close to the burn scar edge. We added a note in the Study area section describing plot locations and the lack of overlap between plots and unnatural influences.

Fig 2. This figure would work better as multiple figures. I would keep all of the different response variables together, but make the global comparison between BF and WDF a figure, then the stand-level comparisons within each burn scar separate figures (3 total). As is, it’s a bit of information overload which makes it difficult for the reader to decipher what the important information to glean is.

We believe Fig 2 works better in tis current format because one can compare alder N input variables among stand types and across burn scars in a single figure. Therefore, we have not changed Fig 2.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 1

RunGuo Zang

7 Aug 2020

Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska.

PONE-D-20-08364R1

Dear Dr. Houseman,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

RunGuo Zang

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

accept

Reviewers' comments:

Acceptance letter

RunGuo Zang

19 Aug 2020

PONE-D-20-08364R1

Can Siberian alder N-fixation offset N-loss after severe fire? Quantifying post-fire Siberian alder distribution, growth, and N-fixation in boreal Alaska.

Dear Dr. Houseman:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Professor RunGuo Zang

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Descriptive statistics of the alder growth traits in the Wickersham Dome Fire.

    Statistics were calculated using the 2015 dataset (n = 21). Variables significantly different (p < 0.05) across stand types are shown in bold print. Different letters in the same row indicate significant differences among stand types at p < 0.05. NODBIO = live nodule biomass (g nodule m-2 plant-1); Height = mean ramet height (m); SLM = specific leaf mass (mg cm-2); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

    (DOCX)

    S2 Table. Total variance explained by a principal component analysis (PCA) of alder growth traits.

    The PCA was conducted with 2015 plots (n = 40) and includes: plant-level live nodule biomass (g nodule m-2 plant-1), mean ramet height (m), specific leaf mass (g cm-2), mean ramet diameter (cm), and a count of live and dead ramets per plant. Eigenvalue cutoff was set at 1.

    (DOCX)

    S3 Table. Descriptive statistics for alder growth traits across the region.

    Statistics were calculated with the 2015 dataset (n = 40) unless stated otherwise (2014 dataset, n = 200). Significant differences between the Boundary Fire and Wickersham Dome Fire are determined at p < 0.05 level and shown in bold font. Statistics are calculated for plots in which alder was present. NODBIO = live nodule biomass (g nodule m-2 plant-1); SLM = specific leaf mass (mg cm-2); Height = mean ramet height (m); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

    (DOCX)

    S4 Table. Descriptive statistics of the alder growth traits in the Boundary Fire.

    Statistics were calculated using the 2015 dataset (n = 19), unless stated otherwise (2014 dataset, n = 125). Variables significantly different (p < 0.05) across stand types are shown in bold print. Different letters among columns in the same row indicate significant differences among stand types at p < 0.05. NODBIO = live nodule biomass (g nodule m-2 plant-1); Height = mean ramet height (m); SLM = specific leaf mass (mg cm-2); MRD = mean ramet diameter (cm); LRPP = live ramets per plant; DRPP = dead ramets per plant; PCA1 = PCA axis 1 [plant-level live nodule biomass (+), mean ramet height (+), mean ramet diameter (+), and specific leaf mass (-)]; PCA2 = PCA axis 2 [number of live ramets per plant (+) and dead ramets per plant (+)]. Values reflect mean ± standard error.

    (DOCX)

    S1 File

    (ZIP)

    S2 File

    (ZIP)

    Attachment

    Submitted filename: Review of PONE-D-20-08364.docx

    Attachment

    Submitted filename: Response to Reviewers.docx

    Data Availability Statement

    The following DOIs all direct to the underlying data: doi:10.6073/pasta/7f04d011ba2a39b08b794611b54b15ca doi:10.6073/pasta/020191d3b9b72c88a8487b1684eba15c doi:10.6073/pasta/0600e58dea74dd5df84153af35da6f56 doi:10.6073/pasta/4694dfc87d322b4891a12e3c3fdabe18 doi:10.6073/pasta/a8acc1f2107944a9e9ad91974c7aff91 doi:10.6073/pasta/a5eed7ac3329a4aca7fb6e54185f0c50 doi:10.6073/pasta/705056665d58f1138d9707f262487482 doi:10.6073/pasta/f0b1cb6152f360c42a11db3d5cd2a61a doi:10.6073/pasta/7496cd1d2f43929266e7feca934d1621 doi:10.6073/pasta/37703e3d1a3aa6c41a491cbba91a3ce1.


    Articles from PLoS ONE are provided here courtesy of PLOS

    RESOURCES