Skip to main content
. 2020 Aug 14;12(8):891. doi: 10.3390/v12080891

Table 2.

Taxonomical (family level) compositions of the studied samples grouped according to various attributes. Table also denotes the Baltimore classifiers corresponding to each taxonomical family taxon and the host ranges, which were identified for the viral sequences contributing to the taxonomical family composite, based on the data in NCBI. The data are stratified according to sample type (S—oral swab, F—feces, G—guano), geographical location (M—Mediterranean, C—continental), landscape type (N—natural, H—with human activity/anthropogenic) and according to bat species (MS—M. schreibersii, MM—M. myotis, RF—R. ferrumequinum, ME—M. emarginatus, ES—E. serotinus, MB—M. blythii).

Families Host Range Genome Type Overall (%) Sample Type (%) Geographical Location Group (%) Landscape Type (%) Bat Species (%)
S F G M C N H RF MS MM ME MB ES Undetermined/Mixed
Iflaviridae Invertebrates (+)ssRNA 44.663 0.058 81.424 9.780 57.391 5.951 2.385 76.786 85.236 0.061 0.000 0.424 0.000 0.000 8.364
Siphoviridae Bacteria or archaea dsDNA 9.591 12.849 2.381 18.418 10.599 6.524 20.755 1.109 1.233 19.523 7.435 5.932 27.895 12.832 17.775
Podoviridae Bacteria or archaea dsDNA 7.352 7.828 3.198 12.944 7.971 5.470 12.604 3.361 1.884 9.364 3.770 2.119 24.211 8.407 13.224
Parvoviridae Vertebrates, Unclassified or unknown, Invertebrates ssDNA 5.996 11.810 0.125 12.040 7.920 0.143 7.412 4.920 3.216 0.000 0.105 0.000 0.000 0.000 10.446
Myoviridae Bacteria or archaea dsDNA 4.048 9.021 2.667 4.166 2.901 7.536 8.702 0.512 0.488 12.179 10.785 15.678 8.684 5.752 6.597
Retroviridae Vertebrates, Invertebrates ssRNA-RT 2.333 14.464 0.526 0.452 0.995 6.401 4.442 0.730 1.821 11.016 21.675 26.271 10.263 3.761 0.416
Mimiviridae Protozoa, Unclassified or unknown dsDNA 1.728 7.540 1.178 0.390 0.635 5.051 3.475 0.401 0.624 9.058 9.634 8.475 3.421 2.434 1.666
Ackermannviridae Bacteria or archaea dsDNA 1.477 6.040 0.396 1.329 0.054 5.808 2.514 0.690 0.687 3.611 10.471 0.424 0.263 6.858 1.553
Iridoviridae Vertebrates, Invertebrates dsDNA 1.126 5.905 0.326 0.508 0.561 2.843 2.156 0.343 0.818 5.263 6.911 13.136 5.263 1.106 0.482
Poxviridae Vertebrates, Invertebrates dsDNA 1.017 3.405 0.762 0.508 0.205 3.487 2.150 0.156 0.273 3.488 5.131 0.847 2.368 29.425 0.595
Phycodnaviridae Plants or algae dsDNA 0.878 3.443 0.652 0.264 0.286 2.679 1.799 0.178 0.310 4.162 4.188 2.542 1.842 2.655 0.922
Microviridae Bacteria or archaea ssDNA 0.620 0.385 0.296 1.155 0.740 0.256 1.025 0.312 0.178 0.612 0.628 0.000 0.263 0.221 1.148
Reoviridae Vertebrates, Invertebrates dsRNA 0.615 0.519 0.030 1.461 0.000 2.485 1.371 0.040 0.010 0.122 2.094 0.000 0.000 1.991 1.249
Permutotetraviridae Unclassified or unknown, Invertebrates (+)ssRNA 0.531 0.000 1.033 0.028 0.703 0.010 0.000 0.935 1.081 0.000 0.000 0.000 0.000 0.000 0.024
Inoviridae Bacteria or archaea ssDNA 0.443 0.692 0.015 0.946 0.545 0.133 0.949 0.058 0.000 0.796 1.047 5.508 0.000 0.221 0.821
Herpesviridae Vertebrates dsDNA 0.369 1.808 0.236 0.035 0.128 1.104 0.820 0.027 0.073 2.999 2.618 0.847 0.000 1.327 0.297
Picobirnaviridae Vertebrates, Unclassified or unknown dsRNA 0.306 0.000 0.000 0.842 0.000 1.237 0.697 0.009 0.000 0.000 0.000 0.000 0.000 0.000 0.720
Circoviridae Vertebrates, Unclassified or unknown, Fungi, Invertebrates ssDNA 0.293 0.000 0.000 0.807 0.387 0.010 0.680 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.690
Flaviviridae Vertebrates (+)ssRNA 0.273 1.866 0.020 0.049 0.027 1.022 0.551 0.062 0.220 1.958 1.780 0.000 0.000 2.212 0.042
Nodaviridae Vertebrates, Unclassified or unknown, Invertebrates (+)ssRNA 0.202 0.135 0.000 0.508 0.013 0.777 0.258 0.160 0.031 0.061 0.000 0.000 0.000 0.000 0.434
Dicistroviridae Invertebrates (+)ssRNA 0.202 0.038 0.000 0.543 0.003 0.808 0.205 0.200 0.010 0.000 0.000 0.000 0.000 0.000 0.464
Partitiviridae Plants or algae dsRNA 0.190 0.000 0.165 0.292 0.141 0.337 0.182 0.196 0.173 0.000 0.000 0.000 0.000 0.000 0.250
Totiviridae Protozoa, Invertebrates dsRNA 0.187 0.000 0.341 0.042 0.229 0.061 0.035 0.303 0.000 0.000 0.000 0.000 0.000 0.000 0.440
Astroviridae Vertebrates (+)ssRNA 0.175 0.327 0.000 0.362 0.003 0.695 0.398 0.004 0.000 0.979 0.105 0.000 0.000 0.000 0.309
Coronaviridae Vertebrates (+)ssRNA 0.154 0.038 0.000 0.410 0.010 0.593 0.053 0.232 0.010 0.000 0.000 0.000 0.000 0.000 0.351
Picornaviridae Vertebrates (+)ssRNA 0.134 0.000 0.000 0.369 0.003 0.532 0.211 0.076 0.000 0.000 0.000 0.000 0.000 0.000 0.315
Solemoviridae Plants or algae (+)ssRNA 0.114 0.000 0.005 0.306 0.000 0.460 0.012 0.191 0.000 0.000 0.000 0.000 0.000 0.221 0.262
Polydnaviridae Invertebrates dsDNA 0.089 0.654 0.000 0.007 0.064 0.164 0.152 0.040 0.026 0.367 1.257 3.390 0.789 0.000 0.006
Tymoviridae Plants or algae (+)ssRNA 0.073 0.000 0.000 0.202 0.000 0.297 0.170 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.173
Pithoviridae Protozoa, Unclassified or unknown dsDNA 0.053 0.192 0.045 0.014 0.013 0.174 0.105 0.013 0.010 0.184 0.419 0.424 0.000 0.000 0.065
Caulimoviridae Plants or algae dsDNA-RT 0.051 0.308 0.005 0.021 0.040 0.082 0.105 0.009 0.021 0.428 0.000 0.000 0.263 1.106 0.018
Virgaviridae Plants or algae (+)ssRNA 0.048 0.000 0.000 0.132 0.000 0.194 0.111 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.113
Baculoviridae Invertebrates dsDNA 0.043 0.231 0.005 0.028 0.010 0.143 0.088 0.009 0.016 0.428 0.209 0.000 0.000 0.000 0.030
Adenoviridae Vertebrates, Unclassified or unknown dsDNA 0.040 0.077 0.060 0.000 0.020 0.102 0.076 0.013 0.016 0.061 0.000 0.000 0.000 0.000 0.071
Metaviridae Invertebrates ssRNA-RT 0.035 0.212 0.005 0.014 0.034 0.041 0.082 0.000 0.010 0.428 0.000 0.000 0.263 0.442 0.012
Ascoviridae Invertebrates dsDNA 0.030 0.115 0.020 0.014 0.010 0.092 0.064 0.004 0.005 0.184 0.209 0.000 0.000 0.000 0.036
Luteoviridae Plants or algae (+)ssRNA 0.025 0.000 0.010 0.056 0.000 0.102 0.018 0.031 0.000 0.000 0.000 0.000 0.000 0.442 0.048
Tombusviridae Plants or algae (+)ssRNA 0.025 0.000 0.000 0.070 0.000 0.102 0.006 0.040 0.000 0.000 0.000 0.000 0.000 0.000 0.059
Alphatetraviridae Invertebrates (+)ssRNA 0.023 0.019 0.000 0.056 0.003 0.082 0.041 0.009 0.005 0.000 0.000 0.000 0.000 0.000 0.048
Peribunyaviridae Different eucaryonts, Vertebrates (-)ssRNA 0.020 0.000 0.000 0.056 0.010 0.051 0.029 0.013 0.000 0.000 0.000 0.000 0.000 0.000 0.048
Polycipiviridae Invertebrates (+)ssRNA 0.020 0.000 0.000 0.056 0.020 0.020 0.023 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.048
Bromoviridae Plants or algae (+)ssRNA 0.015 0.000 0.000 0.042 0.000 0.061 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036
Phenuiviridae Vertebrates, Unclassified or unknown, Invertebrates (-)ssRNA 0.015 0.000 0.000 0.042 0.000 0.061 0.035 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.036
Alloherpesviridae Vertebrates dsDNA 0.015 0.096 0.000 0.007 0.000 0.061 0.029 0.004 0.026 0.000 0.000 0.000 0.000 0.000 0.006
Leviviridae Bacteria or archaea (+)ssRNA 0.015 0.019 0.000 0.035 0.000 0.061 0.035 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.030
Marseilleviridae Protozoa, Unclassified or unknown dsDNA 0.013 0.077 0.005 0.000 0.003 0.041 0.018 0.009 0.005 0.061 0.209 0.424 0.000 0.000 0.000
Nudiviridae Invertebrates dsDNA 0.013 0.019 0.005 0.021 0.003 0.041 0.023 0.004 0.005 0.000 0.000 0.000 0.000 0.000 0.024
Rhabdoviridae Invertebrates, Plants or algae, Vertebrates, Unclassified or unknown (-)ssRNA 0.013 0.000 0.000 0.035 0.000 0.051 0.029 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.030
Genomoviridae Unclassified or unknown ssDNA 0.010 0.019 0.000 0.021 0.010 0.010 0.012 0.009 0.005 0.000 0.000 0.000 0.000 0.000 0.018
Potyviridae Plants or algae (+)ssRNA 0.008 0.058 0.000 0.000 0.003 0.020 0.012 0.004 0.005 0.000 0.105 0.424 0.000 0.000 0.000
Birnaviridae Vertebrates, Invertebrates dsRNA 0.008 0.000 0.000 0.021 0.000 0.031 0.018 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.018
Malacoherpesviridae Invertebrates dsDNA 0.008 0.058 0.000 0.000 0.007 0.010 0.012 0.004 0.000 0.061 0.105 0.424 0.000 0.000 0.000
Secoviridae Plants or algae (+)ssRNA 0.005 0.000 0.000 0.014 0.003 0.010 0.012 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.012
Hepeviridae Vertebrates (+)ssRNA 0.005 0.019 0.000 0.007 0.000 0.020 0.006 0.004 0.000 0.061 0.000 0.000 0.000 0.000 0.006
Betaflexiviridae Plants or algae (+)ssRNA 0.005 0.019 0.000 0.007 0.000 0.020 0.012 0.000 0.005 0.000 0.000 0.000 0.000 0.000 0.006
Nanoviridae Plants or algae dsDNA 0.003 0.000 0.000 0.007 0.003 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Spiraviridae Unclassified or unknown ssDNA 0.003 0.000 0.000 0.007 0.000 0.010 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Caliciviridae Vertebrates (+)ssRNA 0.003 0.000 0.000 0.007 0.000 0.010 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Bicaudaviridae Bacteria or archaea dsDNA 0.003 0.000 0.005 0.000 0.000 0.010 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Autolykiviridae Unclassified or unknown dsDNA 0.003 0.000 0.000 0.007 0.003 0.000 0.000 0.004 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Bornaviridae Vertebrates (-)ssRNA 0.003 0.019 0.000 0.000 0.003 0.000 0.006 0.000 0.000 0.061 0.000 0.000 0.000 0.000 0.000
Polyomaviridae Vertebrates dsDNA 0.003 0.000 0.000 0.007 0.003 0.000 0.006 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.006
Asfarviridae Vertebrates dsDNA 0.003 0.019 0.000 0.000 0.003 0.000 0.006 0.000 0.000 0.061 0.000 0.000 0.000 0.000 0.000
Unclassified or unknown Bacteria or archaea, Vertebrates, Different eucaryonts, Plants or algae, Unclassified or unknown, Invertebrates, Protozoa (-)ssRNA, Unclassified or unknown RNA, ssDNA, (+)ssRNA, dsDNA, dsRNA, Unclassified or unknown 14.238 9.598 4.060 30.041 7.278 35.409 22.759 7.765 1.453 12.362 9.110 12.712 14.211 18.584 29.114