Table 3.
Metadata summary of the sequenced pools. Table lists geographical locations (1–11), location groups (M—Mediterranean, C—continental), sample types (S—oral swab, F—feces, G—guano), types of landscape (N—natural, H—with human activity, anthropogenic), bat species examined (MS—Miniopterus schreibersii, MM—Myotis myotis, RF—Rhinolophus ferrumequinum, ME—Myotis emarginatus, ES—Eptesicus serotinus, MB—Myotis blythii), with total numbers of sequences, the numbers of viral sequences, and the zeroth- and first-order Hill diversity indices (0,1D) based on taxonomy and host range.
| No. | Landscape Type | Sample Type | Location | Location Group | Species | All Sequences | Viral Sequences (%) | 0DTax. Family | 1DTax. Family | 0DHost Range | 1DHost Range |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | N | F | 1 | C | MS | 7986 | 645 (8.077) | 22 | 0.210 | 7 | 0.335 |
| 2 | N | S | 1 | C | MS | 76,457 | 170 (0.222) | 15 | 0.090 | 6 | 0.307 |
| 3 | N | S | 1 | C | RF | 107,464 | 210 (0.195) | 17 | 0.109 | 6 | 0.218 |
| 4 | N | S | 9 | M | RF | 9988 | 747 (7.479) | 15 | 0.435 | 5 | 0.574 |
| 5 | N | S | 9 | M | MS | 2560 | 35 (1.367) | 7 | 0.192 | 5 | 0.414 |
| 6 | N | S | 9 | M | MB | 16,903 | 159 (0.941) | 12 | 0.138 | 6 | 0.314 |
| 7 | H | G | 2 | C | / | 78,222 | 1973 (2.522) | 35 | 0.255 | 7 | 0.315 |
| 8 | H | S | 2 | C | MM | 108,367 | 156 (0.144) | 16 | 0.112 | 6 | 0.280 |
| 9 | N | F | 4 | C | RF | 58,257 | 170 (0.292) | 12 | 0.292 | 6 | 0.603 |
| 10 | N | F | 4 | C | ES | 10,238 | 320 (3.126) | 17 | 0.158 | 6 | 0.269 |
| 11 | N | F | 4 | C | MS | 83,747 | 340 (0.406) | 20 | 0.154 | 7 | 0.236 |
| 12 | N | S | 4 | C | RF | 48,398 | 169 (0.349) | 12 | 0.152 | 6 | 0.320 |
| 13 | N | S | 4 | C | RF | 39,251 | 151 (0.385) | 14 | 0.134 | 7 | 0.262 |
| 14 | N | S | 4 | C | MS | 42,389 | 111 (0.262) | 17 | 0.076 | 7 | 0.248 |
| 15 | N | S | 4 | C | RF | 79,074 | 256 (0.324) | 20 | 0.093 | 7 | 0.253 |
| 16 | N | S | 4 | C | ES | 69,349 | 132 (0.19) | 15 | 0.081 | 7 | 0.227 |
| 17 | N | F | 11 | M | MS | 4168 | 15 (0.36) | 7 | 0.159 | 5 | 0.276 |
| 18 | N | F | 11 | M | MS | 6120 | 15 (0.245) | 8 | 0.137 | 3 | 0.364 |
| 19 | N | G | 11 | M | / | 23,648 | 1806 (7.637) | 23 | 0.214 | 7 | 0.435 |
| 20 | N | S | 11 | M | MS, MN | 39,015 | 157 (0.402) | 17 | 0.097 | 6 | 0.261 |
| 21 | N | S | 11 | M | MM | 40,471 | 262 (0.647) | 15 | 0.108 | 7 | 0.248 |
| 22 | N | S | 11 | M | MS | 7833 | 183 (2.336) | 10 | 0.194 | 5 | 0.440 |
| 23 | N | S | 11 | M | RF | 10,063 | 129 (1.282) | 14 | 0.145 | 6 | 0.362 |
| 24 | H | F | 7 | M | RF | 29,564 | 16,998 (57.496) | 7 | 0.779 | 4 | 0.857 |
| 25 | H | G | 7 | M | / | 10,662 | 2644 (24.798) | 21 | 0.232 | 7 | 0.472 |
| 26 | H | S | 7 | M | RF | 38,090 | 114 (0.299) | 8 | 0.272 | 5 | 0.517 |
| 27 | H | S | 7 | M | ME | 35,720 | 236 (0.661) | 18 | 0.109 | 6 | 0.247 |
| 28 | N | S | 8 | M | MB | 2860 | 13 (0.455) | 8 | 0.136 | 4 | 0.336 |
| 29 | N | S | 8 | M | MS | 13,045 | 196 (1.502) | 13 | 0.174 | 6 | 0.416 |
| 30 | N | F | 3 | C | MS | 43,707 | 2129 (4.871) | 17 | 0.140 | 7 | 0.345 |
| 31 | N | G | 3 | C | / | 42,904 | 1853 (4.319) | 40 | 0.175 | 7 | 0.206 |
| 32 | N | S | 3 | C | MS | 42,697 | 277 (0.649) | 19 | 0.095 | 7 | 0.230 |
| 33 | N | S | 3 | C | MM | 55,162 | 302 (0.547) | 20 | 0.102 | 7 | 0.235 |
| 34 | N | S | 3 | C | RF | 63,273 | 235 (0.371) | 16 | 0.106 | 6 | 0.267 |
| 35 | N | S | 3 | C | MS | 53,987 | 101 (0.187) | 14 | 0.125 | 5 | 0.285 |
| 36 | N | S | 3 | C | MM | 26,439 | 80 (0.303) | 14 | 0.130 | 5 | 0.333 |
| 37 | N | S | 10 | M | MB | 16,549 | 208 (1.257) | 11 | 0.156 | 7 | 0.351 |
| 38 | N | S | 10 | M | MS | 7997 | 160 (2.001) | 12 | 0.180 | 6 | 0.414 |
| 39 | H | F | 5 | M | MS, RF | 14,731 | 267 (1.813) | 14 | 0.121 | 6 | 0.202 |
| 40 | H | F | 5 | M | MS, RF | 4915 | 37 (0.753) | 9 | 0.165 | 6 | 0.326 |
| 41 | H | S | 5 | M | RF | 3220 | 36 (1.118) | 9 | 0.157 | 4 | 0.365 |
| 42 | N | G | 6 | M | / | 39,053 | 5116 (13.1) | 9 | 0.181 | 7 | 0.355 |
| 43 | N | S | 6 | M | MS | 51,000 | 214 (0.42) | 22 | 0.082 | 7 | 0.219 |