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. 2020 Sep 10;15(9):e0238650. doi: 10.1371/journal.pone.0238650

Resolution dependency of sinking Lagrangian particles in ocean general circulation models

Peter D Nooteboom 1,2,*, Philippe Delandmeter 1, Erik van Sebille 1,2, Peter K Bijl 3, Henk A Dijkstra 1,2, Anna S von der Heydt 1,2
Editor: Vanesa Magar4
PMCID: PMC7482921  PMID: 32911487

Abstract

Any type of non-buoyant material in the ocean is transported horizontally by currents during its sinking journey. This lateral transport can be far from negligible for small sinking velocities. To estimate its magnitude and direction, the material is often modelled as a set of Lagrangian particles advected by current velocities that are obtained from Ocean General Circulation Models (OGCMs). State-of-the-art OGCMs are strongly eddying, similar to the real ocean, providing results with a spatial resolution on the order of 10 km on a daily frequency. While the importance of eddies in OGCMs is well-appreciated in the physical oceanographic community, other marine research communities may not. Further, many long term climate modelling simulations (e.g. in paleoclimate) rely on lower spatial resolution models that do not capture mesoscale features. To demonstrate how much the absence of mesoscale features in low-resolution models influences the Lagrangian particle transport, we simulate the transport of sinking Lagrangian particles using low- and high-resolution global OGCMs, and assess the lateral transport differences resulting from the difference in spatial and temporal model resolution. We find major differences between the transport in the non-eddying OGCM and in the eddying OGCM. Addition of stochastic noise to the particle trajectories in the non-eddying OGCM parameterises the effect of eddies well in some cases (e.g. in the North Pacific gyre). The effect of a coarser temporal resolution (once every 5 days versus monthly) is smaller compared to a coarser spatial resolution (0.1° versus 1° horizontally). We recommend to use sinking Lagrangian particles, representing e.g. marine snow, microplankton or sinking plastic, only with velocity fields from eddying Eulerian OGCMs, requiring high-resolution models in e.g. paleoceanographic studies. To increase the accessibility of our particle trace simulations, we launch planktondrift.science.uu.nl, an online tool to reconstruct the surface origin of sedimentary particles in a specific location.

Introduction

Sinking particles are involved in fundamental processes in the ocean. They serve as a primary mode of carbon export out of the exogenic carbon pool and deliver sediment to the world ocean floor: An important archive for understanding the climate system. The lateral advection of the sinking particles by ocean currents complicates the estimation of downward particle fluxes captured by sediment traps [1], the paleoceanographic reconstructions based on sedimentary microplankton distributions [25], and the estimation of micro-plastic distributions in the ocean [6]. Initially buoyant micro-plastic in the ocean sinks when it gets biofouled and its density increases [7], meaning that a large fraction of the plastic in the ocean has already sunk to the ocean floor [8]. The lateral transport of sinking particles can be estimated using Ocean General Circulation Models (OGCMs) and Lagrangian tracking techniques [9]. The Lagrangian techniques are used to model the sinking particle trajectories in the modern ocean [1015], specifically for sinking microplankton [16, 17] and microplastic [18].

Where possible, these Lagrangian techniques make use of an eddying flow field. However, eddying simulations are not available for all applications to provide such a flow field. For example, model simulations of the geological past use OGCMs with at most 1° horizontal (non-eddying) resolution [1923]. The latter is due to the fact that palaeoclimate model simulations require coupled climate model simulations (because the atmospheric forcing is not known from observations) and long spin-up times (typically a few 1000 model years) in order to reach a reasonable climate equilibrium.

The spatial and temporal resolution of the underlying flow field generated by OGCMs will affect the spreading of particles in the Lagrangian tracking. It has already been shown that Lagrangian trajectories of neutrally buoyant particles are sensitive to the temporal resolution in an OGCM with ∼ 2° horizontal resolution [24], and the temporal resolution influences the divergence timescale of trajectories in an OGCM of 0.1° horizontal resolution [25].

The spatial resolution of the OGCM determines if the flow is eddying, which played an important role in simulations of sinking particles near the northern Gulf of Mexico [26] and in the Benguela region [13], and for passive tracers near Sellafield [27] and globally [28] (0.25° versus 1° resolution). Eddying OGCMs generate a different time-mean flow compared to non-eddying OGCMs which parameterise the eddy effects [29, 30]. The interplay between eddies and the mean flow is found to be important for the representation of internal variability of the flow (i.e. the variability of the system under constant atmospheric forcing) [31]. This results in a better representation of interannual or multidecadal variability [32] and the separation location of western boundary currents such as the Gulf Stream [33]. Additionally, eddies cause mixing of tracers (e.g. heat and salinity). The non-eddying OGCMs rely on parameterisations of this tracer mixing such as the Gent-McWilliams (GM) parameterisation [34, 35], which shows difficulties to represent this effect locally [36, 37].

In this paper, we will assess how the sinking Lagrangian particle trajectories vary for different temporal or spatial resolutions of an Eulerian OGCM. We investigate the effect of eddies on the particle trajectories. Moreover, we study whether a stochastic lateral diffusion of Smagorinsky [38] type could parameterise the effects of the eddies in the non-eddying OGCM. We use the same analysis as is applied in [17] about microplankton which is used for palaeoceanographic reconstruction (specifically dinoflagellate cysts). The results concern any type of application with sinking Lagrangian particles, such as the comparison of sediment trap data with OGCMs [15, 26] or the representation of sinking microplankton [16, 17] and sinking plastic [7].

We disseminate our results further with an interactive website: https://www.planktondrift.science.uu.nl. This online tool simulates the surface origin of particles that sink to the bottom of the present-day ocean. The tool can also be used to determine how the microplankton in the bottom sediments at any location of choice relates to the environment at these origin locations (e.g. temperature, salinity, primary productivity) in the present-day ocean (see also [17]).

Method

We make use of present-day global ocean model simulations of the Parallel Ocean Program (POP) with 0.1° (R0.1; eddying) and 1° (R1m; non-eddying) horizontal resolution to advect virtual particles (also used in [37, 39, 40]). The eddying POP version has a reasonably good representation of the modern circulation compared to other models at the same resolution [41]. Both versions of POP are configured to be as consistent as possible with each other, but there are some differences (see the supplementary material of [39]).

We apply the same particle tracking approach as in [17]. This means that we release particles at the bottom of the ocean every three days for more than a year, and compute their trajectories in the changing flow field back in time (similar to [9, 15, 17, 26]) until the particles reached the surface. We stop a particle if it reaches 10m depth. The particles are released on a 1° × 1° global grid. The resulting particle distributions allow us to investigate the statistics of particle ensembles, rather than single trajectories. Particle ensemble statsistics are often used in Lagrangian analysis [9], because of the chaotic nature of the particle trajectories [42]. While the particles are advected back in time, a constant sinking velocity wf is added to the particle trajectories. The addition of a constant sinking velocity to an advected particle has been shown to be a proper way to incorporate the effect of gravity on a sinking particle [43]. We used Parcels version 2.0.0 [44] to calculate the particle trajectories, which is compatible with the Arakawa B-grid that POP uses.

The sinking velocity of particles in the ocean varies substantially. The sinking speed wf of microplastics is on the order of 3.4-50 m day−1 [8], for single dinoflaggellate cysts wf ranges from 6−11 m day−1 [45], and the sinking speed can become several hundreds of meters per day for marine snow aggregates (e.g. 10-287 m day−1 [46]). The larger wf, the shorter the travel time of the particles will be and the less the particle distributions at the surface will spread. Here, we focus on two sinking speeds: wf = 6 and 25 m day−1, to study the dependence of the results on the sinking speed, i.e. we represent the sinking of individual dinoflagellate cysts and small aggregates, respectively. More scenarios of sinking speed wf were investigated in [17].

The particle trajectory is integrated using the velocity field of POP and a stochastic term parameterising the effect of unresolved processes on the velocity. This last term is equivalent to diffusion in Eulerian models [9] and is a function of the diffusivity ν. Here we define ν as a function of the mesh size (i.e. the size of the grid cell) and the flow shear, following the Smagorinsky [38] parameterisation, which is commonly used in OGCMs and Large Eddy Simulations (LES). This implies that the particle trajectories are computed by:

x(tΔt)=x(t)+ttΔtv(x,τ)dτ+cΔt+q2ν(x)Δt, (1)

with x(t) the three-dimensional position of the particle at time t, v(x,t) the flow velocity at location x and time t (linearly interpolated in space and time from the flow field), and c=(00wf)T the sinking velocity. The vertical part of the flow v can be relevant compared to the particle sinking velocity wf (see Fig 7 in [17]). The flow consists of two components in the non-eddying POP model: v=va+vb, where va is the Eulerian flow field that is solved by POP. vb is the bolus velocity from the GM parameterisation, which represents the flow that is responsible for the mixing of tracers along isopycnals [34, 35]. vb=0 in the eddying POP model.

The last term of Eq 1 is the horizontal diffusivity term (only used in the non-eddying model), where q=(R1R20)T represents (independent) white noise in the zonal and meridional direction, with mean μR1=μR2=0 and variance σR12=σR22=1, and

ν(x)=csA(ux)2+12(uy+vx)2+(vy)2, (2)

where A is the horizontal surface area of the grid cell where the particle is located, u=u(x) and v=v(x) are respectively the (depth dependent) zonal and meridional velocity components. As such, the magnitude of the stochastic noise depends on the local velocity field, and its variance increases linearly over the time that a particle is advected. The Smagorinsky viscosity depends strongly on the flow shear compared to other parameterisations [47].

The strength of the noise can be determined with the parameter cs ≥ 0. Multiple methods exist in LES to determine the value of cs in each application [48]. The velocity gradients (νcsA) in the non-eddying version of POP typically range from 10−9s−1 to 10−7s−1 and A ≈ 104 km2, so the estimated standard deviation of the zonal and meridional stochastic noise (σ^x(t),σ^y(t)) after 20 days (Δt ≈ 1.6⋅106s) range from 6cs km to 60cs km. These scales are similar to the mesoscale: 10-30 days and 10-100km for mesoscale eddies [49].

Altogether, we apply the particle tracking analysis in four different model configurations (see Table 1), and compare the distributions of particles at the ocean surface after the back-tracking from a single release location; 130 particles are used at every release location to determine the particle distributions. These configurations represent the differences between state-of-the-art, global OGCM resolutions of the past (1° horizontally and monthly model output) and the present-day (0.1° horizontally and model output on a daily scale). The single effect of model output with lower temporal resolution compared to the state-of-the-art present-day OGCMs is investigated in a separate configuration R0.1m.

Table 1. The configurations with simulations in varying OGCM resolutions.

Configuration resolution output diffusion remark
R0.1 0.1° once every 5 days cs = 0 Reference case, vb=0, eddying
R0.1m 0.1° monthly cs = 0 vb=0, eddying
R1m monthly cs = 0 non-eddying
R1md monthly cs ∈ [0.25, 0.5, 1.0, 1.5, 2.0, 5.0] non-eddying

We use three measures to compare the particle distributions between the configurations (see Fig 1b–1d): (i) the average lateral distance (km) travelled from the release location (along the red lines in Fig 1b), (ii) the surface area spanned by the particles approximated by the summed surface area of the 1° × 1° grid boxes (blue boxes in Fig 1c), and (iii) the Wasserstein distance Wd as a measure of difference between two distributions resulting from two simulations. The Wasserstein distance is the minimum distance that one has to displace the particles resulting from one simulation (along the dashed lines in Fig 1d) to transform it into another particle distribution (and is calculated with [50]).

Fig 1. Schematic illustration of (a) the back-tracking analysis and (b)-(d) the three measures which are used to compare the particle distributions at the ocean surface.

Fig 1

(a) Three-dimensional illustration: Particles are released at the bottom every three days for a period of around six years, back-tracked until they get close to the surface (10m depth), which results in a particle distribution at the surface. A map of (b) the average lateral distance (km) traveled from the release location (along the red lines), (c) the surface area (blue; km2) spanned by the particle distribution (approximated by the summed surface area of the 1° × 1° blue boxes), (d) the Wasserstein distance (Wd; km), which is the minimum distance that one has to displace the particles (along the dashed lines) to transform one distribution into another distribution.

Results

We first analyse the overall differences between the configurations R0.1m, R1m, R1md and the reference configuration R0.1 in terms of the three measures described above (see Fig 1). Thereafter, we show specific release locations to explain why the configurations with lower spatial resolution do or do not provide similar solutions to the reference configuration R0.1.

Global analysis

The average lateral travel distances of the particles are globally different between the four configurations (Fig 2). In the configuration with lower spatial resolution R1m, the average lateral displacement is more extreme compared to the reference configuration (i.e. it is larger in regions with relatively large displacement and lower in regions with low displacement; Fig 2c). The average travel distance in R0.1m is similar to the reference case R0.1 (see Fig 2d for the global averages).

Fig 2.

Fig 2

(a), (b), (c) The average horizontal distance between the release location and the final back-tracked location at the ocean surface with wf = 6 m day−1 respectively in configuration R0.1, R1, R1md with diffusion strength cs = 2.0 (see Fig 4 for R0.1m). (d) Global averaged lateral travel distance in all configurations (for several values of cs in R1md). wf = 6 m day−1 in black and wf = 25 m day−1 in red.

The average lateral displacement becomes globally less ‘extreme’ (especially the Southern Ocean peaks are lower) if the Smagorinsky diffusion is added to the flow dynamics in R1md compared to R1m (Fig 2c). The less extreme pattern of the travel distances explains why the globally averaged lateral travel distance is minimal at cs = 0.25 (for wf = 6 m day−1 in Fig 2d), and not at cs = 0. The coefficient cs influences the lateral displacement in two ways. First, more displacement is added per time step if the noise is stronger (for larger cs), and the lateral displacement will on average be larger for larger cs. Second, the noise will be larger in areas with strong flow (u and v in Eqs 1 and 2). Hence, for small cs the noise is large enough for the particles to travel outside of the areas with a relatively strong flow and large displacement (such as in the Southern Ocean), such that the globally averaged lateral displacement is lower than for cs = 0.

The surface area spanned by the particle distributions (Fig 1b) is often smaller in R0.1m compared to R0.1, as can be seen from the global average of this measure (Fig 3d). The lower surface area could be explained by the tendency of nearby particles to follow more similar pathways in R0.1m than in R0.1 (see animation S1 Video) [25]. As a result, the particles will end up in clusters closer to each other at the surface. Hence, the surface area of the particle distributions is on average smaller in R0.1m compared to R0.1.

Fig 3.

Fig 3

(a), (b), (c) The surface area of the back-tracked particle distributions with wf = 6 m day−1 respectively in configuration R0.1, R1, R1md with diffusion strength cs = 2.0 (see Fig 5 for R0.1m). (d) Globally averaged surface area of the particle distributions in all configurations (for several values of cs in R1md). wf = 6 m day−1 in black and wf = 25 m day−1 in red.

Mesoscale eddies are abundant in the reference configuration R0.1, while they are absent in the low spatial resolution configuration R1m. Therefore, tracked particles tend to end up in a much more confined area at the surface in the lower resolution configuration R1m than in the reference configuration (Fig 3d). The stochastic noise in R1md induces fluctuations in the particle trajectories, leading to a larger surface area of the particle distributions. In R1md, the global average surface area of the particle distributions increases monotonically with increasing magnitude of the noise (cs).

Interestingly, the value of cs that approximates configuration R0.1 (cs ≈ 3.5) and R0.1m (cs ≈ 2) best, is the same for both sinking velocities 6, 25 m day−1. These values of cs must result in a similar scale of the flow fluctuations (σx, σy) in configurations R0.1 and R0.1m. It also indicates that, given cs, the subgrid-scale parameterisation performance is similar for both sinking velocities. Nevertheless, the particle distributions match better with the reference configuration if the sinking velocity is higher (according to the Wd in Fig 2), because a lower particle travel time leads to less spread of the particle trajectories and a lower lateral displacement.

Locally, the surface area of the particle distributions shows a different pattern in R1md compared to the reference R0.1 (Fig 3a vs Fig 3c). In contrast to the magnitude of the noise, the direction of the noise vector does not depend on the flow field (it is horizontally isotropic). Therefore, the surface area of the particle distributions in configuration R1md is overestimated in the tropics compared to the reference configuration R0.1, where the flow is mostly zonal. Interestingly, this measure remains low in areas with sinking waters for both configurations R0.1 and R0.1md, such as the Ross sea and the Weddell sea (see Fig 2 in [51]).

The loss of information in R0.1m due to the monthly averaging of the flow fields in R0.1 is clearer in the difference plots of the surface area and travel distance of the particle distributions (Fig 4). The surface area of the particle distributions is mostly lower in R0.1m compared to R0.1 (Fig 4a). The particles tend to be advected by a similar flow field in R0.1m if they are located close to each other. Hence, groups of particles are trapped in the same eddies, and travel from origin locations at the ocean surface which are closer to each other. This could result in notably different back-tracked particle distributions, especially if the shear of the flow field is high (see for instance the location 45.5°S, 39.5°E on planktondrift.science.uu.nl or S1 Fig for two similar locations with opposite behaviour).

Fig 4. The differences between R0.1m and R0.1 (R0.1m subtracted from R0.1) in terms of (a) the surface area of the particle distributions (Fig 1c) and (b) the average travel distances of the particle distributions (Fig 1b).

Fig 4

In general, we find that a reduction of the temporal resolution (R0.1m vs. the reference case R0.1) does not have a major effect on the Wasserstein distance Wd (Fig 5). The travel time of the particles is perhaps too short (at most a few years) for the errors in R0.1m to grow substantially, and remains smaller compared to R1m. The global average Wd between R0.1m and the reference case (Wd(R0.1, R0.1m)) is slightly larger compared to the check of R0.1 with itself (the global average Wd(R0.1, R0.1); dashed versus dotted in Fig 5d). In this ‘check’, we did the same analysis as in R0.1, but with a 1.5 day shift of the particle release times. As a result, the particle distributions will be different in the check, but as similar as one could get to the particle distributions of R0.1 in the other configurations.

Fig 5. The global Wasserstein distance (Wd) as a distance measure between the back-tracked particle distributions of the configurations from Table 1.

Fig 5

Wd for sinking speed wf = 6 m day−1 between the eddying reference configuration R0.1 and (a) the eddying R0.1m with monthly model output, (b) the non-eddying R1m, (c) the non-eddying R1md with diffusion strength cs = 2. (d) Global average Wd in all configurations (for several diffusion strengths cs in R1md). wf = 6 m day−1 in black and wf = 25 m day−1 in red. The globally averaged Wd of configuration R0.1 with itself is a check (Wd(R0.1, R0.1); only for wf = 6 m day−1), as the globally averaged Wd is shown between the particle distribution of the same configuration, but with a 1.5-day shift of the particle release times.

On the other hand, altering the spatial resolution in R1m and R1md does lead to different values of the Wd. We find that any value of cs > 0 reduces the Wd by a similar amount, but the Wd is the smallest for cs = 2 with both sinking speeds wf = 6, 25 m day−1 (Fig 5d). For cs = 2, the approximated zonal and meridional standard deviation of the diffusion (σ^x(t), σ^y(t)) ranges between 8km and 80km in 20 days (depending on the strength of the local velocity gradients in the model). At this value of cs, the magnitude of the fluctuations from the eddies lead to the optimal parameterisation, such that the particle distributions spread enough to better match with the particle distributions in the reference case. However, we find that the global averaged Wd for cs = 2 is approximately eight times larger compared to the check (Wd(R0.1, R0.1)) for wf = 6 m day−1, which implies that the particle distributions differ substantially from the reference case. In all configurations R, Wd(R0.1, R) is lower in areas where the divergence of particle trajectories is relatively small, such as areas of relatively low eddy kinetic energy (e.g. in the gyres; see supporting information), and in areas where the travel time of the particles is relatively short because of the shallow bathymetry (or the particles sink faster).

Regional analysis

In general, the particle trajectories in the lower spatial resolution configuration R1m without diffusion are different compared to the trajectories in the reference configuration R0.1, because these trajectories lack the fluctuations provided by eddies and hence they spread less. The only trajectory spread in the non-eddying R1m is caused by flow variability on a larger timescale, such as seasonality. We focus here on some specific locations to see how this can lead to different particle distributions.

If Smagorinsky diffusion is added to the dynamics of the flow (R1md), the fluctuations from the eddies are parameterised and the trajectories spread more. The North Pacific gyre is a location where this parameterisation works well (Fig 6a). Within the gyre, the diffusion is relatively low in the reference configuration and the eddies spread the particle trajectories uniformly in all directions. Adding fluctuations to the flow field in R1md using stochastic noise captures the spread of these eddies in R0.1 well. Occasionally the parameterisation also works well in locations with larger shear and eddy activity compared to the North Pacific gyre. For example, for a location in the Antarctic Circumpolar Current (ACC, Fig 6b), the mean flow field (averaged over 6 years) in R1m is similar to the mean flow field in R0.1. The stochastic noise can again adequately capture the effect of fluctuations provided by the eddies on the particle distributions.

Fig 6. Comparison between reference configuration R0.1 (red), configurations R1m (yellow) and R1md with cs = 2 (blue) at four different locations (yellow on top of blue, blue on top of red; wf = 6 m day−1). Each distribution consists of ∼ 160 particles.

Fig 6

The release locations at (a) 40.5°N, 140.5°W and respectively 4601 and 4542 m depth in R0.1 and R1m, (b) 49.5°S, 119.5°W and respectively 3122 and 3249 m depth in R0.1 and R1m, (c) 44.5°S, 20.5°E and respectively 4249 and 4249 m depth in R0.1 and R1m, (d) 52.5°S, 142.5°E and respectively 3070 and 2916 m depth in R0.1 and R1m.

However, it is well known that non-eddying OGCMs do not get the mean flow field right in all of the locations, because the eddies influence the mean flow field through rectification [52]. The Agulhas region is such an example where the mean flow field is different in R1m compared to the reference case R0.1 (Fig 6c). The analysis in R1md provides a particle distribution which only comprises a subset of the particle distribution from the analysis in R0.1. If the strength of the noise (cs) is increased here, at most the spread of the particle distribution increases, but one will not find that any particle originates from the area around Madagascar.

Finally, the addition of spatially dependent noise has one more unrealistic property: The particles tend to artificially accumulate in areas with relatively low horizontal gradients, and hence weak stochastic noise [5355]. A result of this effect can be found in another location near the ACC, South of Australia (Fig 6d). At this location, configuration R1md results in two clusters of particles, which are separated by an area with high shear, and where the noise is large, while the particles in the reference configuration R0.1 clearly form one (more connected) distribution.

Discussion

We assessed the variations of Lagrangian trajectories of sinking particles in flow fields which were generated by OGCMs of different resolutions. We released sinking particles at the bottom of the ocean, tracked them backwards in time until they reached the surface, and investigated how the particle distributions at the ocean surface depend on the OGCM resolution.

If the model output of the high-resolution OGCM is averaged from 5-daily to monthly data, the particle tracking analysis provides similar results in most cases. However, in some specific regions with large shear, we find notable differences of the back-tracked particle distributions at the ocean surface.

Overall, the sinking Lagrangian particles give unrealistic results in the non-eddying models, because (1) the back-tracked distributions show too little spread due to the absence of ocean eddies and (2) these models often do not capture the mean flow fields correctly (as shown in e.g. [29, 30, 33]). Lateral stochastic diffusion in the low-resolution configuration (re-)introduced part of the eddy fluctuations and hence increased the relative dispersion of particle trajectories, and increased the lateral travel distance (Fig 2) and the spread (Fig 3) of the back-tracked particle distributions. Hence this method is promising for locations where the low resolution OGCMs capture the mean flow field well. However, the particle distributions are often distant from the distributions of the reference configuration, as is shown from the Wasserstein distance in Fig 5, which implies that the surface origin location is different between the coarse and high resolution models. Therefore, overall the Smagorinsky diffusion is insufficient to parameterise the eddies in most areas.

Altogether, we recommend to compute the sinking Lagrangian particle trajectories only in eddying OGCMs. We used the Smagorinsky parameterisation in this paper as a first attempt to represent the subgrid-scale processes if the eddies are absent in the flow. Other types of parameterisations could be applied. Several other parameterisations for eddy-induced mixing of tracers are available in POP [56]. However, the improvement of either the Eulerian or Lagrangian parameterisation of the subgrid scale variability in the flow remains a challenge in ocean modelling [57].

These conclusions have implications for Lagrangian particles in paleoceanographic models. OGCMs used in most paleo studies lack the eddying flow characteristics and do not generate a locally representative time mean flow for the time period of interest. Since Lagrangian particles use the local flow field, they require eddying paleoceanographic models that better represent the time mean flow for the considered time period. For the application of Lagrangian particle tracking techniques in paleoceanographic models, which are usually not eddying, we recommend to test model results first against independent information of ocean flow, such as biogeographic patterns of microplankton [58, 59]. In turn, it should be appreciated that a regional paleoceanographic signal could be influenced by flow characteristics which are not represented by the non-eddying models. This represents a cautionary tale in putting too much confidence in flow fields from low-resolution fully coupled GCM simulations.

Future work could investigate the sinking Lagrangian particles in other configurations with different OGCM resolutions. The model output of configuration R0.1 could be coarsened to a 1° grid before the back-tracking analysis, to separate out the effects on the Lagrangian analysis of (a) a coarsened grid (see also [60, 61]) and (b) a lower resolution of the underlying Eulerian model. Moreover, particle trajectories could be sensitive to the vertical resolution of the OGCM (e.g. [62, 63]).

When models do not resolve the so-called internal Rossby deformation radius (about 50 km at midlatitudes), no eddies can be represented. When the model grid scale is only slightly smaller than the deformation radius, say 25 km at midlatitudes, eddies form but their interaction is not fully captured; such a model is called ‘eddy permitting.’ Only for models at about 1 km horizontal midlatitude resolution (so-called eddy-resolving models), eddy interactions are fully resolved. The 10 km resolution POP model, as is used here (R0.1), is therefore often called ‘strongly eddying.’ An OGCM of ∼1km resolution also has a better representation of the spatial/temporal submesoscale that can be important for sinking Lagrangian particles which represent the carbon flux to the ocean bottom [64]. Although the mesoscale flow contains most of the energy that is responsible for the tracer dispersion [65], submesoscale (1-20km) dynamics have proven to be of importance for the vertical advection of iron in specific regions with strong flow-bathymetric interactions [66]. Future work could analyse the transport of sinking particles in models with higher resolutions, and with models which better represent internal tides [67] or improved interaction of the bottom-flow with topography [68].

The effect of eddies on the flow should be appreciated outside the physical oceanography community. In order to facilitate increased understanding on this matter, interactively disseminate our results, and allow users to self-explore and verify the surface-ocean location of origin for sedimentary particles, we developed the website planktondrift.science.uu.nl containing our results.

We also tested an additional configuration without the bolus velocity in the non-eddying POP model (i.e. the same as R1md and R1m, but where vb=0). The results for this configuration are very similar to the results that are obtained in configuration R1md and R1m in this paper. The bolus velocity is weaker compared to the Eulerian flow velocity (typically vb is approximately 5% of va at the surface layer). Parameterisations like GM improve the temperature and salinity distribution in Eulerian models. GM is a type of ‘extra advection’ which assumes that dynamic tracers such as temperature and salinity mix along surfaces of contstant potential density [35]. However, GM does not make a relevant difference if Lagrangian particles are applied offline to represent other tracers. The results for this additional configuration can be found and downloaded from the planktondrift.science.uu.nl website.

The website contains the results which are presented in this paper, for every release location in every configuration. Users of the tool can choose a location at the bottom of the ocean, see where the sinking particles originated from for different parameters (e.g. the sinking speed wf, or the magnitude of the noise cs), and download these origin locations. The website allows anyone who works with e.g. sedimentary microplankton assemblages or plastic to see how the sinking particles could be displaced laterally, and what the environment (e.g. sea surface temperature and salinity) is at the displaced location using POP or other OGCMs. Hence, the advection bias [17] of the sedimentary assemblages can be determined in the present-day ocean.

Supporting information

S1 Fig. Comparison between the reference configuration R0.1 (red) and the temporally averaged configuration R0.1m (blue) at two release locations (wf = 6 m day−1).

(a) 45.5°S, 39.5°E at 2068m depth (red on top of blue) (b) 46.5°S, 42.5°E at 2238m depth (blue on top of red).

(TIF)

S2 Fig. Geographic plot of the time mean eddy kinetic energy at the surface.

The eddy kinetic energy is defined as 12u·u¯, where the bar denotes the time mean and u′ the deviation from the time mean velocity vector u (so u(x,t)=u¯(x)+u(x,t)).

(TIF)

S1 Video. Animation (back in time) of particle back-tracking analysis (wf = 6 m day−1) with particle release at the Uruguayan margin (47.9°E and 37.15°S, ∼4800m depth).

(a) the configuration R0.1 with 5-daily model ouput and (b) the configuration R0.1m with monthly model output.

(MOV)

Acknowledgments

The code used for this work and the results are distributed under the MIT license and can be found at the website https://github.com/pdnooteboom/PO_res_error. PN thanks Jasper de Jong and Daan Reijnders for their help with the implementation of the Smagorinsky parameterisation in Parcels.

Data Availability

All the code that can be used to reproduce the figures/results in the manuscript can be found on github: https://github.com/pdnooteboom/PO_res_error. The results of this paper can also be accessed on planktondrift.science.uu.nl.

Funding Statement

This work was funded by the Netherlands Organization for Scientific Research (NWO), Earth and Life Sciences, through project ALWOP.207. The use of the SURFsara computing facilities was sponsored by NWO-EW (Netherlands Organisation for Scientific Research, Exact Sciences) under the project 17189. The European Research Council under the European Community’s Seventh Framework Program provided funding for this work by ERC Starting Grant #802835 (OceaNice) to PKB. PD and EvS are supported through funding from the European Research Council (ERC) under the European Union Horizon 2020 research and innovation programme (grant agreement no. 715386, TOPIOS).

References

  • 1. Buesseler KO, Antia AN, Chen M, Fowler SW, Gardner WD, Gustafsson O, et al. An assessment of the use of sediment traps for estimating upper ocean particle fluxes. J Mar Res. 2007;65:345–416. [Google Scholar]
  • 2. Weyl PK. Micropaleontology and ocean surface climate. Science (80-). 1978;202:475–481. [DOI] [PubMed] [Google Scholar]
  • 3. Honjo S, Spencer DW, Farrington JW. Deep Advective Transport of Lithogenic Particles in Panama Basin. Science (80-). 1982;216:516–518. [DOI] [PubMed] [Google Scholar]
  • 4. Fahl K, Nöthing E.M. Lithogenic and biogenic particle fluxes on the Lomonosov Ridge (central Arctic Ocean) and their relevance for sediment accumulation: Vertical vs. lateral transport. Deep Res Part 1. 2007;54:1256–1272. [Google Scholar]
  • 5.Dale, B. Palynology principles and applications. In: Palynol. Princ. Appl.; 1996. p. 1249–1275.
  • 6. Jalón-Rojas I, Wang Xh, Fredj E. Technical note: On the importance of a three-dimensional approach for modelling the transport of neustic microplastics. Ocean Sci. 2019;15:717–724. [Google Scholar]
  • 7. Kooi M, Nes EHV, Scheffer M, Koelmans AA. Ups and Downs in the Ocean: Effects of Biofouling on Vertical Transport of Microplastics. Environ Sci Technol. 2017;51:7963–7971. 10.1021/acs.est.6b04702 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8. Koelmans AA, Kooi M, Law KL, van Sebille E. All is not lost: deriving a top-down mass budget of plastic at sea. Environ Res Lett. 2017;12. [Google Scholar]
  • 9. van Sebille E, Griffies SM, Abernathey R, Adams TP, Berloff P, Biastoch A, et al. Lagrangian ocean analysis: Fundamentals and practices. Ocean Model. 2018;121(July 2016):49–75. [Google Scholar]
  • 10. Zhongfeng Q, Doglioli AM, Carlotti F. Using a Lagrangian model to estimate source regions of particles in sediment traps. Sci China Earth Sci. 2014;57(10):2447–2456. [Google Scholar]
  • 11. Siegel DA, Deuser WG. Trajectories of sinking particles in the Sargasso Sea: modeling of statistical funnels above deep-ocean sediment traps. Deep Res 1. 1997;44(9):1519–1541. [Google Scholar]
  • 12. Siegel DA, Fields E, Buesseler KO. A bottom-up view of the biological pump: Modeling source funnels above ocean sediment traps. Deep Res Part 1. 2008;55:108–127. [Google Scholar]
  • 13. Monroy P, Drótos G, Hernández-García E, López C. Spatial Inhomogeneities in the Sedimentation of Biogenic Particles in Ocean Flows: Analysis in the Benguela Region. J Geophys Res Ocean. 2019;124(May):1–19. [Google Scholar]
  • 14. Waniek J, Koeve W, Prien RD. Trajectories of sinking particles and the catchment areas above sediment traps in the northeast. J Mar Res. 2000;58:983–1006. [Google Scholar]
  • 15. Claudia Wekerle, Thomas Krumpen, Tilman Dinter, Wilken-jon von Appen, Morten Hvitfeldt Iversen, and Ian Salter. Properties of Sediment Trap Catchment Areas in Fram Strait: Results From Lagrangian Modeling and Remote Sensing. Front. Mar. Sci., 5(November), 2018. [Google Scholar]
  • 16. van Sebille E, Scussolini P, Durgadoo JV, Peeters FJC, Biastoch A, Weijer W, et al. Ocean currents generate large footprints in marine palaeoclimate proxies. Nat Commun. 2015;6:6521 [DOI] [PubMed] [Google Scholar]
  • 17. Nooteboom PD, Bijl PK, Sebille EV, Von Der Heydt AS, Dijkstra HA. Transport Bias by Ocean Currents in Sedimentary Microplankton Assemblages: Implications for Paleoceanographic Reconstructions. Paleoceanogr Paleoclimatology. 2019;34. [Google Scholar]
  • 18. Hardesty BD, Harari J, Isobe A, Lebreton L, Maximenko N, Potemra J, et al. Using Numerical Model Simulations to Improve the Understanding of Micro-plastic Distribution and Pathways in the Marine Environment. Front Mar Sci. 2017;4(March):1–9. [Google Scholar]
  • 19. Baatsen MLJ, von der Heydt AS, Kliphuis M, Viebahn J, Dijkstra HA. Multiple states in the late Eocene ocean circulation. Glob Planet Change. 2018;163(February):18–28. [Google Scholar]
  • 20. Hutchinson DK, Boer AMD, Coxall HK, Caballero R, Nilsson J, Baatsen M. Climate sensitivity and meridional overturning circulation in the late Eocene using GFDL CM2. 1. Clim Past. 2018;14(2016):789–810. [Google Scholar]
  • 21. Baatsen M, von der Heydt AS, Huber M, Kliphuis MA, Bijl PK, Sluijs A, et al. Equilibrium state and sensitivity of the simulated middle-to-late Eocene climate. Clim Past Discuss. 2018;(April):1–49. [Google Scholar]
  • 22. Lunt DJ, Jones TD, Heinemann M, Huber M, Legrande A, Winguth A, et al. A model—data comparison for a multi-model ensemble of early Eocene atmosphere—ocean simulations: EoMIP. Clim Paste. 2012;8:1717–1736. [Google Scholar]
  • 23. Haywood AM, Hill DJ, Dolan AM, Bragg F, Chan W, Chandler MA, et al. Large-scale features of Pliocene climate: results from the Pliocene Model Intercomparison Project. Clim Past. 2013;9:191–209. [Google Scholar]
  • 24. Valdivieso Da Costa M, Blanke B. Lagrangian methods for flow climatologies and trajectory error assessment. Ocean Model. 2003;6:335–358. [Google Scholar]
  • 25. Qin X, van Sebille E, Sen Gupta A. Quantification of errors induced by temporal resolution on Lagrangian particles in an eddy-resolving model. Ocean Model. 2014;76:20–30. [Google Scholar]
  • 26. Liu G, Bracco A, Passow U. The influence of mesoscale and submesoscale circulation on sinking particles in the northern Gulf of Mexico. Elem Sci Athropocene. 2018;6(36). [Google Scholar]
  • 27. Magne Simonsen, Øyvind Saetra, Pål Erik, Ole Christian, Hilde Kristin, Brit Salbu, Hilde Elise Heldal, and Justin P Gwynn. The impact of tidal and mesoscale eddy advection on the long term dispersion of 99Tc from Sellafield. J. Environ. Radioact., 177:100–112, 2017. [DOI] [PubMed] [Google Scholar]
  • 28. Kristofer Döös, Volfango Rupolo, and Laurent Brodeau. Dispersion of surface drifters and model-simulated trajectories. Ocean Model., 39:301–310, 2011. [Google Scholar]
  • 29. Holland WR. The role of mesoscale eddies in the general circulation of the ocean—Numerical experiments using a wind-driven quasi-geostrophic model. Am Meteorol Soc. 1978;8:363–392. [Google Scholar]
  • 30. Berloff P, Hogg AM, Dewar W. The Turbulent Oscillator: A Mechanism of Low-Frequency Variability of the Wind-Driven Ocean Gyres. Am Meteorol Soc. 2007;37:2363–2386. [Google Scholar]
  • 31. Penduff T, Juza M, Barnier B, Zika J, Dewar W, Treguier AM, et al. Sea Level Expression of Intrinsic and Forced Ocean Variabilities at Interannual Time Scales. J Clim. 2011;24:5652–5670. [Google Scholar]
  • 32. Bars DL, Viebahn JP, Dijkstra HA. A Southern Ocean mode of multidecadal variability. Geophys Res Lett. 2016;43:2102–2110. [Google Scholar]
  • 33. Hecht MW, Smith RD. A Review of North Atlantic Ocean Modeling in an Eddying Regime. Geophys Monogr Ser. 2013;177:108–109. [Google Scholar]
  • 34. Gent PR, McWilliams JC. Isopycnal mixing in ocean circulation models. J Phys Oceanogr. 1990;20:150–155. [Google Scholar]
  • 35. Gent PR. The Gent—McWilliams parameterization: 20 / 20 hindsight. Ocean Model. 2011;39:2–9. [Google Scholar]
  • 36. Volkov DL, Lee T, Fu LL. Eddy-induced meridional heat transport in the ocean. Geophys Res Lett. 2008;35(20):1–5. [Google Scholar]
  • 37. Viebahn JP, von der Heydt AS, Le Bars D, Dijkstra HA. Effects of Drake Passage on a strongly eddying global ocean. Paleoceanography. 2016;31(5):564–581. [Google Scholar]
  • 38. Smagorinsky J. General circulation experiments with the primitive equations. Mon Weather Rev. 1963;91(3):99–163. [Google Scholar]
  • 39. Weijer W, Maltrud ME, Hecht MW, Dijkstra HA, Kliphuis MA. Response of the Atlantic Ocean circulation to Greenland Ice Sheet melting in a strongly-eddying ocean model. Geophys Res Lett. 2012;39(9):1–6. [Google Scholar]
  • 40. den Toom M, Dijkstra HA, Weijer W, Hecht MW, Maltrud ME, van Sebille E. Response of a Strongly Eddying Global Ocean to North Atlantic Freshwater Perturbations. J Phys Oceanogr. 2014;44(2):464–481. [Google Scholar]
  • 41. McClean J., Jayne S., Maltrud M., and Ivanova D. The Fidelity of Ocean Models With Explicit Eddies In Hecht M.W. and Hasumi H., editors, Ocean Model. an Eddying regime, chapter 2, pages 149–164. American Geophysical Union, Washington, DC, 2008. [Google Scholar]
  • 42. Regier Lloyd and Stommel Henry. Float trajectories in simple kinematic flows. Proc. Natl. Acad. Sci., 76(10):4760–4764, 1979. 10.1073/pnas.76.10.4760 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43. Monroy P, Hernández-García E, Rossi V, López C. Modeling the dynamical sinking of biogenic particles in oceanic flow. Nonlinear Process Geophys. 2017;24(2):293–305. [Google Scholar]
  • 44. Delandmeter P, van Sebille E. The Parcels v2.0 Lagrangian framework: new field interpolation schemes. Geosci Model Dev. 2019;12:3571–3584. [Google Scholar]
  • 45. Anderson DM, Lively JJ, Reardon EM, Price Ca. Sinking characteristics of dinoflagellate cysts. Limnol Oceanogr. 1985;30(5):1000–1009. [Google Scholar]
  • 46.Nowald N, Fischer G, Iversen MH, Wefer G. In-situ sinking speed measurements of marine snow aggregates acquired with a settling chamber mounted to the Cherokee ROV. IEEE Xplore. 2009;(June).
  • 47. Jochum M, Danabasoglu G, Holland M, Kwon YO, Large WG. Ocean viscosity and climate. J Geophys Res. 2008;113:1–24. [Google Scholar]
  • 48. Ma J, Wang F, Tang X. Comparison of Several Subgrid-Scale Models for Large-Eddy Simulation of Turbulent Flows in Water Turbine In: Xu J, Wu Y, Zhang Y, Zhang J, editors. Fluid Machinery and Fluid Mechanics. Berlin, Heidelberg: Springer Berlin Heidelberg; 2009. p. 328–334. [Google Scholar]
  • 49. Gill AE. Instabilities, fronts and the general circulation In: Atmosphere-ocean dynamics, San Diego: Acadamic press; 1983. [Google Scholar]
  • 50.Flamary R, Courty N. POT Python Optimal Transport library; 2017. Available from: https://github.com/rflamary/POT.
  • 51. Gebbie Geoffrey and Huybers Peter. How is the ocean filled? Geophys. Res. Lett., 38(February):1–5, 2011. [Google Scholar]
  • 52. Porta Mana Piergianluca and Zanna Laure. Toward a stochastic parameterization of ocean mesoscale eddies. Ocean Model., 79:1–20, 2014. [Google Scholar]
  • 53. Visser AW. Using random walk models to simulate the vertical distribution of particles in a turbulent water column. Mar Ecol Prog Ser. 1997;158:275–281. [Google Scholar]
  • 54. Hunter JR, Craig PD, Phillips HE. On the Use of Random Walk Models with Spatially Variable Diffusivity. J Comput Phys. 1993;106:366–376. [Google Scholar]
  • 55. Ross ON, Sharples J. Recipe for 1-D Lagrangian particle tracking models in space-varying diffusivity. Limnol Oceanogr Methods. 2004; p. 289–302. [Google Scholar]
  • 56. Smith R, Jones P, Briegleb F, Bryan F, G D, Dennis J, et al. The Parallel Ocean Program (POP) Reference Manual Ocean Component of the Community Climate System Model (CCSM) and Community Earth System Model (CESM). LAUR-01853. 2010;141. [Google Scholar]
  • 57. Fox-Kemper B, Adcroft A, Böning CW, Chassignet EP, Gerdes R, Greatbatch RJ, et al. Challenges and Prospects in Ocean Circulation Models. Front Mar Sci. 2019;6(February):1–29. [Google Scholar]
  • 58. Huber M, Brinkhuis H, Stickley CE, Do K. Eocene circulation of the Southern Ocean: Was Antarctica kept warm by subtropical waters? Paleoceanography. 2004;19:1–12. [Google Scholar]
  • 59. Bijl PK, Pross J, Warnaar J, Stickley CE, Huber M, Guerstein R, et al. Environmental forcings of Paleogene Southern Ocean dinoflagellate biogeography. Paleoceanography. 2011;26(1):1–12. [Google Scholar]
  • 60. Huntley Helga S, Lipphardt B.L. Jr., and Kirwan A.D. jr. Lagrangian predictability assessed in the East China Sea. Ocean Model., 36(1-2):163–178, 2011. [Google Scholar]
  • 61. Putman Nathan and He Ruoying. Tracking the long-distance dispersal of marine organisms: Sensitivity to ocean model resolution. J. R. Soc. Interface, 10(February 2016), 2013. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62. Stewart K D, Hogg A Mcc, Griffies S M, Heerdegen A P, Ward M L, Spence P, et al. Vertical resolution of baroclinic modes in global ocean models. Ocean Model., 113:50–65, 2017. [Google Scholar]
  • 63. Annalisa Bracco, Jun Choi, Jaison Kurian, and Ping Chang. Vertical and horizontal resolution dependency in the model representation of tracer dispersion along the continental slope in the northern Gulf of. Ocean Model., 122(December 2017):13–25, 2018. [Google Scholar]
  • 64. Philip W. Boyd, Claustre Herve, Marina Levy, David A Siegel, and Thomas Weber. Multi-faceted particle pumps drive carbon sequestration in the ocean. Nature, 568:327–335, 2019. [DOI] [PubMed] [Google Scholar]
  • 65. Takaya Uchida, Dhruv Balwada, Ryan Abernathey, Galen McKlinley, Shafer Smith, and Marina Levy. The Contribution of Submesoscale over Mesoscale Eddy Iron Transport in the Open Southern Ocean. J. Adv. Model. earth Syst., 11:3934–3958, 2019. [Google Scholar]
  • 66. Isabella Rosso, Andrew Mcc, Richard Matear, and Peter G Strutton. Deep-Sea Research I Quantifying the influence of sub-mesoscale dynamics on the supply of iron to Southern Ocean phytoplankton blooms. Deep. Res. Part I, 115:199–209, 2016. [Google Scholar]
  • 67. Vic Clément, Naveira Garabato Alberto C, Green J A Mattias, Waterhouse Amy F, Zhao Zhongxiang, Melet Angélique, et al. Deep-ocean mixing driven by small-scale internal tides. Nat. Commun., 10 (2099), 2019. 10.1038/s41467-019-10149-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 68. Elda Miramontes, Pierre Garreau, Matthieu Caillaud, Gwenael Jouet, Romain Pellen, Hernández-molina F Javier, et al. Contourite distribution and bottom currents in the NW Mediterranean Sea: Coupling seafloor geomorphology and hydrodynamic modelling. Geomorphology, 333:43–60, 2019. [Google Scholar]

Decision Letter 0

Vanesa Magar

27 Apr 2020

PONE-D-20-08829

Resolution-dependent variations of sinking Lagrangian particles in general circulation models

PLOS ONE

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Reviewer #1: This paper is a numerical discussion of particle motion in ocean general circulation models, principally as a function of spatial resolution. The conclusions are unsurprising: eddy resolution makes a big difference to long-term particle displacements. My inference is that the paper is directed *not* at numerical modelers, but at paleoclimate people who over-interpret results of crude circulation models. If this inference is correct, it should be made explicit in the abstract, introduction, and probably the title and raises the question of whether it belongs in a paleo-journal.

If the intended audience is not the technically adept numerical modelling community, it is essential to tell the reader that the paper represents errors in Lagrangian displacements in *Eulerian* models. Non-expert readers should be told that although not common, Lagrangian circulation models exist, as do whole books on the subject (e.g., Bennett's). An interesting, technical, question would be how well a Lagrangian GCM can calculate the Eulerian mean flows.)

Why is a backwards in time calculation done? Does some stability issue not arise?

Again, for non-specialist audiences, it would be helpful to point out that skill in calculating the distribution of scalar tracers, such as temperature might be much more accurate in the parameterized Eulerian models---given how the parameterizations are constructed.

Reviewer #2: The manuscript describes how statistics of Lagrangian sinking particles differ when advected off-line in an eddy permitting or coarse resolution ocean model. While realizing the need for the work presented for some communities (paleo?), from a physical oceanography point of view, the content is not novel and mostly qualitative. It is well known that ocean models that are not eddy resolving underestimate horizontal dispersion. The literature on the subject is very large and some references should indeed be added. I note also that the manuscript in its current form reads like a physical oceanography work, and the appeal to the broader and more biologically oriented community of PLOS One is unclear to me.

I do not have major comments on what is in the manuscript (there is nothing wrong per se), but I would have hoped for a more in-depth justification of the work and its limitations considering the lack of novelty, or a more in-depth investigation of the reliability of the high and low resolution results. The outcome of this work confirms deductions that have been made already in the absence of sinking, and many Lagrangian studies have been performed in this regard comparing runs at the exact resolutions used here (to mention few relevant to the content of this manuscript: Putman and He, 2013; Doos, Rupolo and Brodeau, 2011, and many intercomparison papers focused on the Eulerian fields).

In detail:

Firstly, the manuscript never mentions the resolution limitations of the simulation used. 10km is not enough to resolve eddies at high latitudes, therefore the run is eddy permitting. No mention is made of the scales that are not resolved (effectively 30 km and below) in the high resolution case. Nothing is said about the vertical resolution (work by Stewart et al, 2017 and Bracco et al., 2018, both in Ocean Modelling may be of interest). In other words, can we expect to see similar results if we had a 1km resolution ocean model or 100 vertical layers? Accounting for work by, for example, Patrice Klein and others, the likely answer is no. Global runs at 2km have been made and are potentially freely available for analysis (MIT model, OFES…).

Secondly, what would happen is a reanalysis data-set was used instead? The most recent ones are run at 25km->10km near the poles and fields are saved monthly or more frequently. Do the statistics in the 10km run compare well with those from a reanalysis product, where at least surface eddies are constrained by satellite observations and the water column dynamics assimilate the large ARGO dataset? The investigation of the time-dependence of the results (advecting particles using fields saved every month or every 5 days is also superficial and should be expanded).

Thirdly, I understand the argument for justifying the simulation done for small plastic particles, but as far as I know organic particles small enough to have a sinking velocity of 6-20 m/day near the surface do not make it to the ocean bottom as such (vice versa particles that may reach the bottom with these sinking velocities were likely much larger and heavier at formation). Aggregation, grazing and bacterial activities are dominant processes on those sizes. The review by Boyd et al. in Nature in 2019 has a nice image summarizing the fate of sinking particles as function of their size, and shows that sinking is not the dominant process determining the fate of particles as small as those used in the manuscript (they do not reach more than 400-600 m depth in particle form). It is unclear, therefore, what is the paleo relevance that justifies the need for coarse resolution ocean models.

Overall, in my opinion this is an exercise that deserves publication if better motivated, with a more in-depth discussion of implications and limitations, and the exploration of a greater range of sinking velocities, saving times, etc.

Reviewer #3: This manuscript considers the problem of identifying the source location of sinking particles found at the bottom of the ocean and examines the effect of coarse spatial (and to some extent temporal) resolution. The authors find that ocean general circulation models (OGCMs) at a resolution typical of state-of-the-art paleoclimate applications (1 degree) do not capture the distributions of potential source locations well. This can be remedied to some degree by using a Smagorinski parameterisation for the eddy effects that are not directly modeled.

I find the experiment reasonably designed and the manuscript overall well written, although the organization is a bit odd. Some of the discussion could also benefit from a broader perspective, considering alternative explanations, and some of the conclusions are stated too strongly. Therefore, I recommend this submission for publication subject to minor revisions, which should address the detailed comments provided in the attachment.

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Reviewer #2: No

Reviewer #3: No

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Attachment

Submitted filename: Review.pdf

PLoS One. 2020 Sep 10;15(9):e0238650. doi: 10.1371/journal.pone.0238650.r002

Author response to Decision Letter 0


11 Jun 2020

Please see the submitted file 'Response_to_reviewers.pdf' to find our response to the editor and the reviewers, and the changes in the manuscript.

Attachment

Submitted filename: Reponse_to_reviewers.pdf

Decision Letter 1

Vanesa Magar

4 Jul 2020

PONE-D-20-08829R1

Resolution dependency of sinking Lagrangian particles in ocean general circulation models

PLOS ONE

Dear Dr. Nooteboom,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, and based on the comments by the two reviewers, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised by the reviewers during the review process.

Please submit your revised manuscript by Aug 18 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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We look forward to receiving your revised manuscript.

Kind regards,

Vanesa Magar, Ph.D.

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: (No Response)

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This revised ms. is much improved in making clear what is the goal, and how it has been addressed. The paper is now clearly addressed to what are expected to be naive paleoceanographers who take model results much too seriously. As such, I would expect the authors to have sent this paper to some place like Quaternary Science Reviews, but that is their business (and that of the Editor of PLOS ONE).

Assuming everyone agrees that the journal is appropriate, the paper can be accepted in principle, but there exist a number of amplifications that would be very useful if the readership really is thought to be uninformed about numerical ocean models.

Readers need to be told that physical oceanographers distinguish between "eddy-permitting" models and "eddy-resolving" ones. This distinction would be crucial to anyone taking the paper seriously,  but it is not even mentioned. Are internal tides, internal waves, sub-mesoscales, of no concern?

The Wasserstein distance is fundamental to their results, but the paper has no explanation except for a reference number. Explain. 

Even in simple laminar flows, particle trajectories are known to be chaotic (e.g., Regier and Stommel, 1979 PNAS). Why is that not an issue here? 

It is likely true that the vertical velocity in the ambient fluid is negligible compared to the sinking velocities.  But in upwelling zones? (See e.g., Liang JGR 2018) Again, useful information for non-modelers. 

The complexity now known about near-bottom flows in the presence of topography needs to be at least mentioned. A large recent literature on this subject and probably very important in the particles landing in sedimentary regions.

The authors keep referring to the "mean" flow. Is there a definable mean flow? Over what time-scale? Same everywhere?

The bolus velocity is mentioned on P. 14. If it was ever defined, I missed it.

Can something be said about the skill of the reference model in reproducing the modern circulation elements, such as the eddy intensities, spatial scales, etc.?  

Consider comparing Fig. 3 to the "ventilation" Fig. 2 of Gebbie and Huybers (GRL 2011). Just needs one sentence.

Is "rectification" (P. 7) the right word? Comes from radio engineering and implies self-interaction producing a mean or low frequency.

Put  horizontal dimensions scales on Fig. 1.

Reviewer #3: The authors have done a good job addressing my previous concerns. I now recommend the manuscript for publication.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Reviewer #1: No

Reviewer #3: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Decision Letter 2

Vanesa Magar

21 Aug 2020

Resolution dependency of sinking Lagrangian particles in ocean general circulation models

PONE-D-20-08829R2

Dear Dr. Nooteboom,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Vanesa Magar, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: I thought the previous comments were sufficiently minor that I didn't have to see this 3rd version Nonetheless,I have read it again. The authors do seem to have met the most important criticisms and the paper should beaccepted.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Acceptance letter

Vanesa Magar

25 Aug 2020

PONE-D-20-08829R2

Resolution dependency of sinking Lagrangian particles in ocean general circulation models

Dear Dr. Nooteboom:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Vanesa Magar

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Fig. Comparison between the reference configuration R0.1 (red) and the temporally averaged configuration R0.1m (blue) at two release locations (wf = 6 m day−1).

    (a) 45.5°S, 39.5°E at 2068m depth (red on top of blue) (b) 46.5°S, 42.5°E at 2238m depth (blue on top of red).

    (TIF)

    S2 Fig. Geographic plot of the time mean eddy kinetic energy at the surface.

    The eddy kinetic energy is defined as 12u·u¯, where the bar denotes the time mean and u′ the deviation from the time mean velocity vector u (so u(x,t)=u¯(x)+u(x,t)).

    (TIF)

    S1 Video. Animation (back in time) of particle back-tracking analysis (wf = 6 m day−1) with particle release at the Uruguayan margin (47.9°E and 37.15°S, ∼4800m depth).

    (a) the configuration R0.1 with 5-daily model ouput and (b) the configuration R0.1m with monthly model output.

    (MOV)

    Attachment

    Submitted filename: Review.pdf

    Attachment

    Submitted filename: Reponse_to_reviewers.pdf

    Attachment

    Submitted filename: reviewer_response.pdf

    Data Availability Statement

    All the code that can be used to reproduce the figures/results in the manuscript can be found on github: https://github.com/pdnooteboom/PO_res_error. The results of this paper can also be accessed on planktondrift.science.uu.nl.


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