Skip to main content
PLOS One logoLink to PLOS One
. 2020 Sep 29;15(9):e0239447. doi: 10.1371/journal.pone.0239447

Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma

Ondřej Lisický 1,*,#, Aneta Malá 2, Zdeněk Bednařík 3, Tomáš Novotný 4, Jiří Burša 1,#
Editor: Fang-Bao Tian5
PMCID: PMC7523976  PMID: 32991605

Abstract

The paper deals with the impact of chosen geometric and material factors on maximal stresses in carotid atherosclerotic plaque calculated using patient-specific finite element models. These stresses are believed to be decisive for the plaque vulnerability but all applied models suffer from inaccuracy of input data, especially when obtained in vivo only. One hundred computational models based on ex vivo MRI are used to investigate the impact of wall thickness, MRI slice thickness, lipid core and fibrous tissue stiffness, and media anisotropy on the calculated peak plaque and peak cap stresses. The investigated factors are taken as continuous in the range based on published experimental results, only the impact of anisotropy is evaluated by comparison with a corresponding isotropic model. Design of Experiment concept is applied to assess the statistical significance of these investigated factors representing uncertainties in the input data of the model. The results show that consideration of realistic properties of arterial wall in the model is decisive for the stress evaluation; assignment of properties of fibrous tissue even to media and adventitia layers as done in some studies may induce up to eightfold overestimation of peak stress. The impact of MRI slice thickness may play a key role when local thin fibrous cap is present. Anisotropy of media layer is insignificant, and the stiffness of fibrous tissue and lipid core may become significant in some combinations.

Introduction

Atherosclerosis is a cardiovascular disease causing local intimal thickening of artery wall and plaque formation. Vulnerable atherosclerotic plaques, characterized by lipid accumulation under a thin fibrous cap (FC), have attracted attention of researchers for more than two decades [1, 2]. A rupture of the plaque may cause blood clot formation and leads to the stroke in case of carotid arteries [3]. The rupture occurs when stresses induced by mechanical loading exceed the tissue strength. Thus, the peak cap stress (PCS) within the FC is believed to be the most valuable indicator of the plaque vulnerability [47].

Recent progress in imaging techniques and in computational modelling enables us to use patient-specific (PS) geometries for assessment of stresses. Finite element (FE) analysis [6, 8] or fluid-structure interaction (FSI) [912] are mostly used to analyse the impact of key factors like geometrical parameters or mechanical characteristics of the plaque and arterial wall on the stresses.

Like any diseased arterial wall, the thickened intima layer called fibrous tissue (FT) is very heterogeneous. Hence its mechanical properties vary locally within a plaque as well as among different plaques [7, 13, 14]. Therefore, analyses of plaque composition and experimental investigation of mechanical properties of its components are needed. In particular, little information is known about mechanical behaviour of lipid core (LC). Frequently its very soft behaviour is assumed in computational modelling [4, 6, 15], except for a study applying the other extreme of very high stiffness [16]. In contrast, mechanical behaviour of the vessel wall layers appears to be well supported by experiments. Uniaxial and biaxial mechanical tests of separated wall layers [8, 17, 18] enable us to describe its anisotropic behaviour even accounting for the wall structure.

Simplified 2D models used earlier in FE analyses were found to overestimate the stresses [6, 10, 19], therefore the research should focus on 3D models [20]. However, the level of these models varies. Simpler models with idealized geometry use to consider either homogeneous or layered arterial wall [4, 21], although the omission of the wall is also presented frequently [7, 10, 12]. Nowadays PS models are preferred but they suffer from lack of geometrical data and large dispersion of mechanical properties. While 2D histology sections or ex vivo MRI scans of autopsy samples enable us to reconstruct completely both the lumen and the vessel wall [4, 6, 8], the MRI images taken either in vivo [9, 12] or with samples from endarterectomy (where the plaque is resected without media and adventitia) do not enable us to capture wall boundaries. Consequently, the 3D models based on in vivo imaging give often contradictory results depending, for instance, on consideration of real mechanical properties of outer wall layers or FT stiffness [4, 7] or quality of the geometrical data [6, 22].

In this study, 3D PS FE models of carotid atherosclerotic artery for two patients accounting for both media and adventitia layers are used to investigate the significance of several factors in the calculation of extreme stresses in the atheroma; this should indicate their significance in further vulnerability diagnosis and enable us to propose a reasonable level of computational models. In total, five different factors related to mechanical properties or geometry of the atheroma are investigated; application of the design of experiment (DoE) concept, especially central composite design (CCD), resulted in one hundred solved computational models.

Methods

Acquiring data on geometry and structure

Ethics statement

This study was approved by the medical ethical committee of St. Anne’s University Hospital in Brno (reference number 12V/2017). Written informed consent was obtained from the subject.

Magnetic resonance imaging (MRI)

Atherosclerotic plaques were harvested (sample 1: man, 61 years, sample 2: man 71 years) during endarterectomy in St. Anne’s University Hospital in Brno which met the following requirements: (1) the presence of at least one large LC with calcifications within, (2) undamaged and entire external surface of the FT and (3) an overall length which could be covered with a sufficient number of images using standard in vivo axial resolution. The samples were classified as an atherosclerotic lesion of Type VII [23]. Post-operative imaging of the samples was performed with a 9.4 T MRI system (Bruker BioSpec 94/30 USR, Ettlingen, Germany). The images were acquired in two series: the first one with the RARE technique (repetition time TR = 2500 ms, effective echo time TEeff = 10.77 ms), the second one with IR-RARE (TR = 3000 ms, TEeff = 6.66 ms, inversion time TI = 950 ms). The slice thickness (ST) was set to 1.5 mm, 1 mm and 0.25 mm for the purpose of comparison. An in-plane resolution of 78 μm was constant for all measurements with the matrix size of 256x256 (see Fig 1).

Fig 1. Example of carotid plaque bifurcation.

Fig 1

From the histology cross-section (A) and the high-resolution MRI 9.4 T with ST = 0.25 mm (B).

Histology

After MRI the samples were fixed in 10% neutral formalin for 24 hours and then subjected to decalcification, dehydrated and embedded in paraffin. Subsequently, 3–5 μm thick tissue slices were cut off and stained with hematoxylin-eosin. Then the slices were scanned and compared with the individual MRI images to distinguish the tissue components properly (see Fig 1). However, they could not be directly used for model segmentation due to their unavoidable deformation after the histological processing [22].

3D PS model of carotid artery with atheroma

Semi-automatic segmentation of the recorded MR images was applied using RETOMO (BETA CAE Systems) to distinguish the plaque components. We focused on segmentation of the FT and LC (including the regions of calcification). As biological structures are characterized by smooth surfaces [8], the geometry was smoothed [24] with the same parameters for all the models. Since the individual vessel wall layers cannot be distinguished in the in vivo MRI scans and the sample harvested at endarterectomy cannot include the media and adventitia layers of the wall, the outer surface of the obtained geometry was used to create the volume of the missing layers. For this purpose, the outer surface of the specimen was offset equidistantly by 0.5 mm [11, 21] to create the outer surface of the artery wall. Although it is known the media may be degraded and non-uniformly thick under the plaque, the assumption of constant wall thickness (WT) was adopted here as an appropriate simplification and the thickness was included into DoE as one of the investigated parameters. The reconstructed model is depicted in Fig 2.

Fig 2. Illustration of the 3D PS model of the atherosclerotic carotid plaque (sample 1) obtained from endarterectomy.

Fig 2

Carotid wall (red) shares the surface with FT.

Material models

Media was modelled as a fibre-reinforced anisotropic layer, composed of a non-collagenous matrix and two families of collagen fibres. Based on mean material response [25], its anisotropic behaviour was characterized by the following strain-energy density function (SEDF) according to [26]:

Ψ=Ψiso+Ψaniso=μ2+k12k2(ek2(1ρ)(I13)2+ρ(I41)21) (1)

where μ>0 is a stress-like parameter describing the isotropic response of the tissue, k1>0 is a stress-like parameter related to the collagen fibre stiffness, the dimensionless parameter k2>0 refers to the level of fibre strain stiffening,I1=λr2+λθ2+λz2 and I4=λθ2cos2φ+λz2sin2φ are invariants of the right Cauchy-Green deformation tensor C (I4 related to stretches of two fibre families), and ρ<0;1> is a concentration parameter representing a "degree of anisotropy". In the applied model, + or -φ denotes the angle between the circumferential direction and direction of each fibre family located symmetrically in the tangential plane of the tube. As the applied FE software Ansys does not offer this material option, the model was implemented via a user material subroutine.

The other wall layers and plaque components were modelled as incompressible, hyperelastic and isotropic since their anisotropy is low [17] compared to the inter-patient variability; this simplification is generally accepted [27]. To fit the biaxial response of the adventitia (and also of the media when modelled as isotropic for comparison), 3rd order Yeoh type SEDF [28] was used in the following form:

Ψ=i=03ci0(I13)i (2)

where ci0 are material parameters. Material responses of both layers were taken from experimental biaxial testing of each carotid component [17]. Material parameters for the wall layers were identified with considering residual stresses and stretches observed in the load-free geometry [25]. Uniaxial test data of FT [7, 13, 14] were fitted with the 2nd order Yeoh SEDF while the LC was modelled with Neo-Hookean (i.e. 1st order Yeoh) constitutive model. Material responses can be seen in Fig 3 with the used material parameters presented in Table 1.

Fig 3. Stress-stretch equi-biaxial responses of the chosen constitutive models.

Fig 3

The dotted lines show the isotropic fit of the circumferential (solid) and axial (dash dotted) anisotropic responses. The soft (dashed) and the hard (solid) isotropic responses for the FT and LC are also presented for comparison.

Table 1. Material parameters.

Tissue Type Material constants a
Media A μ = 122.3 k1 = 24.7 k2 = 16.5 [-] φ = 6.9 [°] ρ = 0.8 [-]
I c10 = 122.3 c20 = 0 c30 = 337.7
Adventitia I c10 = 88.7 c20 = 0 c30 = 45301.4
Lipid core I soft c10 = 0.1
I hard c10 = 50
Fibrous tissue I soft c10 = 2.7 c20 = 20
I hard c10 = 342.1 c20 = 20

aThe above values are in kPa if not otherwise specified. Symbols I and A denote the isotropic and anisotropic behaviour, respectively.

FE model setup and boundary conditions

FE analysis was performed in FE software ANSYS 19.2. (Ansys Inc., PA, USA). The vessel wall was meshed with four/eight elements across the WT using linear 8 node hexahedral elements (SOLID185) in ICEM 19.2. (Ansys Inc. PA, USA) see Fig 5. A linear tetrahedral element (SOLID285) mesh performed in ANSA (Beta CAE) was used for the FT and LC. A bonded contact was used to join the FT with the vessel wall, while the other components were connected by shared nodes. A constant pressure value of 13 kPa (mean arterial pressure) was applied on the luminal surface of the geometry. Free ends of the vessel wall were fully constrained. A mesh convergence analysis was performed to obtain a suitable element size for all models. A typical mesh density resulted in 24k elements for the vessel wall and 95 k for FT with LC.

Fig 5. Cross-sections representing the model configurations.

Fig 5

Different WT of 0.5 mm (A), 0.25 mm (B) and 0 mm (C). The adventitia (dark blue) is always represented with 2 elements, as well as the media (light green). FT (light blue) increases its volume with decreasing WT. LC representation (pink) is immutable in the same axial position and with the same ST. Details of the wall are presented in the white lumen area.

Material orientation

Consideration of media layer anisotropy drew the problem of the orientation of principal material axes in each point of the model. Each element coordinate system needs to be rotated to the preferred orientation of the collagen fibres. In this study, we take advantage of the applied locally structured hexahedral mesh which enables us to define a centroid of each section and subsequently also the central line (see Fig 4). Two points of this line close to the section were used to define the local axial basis ez. A vector normal to the inner surface of the element located in its centroid was used as the local radial basis er. After that, a cross product of those two bases resulted in the circumferential basis eθ. The resulting distribution of bases determinates the principal material directions when the anisotropic constitutive model is applied.

Fig 4. Computational model with principal material directions.

Fig 4

(A) The discretized model of the vessel wall of sample 1 with hexahedral elements; the central line (white dashed) serves for definition of the axial base ez. (B) Detailed illustration of the coordinate system of an individual element. (C) Detail of element-specific material directions within the vessel wall model; the blue, green and red arrows indicate the circumferential, axial and radial directions, respectively.

The investigated factors and their statistical analysis

In biomechanics, all the input data for computational modelling suffer from large uncertainties or inaccuracies. This variance of input data may influence the character of the deformation and consequently, the stresses evaluated as a potential indicator of plaque vulnerability. Similarly to another biomechanical study [29], DoE with 95% confidence level was applied for this statistical analysis; specifically the CCD was chosen, to analyse (using Minitab 15 statistical software) the possible non-linear dependence of PCS on some of the five selected factors. This resulted in overall 100 computational models for the two patients, differing in their material and geometrical factors; these models afforded the input data for statistical analysis.

In the DoE methodology, a 2-factorial design was performed and thereafter augmented with a set of axial points resulting in the CCD, specifically the face-centred design. Here, the middle level of each factor is used (centre of a factorial face) enabling to estimate a possible curvature of the response. The model suitability was checked for all the fitted responses via normal distribution of residuals and a sufficient coefficient of determination (R2>0.8). The first (maximal) principal stresses were adopted as stress response indicators, especially PPS and PCS [4, 6]; for all the 3D models analysed, they were evaluated in cross-sections with a 0.2 mm span. Lastly, the analysis of variance was performed within the DoE to find the significance of the individual factors and of their combinations. Except for media behaviour (MB), all the factors were set as continuous. A specific choice of factors can be found below with their range of values summarized in Table 2.

Table 2. DoE factors.

Selected factors for DoE with their chosen upper and lower limits.

Factor Minimum Maximum
Wall thickness [mm] 0 0.5
Slice thickness [mm] 0.25 1.5
Lipid core μ [kPa] 0.1 50
Fibrous tissue c10 [kPa] 2.7 342.1
Media behaviour isotropic anisotropic

Lipid core stiffness

The LC plays a key role in the plaque vulnerability through its size or location in the plaque where the resulting distance from the lumen to the LC is characterized as FC thickness [7, 21]. However, the LC composition almost disables its mechanical testing. Thus, the stiffness of the LC was chosen as a variable factor ranging from 0.1 to 50 kPa. The lower value (related to lipids) is mostly used in computational models while the upper value was chosen to reflect the hypothesis that micro-calcifications occurring in the extracellular matrix of the LC may cause its stiffening by orders.

Fibrous tissue stiffness

Experimental data of carotid plaques [7, 13, 14] were analysed to find samples with extreme stiffness which were then fitted with the second-order Yeoh SEDF (see Fig 3). Nearly linear stress-strain response, i.e. a very low strain stiffening, was found for both the most and the least stiff plaques, thus the number of variables could be reduced. The second material parameter c20 (related to strain stiffening) was fixed and only the first constant c10 (initial stiffness) was fitted giving a sufficient quality of the fit (R2>0.8).

Media behaviour

The biaxial response of carotid media [25] was used to fit both anisotropic and isotropic constitutive models (see Fig 3). The anisotropic description was applied with the locally varying orientation of the element coordinate system.

Slice thickness

In vivo and ex vivo imaging methods differ substantially in their resolution (both axial and in-plane). Histological slices are often used for reconstruction of 2D and 3D PS plaque geometries [4, 6] since they provide a suitable in-plane resolution. However, it is very laborious to achieve a sufficient axial resolution and the deformation caused by slice preparation [20, 22] may result in distortion of the shape. Therefore, ex vivo MRI was used for the 3D reconstruction in this study. As only in vivo imaging has potential in clinical assessment of plaque vulnerability, the impact of different resolutions of the MR images was chosen as another investigated factor, since the lower axial resolution of the in vivo MRI may cause loss of geometrical information significant for the computational analysis [6]. This factor was set as continuous with values ranging from 0.25 (resolution of the applied ex vivo MRI) to 1.5 mm (a typical resolution of in vivo MRI).

Vessel wall thickness

The vessel WT was set from 0 to 0.5 mm [11, 21] where the lower limit represents models with identical mechanical properties for the wall and the FT [7, 12, 19], neglecting thus the impact of different properties of the outer arterial layers. This means the volume of the wall was always included in the model but with different material properties. In all the models the thickness of the wall was halved between media and adventitia. Fig 5 shows the used configurations where the vessel wall is represented with 4 elements per thickness even when the half thickness t = 0.25 mm (axial point) is considered (see Fig 5).

Since the CCD requires only continuous variables, the discrete MA factor was fixed and the DoE was performed twice with four continuous factors. The DoE results were compared using a paired t-test to investigate the significance of the MB factor.

Results

The factors significant for the statistical model are summarized in the Table 3.

Table 3. Analysis of variance for the PPS and PCS.

Sample 1 Peak Plaque Stress
Linear Square 2-Way interaction Model R2
Factor WT FT WT*WT WT*FT 0.894
p-value <0.001 0.48 0.08 <0.001
Peak Cap Stress
Linear Square 2-Way interaction Model R2
Factor WT LC FT LC*LC WT*LC WT*FT LC*FT 0.845
p-value <0.001 0.01 0.117 0.124 0.072 <0.001 0.038
Sample 2 Peak Plaque Stress
Linear 2-Way interaction Model R2
Factor ST WT LC FT WT*FT LC*FT 0.874
p-value 0.025 0.001 0.113 0.115 <0.001 0.146
Peak Cap Stress
Linear Square 2-Way interaction Model R2
Factor ST WT LC FT LC*LC WT*LC WT*FT 0.823
p-value 0.026 <0.001 <0.001 0.015 0.018 0.122 <0.001

The table shows the statistical significance of factors included in the statistical model represented by their p-values and R2. The statistically significant or nearly significant factors and their combinations are highlighted in bold.

An example of the numerical results of the PS model of the atherosclerotic carotid artery is presented in the form of displacements and first principal stresses for sample 1 in Fig 6. Cross-sections in the selected locations show typical stress distributions focused on the PPS and PCS. Results near the boundary conditions and the bifurcation were not considered since they may cause non-realistic artefacts (stress concentrations due to boundary conditions). The discrete media-related factor MB was found to be insignificant (probability value p = 0.99) with stresses showing a mean difference of 1 kPa between the models with isotropic and anisotropic media for both patients. Therefore, this factor was not included in the evaluations below.

Fig 6. Contour maps of two sample 1 models.

Fig 6

Both LC and FT being soft, differing in WT only: WT = 0 mm (A), (C) and WT = 0.5 mm (B), (D). Displacements in (A) and (B) show their 64% overestimation in model (A) with media and adventitia properties replaced by those of the FT. The maps of first principal stresses (C) and (D) show their distribution in the chosen locations (dashed lines) with the arrows indicating maximal PPS and PCS in the respective sections (white dashed lines). In the model with media and adventitia replaced by the FT, the maximal stresses are almost six times higher. Note that (D) is shown without the media and adventitia layers due to very different levels of stresses between the plaque and these layers.

Peak plaque stress

The statistical model fitted to the PPS response showed the same significance of the WT for both samples. Unlike in sample 1, ST was found significant in sample 2. Also, the interaction between FT stiffness and WT (FT*WT) was found significant in both cases. The squared effect, evaluated by the additional face-centred axial points, was significant for sample 1 in case of WT factor. The maximum was mostly localized in the narrow part of the FT component between the luminal surface and the inner surface of the vessel wall, except for the cases with lower stress concentration where the maximum was located within the FC (see detail D in Fig 6). The cube plot in Fig 7 shows the PPS responses at low and high levels of each factor. In the model with soft FT, the PPS increased on average up to five times (from 29 to 160 kPa for sample 1 and 44 to 230 kPa for sample 2) when the wall was not included. In contrast, an opposite tendency occurred when the hard FT was considered; the PPS decreased by some 30% when the wall was not included.

Fig 7. Cube plots of PPS values [kPa].

Fig 7

Patient 1 (A-B) and patient 2 (C-D). Colours represent a specific factor; red—WT, green—ST, blue—LC stiffness. Cubes A and C represent low stiffness FT while B and D high stiffness FT.

The highest stress concentrations (168 kPa and 313 kPa) were found in the models without the vessel wall and with the soft atheroma components, while the lowest stresses (22 kPa and 26 kPa) were found in the models with the artery wall included and with the soft FT and hard LC. The results show that similarly to the MB factor, neither LC stiffness nor FT stiffness itself has a significant impact on the PPS minimum/maximum as long as interactions are not considered. For all the responses with the artery wall included, however, Fig 7 shows 3 up to 5 times higher PPS values for the hard FT compared to the models with the soft FT, except for some lower ratios occurring when half WT is considered.

Peak cap stress

Maximum PCS was localized in the shoulder region of the FC in the majority of cases (see Fig 6). In contrast to PPS, the impact of the FT stiffness was found significant for sample 2, while that of the LC stiffness plays also a significant role in some cases. Also here, however, the main effect is caused by the WT and by the interaction of WT with the FT. ST and squared effect of LC factor were found significant for sample 2 although they showed only minor effect for sample 1. The PCS values at low/high levels of all the investigated factors are summarized in Fig 8. The highest PCS differences occur for the soft FT between the cases with WT = 0 and WT = 0.5, while with the hard FT the response was nearly independent of the other factors. The highest stress concentrations (153 kPa and 300 kPa) were found in the models without the vessel wall and with the soft atheroma components, while the lowest stresses (22 kPa and 25 kPa) were found in the models with the artery wall included and with the soft FT and hard LC. The maximum difference in the PCS between soft and hard components (both FT and LC) was 29 kPa vs 47 kPa and 57 kPa vs 53 kPa with the WT fully included while it amounted to 138 kPa vs 49 kPa and 300 kPa vs 50 kPa without the wall; this comparison was based on results for the minimal slice thickness only.

Fig 8. Cube plots of PPS values [kPa].

Fig 8

Patient 1 (A-B) and patient 2 (C-D). Colours represent a specific factor; red—WT, green—ST, LC stiffness—blue. Cubes A and C represent low stiffness FT while B and D high stiffness FT.

Discussion

Credibility of computational modelling in the assessment of atherosclerotic plaque vulnerability depends on a considerable number of factors the uncertainty of which influences the calculated stress distribution throughout the plaque; evidently, their impact is worth investigating when a realistic response is required. A great number of studies focused on geometrical parameters and indicated the FC dimensions as crucial parameters for the plaque vulnerability [4, 7, 11, 21]. Even though the presented models did not fully meet the vulnerable plaque definition, it is not clear whether such plaques are the only ones which should be investigated for high stresses by computational modelling in order to examine a mechanism of rupture. Recent study Libby et al. [30] evaluated the current strict focus on vulnerable plaques with the conclusion that we should be prepared to address its fundamental causes in greater depth. Burke et al. [31] defined the limit FC thickness for vulnerable plaques <65 μm which is below the resolution of in vivo or even ex vivo imaging methods (except for e.g. μCT or histology) and so applicable analysed only to idealized studies. Moreover, stresses found in some configurations within our study exceeded a tissue threshold of 300 kPa which was discussed e.g. in Holzapfel et al. [20]. This indicates that either local thresholds need to be defined or that even non-vulnerable plaques from its definition might be critical for rupture risk. In this study, we focused on consideration of material properties of the vessel wall along with those of the atheroma; we used 3D PS computational models and the DoE strategy to investigate their influence on PCS and PPS.

Wall thickness

To the authors´ best knowledge, there is no current study investigating the possible impact of the wall consideration in the computational model of the atherosclerotic plaque on the stress distribution even though the omission of the wall is very frequent in in vivo studies; therefore, different studies will be discussed. To consider the composition of the wall with atheroma in our study, the vessel wall was always included, although with different material properties. In Huang et al. [10] the authors used a PS plaque model without distinguishing between the vessel wall components. When comparable inputs are taken into consideration, the PCS maxima correlate with our findings (120 kPa vs 58 to 147 kPa represented by average values in our study depending on the FT stiffness). Yuan et al. [7] presented an idealized plaque model not distinguishing between the wall components but with various stiffness for each plaque component based on its mechanical tests. The decrease in the FT stiffness resulted in an increase of PCS and PPS which correlates with our findings using the configuration with WT = 0. Maximum PCS of 228 kPa was found for the configuration with a thick FC, cf. our average value of 183 kPa with comparable model inputs and independent of ST. Consideration of the wall was presented in Nieuwstadt et al. [6] where lower stress concentrations (mean PCS of about 60 kPa) were found compared to Yuan et al. [7]. Here our findings show the average PCS values of 54 kPa with a comparable LC stiffness but different FT stiffness, the effect of which was found insignificant. When we compare the discussed studies with our findings, neglecting the specific vessel wall properties leads to higher stress concentrations which may cause incorrect evaluation of PCS. This effect is reduced with a hard FT approaching the wall stiffness itself. Especially with softer FT models, however, it holds that consideration of vessel wall is decisive for the calculated stresses while the impact of its thickness variations is much less pronounced. Specifically, zero WT resulted in the overestimation of PPS and PCS by a factor of 5 up to 8 (for the soft FT and LC models).

Slice thickness

Study Lisický et al. [24] investigated the ST impact on magnitudes of surfaces and volumes of the atherosclerotic plaque components and found only slight impact of the ST in the whole investigated range between 0.25 to1.5 mm, with a negligible impact between 0.5 and 1 mm. In this work, we found that ST was significant for sample 2 while insignificant for sample 1. This bias might be related to the fact that, in case of sample 1 with the high ST, a minimum FC thickness was comparable with a low ST but in case of sample 2, there were huge differences between them. Here, the local minimum of the FC thickness was not captured by any of the images resulting in lower stress concentrations. In study Nieuwstadt et al. [6] the authors used different numbers of histological slices which resulted in low and high sampling models. Their results showed a large variation among different samplings though they concluded that the magnitude of PCS differed significantly when lower sampling was used. Higher ST of MRI or low sampling for other imaging methods may cause data loss if, for example, small LC or local thin FC are presented. Our results showed that the impact of ST should not be neglected and further investigation is needed. In conclusion, the in vivo MRI with its achievable axial resolution of at least 1.5 mm should be capable to distinguish critical plaque components, especially if equipped with a special carotid coil providing also a sufficient in-plane resolution as shown in studies [32, 33] although its resolution is still not capable to capture thin FC.

FT stiffness

In many experimental studies, various mechanical properties of the FT were found [7, 13, 14]. The influence of FT stiffness was examined in Akyildiz et al. [4] where the authors used an idealized parametric model with a Neo-Hookean (i.e. nearly linear) material model for the intima and an anisotropic material model for both the media and adventitia. The soft intima models showed a lower PCS than the stiff and intermediate intima models. In our study, the same finding was found with the increase by a factor of 1.6 to 2 between the soft and hard FT when approximately the same inputs with full WT were used. An opposite tendency (an increase of PCS with the softer FT) was found in the Yuan et al. [7] but this was caused by neglecting the wall components as discussed above. In our simulations with the media and adventitia replaced by the FT, the PCS also increased 2.5 to 3.6 times between the hard and the soft FT model. The explanation of this effect may be in the stiffness of the soft FT: if it is lower by orders than the stiffness of the media, adventitia or hard FT, large deformations occurring with soft FT may induce high increase of stresses. The low and high stiffness limits of the FT used in our models show a huge variance of FT; the initial stiffness of the hard FT is ca. three times higher than those of media and adventitia while this value is lower by two orders for the soft FT. Due to the complexity of the FT structure, we can expect that the variance of its stiffness may not be random but related to some other factors characterizing different experimental groups. The two or threefold increase in the extreme stresses between the low and high FT stiffness models indicates that if we were able to classify the patients (in vivo, for example based on MRI) into some basic groups, the variance within each group could be significantly reduced. The presence of calcifications or even their distribution [5, 34] might serve as such an indicator. Maldonado et al. [34], however, presented a very low (~2%) content of micro-calcifications in the FT thus we believe their impact is within the considered range of the FT stiffness.

LC stiffness

The influence of micro-calcifications in the LC was previously discussed in [5, 34] where the authors found their high influence on the stress concentrations. Their findings indicate that thousands of micro-calcifications occur at the borders of the necrotic core or inside the LC, surrounding there some larger calcifications. Besides, the high-resolution images used in those studies indicate that modelling of calcifications as one homogeneous part [12, 16, 35] of the atherosclerotic plaque may be incorrect. Using high-resolution micro CT and histology they found that micro-calcifications are non-uniformly distributed within the FC and their amount decreases from the LC to the lumen. Grouping of these calcifications may cause artefacts in MRI and subsequent misleading evaluation of the images. In Iannaccone et al. [16], the whole LC was modelled in three ways: as a lipid, a fibrotic media and as a calcification. Their findings indicate that higher stresses occur when the LC is modelled as a soft lipid and correlate thus with our findings for the PCS. However, we cannot compare the results for hard LC since the LC stiffness in our models was much lower than that used in [16] where the whole LC was a ceramic-like material.

Media behaviour

Anisotropy of the arterial wall is an undisputed fact which has been investigated in the last decades and, subsequently, numerous structure-motivated constitutive models have been formulated [26, 36, 37]. However, to take advantage of these models, information on the fibrous structure of the tissue is needed. Due to lack of information on a number of collagen fibre families and on their preferred orientation and dispersion in specific arterial tissues, these models are often fitted to mechanical experiments only which make them purely phenomenological. Also in this study, the structural parameter φ was used as a phenomenological variable [25]; there it was found to be the smallest for the media layer (<10 degrees) which indicates fibres oriented dominantly in the circumferential direction. Together with the concentration parameter ρ = 0.8, the anisotropic behaviour of the media layer can be considered as sufficiently representative even if, due to lack of information on the anisotropy of the diseased media, we used experimental results [8, 17] obtained partly with non-atherosclerotic tissue. The results obtained in this study indicate that the isotropic representation of the biaxial tests can be used for computational modelling of the media without significant impact on stresses in the plaque or in the FC. Nevertheless, these findings do not contradict the dominating opinion that local structural parameters of collagen fibre distribution in a specific artery and arterial layer are important for the calculation of stresses in this layer and should be investigated in detail [38].

Limitations

The FT material model may be considered as one of the main limitations of the presented study. However, no relevant data for the FT anisotropy is available, neither on its mechanical response nor on its structure. The FT extreme experimental responses selected for this study show only low strain stiffening which was captured by the second parameter of the used Yeoh SEDF. Concerning the anisotropic model of the media, the procedure applied to set its principal material directions is rigorous; their setting may be inaccurate only in very irregular parts of the geometry, such as the top of the bifurcation, where no data is available on local collagen structure. However, due to the confirmed insignificance of the media anisotropy, inaccuracies in principal directions are irrelevant. The constant pressure applied on the luminal surface might be also considered as a limitation but it was confirmed that there are no significant differences between structural and one or two-way FSI analyses [10]. Also the sample removed from the body may reduce its length and residual stresses in the tissue may be released. However, the axial pre-stretch decreases significantly with the age and thus it becomes less significant in the age group for which the atheroma is typical. Also the geometric complexity of the carotid bifurcation makes correct implementation of axial pre-stretch rather difficult, therefore it was not applied in our analyses. On the contrary, the residual stresses are believed to be a very important factor which influences the stress-strain distribution in arterial wall. In this study, the residual stresses were included in the material model of the vessel wall [25] while they were neglected in the FT and LC where, to our best knowledge, no data on their presence, magnitude, or distribution is available.

Although the geometry of the ex vivo sample may be changed, higher resolution of the MRI is substantial while distortions of the sample are negligible by virtue of its relatively high stiffness. The last limitation consists in the only two PS model geometries reconstructed in this study. Although our analyses achieved comparable statistical significance of all results (except for the MRI slice thickness which is strongly related to the complexity of geometry and its inter-patient variability), for other geometries only similar qualitative tendencies may be expected. However, a general quantitative prediction of impact of the individual factors would not be feasible, even if we made much more patient-specific calculations. Each patient has to be evaluated individually, therefore we intend to apply the presented methodology in future studies to strengthen the validity of our conclusions.

Conclusion

Our findings point out the necessity of consideration of the vessel wall stiffness in computational modelling of atherosclerotic arteries, especially when the fibrous tissue of the plaque is less stiff than the media and adventitia layers. It appears that in FE modelling of the stress response in the fibrous cap, specifically of the peak cap stress which is believed to be decisive for plaque vulnerability, the following parameters play a key role: (i) stiffness of the fibrous tissue, (ii) stiffness of the lipid core, (iii) real material properties of the media and adventitia layers of arterial wall, especially their strain stiffening which is much more pronounced than at the fibrous tissue. In contrast, anisotropy of the media layers, as well as the wall thickness itself (if being non-zero) are less significant for maximum stresses in the fibrous cap; this fact appears encouraging for further studies based on in vivo MRI.

Supporting information

S1 Appendix. Verification of Ansys user subroutine for media material model.

(DOCX)

S1 Fig

(TIF)

S2 Fig. Geometry model of patient 2.

Section of sample 2 model with two large lipid cores.

(TIF)

S1 File. Ethical agreement.

(PDF)

Acknowledgments

We thank to Pavel Skácel who implemented the constitutive model needed for our study into the ANSYS software.

Abbreviations

2D

two-dimensional

3D

three-dimensional

CCD

central composite design

CT

computed tomography

DoE

design of experiment

FC

fibrous cap

FE

finite element

FSI

fluid structure interaction

FT

fibrous tissue

LC

lipid core

MB

media behaviour

MRI

magnetic resonance imaging

PCS

peak cap stress

PPS

peak plaque stress

PS

patient specific

SEDF

strain-energy density function

ST

slice thickness

WT

wall thickness

Data Availability

All supporting data (models, statisticas) are available on DOI: https://doi.org/10.6084/m9.figshare.12937196.

Funding Statement

This work was supported by Czech Science Foundation (https://gacr.cz/en/) project No. 18-13663S. The MRI service was funded by project LM2015062 "National Infrastructure for Biological and Medical Imaging (Czech-BioImaging)" of the Ministry of Education, Youth and Sports of the Czech Republic (http://www.msmt.cz/?lang=2).

References

  • 1.Ross R. Inflammation or Atherogenesis. N Engl J Med. 1999;340: 115–126. [DOI] [PubMed] [Google Scholar]
  • 2.Finn A V., Nakano M, Narula J, Kolodgie FD, Virmani R. Concept of vulnerable/unstable plaque. Arterioscler Thromb Vasc Biol. 2010;30: 1282–1292. 10.1161/ATVBAHA.108.179739 [DOI] [PubMed] [Google Scholar]
  • 3.Fisher M, Paganini-Hill A, Martin A, Cosgrove M, Toole JF, Barnett HJM, et al. Carotid plaque pathology: Thrombosis, ulceration, and stroke pathogenesis. Stroke. 2005;36: 253–257. 10.1161/01.STR.0000152336.71224.21 [DOI] [PubMed] [Google Scholar]
  • 4.Akyildiz AC, Speelman L, van Brummelen H, Gutiérrez MA, Virmani R, van der Lugt A, et al. Effects of intima stiffness and plaque morphology on peak cap stress. Biomed Eng Online. 2011;10: 1–13. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Maldonado N, Kelly-Arnold A, Vengrenyuk Y, Laudier D, Fallon JT, Virmani R, et al. A mechanistic analysis of the role of microcalcifications in atherosclerotic plaque stability: potential implications for plaque rupture. AJP Hear Circ Physiol. 2012;303: H619–H628. 10.1152/ajpheart.00036.2012 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Nieuwstadt HA, Akyildiz AC, Speelman L, Virmani R, van der Lugt A, van der Steen AFW, et al. The influence of axial image resolution on atherosclerotic plaque stress computations. J Biomech. 2013;46: 689–695. 10.1016/j.jbiomech.2012.11.042 [DOI] [PubMed] [Google Scholar]
  • 7.Yuan J, Teng Z, Feng J, Zhang Y, Brown AJ, Gillard JH, et al. Influence of material property variability on the mechanical behaviour of carotid atherosclerotic plaques: A 3D fluid-structure interaction analysis. Int j numer method biomed eng. 2015. 10.1002/cnm.2722 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Holzapfel GA, Stadler M, Schulze-Bauer CAJ. A Layer-Specific Three-Dimensional Model for the Simulation of Balloon Angioplasty using Magnetic Resonance Imaging and Mechanical Testing. Ann Biomed Eng. 2002;30: 753–767. 10.1114/1.1492812 [DOI] [PubMed] [Google Scholar]
  • 9.Gao H, Long Q, Graves M, Gillard JH, Li ZY. Carotid arterial plaque stress analysis using fluid-structure interactive simulation based on in-vivo magnetic resonance images of four patients. J Biomech. 2009;42: 1416–1423. 10.1016/j.jbiomech.2009.04.010 [DOI] [PubMed] [Google Scholar]
  • 10.Huang Y, Teng Z, Sadat U, Graves MJ, Bennett MR, Gillard JH. The influence of computational strategy on prediction of mechanical stress in carotid atherosclerotic plaques: Comparison of 2D structure-only, 3D structure-only, one-way and fully coupled fluid-structure interaction analyses. J Biomech. 2014;47: 1465–1471. 10.1016/j.jbiomech.2014.01.030 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Cilla M, Borrás I, Peña E, Martínez MA, Malvè M. A parametric model for analysing atherosclerotic arteries: On the FSI coupling. Int Commun Heat Mass Transf. 2015;67: 29–38. 10.1016/j.icheatmasstransfer.2015.06.017 [DOI] [Google Scholar]
  • 12.Tang D, Yang C, Huang S, Mani V, Zheng J, Woodard PK, et al. Cap inflammation leads to higher plaque cap strain and lower cap stress: An MRI-PET/CT-based FSI modeling approach. J Biomech. 2017;50: 121–129. 10.1016/j.jbiomech.2016.11.011 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Akyildiz AC, Speelman L, Gijsen FJH. Mechanical properties of human atherosclerotic intima tissue. J Biomech. 2014;47: 773–783. 10.1016/j.jbiomech.2014.01.019 [DOI] [PubMed] [Google Scholar]
  • 14.Walsh MT, Cunnane EM, Mulvihill JJ, Akyildiz AC, Gijsen FJH, Holzapfel GA. Uniaxial tensile testing approaches for characterisation of atherosclerotic plaques. J Biomech. 2014;47: 793–804. 10.1016/j.jbiomech.2014.01.017 [DOI] [PubMed] [Google Scholar]
  • 15.Huang X, Yang C, Zheng J, Bach R, Muccigrosso D, Woodard PK, et al. 3D MRI-based multicomponent thin layer structure only plaque models for atherosclerotic plaques. J Biomech. 2016;49: 2726–2733. 10.1016/j.jbiomech.2016.06.002 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Iannaccone F, Debusschere N, De Bock S, De Beule M, Van Loo D, Vermassen F, et al. The influence of vascular anatomy on carotid artery stenting: A parametric study for damage assessment. J Biomech. 2014;47: 890–898. 10.1016/j.jbiomech.2014.01.008 [DOI] [PubMed] [Google Scholar]
  • 17.Sommer G, Regitnig P, Koltringer L, Holzapfel GA. Biaxial mechanical properties of intact and layer-dissected human carotid arteries at physiological and supraphysiological loadings. AJP Hear Circ Physiol. 2010;298: H898–H912. 10.1152/ajpheart.00378.2009 [DOI] [PubMed] [Google Scholar]
  • 18.Kamenskiy A V., Dzenis YA, Kazmi SAJ, Pemberton MA, Pipinos II, Phillips NY, et al. Biaxial mechanical properties of the human thoracic and abdominal aorta, common carotid, subclavian, renal and common iliac arteries. Biomech Model Mechanobiol. 2014;13: 1341–1359. 10.1007/s10237-014-0576-6 [DOI] [PubMed] [Google Scholar]
  • 19.Loree HM, Kamm RD, Stringfellow RG, Lee RT. Effects of Fibrous Cap Thickness on Peak Circumferential Stress in Model Atherosclerotic Vessels. Circulation. 1992;71: 850–858. [DOI] [PubMed] [Google Scholar]
  • 20.Holzapfel GA, Mulvihill JJ, Cunnane EM, Walsh MT. Computational approaches for analyzing the mechanics of atherosclerotic plaques: A review. J Biomech. 2014;47: 859–869. 10.1016/j.jbiomech.2014.01.011 [DOI] [PubMed] [Google Scholar]
  • 21.Cilla M, Peña E, Martínez MA. 3D computational parametric analysis of eccentric atheroma plaque: Influence of axial and circumferential residual stresses. Biomech Model Mechanobiol. 2012;11: 1001–1013. 10.1007/s10237-011-0369-0 [DOI] [PubMed] [Google Scholar]
  • 22.Groen HC, Van Walsum T, Rozie S, Klein S, Van Gaalen K, Gijsen FJH, et al. Three-dimensional registration of histology of human atherosclerotic carotid plaques to in-vivo imaging. J Biomech. 2010;43: 2087–2092. 10.1016/j.jbiomech.2010.04.005 [DOI] [PubMed] [Google Scholar]
  • 23.Stary HC. Natural History and Histological Classification of Atherosclerotic Lesions. Aterioscler Thromb Vasc Biol. 2000;20: 1177–1178. [DOI] [PubMed] [Google Scholar]
  • 24.Lisický O, Malá A, Burša J. Influence of Transversal Resolution on Reconstructing Atherosclerotic Plaque Components. VipIMAGE 2019. 2019. pp. 501–508.
  • 25.Sommer G, Holzapfel GA. 3D constitutive modeling of the biaxial mechanical response of intact and layer-dissected human carotid arteries. J Mech Behav Biomed Mater. 2012;5: 116–128. 10.1016/j.jmbbm.2011.08.013 [DOI] [PubMed] [Google Scholar]
  • 26.Holzapfel GA, Sommer G, Gasser CT, Regitnig P. Determination of layer-specific mechanical properties of human coronary arteries with nonatherosclerotic intimal thickening and related constitutive modeling. J Physiol Hear Circ Physiol. 2005;103: 806–808. 10.1152/ajpheart.00934.2004 [DOI] [PubMed] [Google Scholar]
  • 27.Holzapfel GA, Sommer G, Regitnig P. Anisotropic Mechanical Properties of Tissue Components in Human Atherosclerotic Plaques. J Biomech Eng. 2004;126: 657 10.1115/1.1800557 [DOI] [PubMed] [Google Scholar]
  • 28.Yeoh OH. Some forms of the strain energy function for rubber. Rubber Chemistry and Technology. 1993. pp. 754–771.
  • 29.Marcián P, Narra N, Borák L, Chamrad J, Wolff J. Biomechanical performance of cranial implants with different thicknesses and material properties: A finite element study. Comput Biol Med. 2019;109: 43–52. 10.1016/j.compbiomed.2019.04.016 [DOI] [PubMed] [Google Scholar]
  • 30.Libby P, Pasterkamp G. Requiem for the “vulnerable plaque.” Eur Heart J. 2015;36: 2984–2987. 10.1093/eurheartj/ehv349 [DOI] [PubMed] [Google Scholar]
  • 31.Burke F. CORONARY RISK FACTORS AND PLAQUE MORPHOLOGY IN MEN WITH CORONARY DISEASE WHO DIED SUDDENLY. New Engl J Med Coron. 1997. [DOI] [PubMed] [Google Scholar]
  • 32.Hatsukami TS, Ross R, Polissar NL, Yuan C. Visualization of fibrous cap thickness and rupture in human atherosclerotic carotid plaque in vivo with high-resolution magnetic resonance imaging. Circulation. 2000;102: 959–964. 10.1161/01.cir.102.9.959 [DOI] [PubMed] [Google Scholar]
  • 33.Saam T, Ferguson MS, Yarnykh VL, Takaya N, Xu D, Polissar NL, et al. Quantitative evaluation of carotid plaque composition by in vivo MRI. Arterioscler Thromb Vasc Biol. 2005;25: 234–239. 10.1161/01.ATV.0000149867.61851.31 [DOI] [PubMed] [Google Scholar]
  • 34.Maldonado N, Kelly-Arnold A, Laudier D, Weinbaum S, Cardoso L. Imaging and analysis of microcalcifications and lipid/necrotic core calcification in fibrous cap atheroma. Int J Cardiovasc Imaging. 2015;31: 1079–1087. 10.1007/s10554-015-0650-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35.Kiousis DE, Rubinigg SF, Auer M, Holzapfel GA. A Methodology to Analyze Changes in Lipid Core and Calcification Onto Fibrous Cap Vulnerability: The Human Atherosclerotic Carotid Bifurcation as an Illustratory Example. J Biomech Eng. 2009;131: 121002 10.1115/1.4000078 [DOI] [PubMed] [Google Scholar]
  • 36.Holzapfel Gerhard A. ORW. A New Constitutive Framework for Arterial Wall Mechanics and a Comparative Study of Material Models. J Elast. 2000;61: 1–48. 10.1023/A:1010835316564 [DOI] [Google Scholar]
  • 37.Gasser TC, Ogden RW, Holzapfel GA. Hyperelastic modelling of arterial layers with distributed collagen fibre orientations. J R Soc Interface. 2005;3: 15–35. 10.1098/rsif.2005.0073 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Holzapfel GA, Ogden RW. Biomechanical relevance of the microstructure in artery walls with a focus on passive and active components. Am J Physiol—Hear Circ Physiol. 2018;315: H540–H549. 10.1152/ajpheart.00117.2018 [DOI] [PubMed] [Google Scholar]

Decision Letter 0

Fang-Bao Tian

11 Jun 2020

PONE-D-20-04059

Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma

PLOS ONE

Dear Dr. Lisický,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Jul 26 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Fang-Bao Tian

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

3. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information.

Additional Editor Comments (if provided):

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: I Don't Know

Reviewer #2: No

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors have performed a finite element analysis of a carotid atherosclerotic plaque using an endarterectomy specimen.

They have assessed the effect of wall thickness, MR imaged slice thickness, lipid and fibrous tissue mechanical properties and media anisotropy. They have found that wall thickness and the MR slice thickness are not so critical as the mechanical properties of the lipid and fibrous tissues when computing the peak stress that might be responsible for plaque rupture.

Though it is an interesting exercise, a discussion on plaque characteristics found to be associated with plaque rupture and outcome in current literature is missing and would add critical information and perspective on the impact of their results. It is well known that a thin fibrous cap, a large lipid pool and intraplaque hemorrhage are marks of vulnerable plaque, but this markers are not included, or discussed, here.

Other comments:

Introduction

It is not clear what the author mean with the statement "While 2D histology sections or images of autopsy samples enable us ..... or with samples from endarterectomy where the plaque is resected without media and adventitia". The endarterectomy segments would be analyzed by 2D histology, or where do the 2D histology sections come from? Do the authors need to replace "or" with "of" when they say "While 2D histology sections or images"?

The introduction should include a statement indicating how their methodology is going to overcome the listed problems found in current literature.

Methods

It is unclear whether the authors scanned the endarterectomy specimen prior to histological sectioning, or before, please clarify. Also, they could comment why they did not scan the subject prior to surgery, that would have enable them to have a proper outer wall rendering.

The paragraph of the Methods section discussing the use of only one case and how the results can, or cannot, be transferred to other cases, should be moved to the limitations paragraph in the Discussion.

Discussion

The authors are encouraged to add some discussion on markers for vulnerable plaque, such as the size of the lipid pool, fibrous cap thickness and how their results would be if those were considered, or on how their methodology could accommodate for those markers.

In addition, the authors are encouraged to revise their use of English, there are some grammar and spelling errors that, at times, lead to statements that are incorrect, such as "... lead to the stroke in the carotid arteries", when stroke might be due to carotid stenosis but does not occur in those vessels, but in the brain.

Reviewer #2: Authors Lisický et al. present a manuscript titled “Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma” for possible publication in the PLOS ONE. The authors have employed a Design of Experiment concept with ex vivo imaging data to investigate the effects of various parameters on plaque stress. The authors have also performed a comprehensive analysis on a number of phantom models (50 to be exact) to potentially draw a statistically meaning conclusion. In brief, the authors have highlighted that wall stiffness are more important than wall thickness in predicting plaque stress. Although the study is fundamental sound, the manuscript suffers a few shortfalls. In particular, while the authors have quantified the effects of parameters such as wall thickness, fibrous tissue stiffness, etc., the lack of patient number means that the study is, at best, hypothesis generating. It is unclear how the results would differ even with images from one additional patient. Given the highly doubt reproducibility of the present method clinically, the manuscript cannot be recommended for publication in the PLOS ONE in its current form.

Nevertheless, I have provided a list of suggestions/comments for the authors:

1. In the Abstract: “Except for anisotropy, all the other investigated factors are taken as continuous in the range based on published experimental results”. This sentence is difficult to understand. Consider rephrase.

2. On page 6: “Since the individual vessel wall layers cannot be distinguished in the in vivo MRI scans and the sample harvested at endarterectomy cannot include the media and adventitia layers of the wall, the outer surface of the obtained geometry was used to create the wall volume… equidistantly offset by 0.5 mm… the assumption of constant wall thickness (WT) was adopted here as an appropriate simplification and the thickness was included into DoE as one of the investigated parameters”. While the authors have provided suitable reference for the 0.5 mm offset. It is clear from the Results that the wall thickness can have a major effect on the plaque stress. Further justifications are therefore needed for this assumption, otherwise the present study is just another engineering exercise without real meaning.

3. On page 7: “As the applied FE software Ansys does not offer this material option, the model was implemented via a user material subroutine”. Since this is a user-defined function, it is the authors’ responsibility to thoroughly test and validation its accuracy. Please provide evidences of both validation and verification of this user-defined function as an appendix to the manuscript.

4. On page 10: “To compare models of more patients, a completely different methodology and a statistically significant number of patients would be necessary which is out of scope of this paper.” This is a major concern to the material presented. To provide confidence to the reader, the authors may at least include one or more patient results in the analysis. By varying the input parameters for 1 patient, this study results could be bias.

5. On page 11: “In the DoE methodology, a 2-factorial design was performed and therefore axial points were included (face-centres).” Please explain what axial points (face-centres) is in layman’s terms for wider audience.

6. On page 11: “The first principal stresses were adopted as stress response indicators, especially PPS and PCS; for all the 3D models analysed, they were evaluated in cross sections with a 0.2 mm span”

a. Which is the first principal stress?

b. Why evaluated in cross-sections with a 0.2 mm span? E.g, why not 0.1 mm or 0.3 mm? Please elaborate.

7. On page 12: “Therefore, ex vivo MRI was used for the 3D reconstruction in this study” Not sure the benefit of ex vivo MRI here. It seems like a random variable to increase the complexity of the study with no relevant clinical input.

8. On page 13: “Results near the boundary conditions and the bifurcation are not considered since they cause non-realistic artefacts (stress concentrations due to boundary conditions)”. While artefects near the boundary conditions are acceptable, the effect of bifurcation cannot be ignored. Specifically, plaques are often developed at the bifurcation. The authors might want to explain this in a bit more details.

9. On page 14: Figures 7 and 8 are very difficult to interpret at first sight. Consider redrawing the figures or providing clearer captions.

10. On page 16, Table 3: It is not clear whether there is any clinical meaning to the statistics provided here given it is a single study with only 1 patient. Further, this should be in the Results section.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2020 Sep 29;15(9):e0239447. doi: 10.1371/journal.pone.0239447.r002

Author response to Decision Letter 0


20 Jul 2020

Journal requirements

All files were corrected to meet a PLOS ONE style requirements. All data will be available when accepted. Since we added another patient into the analysis it could not be added as supplementary data. Proper captions were included for supplementary data in our manuscript.

We would like to thank all Reviewers for their comments and suggestions. As a consequence of this review, we have added another patient and edited the text of the manuscript to strengthen and clear up the message of the study. We have also corrected the text where errors were pointed out. Suggestions have been incorporated also in the appropriate paragraphs of the ‘Introduction’, ‘Material and Methods’, ‘Results’, ‘Discussion’ and ‘Conclusion‘ sections as described below in detail. We hope to have addressed their concerns sufficiently.

Reviewer #1:

The authors have performed a finite element analysis of a carotid atherosclerotic plaque using an endarterectomy specimen.

They have assessed the effect of wall thickness, MR imaged slice thickness, lipid and fibrous tissue mechanical properties and media anisotropy. They have found that wall thickness and the MR slice thickness are not so critical as the mechanical properties of the lipid and fibrous tissues when computing the peak stress that might be responsible for plaque rupture.

Though it is an interesting exercise, a discussion on plaque characteristics found to be associated with plaque rupture and outcome in current literature is missing and would add critical information and perspective on the impact of their results. It is well known that a thin fibrous cap, a large lipid pool and intraplaque hemorrhage are marks of vulnerable plaque, but this markers are not included, or discussed, here.

We fully agree with the reviewer that discussion of our results to plaque vulnerability should be included. Therefore, we discuss now also the vulnerability criteria mentioned by the reviewer and their applicability “in vivo” and compare our results and plaque composition with some additional clinical and mechanical reviews related to this problem. Moreover, we have added another patient and the resulting stresses exceeded the globally accepted threshold value of plaque tissue strength, thus suggesting that although the strict plaque vulnerability definition is not met, high stresses may occur and cause a plaque rupture.

Other comments:

Introduction

It is not clear what the author mean with the statement "While 2D histology sections or images of autopsy samples enable us ..... or with samples from endarterectomy where the plaque is resected without media and adventitia". The endarterectomy segments would be analyzed by 2D histology, or where do the 2D histology sections come from? Do the authors need to replace "or" with "of" when they say "While 2D histology sections or images"?

The sentence was reformulated to avoid misunderstanding. Page 4, line 72-76.

The introduction should include a statement indicating how their methodology is going to overcome the listed problems found in current literature.

We accept the reviewer´s proposal and a corresponding sentence was added in the introduction section. Page 5, line 82-84.

Methods

It is unclear whether the authors scanned the endarterectomy specimen prior to histological sectioning, or before, please clarify. Also, they could comment why they did not scan the subject prior to surgery, that would have enable them to have a proper outer wall rendering.

At the beginning of „Histology“ section it is stated that histology was performed after MRI. Although a pre-operative imaging like MRI might provide information about outer wall boundaries, the boundary is hard to distinguish from other soft tissues in standard MRI scans and it is not possible to distinguish the inner wall surface when a plaque is present. Moreover, the combination of pre and post-operative imaging would require e.g. multimodal image registration as Moerman et al. [1] proposed recently with adjustments for unloaded geometry, which is out of range of the proposed study taking the scanned geometry as load-free. However, since such a combination was not ever used for computational modelling it brings potential for further studies.

The paragraph of the Methods section discussing the use of only one case and how the results can, or cannot, be transferred to other cases, should be moved to the limitations paragraph in the Discussion.

The reviewer´s comment was accepted and this section was moved into limitations. Moreover, we added another patient into this study where all the main results were confirmed.

Discussion

The authors are encouraged to add some discussion on markers for vulnerable plaque, such as the size of the lipid pool, fibrous cap thickness and how their results would be if those were considered, or on how their methodology could accommodate for those markers.

As mentioned above in the overall reviewer´s comment response, we discussed this issue within the discussion section with some additional clinical and mechanical reviews and papers. We add the reference Burke et al. [2] defining the critical fibrous cap thickness as lower than 65 µm which is below the resolution of MRI images and thus not applicable in clinics. In contrast, our methodology is seeking for parameters potentially detectable in vivo and trying to reduce the impact of the parameters which cannot be evaluated in vivo and thus create an additional criterion completing the actually applied markers. Future improvements of imaging methods or material data could improve quality of our models and their predictions more easily then to reach an in vivo detectability of fibrous cap thickness close to the critical value. The lipid pool size was considered in advance in the selection of suitable patients as mentioned in the methodology section. Page 17-18, line 341-352.

In addition, the authors are encouraged to revise their use of English, there are some grammar and spelling errors that, at times, lead to statements that are incorrect, such as "... lead to the stroke in the carotid arteries", when stroke might be due to carotid stenosis but does not occur in those vessels, but in the brain.

We accepted the reviewer´s proposal and a thorough English revision was performed.

Reviewer #2:

Authors Lisický et al. present a manuscript titled “Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma” for possible publication in the PLOS ONE. The authors have employed a Design of Experiment concept with ex vivo imaging data to investigate the effects of various parameters on plaque stress. The authors have also performed a comprehensive analysis on a number of phantom models (50 to be exact) to potentially draw a statistically meaning conclusion. In brief, the authors have highlighted that wall stiffness are more important than wall thickness in predicting plaque stress. Although the study is fundamental sound, the manuscript suffers a few shortfalls. In particular, while the authors have quantified the effects of parameters such as wall thickness, fibrous tissue stiffness, etc., the lack of patient number means that the study is, at best, hypothesis generating. It is unclear how the results would differ even with images from one additional patient. Given the highly doubt reproducibility of the present method clinically, the manuscript cannot be recommended for publication in the PLOS ONE in its current form.

Nevertheless, I have provided a list of suggestions/comments for the authors:

We fully agree with the reviewer that our previous use of a single patient was questionable and therefore we added another patient into the analysis to strengthen our results. All the pointed comments are addressed below in detail.

1. In the Abstract: “Except for anisotropy, all the other investigated factors are taken as continuous in the range based on published experimental results”. This sentence is difficult to understand. Consider rephrase.

The sentence was reformulated to improve understanding. Page 2, line 28

2. On page 6: “Since the individual vessel wall layers cannot be distinguished in the in vivo MRI scans and the sample harvested at endarterectomy cannot include the media and adventitia layers of the wall, the outer surface of the obtained geometry was used to create the wall volume… equidistantly offset by 0.5 mm… the assumption of constant wall thickness (WT) was adopted here as an appropriate simplification and the thickness was included into DoE as one of the investigated parameters”. While the authors have provided suitable reference for the 0.5 mm offset. It is clear from the Results that the wall thickness can have a major effect on the plaque stress. Further justifications are therefore needed for this assumption, otherwise the present study is just another engineering exercise without real meaning.

Full 3D models with patient-specific geometry are taken as highest standard of computational modelling. However, in contrast to models with simplified geometry they mostly do not consider the vessel wall thickness with its specific material properties. Local variable wall thickness cannot be directly obtained from in vivo imaging resulting in some constant assumptions as mentioned in references. Our approach, assuming constant wall thickness has shown large differences in wall deformation which were not considered in previous studies. Some models without consideration of the wall gave deformations hardly believable in a real artery with atheroma (some 2 mm in internal CA) while deformation of the model with specific properties of arterial wall considered was much lower in all the investigated cases. Therefore, we believe that our assumption, although not rigorously supported, improves significantly the level of computational model and may be useful for future modelling of plaque vulnerability. Investigation of the influence of specific wall thickness might be inspiration for future works though it should be supported with experimental evaluation of wall thickness.

3. On page 7: “As the applied FE software Ansys does not offer this material option, the model was implemented via a user material subroutine”. Since this is a user-defined function, it is the authors’ responsibility to thoroughly test and validation its accuracy. Please provide evidences of both validation and verification of this user-defined function as an appendix to the manuscript.

We accepted the reviewer´s suggestion and added validation and verification via appendix (S1 appendix). For this purpose, we used experiments and predictions from a frequently cited paper dealing with coronary arteries and compared our implemented model with experimental data and original analytical model. We simulated the uniaxial tension test as the authors did in the paper and our user-defined subroutine gave a nearly identical response; the differences are far below common inaccuracies of numerical methods.

4. On page 10: “To compare models of more patients, a completely different methodology and a statistically significant number of patients would be necessary which is out of scope of this paper.” This is a major concern to the material presented. To provide confidence to the reader, the authors may at least include one or more patient results in the analysis. By varying the input parameters for 1 patient, this study results could be bias.

We accepted the reviewer´s suggestion and added another patient in the analysis. Thus the cited sentence was omitted and the corresponding parts of the text were changed and highlighted in the text. Main conclusions based on the first patients were paralleled by the additional patient. The previous results were really partially biased but only in the case of MRI slice thickness factor which was found significant for sample 2. Here the explanation is quite straightforward, a specific geometry of the plaque and its components may play a key role in plaques and locations where a locally thin fibrous cap occurs and may not be included when a high slice thickness is concerned. All the other conclusions were confirmed also with the additional patient.

5. On page 11: “In the DoE methodology, a 2-factorial design was performed and therefore axial points were included (face-centres).” Please explain what axial points (face-centres) is in layman’s terms for wider audience.

The sentence was reformulated, and the methodology was explained in greater detail. Page 10-11, line 204-207.

6. On page 11: “The first principal stresses were adopted as stress response indicators, especially PPS and PCS; for all the 3D models analysed, they were evaluated in cross sections with a 0.2 mm span”

a. Which is the first principal stress?

First principal stress is a term quite common in mechanics and it expresses the maximal (tensile) stress which occurs in any direction in the investigated point or even whole computational model. For non-technical readers, the term

maximal was added in parentheses. Page 11, line 209.

b. Why evaluated in cross-sections with a 0.2 mm span? E.g, why not 0.1 mm or 0.3 mm? Please elaborate.

The choice 0.2 mm span relates to the axial resolution of the MRI images, because within this distance all values (geometrical as well as mechanical) are numerically interpolated, thus no extreme can occur in between. In our best model axial resolution was 0.25 mm, and finite element size is 0.3 mm thus this span would be also sufficient to capture any maxima.

7. On page 12: “Therefore, ex vivo MRI was used for the 3D reconstruction in this study” Not sure the benefit of ex vivo MRI here. It seems like a random variable to increase the complexity of the study with no relevant clinical input.

We are not sure here whether the reviewer means benefit against histology or against in vivo MRI. Evidently, ex vivo MRI is fast and enables us to obtain the patient-specific plaque geometry distinguishing individual components. In contrast, creation of histological slices is very lab-time consuming and suffers from shape distortions during the histological processing, thus it is less suitable than ex vivo MRI. The benefit against standard in vivo MRI is in better axial and in-plane resolution. The choice of the slice thickness as one of the investigated parameters was motivated by the need to test, whether a lower axial resolution gives correct results. As the in-plane resolution of in vivo MRI scanning can be improved e.g. with using a special carotid coil, as mentioned in the manuscript, information on the needed axial resolution is important just for clinical application. A high in vivo MRI axial resolution may be inappropriate when reconstructing plaques in a length of ca 20 mm. That was the reason for slice thickness factor inclusion, which can be varied easily for endarterectomy samples. Since an additional patient showed that a slice thickness may play an important role when investigating stresses, we think that focus on this problem should be even extended in future work. Variations in slice thickness in vivo cause longer scanning time which was found unsuitable for patients and made it impossible to have representative images. Even though, studies [3,4] found in vivo MRI suitable to distinguish plaque components, they also mentioned that some images were inappropriate and were excluded from evaluation. That would not allow reconstructing geometry model.

8. On page 13: “Results near the boundary conditions and the bifurcation are not considered since they cause non-realistic artefacts (stress concentrations due to boundary conditions)”. While artefects near the boundary conditions are acceptable, the effect of bifurcation cannot be ignored. Specifically, plaques are often developed at the bifurcation. The authors might want to explain this in a bit more details.

In both evaluated patients, no maximal stresses were found near the bifurcation. Complex geometry as carotid apex is, may cause problems in discretization (mostly in contact with vessel wall) and non-realistic concentrations may appear. However, with element size of 0.3 mm used in our study the critical region would not exceed this value. In case where stress concentration occurs finite element mesh is refined to ensure proper global results.

9. On page 14: Figures 7 and 8 are very difficult to interpret at first sight. Consider redrawing the figures or providing clearer captions.

We accepted the reviewer´s suggestion and the captions were reformulated. Moreover, images were slightly amended to make the representation clearer. Page 15 and 17.

10. On page 16, Table 3: It is not clear whether there is any clinical meaning to the statistics provided here given it is a single study with only 1 patient. Further, this should be in the Results section.

We accepted the reviewer´s suggestions and extended the study by one more patient. However, the proposed statistics is related to a specific patient separately as it results from the used methodology. The second patient showed similar results, thus pointing out certain regularities which should not be overlooked.

We thank you again for your consideration of our revised manuscript.

1. Moerman AM, Dilba K, Korteland S, Poot DHJ, Klein S, van der Lugt A, et al. An MRI-based method to register patient-specific wall shear stress data to histology. PLoS One. 2019;14: e0217271.

2. Burke F. CORONARY RISK FACTORS AND PLAQUE MORPHOLOGY IN MEN WITH CORONARY DISEASE WHO DIED SUDDENLY. New Engl J Med Coron. 1997.

3. Saam T, Ferguson MS, Yarnykh VL, Takaya N, Xu D, Polissar NL, et al. Quantitative evaluation of carotid plaque composition by in vivo MRI. Arterioscler Thromb Vasc Biol. 2005;25: 234–239. doi:10.1161/01.ATV.0000149867.61851.31

4. Hatsukami TS, Ross R, Polissar NL, Yuan C. Visualization of fibrous cap thickness and rupture in human atherosclerotic carotid plaque in vivo with high-resolution magnetic resonance imaging. Circulation. 2000;102: 959–964. doi:10.1161/01.CIR.102.9.959

Decision Letter 1

Fang-Bao Tian

19 Aug 2020

PONE-D-20-04059R1

Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma

PLOS ONE

Dear Dr. Lisický,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Oct 03 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Fang-Bao Tian

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: I Don't Know

Reviewer #2: No

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: No

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #2: The authors have addressed most of my suggestions and the quality of the manuscript has improved. There are still a few minor concerns and I would truly appreciate if the authors can briefly address these issues:

1) A statement or two explaining the limitation of using ex vivo data in the present analysis. In particular, briefly explain how ex vivo data may be different from in vivo data once the artery/tissue leaves the human body.

2) While it is assuring that the second patient's results are within the predicted ballpark, I remain concern the term "statistical significant" in the analysis.

I suggest refining this statement. "Despite this limitation, comparable statistical significance of all results was achieved except for MRI slice thickness factor which is strongly related to the complexity of geometry and its inter-patient variability."

3) The authors may want to carefully proof read the manuscript. Here is a non exclusive list of typos/grammatical errors: line 83; lines 154-155; line 263: define ANOVA; lines 295-296; line 362 (58 divided by 147 kPa?); line 422; line 468, etc.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2020 Sep 29;15(9):e0239447. doi: 10.1371/journal.pone.0239447.r004

Author response to Decision Letter 1


4 Sep 2020

Thank you very much for the comments on our manuscript entitled “Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma” (PONE-D-20-04059R1). We have addressed the remaining minor concerns of Reviewer 2 as follows:

The authors have addressed most of my suggestions and the quality of the manuscript has improved. There are still a few minor concerns and I would truly appreciate if the authors can briefly address these issues:

1) A statement or two explaining the limitation of using ex vivo data in the present analysis. In particular, briefly explain how ex vivo data may be different from in vivo data once the artery/tissue leaves the human body.

As required, explanation of differences between geometries based on in vivo and ex vivo imaging is added in Limitation Section where the consequences are discussed in greater detail now. Page 23, line 471-483.

2) While it is assuring that the second patient's results are within the predicted ballpark, I remain concern the term "statistical significant" in the analysis.

I suggest refining this statement. "Despite this limitation, comparable statistical significance of all results was achieved except for MRI slice thickness factor which is strongly related to the complexity of geometry and its inter-patient variability."

The statement was reformulated to reflect better the limitations given by the low number of patient-specific geometries. Page 23, line 484-489.

3) The authors may want to carefully proof read the manuscript. Here is a non exclusive list of typos/grammatical errors: line 83; lines 154-155; line 263: define ANOVA; lines 295-296; line 362 (58 divided by 147 kPa?); line 422; line 468, etc.

Careful proofreading of the manuscript was done and all the mentioned (and some other) typos were corrected.

Decision Letter 2

Fang-Bao Tian

7 Sep 2020

Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma

PONE-D-20-04059R2

Dear Dr. Lisický,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Fang-Bao Tian

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Fang-Bao Tian

15 Sep 2020

PONE-D-20-04059R2

Consideration of stiffness of wall layers is decisive for patient-specific analysis of carotid artery with atheroma

Dear Dr. Lisický:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Fang-Bao Tian

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Appendix. Verification of Ansys user subroutine for media material model.

    (DOCX)

    S1 Fig

    (TIF)

    S2 Fig. Geometry model of patient 2.

    Section of sample 2 model with two large lipid cores.

    (TIF)

    S1 File. Ethical agreement.

    (PDF)

    Data Availability Statement

    All supporting data (models, statisticas) are available on DOI: https://doi.org/10.6084/m9.figshare.12937196.


    Articles from PLoS ONE are provided here courtesy of PLOS

    RESOURCES