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. 2020 Sep 30;15(9):e0239606. doi: 10.1371/journal.pone.0239606

Accuracy of C-reactive protein, procalcitonin, serum amyloid A and neopterin for low-dose CT-scan confirmed pneumonia in elderly patients: A prospective cohort study

Virginie Prendki 1,2, Astrid Malézieux-Picard 1,*,#, Leire Azurmendi 3, Jean-Charles Sanchez 2,3, Nicolas Vuilleumier 2,3,4, Sebastian Carballo 2,5, Xavier Roux 1,6, Jean-Luc Reny 2,5, Dina Zekry 1,2, Jérôme Stirnemann 2,5,, Nicolas Garin 2,5,7,; on behalf of the PneumOldCT study group
Editor: Muhammad Adrish8
PMCID: PMC7526885  PMID: 32997689

Abstract

Objective

The diagnosis of pneumonia based on semiology and chest X-rays is frequently inaccurate, particularly in elderly patients. Older (C-reactive protein (CRP); procalcitonin (PCT)) or newer (Serum amyloid A (SAA); neopterin (NP)) biomarkers may increase the accuracy of pneumonia diagnosis, but data are scarce and conflicting. We assessed the accuracy of CRP, PCT, SAA, NP and the ratios CRP/NP and SAA/NP in a prospective observational cohort of elderly patients with suspected pneumonia.

Methods

We included consecutive patients more than 65 years old, with at least one respiratory symptom and one symptom or laboratory finding suggestive of infection, and a working diagnosis of pneumonia. Low-dose CT scan and comprehensive microbiological testing were done in all patients. The index tests, CRP, PCT, SAA and NP, were obtained within 24 hours. The reference diagnosis was assessed a posteriori by a panel of experts considering all available data, including patients’ outcome. We used area under the curve (AUROC) and Youden index to assess the accuracy and obtain optimal cut-off of the index tests.

Results

200 patients (median age 84 years) were included; 133 (67%) had pneumonia. AUROCs for the diagnosis of pneumonia was 0.64 (95% CI: 0.56–0.72) for CRP; 0.59 (95% CI: 0.51–0.68) for PCT; 0.60 (95% CI: 0.52–0.69) for SAA; 0.41 (95% CI: 0.32–0.49) for NP; 0.63 (95% CI: 0.55–0.71) for CRP/NP; and 0.61 (95% CI: 0.53–0.70) for SAA/NP. No cut-off resulted in satisfactory sensitivity or specificity.

Conclusions

Accuracy of traditional (CRP, PCT) and newly proposed biomarkers (SAA, NP) and ratios of CRP/NP and SAA/NP was too low to help diagnosing pneumonia in the elderly. CRP had the highest AUROC.

Clinical Trial Registration

NCT 02467092

Introduction

Pneumonia is the leading cause of death from infectious disease in elderly patients, and is frequently suspected in the emergency department. In addition of suggestive symptoms and signs, the diagnosis requires the presence of a new infiltrate on radiologic imaging, usually chest X-ray (CXR). However, in the elderly, symptoms and signs are often atypical, not specific, or lacking, and other frequent diseases can mimic pneumonia (eg. heart failure, chronic obstructive pulmonary disease). Finally, CXR is often inconclusive. These drawbacks may cause under- or overtreatment [13]. Prospective diagnostic studies have found a better accuracy of CT scan compared with CXR in adult and elderly patients suspected of pneumonia [4, 5]. CT-scan confirmed pneumonia is currently the best reference diagnosis for pneumonia [6].

Serum biomarkers are potential valuable diagnostic tools, and are more convenient to use than CT-scan. C-reactive protein (CRP) and procalcitonin (PCT) have been widely tested for the diagnosis of pneumonia in adults, but few studies have included elderly patients [7, 8]. In recent studies, serum Amyloid A (SAA) and neopterin (NP) were predictive of stroke-associated infections, especially pneumonia [9, 10]. The ratio CRP/NP has been proposed to discriminate an exacerbation of chronic obstructive pulmonary disease (COPD) from pneumonia [11].

We hypothesized that biomarkers would improve the clinical and radiological diagnosis of pneumonia, and assessed the accuracy of CRP, PCT, SAA, NP and the ratios CRP/NP and SAA/NP in the PneumOldCT study, a cohort of elderly patients with CT-scan confirmed pneumonia. We compared accuracy of the biomarkers with accuracy of the usual diagnostic process and reported their optimal cut-off value.

Materials and methods

Setting and participants

This is a diagnostic study nested in a prospective observational cohort. Consecutive patients older than 65 years and hospitalized with suspected pneumonia in Geneva University Hospitals, a 1800-bed tertiary-care hospital, were eligible [5]. Patients had at least one respiratory symptom or sign and one symptom, sign, or laboratory finding suggestive of acute infection, with a working diagnosis of pneumonia warranting antibiotic treatment [5]. The choice and duration of antibiotic treatment were at the discretion of the treating physician. Patients diagnosed with pneumonia during the previous 6 months, or treated with antibiotics for more than 48 hours before inclusion, were excluded. All patients had CXR and low-dose CT-scan (LDCT) without injection of contrast medium performed within 24 hours after inclusion. The study was approved by Geneva’s Institutional Review Board (CER-14-250) and registered at clinicaltrials.gov (NCT02467192). Informed consent was obtained from all patients or next of kin.

Recorded data

Demographic data, comorbidities, vital signs, clinical findings, severity scores of pneumonia and the results of laboratory tests (including CRP and PCT) were recorded at admission. Comprehensive microbiological testing was performed in all patients. It consisted of naso-pharyngeal swabs (NPS) for detection of common viral pathogens by polymerase chain reaction (PCR); blood and sputum cultures; and testing for Streptococcus pneumoniae and Legionella pneumophila antigenuria. Only high quality sputum samples were sent to culture.

Index tests

Blood samples for CRP, PCT, SAA and NP were obtained within 24 hours after admission. CRP and PCT measurement were performed in routine care and SAA and NP were measured retrospectively. Plasma CRP concentrations were measured via immunoturbidimetry (Roche/Hitachi Cobas c702 systems) and PCT using a rapid assay with a sensitivity of 0.06 μg/L (Kryptor, Brahms, Hennigsdorf). Levels of SAA in plasma were determined using an electrochemiluminescence detection system using multi-array technology (SECTOR Imager 2400, MSD, Gaithersburg) [12]. Determination of NP was performed using a competitive enzyme-linked immunosorbent assay (ELISA) (ELItest® Neopterin-Screening, Brahms).

Usual diagnosis and reference diagnosis

The physician in charge of the patient was asked to rate the probability of pneumonia before the performance of LDCT on a three-level Likert scale (low, intermediate and high), based on the results of routine blood tests and CXR. The diagnosis of pneumonia was considered positive (respectively “negative”) if the rated probability of pneumonia was “intermediate” or “high” (respectively “low”). This diagnosis was used to assess the accuracy of the usual diagnostic process.

The reference diagnosis was assessed a posteriori by senior physicians (experts) experienced in the diagnosis and management of pneumonia, including radiologists specialized in thoracic imaging. The experts had access to all clinical, biological (including CRP and PCT, but not SAA and NP), and microbiological data. They were aware of patients’ evolution and final outcomes, and had access to all CXR and LDCT imagings. They rated the probability of pneumonia according to the same Likert scale as the emergency physician. Discordant cases were reviewed using a Delphi method until consensus was reached. The reference diagnosis was considered positive (respectively “negative”) if the panel of experts rated the probability of pneumonia “intermediate” or “high” (respectively “low”) on the Likert scale. In a sensitivity analysis, only patients with a high probability of disease were considered positive.

Data analysis

Sample size is based on the power calculation of the original study [5]. We used frequencies, percentage, and median with interquartile range for descriptive purposes. Variables were compared between patients with and without pneumonia in univariate analysis using the Mann-Whitney-Wilcoxon test or the Student’s test for continuous variables, and Fisher’s exact test or Chi-square test for categorical variables, as appropriate. We computed sensitivity, specificity, positive and negative predictive values, we constructed Receiver Operating Characteristic curves for each biomarker and obtained the AUROC with 95% CI. The best cut-off value of biomarkers was determined with the Youden index. The AUROCs were compared using De Long test.

To assess if use of any tested biomarker adds information on top of routinely collected clinical variables, we built a clinical score predicting the presence of pneumonia, using clinical symptoms and signs present at admission and associated with the diagnosis in univariate analysis (p< 0.20) and obtained the AUROC of the score with 95% CI. We then added separately each tested biomarker, dichotomized at the best predicted cut-off, to the clinical score, and computed AUROC of the new score.

All p values are two-tailed and considered significant for p<0.05. Data were analyzed using the R statistical software package, version 3.1.1 (R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/), and SPSS (IBM SPSS Statistics for Windows, Version 25.0. Armonk, NY: IBM Corp).

Results

Patients’ characteristics

Of 899 patients screened, 200 (median age 84 years, IQR: 78.6–90.2) were included. CRP was available in all patients and PCT in 185. SAA and NP were measured a posteriori in 192 patients. Sex ratio was approximately 1. Forty-seven percent of the patients were 85 years or older. Twenty-one patients (10.5%) lived in a nursing home. Active smokers had more frequently pneumonia. (p = 0.08). Main comorbidities were cardiovascular diseases (n = 103, 51.5%), cognitive impairment (n = 66, 34.5%) and chronic renal failure (n = 60, 30.0%). Cough (n = 170, 85%), dyspnea (n = 145, 72.5%) and crackles (n = 171, 85.5%) were the most frequent symptoms and signs. The median CURB65 score was 2, and 30-day mortality was 7%. Expert panel classified 99 patients (49.5%) as having high, 34 (17.0%) intermediate, and 67 (33.5%) low probability of disease. Hence, expert panel classified pneumonia as present in 133 patients and absent in 67. In patients with pneumonia, a pathogen was identified in 55 (41.4%). The main characteristics of these two groups are reported in Table 1.

Table 1. Baseline characteristics of the 200 patients included.

Characteristics No. (%) or Median |IQR]
All patients (n = 200 unless stated) Pneumonia excluded (n = 67) Pneumonia confirmed (n = 133)
Demographics
 Age (years) 84 [79–90] 86 [80–92] 83 [78–89]
 Female gender 98 (49.0) 38 (56.7) 60 (45.1)
 Active smoker, n(%) (n = 199) 34 (17.0) 7 (10.4) 27 (20.3)
 Living place
  Home 172 (86.0) 55 (82.1) 117 (88.0)
  Nursing home 21 (10.5) 10 (15.0) 11 (8.3)
  Other 7 (3.5) 2 (2.9) 5 (3.7)
Comorbidities
 Cardiovascular disease 103 (51.5) 37 (55.2) 66 (49.6)
 Chronic obstructive pulmonary disease (n = 197) 35 (17.8) 9 (13.4) 26 (20.0)
 Chronic renal disease 60 (30.0) 24 (35.8) 36 (27.1)
 Cerebrovascular disease 31 (15.5) 11 (16.4) 20 (15.0)
 Immunosuppressive therapy (n = 199) 15 (7.5) 3 (4.5) 12 (9.0)
 Diabetes mellitus 45 (22.5) 13 (19.4) 32 (24.1)
 Chronic liver disease 11 (5.5) 3 (4.5) 8 (6.0)
 Active cancer (n = 196) 17 (8.7) 3 (4.6) 14 (10.7)
 Swallowing disorders (n = 177) 28 (15.8) 9 (14.1) 19 (16.8)
 Poor oral health (n = 175) 38 (21.7) 11 (19.0) 27 (23.1)
 Cognitive impairment (n = 193) 66 (34.5) 27 (42.2) 39 (30.7)
Scores
Charlson comorbidity index (n = 165)
 Mean 3 (1–10) 3 (1–10) 3 (1–9)
 Score = 1, n(%) 39 (23.6) 14 (25.5) 25 (22.7)
 Score = 2, n(%) 44 (26.7) 16 (29.1) 28 (25.5)
 Score >2, n(%) 82 (49.7) 30 (45.4) 57 (51.8)
Mini mental state examination n = 162) 24 (19–27) 22 (15–27) 24 (19–27)
Mini nutritional assessment (n = 178) 8 (6–11) 8 (6–10) 9 (6–11)
Symptoms and signs at admission
 Confusion 92 (46.0) 32 (47.8) 60 (45.1)
 Falls 71 (35.5) 29 (43.3) 42 (31.6)
 Respiratory rate >20/min 158 (79.4) 49 (73.1) 109 (82.6)
 Fever (temperature >37.8 °C) 103 (51.5) 29 (43.3) 84 (55.6)
 Cough 170 (85.0) 50 (74.6) 120 (90.2)
 Sputum production 74 (37.0) 25 (37.3) 49 (36.8)
 Chest pain 35 (17.5) 9 (13.4) 26 (19.5)
 Dyspnea 145 (72.5) 50 (74.6) 95 (71.4)
 Crackles 171 (85.5) 57 (85.1) 114 (85.7)
 Oxygen saturation <90% 102 (51.0) 30 (44.8) 72 (54.1)
 Pulse rate >125/min 13 (6.5) 6 (8.9) 7 (5.3)
 SBP <90 mmHg or DBP < …60 mmHg 34 (17.0) 10 (14.9) 24 (18.0)
Laboratory findings
 Leukocytes (103 per mm3) 11.0 [8.2–14.0] 10.7 [7.9–13.1] 11.3 [8.6–14.7]
 Urea (mg.L-1) 7.9 [6.0–11.9] 8.3 [6.2–12.8] 7.7 [5.7–10.8]
 NT-proBNP (ng.L-1) 1836.5 [666.8–3800.8] 1884.0 [649.5–3550.0] 1826.0 [685.5–3860.5]
 Prealbumin (g.L-1) 122.0 [95.0–162.0] 131.0 [99.0–167.0] 118.5 [86.7–157.2]
 Albumin (g.L-1) 35.0 [32.0–38.0] 35.0 [32.0–37.0] 35.0 [31.0–38.0]
 C-reactive protein (mg.L-1) 84.0 [45.8–159.7] 62.7 [38.5–107.5] 100.7 [59.0–205.2]
 Procalcitonin (μg.L-1) 0.3 [0.1–1.3] 0.2 [0.1–0.7] 0.4 [0.1–1.9]
 Serum amyloid A (μg.L-1) 265.0 [247.8–285.2] 262.0 [231.8–278.0] 267.5 [252.0–287.8]
 Neopterin (nmol.L-1) 7.6 [4.7–13.4] 9.3 [5.9–14.0] 6.6 [4.5–12.6]
Pathogen identified, n(%)
 Bacterial 22 (11.0) 4 (6.0) 18 (32.7)
 Viral 62 (31.0) 25 (37.3) 37 (67.3)
 None 116 (58.0) 38 (56.7) 78 (58.6)
Vaccination status, n(%)
 Influenza vaccination (n = 182) 103 (56.6) 36 (63.2) 67 (53.6)
 Pneumococcal vaccination (n = 177) 7 (3.9) 2 (3.6) 5 (4.1)
Disease severity, n(%)
 PSI score 102 [87–121] 104 [87–121] 98 [86–121]
 CURB 65 2 [2–3] 2 [2–3] 2 [2–3]
 CURB 65 >2 89 (44.5) 28 (41.8) 61 (45.9)
Outcome
 30-day mortality 14 (7.0) 4 (6.0) 10 (7.5)
 90-day mortality (n = 198) 29 (14.6) 10 (14.9) 19 (14.3)

Laboratory values and vital signs were obtained at hospital admission.

Definitions: Immunosuppressive therapy: prednisone for more than two weeks; or receipt of other immunosuppressive drugs. Cognitive impairment was diagnosed after geriatrician evaluation (at least CDR 1 dementia). Swallowing disorders: observed during the hospitalization

Oral health rated as good, medium or poor

Abbreviations: CURB65 is a pneumonia severity score based on confusion, respiratory rate, blood pressure, and age 65 or older. DBP: diastolic blood pressure SBP: systolic blood pressure

Index tests results

The median levels of all four biomarkers differed significantly between patients with and without pneumonia (Fig 1). The median values of CRP were 62.7 mg.L-1 [38.5–107.5] and 100.7 mg.L-1 [59.0–205.2] (p = 0.001), and of PCT 0.2 μg.L-1 [0.1–0.7] and 0.4 μg.L-1 [0.1–1.9] (p<0.05) in patients with and without pneumonia, respectively. The corresponding values of SAA were 262.0 μg.L-1 [231.8–278.0] and 267.5 μg.L-1 [252.0–287.8] (p<0.05), and of NP 9.3 nmol.L-1 [5.9–14.0] and 6.6 nmol.L-1 [4.5–12.6] in patients with and without pneumonia.

Fig 1. C-reactive protein (CRP), procalcitonin (PCT), Serum Amyloid A (SAA) and neopterin (NP) boxplot in patients with and without pneumonia.

Fig 1

AUROC for pneumonia diagnosis was 0.64 (95% CI: 0.56–0.72) for CRP; 0.59 (95% CI: 0.51–0.68) for PCT; 0.60 (95% CI: 0.52–0.69) for SAA; 0.41 (95% CI: 0.32–0.49) for NP; 0.63 (95% CI: 0.55–0.71) for CRP/NP and 0.61 (95% CI: 0.53–0.70) for SAA/NP (Fig 2). The AUROC of CRP did not differ significantly from the AUROC of any other biomarker by de Long test (results not shown). The AUROC of the usual diagnostic process was 0.55 (95% CI 0.46–0.64). The AUROC of all four biomarkers using the alternative reference diagnosis definition (considering only the patients with a high probability of disease as positive) were similar and are not reported.

Fig 2. ROC curves for the diagnosis of pneumonia.

Fig 2

a) C-reactive protein Area under the curve [95% CI] = 0.64 [0.56–0.72]. Optimal cut-off point at 109.4 mg.L-1. b) Procalcitonin Area under the curve [95% CI] = 0.59 [0.51–0.68]. Optimal cut-off point at 1.06 μg.L-1. c) Neopterin Area under the curve [95% CI] = 0.41 [0.32–0.49]. Optimal cut-off point at 16.4 nmol.L-1. d) Serum amyloid A Area under the curve [95% CI] = 0.60 [0.52–0.69]. Optimal cut-off point at 15.3 μg.L-1.

The cut-off values of CRP, PCT, SAA, NP, CRP/NP, and SAA/NP calculated with Youden method, were set at 109.4 mg.L-1 (sensitivity 50% and specificity 76%), 1.1 μg.L-1 (37% and 83%), 282.0 μg.L-1 (39% and 81%), 16.4 nmol.L-1 (19% and 84%), 15.24 (45% and 81%) and 36.41 (46% and 77%), respectively (Table 2). No cut-off resulted in sensitivity or specificity values likely to be useful in clinical practice.

Table 2. Sensitivity, specificity, positive and negative predictive values according to C-reactive protein, procalcitonin, serum amyloid A, neopterin, C-reactive protein/neopterin and serum amyloid A/neopterin at the best cut-off values (computed with Youden index).

CRP (mg.L-1) PCT (μg.L-1) SAA (μg.L-1) NP (nmol.L-1) CRP/NP SAA/NP
AUROC (95%CI) 0.64 (0.56–0.72) 0.59 (0.51–0.68) 0.60 (0.52–0.69) 0.41 (0.32–0.49) 0.63 (0.55–0.71) 0.61 (0.53–0.70)
Cut-off 109.4 1.1 282.0 16.4 15.24 36.41
Sensitivity 50% 37% 39% 19% 45% 46%
Specificity 76% 83% 81% 84% 81% 77%
PPV 80% 80% 81% 71% 83% 81%
NPV 43% 41% 39% 33% 41% 41%

Abbreviations: AUROC (Area Under the Receiver Operating Curve), CRP for C-reactive protein, PCT for procalcitonin, SAA for serum amyloid A, NP for neopterin, PPV for positive predictive values, NPV for negative predictive values

Cough, tachypnea, fever, and falls (as presenting signs or symptoms) were associated with pneumonia with a p value < 0.20. We dismissed falls as this is not widely described as a predictor of pneumonia, and built a clinical score by adding one point for the presence of each of cough, tachypnea and fever. AUROC of the clinical score and AUROCs of scores obtained by adding one point for each dichotomized biomarker to the clinical score are compared in Table 3.

Table 3. AUROCs of a clinical score with and without biomarkers for the prediction of pneumonia.

AUROC clinical score (95% CI) AUROC clinical score plus biomarker (95% CI)
CRP (cut-off: 110 mg L-1) 0.63 (0.55–0.71) 0.68 (0.60–0.76)
CRP / neopterin (cut-off 15) 0.63 (0.55–0.71) 0.67 (0.59–0.75)
SAA / neopterin (cut-off 37.4) 0.63 (0.55–0.71) 0.66 (0.58–0.74)
SAA (cut-off 282.0 μg. L-1) 0.63 (0.55–0.71) 0.65 (0.56–0.73)
PCT (cut-off 1.1 μg. L-1) 0.63 (0.55–0.71) 0.65 (0.57–0.73)

Discussion

This study assesses the diagnostic value of serum biomarkers in a cohort of elderly patients suspected of pneumonia. The accuracy of traditional infection biomarkers (CRP and PCT) was low, and newly proposed biomarkers (SAA, NP) and ratios of CRP/NP and SAA/NP were not significantly better. Nevertheless, most biomarkers had a slightly better accuracy than the physician diagnosis following the usual diagnostic process, i.e. using clinical symptoms and signs and CXR (AUROC 0.55). The best AUROC was 0.64 for CRP.

Adding a biomarker dichotomized at the best predicted cut-off to a score based on clinical variables (cough, fever and tachypnea) resulted in a higher accuracy. Adding CRP increased AUROC from 0.63 to 0.68 for example. However, the AUROC remains disappointingly low.

Pneumonia is a highly heterogeneous disease, which may explain why the diagnostic approach based on semiology and CXR is frequently inaccurate, particularly in the elderly [1315]. Inclusion of biomarkers in the diagnostic pathway has been advocated to enhance its accuracy. In a large study conducted in the primary care setting by van Vugt et al., CRP at a cut-off of 30 mg.L-1 modestly improved diagnostic classification, a finding comparable to our results [16]. Minaard et al. confirmed in an individual patient data meta-analysis that adding CRP to clinical prediction models improved reclassification of pneumonia in 15% of the patients [17]. Of note, the reference diagnosis in these studies used CXR as the diagnostic imaging modality, which has been shown to convey a substantial risk of misclassification [1, 4, 5].

A reference diagnosis incorporating the results of CT-scan in all patients was used to assess the accuracy of CRP and PCT in a prospective study of 200 patients (median age 64 years) presenting at the emergency room with suspected pneumonia [18]. AUROCs of CRP and PCT for the diagnosis of CAP were 0.79 and 0.66, respectively. In our study using a similar reference diagnosis, we found lower AUROCs for CRP (0.64) and PCT (0.59). This discrepancy could stem from different included populations, our patients being 20 years older. Few clinical trials have assessed biomarkers in an elderly population, because including such patients is challenging [19]. Stucker et al. showed that higher CRP, but not PCT, was associated with an acute infection in a prospective cohort of patients over 75 years admitted to a geriatric hospital [8]. In a retrospective study including elderly patients (median age 81 years) hospitalized for an acute respiratory infection, AUROCs for the diagnosis of pneumonia were 0.76 for CRP and 0.54 for PCT [20].

The best cut-off for CRP in our study was 109.4 mg.L-1 In comparison, the optimal cut-off for CRP was 50 mg.L-1 in the aforementioned study by Le Bel et al. (median age: 64 years), and 30 mg.L-1 in the study by van Vugt et al. (median age: 50 years) [16], but 61 mg. L-1 in a cohort of multimorbid elderly patients hospitalized for respiratory symptoms [20]. This variation in the optimal threshold is probably due to a higher background CRP in elderly patients with multiple comorbidities [21].

In our study as in most previous reports, CRP outperformed PCT for the diagnosis of pneumonia. This is not surprising, as the proposed role of PCT in respiratory infections is not to diagnose pneumonia but to identify patients that can be managed safely without antibiotics [22]. Procalcitonin in patients admitted to an acute geriatric ward did not discriminate patients with infection [8], and had limited clinical usefulness to diagnose invasive bacterial infections [7]. Chronic low-grade inflammation and lower eGFR might result in elevated baseline levels of PCT in elderly patients [23].

SAA is an acute-phase protein mostly synthesized by the liver, with a significantly shorter half-life than CRP [24]. In the pediatric setting, SAA predicted the presence of ventilator-acquired pneumonia with a sensitivity of 100% and a specificity of 93% [25]. Azurmendi et al. showed that SAA was elevated in patients at risk to develop post-stroke infections [26]. Nevertheless it had poor accuracy in our study, with an AUROC of 0.60, as well as SAA/NP with an AUROC 0.61.

NP is a marker of cell-mediated immunity, produced by monocytes and macrophages upon stimulation with interferon-gamma [27]. Pizzini et al. found that CRP/NP could discriminate pneumonia from acute exacerbation of COPD [11]. In our study, CRP/NP was not better than CRP alone.

Biomarkers levels vary according to immune status, the nature of the pathogen, the extension of the infection, and timing of the measurement relative to the beginning of the infection [28]. Smoking is also associated with alterations in the level of inflammatory markers. In our cohort, smokers were overrepresented in patients with pneumonia. [29] All these confounding factors may explain why the quest for a biomarker to diagnose pneumonia remains unsuccessful. In elderly patients, frequently present cardiovascular, respiratory, oncologic, and neurodegenerative diseases may further confound the relation between a biomarker and an acute infectious disease. Moreover, elderly patients frequently present with a chronic, low-grade inflammation of undetermined origin, called inflammaging [30]. To surpass these limitations, currently proposed strategies use simultaneous dosing of multiple viral- and bacterial-induced host proteins [31]. Other strategies combine biological, microbiological and radiological data into scores or decision rules [6, 32]. Another approach could be the sequential use of two biomarkers, the first with a high sensitivity and the second with a high specificity.

Our study has several strengths. It was conducted in a consecutive cohort of 200 elderly multimorbid patients representative of real life practice. We used a robust reference standard based on assessment of all data by a panel of experts and including thoracic CT scan and comprehensive microbiological testing in all patients. Our study has also limitations. First, the generalizability of the results is limited because it was conducted in a single hospital. Second, the expert panel was blinded to SAA and NP results, but not to CRP and PCT. This might have artificially inflated the accuracy of the latter. Third, we could not assess precisely the beginning of symptoms, information difficult to obtain in elderly patients with frequent cognitive impairment and delirium. Fourth, we could not compute the net reclassification improvement by each biomarker added to the usual diagnostic process.

In conclusion, the diagnosis of pneumonia in the elderly is often uncertain, and neither traditional nor newly proposed biomarkers had sufficient accuracy to be useful in this diagnosis. Further research should focus on scores or decision rules combining clinical, biological and radiological data. Simultaneous use of several biomarkers reflecting different aspects of the complex pathophysiology of pneumonia should also be tested. Finally, future studies should assess the net reclassification improvement by any new biomarker as compared to the usual diagnostic process.

Supporting information

S1 File

(XLSX)

Acknowledgments

We thank the patients and their families for their participation in this study. We also thank all members of PneumOldCT study group, clinicians, radiology technicians, research nurses, the case managers who helped us enrol our participants as well as the Clinical Research Center of Hôpitaux Universitaires de Genève (HUG). We acknowledge the contribution of the ESCMID Study Group for Infections in the Elderly (ESGIE, www.escmid.org/esgie).

Complete membership of the PneumOldCT study group:

The leader of the group is Dr Virginie Prendki (principal investigator), virginie.prendki@hcuge.ch.

Other members: (in alphabetical order):

T Agoritsas, S Carballo, P Darbellay Farhoumand, C Marti, JL Reny, S Rosset-Zufferey, Jacques Serratrice, V. Soulier, J Stirnemann (co-investigator): Division of Internal Medicine, Department of Internal Medicine Specialties, Geneva University Hospitals, Switzerland

C. Combescure: Clinical Research Center, Geneva University and Hospitals Geneva University, Switzerland

N Garin: Department of General Internal Medicine, Riviera Chablais Hospitals, Switzerland

F Herrmann, V Lachat, MP Meynet, X Roux, C Serratrice, Department of Rehabilitation and Geriatrics, Geneva University Hospitals, Switzerland

X Montet, M Scheffler, Department of Radiology, Geneva University Hospitals and University of Geneva, Switzerland

B Huttner, L Kaiser. Division of Infectious Diseases, Department of Internal Medicine Specialties, Medical Faculty, Geneva University and Hospitals Geneva University, Switzerland

JP Janssens, Division of Pulmonology, Department of Internal Medicine Specialties, Geneva University Hospitals and University of Geneva, Switzerland

Sponsor: HUG

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

The PneumOldCT study was supported by grants from the Geneva University Hospitals (HUG) (Research & Development Grant, Medical Directorate, HUG), the Department of Internal Medicine of the University Hospital and the Faculty of Medicine of Geneva and the Ligue Pulmonaire Genevoise, a non-profit association involved in the care of patients with respiratory diseases.

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Decision Letter 0

Muhammad Adrish

1 Jul 2020

PONE-D-20-15597

Accuracy of C-reactive protein, procalcitonin, serum amyloid A and neopterin for low-dose CT-scan confirmed pneumonia in elderly patients: a prospective cohort study

PLOS ONE

Dear Dr. Prendki,

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2. In your Methods section, please provide additional details regarding the sample size calculation employed to justify the number of patients included in this study.

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Reviewer #2: Yes

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Reviewer #1: This study used a sample of consecutive patients (65+) to assess the accuracy of index test in diagnosing pneumonia. The research question is clearly stated. The study design and statistical methods used are appropriate. I recommend publishing this study if the following comments are addressed.

1. The major concern I have is the classification criteria adopted for the usual and reference diagnosis. In both measures, the probability of pneumonia is measured using a three-level Likert scale – low, intermediate, and high. Intermediate and high are then combined to indicate “positive”. The definition of intermediate seems rather vague. It is not clear what “intermediate” actually mean as doctors may have their own subjective interpretations. And since this is then used as the only “gold standard” to construct the ROC curves, the coding scheme may have substantial impacts on the final results. I suggest the authors to report the percentage of intermediate and run a set of sensitivity analysis – that is, whether the AUC values will increase if only “high” is treated as positive case. If they indeed increase considerably, the discussions and conclusions should be revised accordingly. The coding effect needs to be discussed.

2. Although data on a range of clinical characteristics are collected, they are not used in combination with the index tests to improve diagnosis. I think the univariate analysis for sure can provide some important information. But given that the final diagnosis is based on multiple indicators, it is of interest to see whether adding the index tests information in addition to existing criteria can improve the accuracy.

3. Minor comments:

a. In Page 5 Line 7, severity scores of what?

b. In Page 4 Line 15, it is not clear what it means by after completion of the study.

c. Please provide reference for the sample size calculation of the original study. Or add 1-2 sentence to elaborate.

d. Please use the official citation of R:

To cite R in publications use:

R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

e. I think the flow-chart is not necessary as the procedure is quite simple

f. For table 1, please add a column to list the valid sample size for each variable.

Reviewer #2: Summary: This paper examined the ability of serum CRP, PCT, SAA and NP, added to the usual panel of indicators, to improve the diagnostic accuracy of pneumonia in patients over 65 years of age. This is a prospective observational cohort analysis. Of the 899 patients who were screened for inclusion, 200 were eligible based on the presence of one respiratory symptom and one symptom or laboratory value suggestive of infection and a working diagnosis of pneumonia. An expert panel used all available clinical, laboratory and radiographic (all patients had CXR and LDCT) and classified pneumonia as present on 133 patients and absent in 67. A pathogen was identified in 41.4% of patients. The 30-day mortality was 7%. Previous studies suggested CRP and PCT as useful biomarkers for pneumonia in non-elderly population and SAA and NP were more newly suggested but less well studied biomarkers for pneumonia. None were useful in this study to improve diagnosis of pneumonia.

MAJOR CRITICISM: This paper lacks a clearly stated hypothesis. This can be addressed easily in the Introduction using “hypothesized” in place of ‘aimed.” The rationale for examining these biomarkers is presented but could be more concise. These data are well presented and this population is understudied so the results are worthy of publication. The reliance on blood markers to diagnose a process that begins at the lung alveolar surface continues to leave investigators shorthanded. Nonetheless, the authors made a valiant effort and the negative result calls for examination of newer and different biomarkers. Perhaps the authors could comment on the fact that there were more smokers in the pneumonia group and if this could have confounded baseline measures of these biomarkers.

MINOR: English usage could be improved at a few sides in the manuscript.

Example Page 6 line 29: consider “…expert panel classified pneumonia as present in 133 patients and absent in 67….” In place of current sentence.

P5 line 25-6: Consider removal of masculine pronoun and just say “The diagnosis of pneumonia was considered positive if the rated probability was “intermediate” or “high.” Pneumonia was considered negative if it was “low.”

**********

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Reviewer #1: No

Reviewer #2: No

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PLoS One. 2020 Sep 30;15(9):e0239606. doi: 10.1371/journal.pone.0239606.r002

Author response to Decision Letter 0


19 Aug 2020

Dear Editor,

We thank you for the opportunity to submit a revised version of our manuscript. We also thank the reviewers for their thoughtful comments and questions that helped us clarify some points and improve the manuscript. Please, find below our point-by-point answer to the issues raised by the reviewers. Reviewers comments appear in italic and our answers follow in red plain text.

Sincerely yours,

Virginie Prendki on behalf of all authors

Point by point answer to reviewers comments:

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

Thank you for your help. We have proceeded to the modifications required by PLOS ONE’s style.

2. In your Methods section, please provide additional details regarding the sample size calculation employed to justify the number of patients included in this study.

In the paragraph « Data analysis », we explain that the sample size is based on the power calculation of the original study.

In a previous study [21], a CT scan modified the diagnostic classification of CAP in 59% of cases (95% CI, 53.2–64.0), with an upgraded probability of diagnosis in 19%. Demonstrating an improvement in the pneumonia detection rate by using CT would require 46 patients (p=0.05, power 90%). Considering a true incidence of pneumonia of 45% among patients hospitalised for pneumonia, according to the adjudication committee’s reference diagnosis, we calculated that at least 100 patients would be needed to allow the estimation of any changes in a diagnosis of pneumonia, with a 95% CI.

3. One of the noted authors is a group or consortium: PneumOldCT study group.

In addition to naming the author group, please list the individual authors and affiliations within this group in the acknowledgments section of your manuscript.

Please also indicate clearly a lead author for this group along with a contact email address.

We added the name and affiliations of the authors in the acknowledgments section and the name of the leader (Dr Virginie Prendki, virginie.prendki@hcuge.ch).

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This study used a sample of consecutive patients (65+) to assess the accuracy of index test in diagnosing pneumonia. The research question is clearly stated. The study design and statistical methods used are appropriate. I recommend publishing this study if the following comments are addressed.

1. The major concern I have is the classification criteria adopted for the usual and reference diagnosis. In both measures, the probability of pneumonia is measured using a three-level Likert scale – low, intermediate, and high. Intermediate and high are then combined to indicate “positive”. The definition of intermediate seems rather vague. It is not clear what “intermediate” actually mean as doctors may have their own subjective interpretations. And since this is then used as the only “gold standard” to construct the ROC curves, the coding scheme may have substantial impacts on the final results. I suggest the authors to report the percentage of intermediate and run a set of sensitivity analysis – that is, whether the AUC values will increase if only “high” is treated as positive case. If they indeed increase considerably, the discussions and conclusions should be revised accordingly. The coding effect needs to be discussed.

We thank the reviewer for this comment. Indeed, the diagnosis of pneumonia is sometimes uncertain, for example when no pathogen is identified and an alternative diagnosis explaining the clinical and radiological data is plausible (eg. Atelectasis, intersitial lung disease, etc)

However, the clinician is finally constrained to make a binary decision: to consider pneumonia as present or not, and to manage the patient accordingly.

As exposed in the Methods section, the assessment of the reference standard was made a posteriori by a panel of experts, using a Delphi method. To reflect the uncertainty surrounding the diagnosis in some patients, the final output was a classification on a 3-levels Likert scale: high, intermediate, or low probability of pneumonia. We then made the assumption that a clinician would often choose to consider a patient with an intermediate probability of disease as having pneumonia and treat him/ her accordingly, as the negative consequences of not treating a pneumonia (false negative) are often considered more severe than treating a patient without pneumonia (false positive). But we agree that this choice is somehow arbitrary.

As proposed, we report the number of patients on the 3-level Likert scale.

“Expert panel classified 99 patients (49.5%) as having high, 34 (17.0%) intermediate, and 67 (33.5%) low probability of disease. Hence, expert panel classified pneumonia as present in 133 patients and absent in 67.” (page 7, lines 14-16)

We made a sensitivity analysis using only the patients in the high probability category as positive for the reference standard. (page 6, lines 11-12)

The results are as follows:

AUROC (95% CI) Ref standard: high or intermediate probability Ref standard: high probability

CRP 0.64 (0.56-0.72) 0.63 (0.56-0.71)

PCT 0.59 (0.51-0.68) 0.61 (0.53-0.69)

SAA 0.60 (0.52-0.69) 0.61 (0.53-0.69)

NP 0.41 (0.32-0.49) 0.45 (0.37-0.54)

CRP/NP 0.63 (0.55-0.71) 0.62 (0.54-0.70)

SAA/ NP 0.61 (0.53-0.70 0.62 (0.54-0.70)

We felt that the AUROC changes observed using the two definitions were not high enough to justify a full report of these results. We added the following sentence in the result section (page 10, lines 15-17)

„The AUROC of the biomarkers using the alternative reference diagnosis definition (considering only the patients with a high probability of disease as positive) were similar and are not reported.“

2. Although data on a range of clinical characteristics are collected, they are not used in combination with the index tests to improve diagnosis. I think the univariate analysis for sure can provide some important information. But given that the final diagnosis is based on multiple indicators, it is of interest to see whether adding the index tests information in addition to existing criteria can improve the accuracy.

Thank you again for helping us to improve the manuscript. Indeed, use of a biomarker should add information on top of commonly collected clinical variables.

Cough (p<0.01), tachypnea (p=0.12), fever (p=0.10), and falls (p=0.10) (as presenting signs or symptoms) were associated with pneumonia with a p value < 0.20. We dismissed falls as it is not widely described as a predictor of pneumonia, and built a score by adding one point for the presence of each of cough, tachypnea and fever. AUROC for the score was 0.63 (95% CI 0.55-0.71). We then dichotomized all biomarkers values at the best predicted cut-off, and computed the AUROC of a new score incorporating the clinical characteristics and each biomarker separately. The results are as follows:

AUROC clinical score (95% CI) AUROC clinical score + biomarker (95% CI)

CRP (cut-off: 110 mg/L) 0.63 (0.55-0.71) 0.68 (0.60-0.76)

CRP / neopterin (cut-off 15) 0.63 (0.55-0.71) 0.67 (0.59-0.75)

SAA / neopterin (cut-off 37.4) 0.63 (0.55-0.71) 0.66 (0.58-0.74)

SAA (cut-off 282.0 µg/L) 0.63 (0.55-0.71) 0.65 (0.56-0.73)

PCT (cut-off 1.1 µg/L) 0.63 (0.55-0.71) 0.65 (0.57-0.73)

Hence, the addition of each biomarker to clinical variables modestly enhanced the discrimination, a finding already described by van Vugt et al. (BMJ 2013)

However, the absolute value of the AUROC remains low, and it is unlikely that it would alter significantly the diagnostic process for pneumonia.

To address this point, we added the following paragraph in the methods, results, and discussion sections, and a table in the results section:

„To assess if use of any tested biomarker adds information on top of routinely collected clinical variables, we built a clinical score predicting the presence of pneumonia, using clinical symptoms and signs present at admission and associated with the diagnosis in univariate analysis (p< 0.20) and obtained the AUROC of the score with 95% CI. We then added separately each tested biomarker, dichotomized at the best predicted cut-off, to the clinical score, and computed AUROC of the new score“

(page 6, lines 22-27)

Cough, tachypnea, fever, and falls (as presenting signs or symptoms) were associated with pneumonia with a p value < 0.20. We dismissed falls as this is not widely described as a predictor of pneumonia, and built a clinical score by adding one point for the presence of each of cough, tachypnea and fever. AUROC of the clinical score, and AUROCs of scores obtained by adding one point for each dichotomized biomarker to the clinical score are compared in Table 3

Table 3 AUROCS of a clinical score with and without biomarkers for the prediction of pneumonia

AUROC clinical score (95% CI) AUROC clinical score + biomarker (95% CI)

CRP (cut-off: 110 mg/L) 0.63 (0.55-0.71) 0.68 (0.60-0.76)

CRP / neopterin (cut-off 15) 0.63 (0.55-0.71) 0.67 (0.59-0.75)

SAA / neopterin (cut-off 37.4) 0.63 (0.55-0.71) 0.66 (0.58-0.74)

SAA (cut-off 282.0 µg/L) 0.63 (0.55-0.71) 0.65 (0.56-0.73)

PCT (cut-off 1.1 µg/L) 0.63 (0.55-0.71) 0.65 (0.57-0.73)

(Page 11, lines 8-15)

„Adding a biomarker dichotomized at the best predicted cut-off to a score based on clinical variables (cough, fever and tachypnea) resulted in a higher accuracy. Adding CRP increased AUROC from 0.63 to 0.68 for example. However, the AUROC remains disappointingly low“

(Page 12, lines 9-11)

3. Minor comments:

a. In Page 5 Line 7, severity scores of what?

We added «severity scores of pneumonia”

b. In Page 4 Line 15, it is not clear what it means by after completion of the study.

We modified the sentence for “SAA and NP were measured retrospectively”

c. Please provide reference for the sample size calculation of the original study. Or add 1-2 sentence to elaborate.

This had been added in the paragraph Data Analysis Sample size is based on the power calculation of the original study (reference 5) (page 6 line 15)

d. Please use the official citation of R:

To cite R in publications use:

R Core Team (2020). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.

We have made the change and used the official citation of R (page 7 line 2)

e. I think the flow-chart is not necessary as the procedure is quite simple.

Thank you for this comment. We removed it as proposed.

f. For table 1, please add a column to list the valid sample size for each variable.

This has been done in Table 1.

Reviewer #2: Summary: This paper examined the ability of serum CRP, PCT, SAA and NP, added to the usual panel of indicators, to improve the diagnostic accuracy of pneumonia in patients over 65 years of age. This is a prospective observational cohort analysis. Of the 899 patients who were screened for inclusion, 200 were eligible based on the presence of one respiratory symptom and one symptom or laboratory value suggestive of infection and a working diagnosis of pneumonia. An expert panel used all available clinical, laboratory and radiographic (all patients had CXR and LDCT) and classified pneumonia as present on 133 patients and absent in 67. A pathogen was identified in 41.4% of patients. The 30-day mortality was 7%. Previous studies suggested CRP and PCT as useful biomarkers for pneumonia in non-elderly population and SAA and NP were more newly suggested but less well studied biomarkers for pneumonia. None were useful in this study to improve diagnosis of pneumonia.

MAJOR CRITICISM: This paper lacks a clearly stated hypothesis. This can be addressed easily in the Introduction using “hypothesized” in place of ‘aimed.”

Thank you. We made the proposed change. The end of the Introduction section now reads as follows:

“We hypothesized that biomarkers would improve the clinical and radiological diagnosis of pneumonia, and assessed the accuracy of CRP…” (Page 4, lines 17-18)

The rationale for examining these biomarkers is presented but could be more concise. These data are well presented and this population is understudied so the results are worthy of publication. The reliance on blood markers to diagnose a process that begins at the lung alveolar surface continues to leave investigators shorthanded. Nonetheless, the authors made a valiant effort and the negative result calls for examination of newer and different biomarkers. Perhaps the authors could comment on the fact that there were more smokers in the pneumonia group and if this could have confounded baseline measures of these biomarkers.

We thank the reviewer for his valuable comments.

We commented the fact that there were twice as much smokers in the pneumonia group and added a sentence in the text (page 7 line 10) and in the discussion with a new reference as follows: « Smoking is also associated with alterations in the level of inflammatory markers. In our cohort, smokers were overrepresented in patients with pneumonia.” Ref Shiels et al 2014“

MINOR: English usage could be improved at a few sides in the manuscript.

Example Page 6 line 29: consider “…expert panel classified pneumonia as present in 133 patients and absent in 67….” In place of current sentence.

P5 line 25-6: Consider removal of masculine pronoun and just say “The diagnosis of pneumonia was considered positive if the rated probability was “intermediate” or “high.” Pneumonia was considered negative if it was “low.”

We thank again the reviewer for his help in improving the manuscript. We made the change as asked. We thoroughly reviewed the whole manuscript and changed clumsy formulations at a few sides, without affecting the content.

Attachment

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Decision Letter 1

Muhammad Adrish

10 Sep 2020

Accuracy of C-reactive protein, procalcitonin, serum amyloid A and neopterin for low-dose CT-scan confirmed pneumonia in elderly patients: a prospective cohort study

PONE-D-20-15597R1

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Acceptance letter

Muhammad Adrish

18 Sep 2020

PONE-D-20-15597R1

Accuracy of C-reactive protein, procalcitonin, serum amyloid A and neopterin for low-dose CT-scan confirmed pneumonia in elderly patients: a prospective cohort study

Dear Dr. Prendki:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

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