Abstract
Enhancement of autophagy serves as a promising therapeutic strategy for cancer, including acute myeloid leukemia (AML). Casein kinase 1α (CK1α), encoded by CSNK1A1, regulates Wnt/β-catenin, p53 and other key signaling pathways, and is critically involved in tumor progression. However, the relationship and mechanism of CK1α with autophagy in AML still remain unclear. In the present study, it was found that AML patients had higher expression of CSNK1A1 mRNA than healthy donors. Furthermore, we analyzed 163 cases of AML patients in the LAML database of TCGA and found that AML patients with high CSNK1A1 had shorter overall survival than those with low or medium CSNK1A1 expression. Furthermore, we demonstrated that CK1α was a negative regulator of autophagy and apoptosis. Pharmacologic inhibition of CK1α using D4476 or CK1α knockdown via lentivirus-mediated shRNA suppressed proliferation and the clone formation by enhancing autophagic flux and apoptosis in AML cell lines as well as in patient blast cells. Intriguingly, D4476-induced cell death was aggravated in combination with an autophagy inhibitor, Spautin-1, suggesting that autophagy may be a pro-survival signaling. CK1α interacted with murine double minute 2 (MDM2) and p53, and CK1α inhibitor D4476 significantly upregulated p53 and phosphorylated 5′ AMP-activated protein kinase (AMPK), and substantially inhibited the phosphorylation of mammalian target of rapamycin (mTOR). Our findings indicate that CK1α promotes AML by suppressing p53 downstream of MDM2-mediated autophagy and apoptosis, suggesting that targeting CK1α provides a therapeutic opportunity to treat AML.
Keywords: casein kinase 1α, acute myeloid leukemia, autophagy, apoptosis, p53
Introduction
Acute myeloid leukemia (AML) is a genetically heterogeneous disease characterized by infiltration of the bone marrow (BM), blood, and other tissues with proliferative, clonal, abnormally differentiated cells of the hematopoietic origin (1). Although the overall survival rate of AML has increased significantly, relapse after remission is still the most important issue for AML treatment. Mounting evidence shows that leukemia stem cells (LSCs) can initiate tumor formation and lead to chemotherapy failure or resistance and disease relapse (2,3). LSCs and leukemic blasts ensure their survival by utilizing autophagy to respond to the specific metabolic demands during rapid cell proliferation and to counteract chemotherapeutic stress (4).
Autophagy is an evolutionarily conserved process during which intracellular components are catabolized to sustain energy metabolism homeostasis and to safeguard cells against stress (5). There are many reports concerning the function of autophagy in AML. Usually, we consider autophagy as a protective mechanism in AML. Larrue et al (6) reported that bortezomib could induce FLT3-ITD degradation through autophagy which resulted in the death of AML cells. Jin et al (7) believed that granulocytic AML differentiation relies on noncanonical autophagy pathways and that restoring autophagic activity may be beneficial in differentiation therapies. Several studies have shown that low level of basal autophagy gene expression such as ATG5, ATG7 and LC3 (7,8), and reduced autophagic flux occur in patient-derived AML blasts, and the loss of core autophagy genes results in leukemia initiation and progression in mouse models (9). Pharmacological or genetic inhibition of autophagy leads to impaired leukemic cell viability and increased sensitivity to standard chemotherapy (6,7,10,11).
β-catenin has been demonstrated as a critical regulator of the self-renewal and therapeutic target for various cancer stem cells including leukemia-initiating cells (LICs) (12,13). Casein kinase 1α (CK1α), encoded by CSNK1A1, is a classical negative regulator for the Wnt/β-catenin signaling pathway (14). In addition to Wnt/β-catenin signaling, CK1α also regulates p53, GLI transcription factors and other important signaling pathways (15–17). CK1α has been reported to be implicated in apoptosis, survival, senescence and other cellular physiological processes, thus regulating the occurrence and development of multiple tumors (17,18). Recently, CK1α was reported to act as a key negative regulator of oncogenic RAS-induced autophagy, suggesting that targeting CK1α-regulated autophagy provides a promising therapeutic opportunity to treat oncogenic RAS-driven cancers (19). In contrast to solid tumors, the role of CK1α in regulating autophagy in hematologic malignancies is less well defined.
In the present study, we found that CK1α was upregulated and correlated with prognosis in AML. Furthermore, CK1α was found to inhibit p53 downstream of murine double minute 2 (MDM2)-mediated autophagy and apoptosis. Pharmacological or genetic inhibition of CK1α suppressed the proliferation and increased the autophagy flux as well as apoptosis in multiple AML cell lines and patient blast cells. Spautin-1, a specific autophagy inhibitor (20), aggravated the cell death induced by D4476, a classical inhibitor of CK1α (21), suggesting that CK1α inhibition-mediated autophagy might be a pro-survival signaling in AML. Additionally, D4476 upregulated p53 and phosphorylated 5′ AMP-activated protein kinase (AMPK), and reduced the phosphorylation of mammalian target of rapamycin (mTOR).
Materials and methods
AML cell lines and primary cell separation
Human AML cell lines HL-60, HEL and THP-1 were purchased from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China), and cultured in RPMI-1640 medium supplemented with 7% fetal bovine serum (FBS; both from Gibco; Thermo Fisher Scientific, Inc.) at 37°C in 5% CO2. A total of 61 newly diagnosed AML patients and 6 AML patients in complete remission (CR) in the First Affiliated Hospital of Wenzhou Medical University from March to December 2018 according to the FAB classification system were enrolled in this study (Table SI). Eleven age-matched healthy donors were enrolled as controls. Bone marrow mononuclear cells (BMMNCs) were isolated using Ficoll-Hypaque (Haoyang Institute of Biotechnology, China). In addition, BMMNCs of the newly diagnosed AML patients were not used for the following experiments until the percentage of CD45dimSSCdim cells was more than 70% using flow cytometric analyses. All primary blast cells were cultured in RPMI-1640 medium supplemented with 20% FBS at 37°C in 5% CO2.
This study was approved by the Institutional Review Board of the First Affiliated Hospital of Wenzhou Medical University, and informed consent was obtained from all participants in accordance with the Declaration of Helsinki protocol.
TCGA data analysis
The relationship of CSNK1A1 expression and the prognosis in patients with AML was analyzed using UALCAN (22), an interactive web-portal to perform to in-depth analyses of TCGA gene expression data. UALCAN is publicly available at http://ualcan.path.uab.edu.
Quantitative real-time PCR
The total RNA was extracted from cells using Trizol reagent (Life Technologies, USA) and reverse transcribed into cDNA with following procedure: 42°C for 30 min, 70°C for 15 min, and then cDNA was amplified and quantified according to the procedure: 95°C for 30 sec, followed by 40 cycles at 95°C for 5 sec and at 60°C for 34 sec by ABI Prism 7500 using SYBR Green PCR Master Mix (Takara) with primer pairs. All results were normalized against GAPDH, RQ=2−ΔΔCq (23). Primer sequences are listed in Table SII.
Lentiviral-mediated RNA interference
Four separate short hairpin RNA (shRNA) constructs targeting CSNK1A1 (shCSNK1A1-A, shCSNK1A1-B, shCSNK1A1-C, and shCSNK1A1-D) and one control shRNA construct targeting lactose gene were synthesized (Hanyin Biotechnology Co., Ltd.). The sequences of the target sequences for shRNAs and synthetic oligo information are shown in Table SIII. Each sequence pair was cloned into the LV3 shuttle plasmid with a RSV and CMV and H1 three promoter-driven GFP expression cassette, respectively. Each lentiviral expression plasmid and three corresponding packaging plasmids were co-transfected into 293T cells with RNAi-Mate reagent (GenePharma), respectively. Supernatants were collected 72 h after transfection, and the final virus titer in the supernatant was 1.3×109 TU/ml for each lentivirus. AML cells were infected with the lentivirus in the presence of 10 µg/ml polybrene, and 72 h after infection, 3 µg/ml puromycin was used to screen those successfully transfected cells. The efficiency of gene silencing was examined using RT-PCR and western blot analysis.
Western blot analysis and co-immunoprecipitation (Co-IP)
The cells were harvested, and lysed with RIPA lysis buffer (Beyotime) containing PMSF and protease inhibitor cocktail (Beyotime). The protein was boiled and subjected to western blot analysis with different antibodies, including p53 [Cell Signaling Technology, Inc. (CST), #2527], SQSTM1/p62 (CST, #8025), p-AMPK (CST, #4184), AMPK (CST, #2532), mTOR (CST, #4517), p-mTOR (CST, #5536), PARP (CST, #9542), LC3-I/II (CST, #4108), GAPDH (CST, #2118), CK1α (Abcam, ab206652), ATG-7 (CST, #2631), at 1/1,000 dilution for incubation overnight at 4°C, respectively. For Co-IP, the cells were lysed with RIPA lysis buffer containing PMSF on ice for 0.5 h. Protein concentration was determined using a BCA protein assay kit. Five hundred micrograms of protein per sample was used and coated with 20 µl protein A/G-agarose beads and 1 µg mouse-control IgG with protein to eliminate non-specific proteins for 1 h, and then was centrifugated at 2,400 × g for 5 min. The supernatants were incubated with beads coated with 10 µg/ml mouse-source anti-MDM2 or 1 µg control IgG overnight at 4°C. Beads were washed three times with lysis buffer and boiled for 5 min. The bead-protein mixture was subjected to western blotting with antibodies against mouse-source anti-MDM2 (#AF208, Affinity, at 1/1,000 dilution), rabbit-source anti-p53 (#2527, CST, at 1/1,000 dilution), anti-CK1α (ab206652, Abcam, at 1/1,000 dilution), respectively. Optical densities of the bands were scanned and analyzed with FluorChem E and AlphaView SA software (Version: 3.4.0.0) (both from ProteinSimple).
Flow cytometry assay and cell viability assay
Apoptosis assay was measured using the Annexin V-FITC/PI apoptosis kit and Annexin V-APC/7-AAD apoptosis kit (MultiSciences Biotech Co., Ltd.) as described previously (24). The cell viability assay was measured using the Cell Counting Kit-8 (CCK-8, Dojindo, Japan) according to the manufacturer's protocol.
Colony formation assay
The cells were cultured in methylcellulose medium (MethoCult™ H4034, Stemcell Technologies) according to the manufacturer's protocol. Visible colonies, defined to consist of at least 60 cells were counted. The colonies were photographed by microscope (BX51, Olympus, Japan) and the total cells were counted after rinsing with PBS.
Transmission electron microscope (TEM)
Cell masses were fixed with 2.5% glutaraldehyde and were cut into 1×1×1 mm pieces. Then, the cell masses were cleaned by 0.1 M phosphoric acid bleach, dehydrated by 50, 70, 90 and 100% ethanol and 100% epoxy for 15 min, embedded with epoxypropane + buried solution (2:1) for 2 h, epoxypropane + burden (1:2) for 3 h, pure buried liquid overnight and pure buried liquid for 4 h, sliced by slim slicer (70 nm), and stained by 3% uranium acetate-lead citrate. Finally, the mitochondrial membrane and typical autophagic vacuoles of each cell sample were observed under ×20,000 magnification using a transmission electron microscope (Jeol JEM 1230, Japan).
Statistical analysis
Two-tailed unpaired Student's t-tests with 95% confidence interval (CI) were used to analyze the data involving direct comparison of an experimental group with a control group. One-way ANOVA tests with Dunnett's method for multiple comparisons with 95% CI were used to analyze the data involving 2 or more test groups and a control group. One-way ANOVA with Tukey test was used to perform multiple comparisons for up to 3 groups. P-value <0.05 was considered to indicate a statistically significant difference. All experiments were performed with three replicates, unless stated.
Results
CK1α is overexpressed and its inhibition impairs the proliferation and the colony formation in AML cells
Mounting evidence indicates that β-catenin is overexpressed and promotes disease recurrence contributing to a poor prognosis in AML (25), which motivated us to investigate whether CK1α, a negative regulator of β-catenin, also has a similar role. CK1α mRNA was significantly higher in BMMNCs from the newly diagnosed AML patients than those from healthy donors or AML patients who achieved CR (Fig. 1A). There was no difference in the level of CK1α mRNA among the different types of FAB (Fig. 1B). Furthermore, the patients with a high level of CK1α mRNA showed a poorer outcome than those with a low or medium level of CK1α mRNA (P=0.034, Fig. 1C). These findings suggested that CK1α may be overexpressed and confer a poor prognosis in AML. All patient information is listed in Table SI.
To investigate the role of CK1α in AML cells, we decreased CK1α using pharmacological or genetic inhibition. We found that D4476 significantly reduced the cell viability of three AML cell lines HL-60, HEL and THP-1 in a time- and dose-dependent manner (Fig. 2A), while only a dose-dependent manner was shown after treatment with D4476 lower than 10 µM in patient blast cells. We further investigated whether D4476 affects the colony formation ability of AML cells, and found that D4476 at 40 µM dramatically impaired the colony formation, as indicated with colony number and total cell number, in both HL-60 and HEL cells (Fig. 2B). Notably, there were many small cell clusters, but did not reach the standard of a colony in the D4476 treatment group in these two cell lines (Fig. 2B). Meanwhile, similar results were also observed in these two AML cell lines with genetic inhibition of CK1α using lentiviral-mediated shRNA (Figs. 2C and S1). Importantly, we found that the colony size was decreased in both the D4476 treatment group and the shCSNK1A1 group (Fig. 2B and C), suggesting that pharmacological or genetic inhibition of CK1α affects the colony formation mainly through decreasing the size of the colony in AML cells.
CK1α inhibition induces apoptosis but does not influence cell cycle in the AML cells
We found that D4476 dramatically induced apoptosis in a dose-dependent manner in three AML cell lines tested as well as patient blast cells (Fig. 3A). As expected, D4476 treatment promoted the cleavage of PARP, a classical marker of apoptosis, and decreased the expression of survivin, a negative marker protein of apoptosis, in HL-60, THP-1 and HEL cells as well as in patient blast cells (Fig. 3A). Similarly, the genetic inhibition of CK1α also induced a moderate apoptosis in the three AML cell lines HL-60, THP-1 and HEL (Fig. 3B). Furthermore, combination with cytarabine (Ara-c) and D4476 or gene silencing of CK1α had a synergistic effect on the induction of apoptosis in THP-1 and HEL cells (Fig. S2). In addition, we found that pharmacological or genetic inhibition of CK1α had almost no effect on cell cycle distribution of HL-60 or HEL cells (Fig. S3).
CK1α inhibition promotes autophagy in AML cells
Autophagy is a cellular process activated in response to various forms of stresses such as nutrient deprivation, hypoxia and endoplasmic reticulum (ER) stress. Apoptosis triggered by ER stress is often accompanied by increased autophagy. Apoptosis induced by CK1α inhibition prompted us to investigate whether CK1α inhibition also activates autophagy. We used TEM to observe autophagosomes and found that pharmacological or genetic inhibition of CK1α promoted the autophagy flux of HL-60 and HEL cells with increased autophagosomes (Fig. 4A). We found that D4476 treatment upregulated the expression of ATG-7 and LC3-II in all three AML cell lines tested as well as patient blast cells (Fig. 4B), which further confirmed the occurrence of autophagy. SQSTM1/p62, a substrate of LC3-II, is usually reduced when autophagy occurs. However, we found that D4476 treatment concomitantly increased the levels of SQSTM1/p62 and LC3-II protein in HL-60 or HEL cells in a dose-dependent manner within 48 h (Fig. S4). It has been reported that in nutrient-rich conditions, β-catenin can inhibit autophagy and the generation of SQSTM1/p62 mRNA by regulating TCF4/LEF, but when autophagy occurs, β-catenin can be degraded by autophagy and p62 becomes derepressed and dramatically increased (26). We therefore determined the mRNA expression of SQSTM1/p62 and found that D4476 treatment significantly increased the level of SQSTM1/p62 mRNA, suggesting that enhanced autophagy reduced the inhibition of β-catenin on p62, resulting in greater p62 generation than degradation, ultimately leading to the accumulation of p62 (Fig. 4C). Furthermore, combination with Ara-c and D4476 resulted in the upregulation of autophagic flux in THP-1 and HEL cells (Fig. S2A).
CK1α inhibition-mediated autophagy exerts protective effects on AML cells
Once confirmed, autophagy and apoptosis occurring together in the D4476-treated AML cells, the underlying relationship aroused our curiosity. Firstly, we combined Spautin-1 with D4476 to unravel the veil of mystery. Spautin-1 aggravated the cell growth inhibition induced by D4476 on all three AML cell lines tested as well as in the patient blast cells (Fig. 5A). Furthermore, we determined the apoptosis when the autophagy was inhibited. Spautin-1 alone did not induce apoptosis in AML cells, and Spautin-1 potently aggravated D4476-induced apoptosis on HEL cells but merely moderately exacerbated D4476-induced apoptosis in HL-60 cells (Fig. 5B). These data suggested that D4476 combined with Spautin-1 exerted a synergistic antitumor effect on AML cells.
CK1α interacts with MDM2 and mediates autophagy by targeting p53/AMPK/mTOR signaling pathway in AML
A number of signaling pathways including PI3K/Akt/mTOR, p53/AMPK/mTOR, and MAPKs, are implicated in autophagic cell survival and cell death (27,28). We found that CK1α had a relation with MDM2 and p53 (Fig. 5C). It has been recognized that MDM2 is a negative regulator of p53 (29,30) and p53 regulates AMPK/mTOR signaling to activate autophagy (31). We found that CK1α inhibition by D4476 increased the expression of p53 and MDM2, promoted the phosphorylation of AMPK, and inhibited the phosphorylation of mTOR in a dose-dependent manner in HL-60 and HEL cells (Fig. 5D). Furthermore, we found that D4476 did not affect the level of MDM2 when CK1α was genetically inhibited in HEL cells (Fig. 5E), indicating that D4476 may influence MDM2 through CK1α. These data suggested that CK1α may regulate p53 through MDM2, and inhibit autophagy by the AMPK/mTOR signaling pathway downstream of p53.
Discussion
Casein kinase 1α (CK1α) is able to regulate several important signaling molecules in different types of tumors (32). Especially its ability to regulate the Wnt signaling, p53, and apoptosis induction makes it a potential target in tumor therapy (32,33). In the present study, we found that CK1α was overexpressed in newly diagnosed acute myeloid leukemia (AML) patient samples, which further confirmed the concept of overexpression of CK1α in AML based on its expression in multiple AML cell lines detected by gene chip (34). When AML patients achieve complete remission (CR), the level of CK1α was decreased. Then we analyzed the data of TCGA via UALCAN and found that AML patients with high expression of CK1α mRNA had poor prognosis compared with those with low or medium expression of CK1α mRNA. This finding was in accordance with the role of CK1α in colorectal cancer (35).
The relationship between autophagy and tumors is of current research interest. To the best of our knowledge, this is the first study to reveal the relationship of CK1α and autophagy in AML. Pharmacological or genetic inhibition of CK1α induced apoptosis and autophagy in AML cells, which were not completely consistent with other cancers, such as multiple myeloma (36). Autophagy is responsible for the degradation of p62 and p62 knockout cells possess higher basal levels of LC3-II, followed by an increase in autophagic function (37). However, in our present study, inhibition of CK1α induced autophagy and increased p62 mRNA and protein. When CK1α was inhibited by D4476, autophagy occurred and the inhibitory function via β-catenin regulating-TCF4 on p62 was attenuated, p62 became derepressed and dramatically increased [21]. We also found that inhibition of CK1α did not affect cell cycle progression in AML cells, inconsistent with the results of a previous study (32), suggesting that the role of CK1α on cell cycle progression is cell type-specific.
The relationship between autophagy and apoptosis is two-sided. In some situations, autophagy weakens the apoptotic effect and acts as a pro-survival role (38), but in other situations this is absolutely opposed (24). In the present study, pharmacological inhibition of CK1α by D4476 induced obvious apoptosis with increased cleavage of PARP and decreased survivin in a dose-dependent manner in AML cells. Furthermore, autophagy inhibitor Spautin-1 exacerbated D4476-mediated apoptosis, suggesting that CK1α inhibition-mediated autophagy may be a pro-survival element, and co-targeting CK1α and autophagy may confer a more effective anti-leukemia effect.
Murine double minute 2 (MDM2), a negative regulator of the tumor-suppressor p53, functions as an inhibitor of apoptosis in AML (39). CK1α plays a central role in mediating MDM2 control of p53 protein stability (40). Inhibition of CK1α has p53-dependent therapeutic efficacy in AML (32). The activation of p53 and the AMPK/mTOR signaling pathway (27) plays a critical role in regulating autophagy. In our present study, CK1α inhibitor D4476 upregulated the levels of MDM2 and p53 in AML cells, similarly with the results of melanoma cell line A375 as described previously (41). In normal conditions, CK1α promotes p53 degradation and inhibition by MDM2. Therefore, when CK1α was inhibited by D4476, the complex of CK1α and MDM2 was disrupted, which subsequently resulted in the upregulation of p53. It has been reported that p53 can bind the MDM2 P2 promoter and transcriptionally upregulate MDM2 expression (32). D4476 did not increase the level of MDM2 when CK1α was genetically inhibited in HEL cells, indicating that CK1α may influence p53 through MDM2.
In conclusion, our findings demonstrated that CK1α is overexpressed in AML patients and acts as a negative element in the prognosis of AML patients. CK1α inhibits p53 downstream of MDM2-mediated autophagy and apoptosis, and the targeting of CK1α and autophagy may offer a potential therapeutic opportunity to treat AML.
Supplementary Material
Acknowledgements
Not applicable.
Funding
This research was supported by the Zhejiang Provincial Natural Science Foundation of China (no. LY20H080005), and the Health Commission of Zhejiang Province (no. 2020KY179).
Availability of data and materials
The datasets used and/or analyzed during the present study are available from the corresponding author on reasonable request.
Authors' contributions
SZ and KY designed the research. WX, YG, ZH, RC, YH, and BX performed the experiments. WX, SJ, ZY, SZ and KY analyzed the data; and WX and SZ wrote the paper. All authors read and approved the manuscript and agree to be accountable for all aspects of the research in ensuring that the accuracy or integrity of any part of the work are appropriately investigated and resolved.
Ethics approval and consent to participate
This study was approved by the Institutional Review Board of the First Affiliated Hospital of Wenzhou Medical University (Wenzhou, China), and informed consent was obtained from all participants in accordance with the Declaration of Helsinki protocol.
Patient consent for publication
No applicable.
Competing interests
The authors declare that they have no competing interests.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The datasets used and/or analyzed during the present study are available from the corresponding author on reasonable request.