Griffithsin with A Broad-Spectrum Antiviral Activity by Binding Glycans in Viral Glycoprotein Exhibits Strong Synergistic Effect in Combination with A Pan-Coronavirus Fusion Inhibitor Targeting SARS-CoV-2 Spike S2 Subunit

Dear Editor,

The pandemic of coronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 has posed a significant threat to global public health and economy, thus calling for the rapid development of effective therapeutics and prophylactics. Repurposing existing medicines with clinical safety profiles offers a more rapid hope of combating COVID-19 pandemic than developing a new therapeutic. For example, remdesivir was originally developed to treat Ebola virus infection and its safety to humans has been confirmed in a phase I clinical trial (Grein et al. 2020). Therefore, it immediately went to clinical trials for in vivo efficacy in treatment of COVID-19 patients after its in vitro anti-SARS-CoV-2 activity was verified (Grein et al. 2020).

In this study, we tested the in vitro inhibitory activity of griffithsin (GRFT) against infection of pseudotyped and live SARS-CoV-2 infection, in order to repurpose the application of GRFT as a potential prophylactic or therapeutic to prevent or treat COVID-19. GRFT, a lectin isolated from the red alga Griffithsia sp, can recognize mannose with high affinity and has a broad-spectrum antiviral activity (Lusvarghi and Bewley 2016). GRFT is safe to human as demonstrated in the phase I clinical trial of GRFT as an anti-HIV microbicide for prevention of sexual transmission of HIV in healthy populations, in which the single-dose open-label design and the multiple-dose, randomized design have been performed with treatment duration of 14 days and 30 subjects enrolled (Lee 2019).

We first performed SARS-CoV-2 pseudovirus infection assay (Xia et al. 2020) to evaluate the activity of GRFT against SARS-CoV-2 in vitro. As shown in Fig. 1A, GRFT could significantly inhibit SARS-CoV-2 pseudovirus infection in a dose-dependent manner with the half maximal inhibitory concentration (IC₅₀) of 293 nmol/L. To further confirm this result, we then assessed its inhibitory activity against live SARS-CoV-2 infection with immunofluorescence and qRT-PCR assays. As shown in Fig. 1B and 1C, GRFT inhibited live SARS-CoV-2 infection in a dose-dependent manner with an IC₅₀ of 63 nmol/L, which is about 11-fold more potent than remdesivir with half-maximal effective concentration of 0.77 μmol/L against SARS-CoV-2 infection (Wang et al. 2020). Moreover, we found that GRFT potently inhibited SARS-CoV-2 S-mediated cell–cell fusion with an IC₅₀ of 323 nmol/L (Fig. 1D). To the best of our knowledge, these results, for the first time, confirm that GRFT is able to inhibit SARS-CoV-2 infection in vitro.

Fig. 1.

Inhibition of GRFT on SARS-CoV-2 infection and its mechanism of action. A–D GRFT inhibited infection of pseudotyped SARS-CoV-2 in HuH-7 cells measured by luciferase assay (A), and live SARS-CoV-2 (100 TCID₅₀) in Vero-E6 cells measured by immunofluorescence assay (B), and qRT-PCR (C), as well as SARS-CoV-2 S-mediated cell–cell fusion in HuH-7 cells measured by immunofluorescence assay. Scale bars, 200 μm. (D). E–H Identification of the target site of GRFT. Time-of-addition assay (E). GRFT was added to HuH-7 cells 0.5 h before, during (0 h) and 0.5, 1, 2, 4, 6, and 8 h after SARS-CoV-2 infection. After 12 h incubation, culture supernatant containing GRFT was replaced by fresh medium, followed by culture for 48 h. The inhibitory activity of GRFT on SARS-CoV-2 pseudovirus infection was assessed by luciferase assay. Time-of-removal assay (F). Binding of GRFT to S1 subunit (G) and RBD (H) as measured by ELISA. I–L The effect of GRFT on the binding of S1 subunit (I) and RBD (J) to ACE2 as measured by ELISA, and on the binding of S1 subunit (K) and RBD (L) to HEK-293 T/ACE2 cells as measured by immunofluorescence assay. Scale bars, 200 μm. M–O Effect of mannose on GRFT binding to S1 subunit (M) and RBD (N) measured by ELISA, and on GRFT-mediated inhibition of SARS-CoV-2 pseudovirus infection (O). P Inhibition of SARS-CoV-2 pseudovirus infection by GRFT alone, EK1 alone, and their combination. Statistical analysis was performed and calculated by GraphPad Prism 5.0. The CalcuSyn program (kindly provided by Dr. T. C. Chou) was used to calculate the synergistic effect of combinations using the median effect equation (Chou TC 2006). *P<0.05; **P<0.01; ***P<0.001; ****P<0.0001; ns, not significant. See supplementary materials for the details of all experiment

To enter the host target cell, SARS-CoV-2 utilizes spike (S) protein to recognize the receptor angiotensin-converting enzyme 2 (ACE2) and eventually fuses viral membrane with host cell membrane, which makes S protein a promising target for developing antiviral drugs (Walls et al. 2020). SARS-CoV-2 S protein is extensively modified by N-glycosylation with some glycosylation sites mainly occupied by oligomannose-type glycans, which can be recognized by mannose-binding proteins (Watanabe et al. 2020). It is found that mannose-binding proteins can inhibit infection of some glycosylated viruses by directly binding to the glycans displayed on viral envelop protein (Lusvarghi and Bewley 2016).

To illustrate the antiviral mechanism of GRFT, we performed a time-of-addition assay to determine which stage in the virus life cycle might be affected by GRFT. As demonstrated in Fig. 1E, GRFT exhibited more than 80% inhibition of SARS-CoV-2 pseudovirus infection when GRFT were added 0.5 h before, during (0 h) and 0.5 h after SARS-CoV-2 pseudovirus infection, while the inhibitory activity was decreased to 32% when GRFT was added 8 h after SARS-CoV-2 pseudovirus infection. Next, we carried out a cell-based wash-out assay to determine whether GRFT acted on viruses or host cells. As shown in Fig. 1F, no inhibitory effect was found when GRFT was removed by washing the cells before addition of SARS-CoV-2 pseudovirus, suggesting that GRFT acts on SARS-CoV-2, rather than cells, at the early stage of virus entry. Considering that S1 subunit of S protein, which contains the receptor-binding domain (RBD), is the key component responsible for binding to the host cell (Lan et al. 2020), we next performed enzyme-linked immunosorbent assay (ELISA) to determine whether GRFT could bind to S1 subunit or RBD. As shown in Fig. 1G and 1H, we found that GRFT could bind both S1 subunit and RBD.

We then investigated whether the binding of GRFT to S1 subunit or RBD could interfere with the interaction between S1 subunit or RBD and ACE2. As demonstrated in Fig. 1I and 1J, GRFT was unable to block the binding of S1 subunit or RBD to ACE2. To further confirm this result, we next assessed the effect of GRFT on the binding of S1 subunit or RBD to HEK-293T/ACE2 cells, a cell line stably expressing human ACE2, with HEK-293T cells as a control. As shown in Fig. 1K and 1L, S1 subunit and RBD could bind to HEK-293T/ACE2 cells, but not HEK-293T cells. Similarly, GRFT was unable to block the binding of S1 subunit and RBD to HEK-293T/ACE2 cells. These results suggest that although GRFT targets the SARS-CoV-2 S1 subunit and RBD, it has no effect on the binding of S1 subunit and RBD to ACE2.

Since previous studies have reported that the glycans are the target of GRFT, we then performed ELISA to determine whether the binding of GRFT to S1 subunit and RBD is carbohydrate dependent. As shown in Fig. 1M and 1N, the binding of GRFT to S1 subunit and RBD were blocked by mannose in a dose-dependent manner. Next, we performed additional experiments to assess the effect of mannose on GRFT-mediated inhibition of SARS-CoV-2 pseudovirus infection. As shown in Fig. 1O, the inhibitory activity of GRFT against SARS-CoV-2 pseudovirus was attenuated by mannose, suggesting that GRFT inhibits SARS-CoV-2 infection by targeting the glycosylation sites in S1 subunit, possibly RBD, of SARS-CoV-2 S protein.

We have recently identified a pan-coronavirus fusion inhibitor, EK1, which is effective against all the human coronaviruses tested, such as SARS-CoV-2 and SARS-CoV (Xia et al. 2019, 2020). Here we assessed whether the combination of the broad-spectrum antiviral agent GRFT targeting glycans with the pan-CoV fusion inhibitor EK1 targeting HR1 domain of coronavirus S2 subunit has synergistic effects against SARS-CoV-2 pseudovirus infection. As showed in Fig. 1P, combining GRFT and EK1 exhibited strong synergistic effect, with a combination index (CI) of 0.103, on SARS-CoV-2 pseudovirus infection with IC₅₀ values of 447 nmol/L and 24 nmol/L when GRFT was tested alone and in combination, respectively (~ 19-fold of potency increase), and 988 nmol/L and 49 nmol/L when EK1 was tested alone and in combination, respectively (~ 20-fold of potency increase). These results suggest that because GRFT and EK1 have different target sites and mechanisms of action, their combination exhibits potent synergistic effect against SARS-CoV-2 infection and has a great potential to be used as a cocktail therapy for preventing and treating COVID-19.

In sum, this study has shown that GRFT is highly effective in inhibiting the pseudotyped and live SARS-CoV-2 infection by binding to the glycosylation sites in the S1 subunit, possibly the RBD, of SARS-CoV-2 S protein, which is in consistent with the mechanism by which GRFT inhibits SARS-CoV infection (O'Keefe et al. 2010). Notably, combining GRFT with the pan-CoV fusion inhibitor EK1 exhibited excellent synergistic effect against SARS-CoV-2 pseudovirus infection. Given that GRFT can be easily manufactured in large quantities, it has a great potential to be further developed as a prophylactic or therapeutic, being used alone or in combination with EK1, in nasal spray or inhalation formulation to prevent or treat COVID-19, respectively. Moreover, considering the presence of SARS-CoV-2 in semen (Li et al. 2020) and possibility of sexual transmission of SARS-CoV-2, the existing GRFT microbicide gel may be a promising candidate for prevention of SARS-CoV-2 sextual transmission.

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The authors declare that they have no conflict of interest.

Animal and Human Rights Statement

This article does not contain any studies with human or animal subjects performed by any of the authors.