TABLE 4.
Loci of hit sequences found in noncoding regions in the four separate analyses of a rough-colony M. abscessus transposon-mutant librarya
| Hit sequence (noncoding regions) | Downstream locus | Upstream locus |
|---|---|---|
| TAACAGCGGCCTTAATAGGAAAATAG | MAB_1825c | MAB_1826 |
| GCCCGTGGTGTGTACACACCGCGGCT | MAB_0826c | MAB_0827 |
| GCCACAACGGCGTACCAGCATCGCCT | MAB_4857 | MAB_4858 |
| GCAAGGGTTACCTATGTTGAGCGGCA | MAB_2750c | MAB_2751 |
| GACCACTCTCGTTAGGGGCGTGTGGG | MAB_2796 | MAB_2797c |
| CGCGCCGTCGCTTATTACCCTGTGGG | MAB_0586 | MAB_0587 |
| CCGGTTCGTGTGTATAGTGGGGTTAC | MAB_0431c | MAB_0432 |
| CCCTGTGCGTTATAAGTTGAAAGGGG | MAB_3189c | MAB_3190c |
| CAGGAACTGGCTTAATTGGTCGCTTA | MAB_1992c | MAB_1993 |
| CTCAACAGCATTTACCACGCAGTCAC | MAB_2670 | MAB_2671 |
a
The identified genes are candidates to be involved in an S→R colony morphology transition. The TA hits are indicated in bold.