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. 2020 Nov 9;15(11):e0241786. doi: 10.1371/journal.pone.0241786

Utility of the monocyte to lymphocyte ratio in diagnosing latent tuberculosis among HIV-infected individuals with a negative tuberculosis symptom screen

Jonathan Mayito 1,*, David B Meya 1,¤, Joshua Rhein 2, Christine Sekaggya-Wiltshire 1
Editor: Seyed Ehtesham Hasnain3
PMCID: PMC7652277  PMID: 33166312

Abstract

Background

Latent Tuberculosis Infection (LTBI) remains a major driver of the TB epidemic, and individuals with Human Immuno-deficiency Virus (HIV) are particularly at a heightened risk of developing LTBI. However, LTBI screening among HIV-infected individuals in resource limited setting is largely based on a negative symptom screen, which has low specificity.

Methods

In a cross sectional diagnostic study, 115 HIV infected participants with a negative symptom screen will be consented and enrolled. They will be requested to donate 5 ml of blood for complete blood count (CBC) and interferon gamma release assay (IGRA) testing. In a nested prospective study, the 115 participants will be initiated on Tuberculosis Preventive Therapy and the CBC testing repeated after 3 months. In the analysis of study finding, the monocyte to lymphocyte ratio (MLR) will be derived from the dividend of the absolute monocyte and lymphocyte counts. The optimal MLR positivity cut-off for elevated or normal MLR will be the highest value of Youden’s index, J (sensitivity + specificity-1). The MLR will be cross tabulated with the IGRA status to determine the sensitivity, specificity, negative and positive predictive values of the MLR. The area under the receiver operating characteristic (ROC) curve will be determined to give the overall diagnostic accuracy of MLR. The baseline and 3 month CBC will be used to determine the change in MLR, and a random effect logistic regression will be used to determine factors associated with the change in the MLR.

Discussion

If positive results are realized from this study, the MLR could become an inexpensive alternative biomarker with potential to improve the specificity of the negative symptom screen in identifying individuals that should be targeted for TB preventive therapy.

Background

Latent Tuberculosis Infection (LTBI) remains a major driver of the tuberculosis (TB) epidemic. Up to 1.7 billion people worldwide are latently infected, and at risk of TB disease [1]. The Human Immuno-deficiency Virus (HIV) positive individuals are 20–30 times more likely to develop LTBI, and have a 5–15% risk per year and a 30% life time risk of developing active TB [2, 3]. The World Health Organization (WHO) END Tuberculosis (TB) Strategy aims to end the epidemic by 2030, partly through scaling up screening of TB contacts and high risk groups for LTBI treatment [4].

However, LTBI diagnosis is still a challenge; the Interferon Gamma Release Assay (IGRA) and Tuberculin Skin Test (TST) on which LTBI diagnosis is based, are memory T-cell response based tests, which may remain positive beyond the clearance of the infection [5], making identification of those at ultimate risk of progressing to active TB challenging. Furthermore, IGRA use is limited by; cost, requirement for special equipment and personnel, while TST use is limited by; false positives due to BCG vaccination and cross-reaction with environmental non-tuberculous Mycobacteria, need for two patient visits, and false negative results due to; anergy, malnutrition, immuno-suppression and incorrect administration [6, 7].

Currently, WHO recommends an LTBI screening algorithm based on a negative symptom screen including; cough, fever, night sweats and weight loss, to identify HIV infected patients eligible for Tuberculosis Preventive Therapy (TPT). Because of the limitations mentioned earlier and low positive predictive values (IGRA—2.7% vs TST—1.5–2.1%) for progression to active TB, IGRA and TST are recommended as additional tests where feasible [810]. This presents two potential problems; 1) using an approach with limited specificity in identifying those at ultimate risk of LTBI, making it expensive and also catching individuals who may not need preventive treatment, and 2) misdiagnosis of subclinical TB as LTBI, consequently targeting it with inappropriate therapy.

The Monocyte to Lymphocyte Ratio (MLR), is a rapid and inexpensive biomarker with potential to differentiate LTBI from active TB, because a higher MLR occurs in adults with active TB (0.5 IQR [0.36–0.64]) compared to those with LTBI (0.25 IQR [0.20–0.28]) [11]. Similarly, in children with confirmed TB (0.47 IQR [0.38–0.68]) compared to those unlikely to have TB (0.21 IQR [0.14–0.39)] [12]. An MLR cut-off value of 0.38 in HIV-infected Kenyan children had a sensitivity of 77%, specificity of 78%, positive predictive value of 24%, and negative predictive value of 97% for identification of active TB [12]. A lower cut-off (0.29) in HIV-uninfected Italians had high sensitivity (91%) and specificity (94%) [12]. In addition to being useful for diagnosis, the MLR can also monitor TB treatment because it declines with therapy, before (0.41 [IQR: 0.38–0.68]) and after (0.11 [IQR: 0.048–0.348]) TB treatment [13]. Finally, an MLR greater than 0.87 was associated with an increased risk of active TB within 5 years of anti-retroviral therapy (ARVs) initiation [11, 14].

This study will therefore evaluate the diagnostic performance of the MLR compared to IGRA, and measure the change in MLR from baseline to three months during TPT, among HIV-infected patients with a negative WHO symptom screen. The MLR has potential to become an alternative biomarker for screening for LTBI and identifying individuals more likely to benefit from TPT. This would help in targeting preventive therapy to only individuals at utmost risk for active TB, given the enormous task it would be to reach all the 1.7 billion people estimated to be infected. Targeting preventive treatment to those at utmost risk would not only be cost effective but also more feasible, particularly in resource limited settings. Positive results from this study, will therefore provide valuable information on MLR as a potential biomarker to bridge gaps in LTBI diagnosis.

The study primary objective is as follows: To determine the diagnostic performance of the monocyte to lymphocyte ratio against IGRA in diagnosing latent TB among HIV-infected individuals with a negative WHO TB symptom screen.

And the secondary Study Objective is as follows: To determine the change in the monocytes to lymphocytes ratio measured at baseline, and three months among HIV-infected individuals during tuberculosis preventive therapy.

The hypothesis underpinning the study objectives is grounded in the relationship of M.tb with monocytes as the target cells for infection, and lymphocytes as the main immune effectors cells against M.tb infection. We therefore hypothesize that M.tb through the interferon gamma signaling effect on hematopoiesis leads to proliferation of the myeloid biased hematopoietic stem cells (HSCs) to produce target cells for propagating infection relative to the lymphoid biased HSCs leading to a higher MLR in TB infection.

Study methods

Study design

Primary objective: A cross sectional diagnostic study will be carried out among HIV infected patients to determine the diagnostic performance of the MLR against IGRA in diagnosing LTBI.

Secondary objective: A nested prospective study will be carried out among HIV infected individuals to determine the change in the MLR measured at baseline, and after three months of TPT.

Study participants

Study eligibility criteria

The study participants will be HIV infected patients with a negative TB symptom screen regardless of whether they have initiated anti-retroviral therapy (ART) or not; with no clinical (negative WHO TB four symptom screen) symptoms of active TB, aged 18 years and above, able to give written informed consent to participate in the study, and are contactable by telephone to allow communication to ensure attendance of the follow up visit.

On the other hand, the study will exclude anyone; who has ever received TPT or standard anti-mycobacterial treatment, or has a known medical condition which may interfere with the participant’s ability to participate in the study such as blood dyscrasia; sickle cell anemia, myelodysplastic syndromes, leukemia, or any current viral or bacterial infections.

Participant recruitment

The participants will be recruited and followed up from the Infectious Disease Institute (IDI) which is an urban HIV out-patient clinic with over eight thousand HIV patients under its care. Participants will also be recruited from Kampala City Council Authority (KCCA) health centers, which will act as only recruitment sites. The study participants will be consecutively approached, briefed about the study, and interested participants consented for screening according to the study eligibility criteria as described above. Eligible participants who give written informed consent will be screened and recruited into the study.

Test methods

Index test

The index test will be the MLR derived from dividing the absolute monocyte count by the absolute lymphocyte count. The absolute counts will be obtained from a complete blood count (CBC) that will be performed using a Beckman Coulter Ac•T 5diff AL (Autoloader) Hematology Analyzer. The optimal MLR positivity cut-off for elevated or normal MLR will be the highest value of Youden’s index, J (sensitivity + specificity-1). Values greater than the optimal diagnostic cut-off will indicate LTBI while those below imply that LTBI is unlikely. A receiver operating characteristic (ROC) curve derived from sensitivity and specificity of the MLR will be generated, and the area under the curve will give the overall diagnostic power of the MLR.

Reference test

The reference test will be the IGRA, particularly QuantiFERON®-TB Gold Plus (QFT-Plus) by Qiagen. The IGRA is currently the best available test for the diagnosis of LTBI due to lack of a gold standard. It is a commercial qualitative ELISA assay where 1 ml of blood is collected in each of the four tubes containing synthetic peptides; ESAT-6 (green)–TB1 and CFP-10 (yellow top)–TB2, Phytohaemagglutinin (PHA) (purple top)—Mitogen as the positive control and no antigen in the fourth tube (gray top)—Nil as the negative control. The positive, negative and intermediate results are determined as shown in the Table 1 below (QuantiFERON—TB Gold Plus Results table version 2.71).

Table 1. Interpretation of QuantiFERON—TB Gold Plus Results.
Nil (IU/mL) TB1 minus Nil (IU/mL) TB2 minus Nil (IU/mL) Mitogen minus Nil (IU/mL) QFT-Plus Result Report/Interpretation
≤ 8.0 ≥ 0.35 and ≥ 25% of Nil Any Any Positive M. tuberculosis infection likely
Any ≥ 0.35 and ≥ 25% of Nil
<0.35 OR ≥ 0.35 and < 25% of Nil ≥ 0.5 Negative M. tuberculosis NOT infection likely
< 0.5 Intermediate Likelihood of M. tuberculosis infection cannot be determined
< 0.8 Any

The results of the index test, reference test, and the clinical information will not be available to the laboratory staff at the time the tests assessment is carried out. The CBC and results of IGRA are automatically generated from the Coulter and ELISA reader machines respectively, and therefore will not be influenced by operator staff bias or the clinician.

Ethical consideration

The study protocol, informed consent forms, case report forms, and recruitment materials were reviewed and approved (SBS-794) on 24/06/2020 by the Makerere University College of Health Sciences’ School of Bio-medical Sciences Ethics Review Committee and now in the process of being submitted to the Uganda National Council of Science and Technology (UNSCT), prior to implementation of any study related activities. All participants will give informed consent prior to participation, and confidentiality will be ensured by using subject identification numbers, only authorized study staff having access to study documents and all study documents being stored under a double lock storage system.

Study visits

Study evaluations

Clinical Procedures. The general flow of the study procedures is illustrated in Fig 1.

Fig 1. Study flow chart.

Fig 1

Baseline visit. HIV-infected individuals willing to participate in the study will be assessed for; cough, weight loss, fevers and night sweats. Participants with a positive screen (at least one symptom present) will be referred for further TB screening while those with a negative screen will be screened for the study. In addition, a thorough physical examination for further TB screening will be carried out including; respiratory examination, and systemic assessment for clinical symptoms suggestive of TB, for example; lymphadenopathy, abdominal masses, and vertebral column abnormalities. Participants with a negative symptom screen and no clinical findings suggestive of TB will be consented for enrollment in the study. They will then be administered the study questionnaire and asked to donate 5 ml of whole blood for IGRA (4 ml) and CBC (1 ml) testing. These are illustrated in Table 2.

Table 2. Schedule of events.
Protocol activity Baseline Month 1 Month 2 Month 3
Consent x
History and examination x x
Questionnaire x x
IGRA x
CBC x x
Phone call/adherence x x x x

Follow up visits. The enrolled participants will then be initiated on the currently recommended TPT regimen i.e. isoniazid 300 mg daily for 6 months or 3HP (weekly isoniazid rifapentine for 3 months), and CBC measurement repeated after 3 months of treatment. Adherence support will be provided through the next of kin for daily reminders and monthly phone call reminders. The participants will also be linked to HIV care services if they are not already in care. Participants will be encouraged to seek medical care at any health facility or contact the study team about adverse events between scheduled study visits. The follow up procedures are also illustrated in Table 2.

Laboratory procedures

Specimen collection

Blood for IGRA testing will be collected in the special quantiFERON tubes and transported to the laboratory at room temperature within 16 hours from collection. The blood for CBC testing will be collected in EDTA vacutainer tubes. The IGRA test and CBC will be performed in the IDI Translation Research Laboratory and the IDI Makerere University-John Hopkins University (MUJHU) laboratory respectively.

Specimen preparation, handling and storage. The IGRA samples will be incubated at 37°C for 16 to 24 hours, centrifuged at 3000g for 10 minutes and the serum stored at -80°C until analysis. The analysis will follow the standard operating procedure as provided by the Qiagen Company, the makers of the Quantiferon kits. The CBC will be analyzed immediately or stored at 4°C till analysis using the using the Beckman Coulter Ac•T 5diff AL (Autoloader) Hematology Analyzer.

Statistical methods

Sample size and power

Sample size was derived using the formula for diagnostic studies based on sensitivity;

n=Z12×SN×(1SN)L2×prevalence [15], where SN—anticipated sensitivity, was set at 77% [12], and L2absolute precision required, set at 10%. Using an LTBI Prevalence of 65% (based on QuantiFERON) around Kampala suburbs [16], and considering a 10% loss to follow up, a sample size of 115 participants will give an 80% power of delineating the diagnostic performance of MLR.

Analysis of endpoints

The Independent variables will include; socio-demographics, body mass index (BMI), BCG status, HIV viral load, ART status, smoking status, alcohol intake, intensity and duration of contact with TB patient (where there is known contact with a TB patient), and inter-current infections between study visits.

Descriptive analysis

The continuous variables for example age, weight and height will be reported as means with their standard deviations for normally distributed variables, while the median will be reported for skewed distribution since it is more stable to outliers. The categorical variables for example BMI, BCG status, viral load (detected or not detected), ART status, smoking, alcohol intake, and time of contact will be reported as proportions in terms of frequencies and percentages.

Diagnostic accuracy of MLR

The MLR will be derived as a dividend of the absolute monocyte count by the lymphocyte absolute count. The optimal MLR positivity cut-off for elevated or normal MLR will be the highest value of Youden’s index, J (sensitivity + specificity-1) derived from the sensitivity and specificity of all possible cut-off values on the ROC curve. The sensitivity, specificity, positive and negative predictive values will be determined from a 2X2 table between MLR and IGRA, and the diagnostic power of the MLR determined from area under the ROC curve.

Change in MLR

The change in MLR will be determined by subtracting MLR at 3 months from baseline MLR. Patients will be categorized as IGRA positive and negative, and the change in MLR will be compared between IGRA-positive and IGRA-negative using a paired T-test for paired proportions. A random effect logistic regression analysis will be conducted to determine factors associated with the change in the MLR. This model will cater for the variation arising from loss of independence due to the repeated measurement.

Confounders: Patients who are known to have conditions that can alter the MLR such as blood dyscrasia; sickle cell anemia, myelodysplastic syndromes, leukemia, or any current viral or bacterial infections will be excluded from the study at enrolment. Any acute bacterial or viral infections occurring during follow up will be noted and included in the regression model to see if they had any impact.

Dissemination of study results

Dissemination of the results of this study will be done through multiple methods including; publication in a peer-reviewed journal and presentation at an international conference with associated media coverage. The results will also be availed to the National TB and Leprosy Program at Ministry of Health, IDI research department, study participants and other policy stakeholders. The results will also be made available as both printed and online resources. The sponsors will also receive periodic reports. The results will be presented in a clear and concise format appropriate to the target audience such as journal article for research scientists, media briefs for media and study participants’ briefs for the study participants.

Discussion

The MLR is derived from the CBC, a test that is commonly carried out in clinical setting, and therefore would easily be scale up in resource setting. Apart from TB, the MLR as an inflammatory marker has shown usefulness in determining prognosis of certain disease conditions including cancer, rheumatoid arthritis and coronary artery disease [1719]. Its potential in differentiating between LTBI and active TB has been highlighted in the background above. However, its role in identifying asymptomatic individuals with LTBI who would benefit from TPT has not been evaluated, and this is the focus of this study.

The study has been designed to evaluate the MLR against IGRA, to give an impression of the diagnostic utility of the MLR. This will provide useful information about the MLR as an alternative biomarker that could improve the currently used symptom screen in identifying individuals to be targeted for TPT. Improving the current screening algorithm would reduce the number of individuals exposed to treatment that may not benefit to them and those with sub-clinical TB disease inappropriately treated with TPT. According to prevalence data in Uganda, up to; 51 percent, and 35 percent of individuals, would not require TPT based on TST and IGRA testing respectively [20, 21].

Furthermore, this study by measuring change in MLR during TPT therapy, will provide information on the MLR’s ability to monitor response to TPT. Currently, there is lack of a laboratory or radiological test to monitor response to TPT, partly because the IGRA and TST have low reversion rates. The current practice is that individuals are initiated on TPT but at the end of the preventive therapy, we are unable to tell who has cleared or failed to clear the infection, and therefore in need of prolonged or alternative therapy. The MLR as highlighted earlier has been shown to decline with treatment of active TB and could be of value in determining the success of the preventive therapy.

This study therefore seeks to address the above two critical gaps in the diagnosis of LTBI and monitoring response to its treatment, which gaps have driven the global efforts to control TB towards massive treatment. Massive treatment of potential risk groups is not only tedious but is also not cost effective, and therefore less attractive to low resource settings which bear the largest burden of LTBI. This study will therefore evaluate MLR as a biomarker that may improve the risk stratification to better target TPT to those at utmost risk.

Our study has some limitations. Due to lack of a gold standard for the diagnosis of LTBI, we will use IGRA, the currently best available LTBI test, as the reference test for the MLR. The MLR is also a non-specific biomarker and like other parameters of CBC, may be affected by concurrent infections, malignancies and blood dyscrasias, which may limit its use in individuals with these conditions, and as such would more likely be deployed as a screening biomarker. The study will make all efforts to exclude individuals known to have these conditions at baseline, while the infections that occur during follow up will be included in the regression analysis to determine if they affected the outcome. Another limitation is that the study may not be able to recruit enough patients not ARVs versus those on ARVs so as to allow studying the effect of ARVs on the MLR.

In summary, this study will determine the diagnostic utility of the MLR for LTBI and monitoring response to preventive therapy. It is hoped that the results, will present the MLR as an inexpensive alternative biomarker that will improve the specificity of the symptom screen in identifying individuals that should be targeted for preventive therapy.

Adverse event reporting

At the follow up visits, the study investigator will assess for adverse events (AEs) that may have occurred since the previous visit. The investigators will generate and submit annual reports summarizing these AEs to the institutional review board and UNCST. All AEs will be managed according to the standard clinical protocol of IDI and Mulago national referral hospital.

Supporting information

S1 File

(PDF)

Data Availability

All relevant data from this study will be made available upon study completion.

Funding Statement

Research reported in this publication was supported by the Fogarty International Center of the National Institutes of Health under grant #D43TW009345 awarded to the Northern Pacific Global Health Fellows Program. DELTAS Africa Initiative (ref. DEL-15-011, via THRiVE-2) funds JM’s PhD studies. The DELTAS Africa Initiative is an independent funding scheme of the AAS’s Alliance for Accelerating Excellence in Science in Africa and supported by the NEPAD Agency with funding from the Wellcome Trust Grant No. 107742/Z/15/Z and the United Kingdom government. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. The funders had and will not have a role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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9 Sep 2020

PONE-D-20-22616

Utility of the monocyte to lymphocyte ratio in diagnosing latent tuberculosis among HIV-infected individuals with a negative tuberculosis symptom screen

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Reviewer #3: Partly

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Partly

Reviewer #2: Partly

Reviewer #3: Partly

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Jonathan et al, in their Protocol suggest utilization of MLR and IGRA as prognostic marker to corelate the Latent TB with HIV disease severity.

Major comments / concerns

Author should justify the 115 number of patients , from which calculation they came to this study, would this be a clinical trials or prospective study

I found this proposal somewhat ambitious because author propose to use monocyte to lymphocyte ratio as prognostic marker specially for latent TB. Here , my opinion would be revisit literature and revisit the concept .

Pls revise the text pertaining to the influence of IFN on proliferation of HSC. This is fundamental error, HSC require G/M-CSF or CSF-1 for proliferation and not IFN !!

Monocyte population is just one rough parameter which is used in CBC. However for the disease management , it is macrophages which are more relevant like in granuloma and in latent TB, M2 or foamy macrophage are most relevant population which promote latency and not mere monocyte.

This is also due to fact that Both naive Monocyte and macrophages and CD14+/; F4/80+. During acute / active TB infection Monocyte get differentiated into CD11b+/ CD68+/Inos+ Th1 primed macrophages. during persistent / latent episode of TB , same Th1 / M1 populations, interestingly, get polarize toward M2 / Foamy macrophages and hide / carry bacilli to the gaseous granulomatous lesions of lung. So author should redefine this aspect.

Other aspect is with IGRA so I want to suggest author that author should focus on Th1/Th2 kits because other than IFN, TNF , IL-4/IL-6/IL-10/IL-13 are decisive host factors which can dictate the pathogenesis of acute and latent TB. So here author may include Th1/Th2 kit as parameters which would be much robust correlation specially when including HIV+ patients.

Also for MLR , the author should use other term as in the feild of hematology / immunology MLR means mix lymphocyte ratio which is not clear here. Also I would like to suggest authors to include both M1/M2 macrophages , M1/ T cells , M1/cd4, M1/ CD8 and CD4/8 ratio as additional parameters for more in depth immunomonitoring purpose . This will give protocol strength and then analysis would be more valid.

I could not follow the arguments related to Prophylactic treatment of volunteers and why only for 3 months ? why Author only given INH and why not other 1st generation drug ?. I think it would be more appropriate to include latent TB patients which are on 2nd generation TB drug including Rapamycin and Bedaquiline drugs e.g.

Did author plan to include patients with non reactive or extra pulmonary TB with PPE as well in their cohort ??

Why author did not include PPD in their analysis !!!

In the current draft, it is not clear which group of HIV patients would be included. What is the influence of Anti retro-viral therapy also contribute to IFN gamma so from that point of view, some newly diagnosed HIV patients should also be included ( subjected to IEC approval but if author can include these patients, this would be baseline data. This would also address the pattern of IGRA.

Minor points

Finally , author should revise the entire document for the language because current version is difficult to analyze, e.g. second paragraph of Background !!! Please remove high impact word from the Dissemination paragraph. The author should be realistic.

Reviewer #2: This manuscript is rejected as this is a registered report protocol and it does not provide any new information at this stage. The study is a proposed hypothesis and still requires methods to be validated. However evaluation of diagnostic performance of Monocyte to Lymphocyte ratio (MLR) in comparison to IGRA assay still needs to be documented.

Outcome of this study will provide some data and insights into the comparative analysis which could be useful for development of a biomarker for LTBI diagnosis.

Reviewer #3: In this manuscript (Registered Report Protocol) the authors proposed the diagnostic utility of the MLR (monocyte to lymphocyte ratio) in LTBI and monitoring response to preventive therapy in HIV patients.

Following are my comments on the protocol

1) In the literature available it is mentioned that Monocyte:lymphocyte ratio (M:L) has been identified as a risk factor in development of TB disease in children and those undergoing treatment for HIV in co-infected individuals. More recently, a high M:L has been shown to distinguish persons with active and latent TB from uninfected persons, and been used to predict risk of developing TB in infants. M:L has been found to reduce after treatment for HIV, and corresponded with improvement in the patient’s condition5. Therefore, in humans it appears that the M:L shows promise as an indicator of risk of developing active TB and could facilitate the targeting of preventative treatments/therapy for those who are defined as being at greater risk.

References

Naranbhai V, et al. Ratio of monocytes to lymphocytes in peripheral blood identifies adults at risk of incident tuberculosis among HIV-infected adults initiating antiretroviral therapy. J. Infect. Dis. 2014;209:500–9. doi: 10.1093/infdis/jit494.

Naranbhai V, et al. The association between the ratio of monocytes:lymphocytes at age 3 months and risk of tuberculosis (TB) in the first two years of life. BMC Med. 2014;12:120. doi: 10.1186/s12916-014-0120-7.

So, the novelty of this work is questionable. Authors are advised to revisit the literature which is full of this kind of evidences.

2) Although monocyte to lymphocyte ratio is a good indicator of risk of developing active TB but role of macrophages also could not be ignored. It is advised to include macrophage variations also in this protocol.

3) Since HIV infection also manipulate the M/L ratio, authors should clarify what would be there control group.

References

The Journal of Infectious Diseases Vol. 162, No. 6 (Dec., 1990), pp. 1239-1244 Analysis of Lymphocytes, Monocytes, and Neutrophils from Human Immunodeficiency Virus (HlV)-Infected Persons for HIV DNA

J Infect Dis. 2014 Feb 15; 209(4): 500–509. Ratio of Monocytes to Lymphocytes in Peripheral Blood Identifies Adults at Risk of Incident Tuberculosis Among HIV-Infected Adults Initiating Antiretroviral Therapy

J Acquir Immune Defic Syndr. 2014 Dec 15; 67(5): 573–575. The association between the ratio of monocytes:lymphocytes and risk of tuberculosis(TB) amongst HIV infected postpartum women

4) The authors should also clarify the HIV patients selected for the study are on ARV therapy and if these drugs are having impact on M/L ratio.

In my opinion the study need to be redesigned keeping the above mentioned points in centre.

**********

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

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PLoS One. 2020 Nov 9;15(11):e0241786. doi: 10.1371/journal.pone.0241786.r002

Author response to Decision Letter 0


15 Oct 2020

Response to reviewer comments for “Utility of the monocyte to lymphocyte ratio in diagnosing latent tuberculosis among HIV-infected individuals with a negative tuberculosis symptom screen”

Dear Senior Editor,

Thank you for inviting revision of our manuscript. Please find below responses to the queries and comments raised at the initial review of our manuscript.

Qn. We note that you have provided funding information that is not currently declared in your Funding Statement. However, funding information should not appear in the Acknowledgments section or other areas of your manuscript. We will only publish funding information present in the Funding Statement section of the online submission form.

Response: We are sorry for this error. The funder stated in the acknowledgement section will not contribute directly to the proposed work but funds protected time for Jonathan’s PhD studies. We thought it prudent to acknowledge this funding. The funding section has been updated to include Jonathan’s PhD funders.

Academic editor review

Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming.

Response: The manuscript has been formatted according to PLOS ONE’s style

(a) Please amend your current ethics statement to state that the proposed study was been reviewed and approved by the ethics committee.

(b) Once you have amended this/these statement(s) in the Methods section of the manuscript, please add the same text to the “Ethics Statement” field of the submission form (via “Edit Submission”).

Response: The ethics statement has been revised to indicate that the protocol has already been reviewed. It has also been moved to the methods section.

In your Methods section, please provide additional information about the participant recruitment method and the demographic details of your participants. Please ensure you have provided sufficient details to replicate the analyses such as: a) a description of how participants will be recruited and b) descriptions of where participants will be recruited and where the research will take place.

Response: The participant recruitment section has been revised to provide more detail to allow the replication of the study. It now states where and how the participants will be recruited.

We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

Response: Regarding depositing the study data at a public online repository, we have clarified that this will be done when the study has been implemented and completed, and not when this manuscript has been accepted. This is because this is a registered protocol that has not been implemented.

We note you have included a table to which you do not refer in the text of your manuscript. Please ensure that you refer to Table 2 in your text; if accepted, production will need this reference to link the reader to the Table.

Response: The table that had not been referenced in the text has now been referenced.

Your ethics statement must appear in the Methods section of your manuscript. If your ethics statement is written in any section besides the Methods, please move it to the Methods section and delete it from any other section. Please also ensure that your ethics statement is included in your manuscript, as the ethics section of your online submission will not be published alongside your manuscript.

Response: The ethics statement has been moved to the methods section.

Reviewer #1: Jonathan et al, in their Protocol suggest utilization of MLR and IGRA as prognostic marker to corelate the Latent TB with HIV disease severity.

Major comments / concerns

Qn1. Author should justify the 115 number of patients, from which calculation they came to this study, would this be a clinical trials or prospective study

Response: Below is the calculation that led to the sample size of 115

Sample size was derived using the formula for diagnostic studies based on sensitivity;

n= (Z_(1-∝)^2×S_N×(1-S_N))/(L^2×prevalence) 1

SN - Anticipated sensitivity, set at 77% 2

L2 - Absolute precision required, set at 10%

Prevalence – prevalence of LTBI in Kampala based on TST is 49%3, while the prevalence based on QuantiFeron is 65%4. The prevalence based on QauntiFeron was used.

Zα/2 - at 95% confidence level and α 0.05 is 1.96, and Zβ – at a power of 80% and β 0.2 is 0.84.

Substituting in the formula, the sample size will be 105 participants. Considering a 10% loss to follow up over the 6 months, the final sample size will be 115 participants. At this samples size, we will have at least an 80% chance of delineating the diagnostic performance of the MLR. Please see section on statistical methods under sample size and power.

Will this be a clinical trial or a prospective study?

Response: This will be a diagnostic study with a nested prospective component. Please see section on Study Methods; study design.

Qn2. I found this proposal somewhat ambitious because author propose to use monocyte to lymphocyte ratio as prognostic marker specially for latent TB. Here, my opinion would be revisit literature and revisit the concept.

Response: Thank you for this observation. We propose to explore whether the MLR can be used to monitor response to treatment for latent TB by measuring its change between baseline and three months during latent TB chemoprophylaxis. This was informed by the study by Choudhary et al5 that showed that the MLR declined with active TB treatment; before (0.41 [IQR: 0.38–0.68]) and after (0.11 [IQR: 0.048–0.348]) TB treatment. The MLR has also been used as a prognostic factor in other diseases including cardiovascular disease6 and cancer7. The complete blood count from which the MLR is derived is commonly used in routine clinical practice to monitor prognosis if infectious and other illnesses. We are therefore that our concept id based on sound scientific basis.

Qn3. Pls revise the text pertaining to the influence of IFN on proliferation of HSC. This is fundamental error, HSC require G/M-CSF or CSF-1 for proliferation and not IFN !!

Response: Thank you for this argument in reference to our hypothesis that “We therefore hypothesize that M.tb through the interferon gamma signaling effect on hematopoiesis leads to proliferation of the myeloid biased hematopoietic stem cells (HSCs) to produce target cells for propagating infection relative to the lymphoid biased HSCs leading to a higher MLR in TB infection” This hypothesis was informed by sound literature review showing that in chronic infection, IFN-γ signaling through STAT1 activates the expression of interferon regulatory factors (IRF) that can promote differentiation towards the myeloid lineage8-10. The myeloid lineage is the source of monocyte/macrophages which are the target cells for the TB bacilli. This leads to a higher MLR as seen in active TB as we have highlighted in the backgrounad. Our aim is to see whether this is replicated in latent TB.

Qn4. Monocyte population is just one rough parameter which is used in CBC. However, for the disease management, it is macrophages which are more relevant like in granuloma and in latent TB, M2 or foamy macrophage are most relevant population which promote latency and not mere monocyte. This is also due to fact that Both naive Monocyte and macrophages and CD14+/; F4/80+. During acute / active TB infection Monocyte get differentiated into CD11b+/ CD68+/Inos+ Th1 primed macrophages. during persistent / latent episode of TB , same Th1 / M1 populations, interestingly, get polarize toward M2 / Foamy macrophages and hide / carry bacilli to the gaseous granulomatous lesions of lung. So author should redefine this aspect.

Response: We appreciate the argument of the reviewer. The debate on the mononuclear phagocyte system function has not been concluded. The general agreement is that except for a few tissue macrophages like the alveolar macrophages that are derived embryonically and are capable of self-renewal at steady state11, the rest of the macrophages are derived from circulating monocytes12. The circulating monocytes replenish tissue resident macrophages especially during injury, infection and inflammation, and therefore can act as a proxy for changes in the tissue macrophages13. The reviewer seems to agree with this when he/she states that “During acute / active TB infection Monocyte get differentiated into CD11b+/ CD68+/Inos+ Th1 primed macrophages. during persistent / latent episode of TB, same Th1 / M1 populations, interestingly, get polarize toward M2 / Foamy macrophages and hide / carry bacilli to the gaseous granulomatous lesions of lung”. Therefore, the monocyte can be a fair proxy for the changes in macrophages within the tissue. The aim of our study is to evaluate a simple and easy to scale up alternative biomarker to improve the screening of latent TB more so in the resource limited settings, and not to describe the homeostasis of monocytes and tissue macrophages which has already extensively been described14.

Qn5. Other aspect is with IGRA so I want to suggest author that author should focus on Th1/Th2 kits because other than IFN, TNF , IL-4/IL-6/IL-10/IL-13 are decisive host factors which can dictate the pathogenesis of acute and latent TB. So here author may include Th1/Th2 kit as parameters which would be much robust correlation specially when including HIV+ patients.

Response: Among the Th1/Th2 cytokines, interferon gamma is the principle activator of macrophages15, and its use in the diagnosis of latent TB is well recognized, and adopted in the World Health Organization (WHO) guidelines for the diagnosis and treatment for latent TB16, particularly in resource rich country unlike for the Th1/Th2 kits. As such it is the best available test (due to lack of a gold standard) for latent TB and therefore a suitable comparator test for any novel test for diagnosing/screening latent TB. The IGRA in the form of QuantiFeron-TB Gold plus was further improved with the inclusion of an antigen to stimulate the CD8+ T-cells, following evidence suggesting the role of the CD8+T-cells in the host defense against M.tb through producing IFN-gamma, stimulating macrophages, killing infected cells and directly lysing intracellular M.tb. The QuantiFeron-TB Gold plus is what will be used in the study as the comparator test to the MLR. Testing the role of the other members of the Th1/Th2 cytokines in diagnosing latent TB as suggested by the reviewer is beyond the intended scope of this study.

Qn6. Also for MLR , the author should use other term as in the feild of hematology / immunology MLR means mix lymphocyte ratio which is not clear here. Also I would like to suggest authors to include both M1/M2 macrophages , M1/ T cells , M1/cd4, M1/ CD8 and CD4/8 ratio as additional parameters for more in depth immunomonitoring purpose . This will give protocol strength and then analysis would be more valid.

Response: We appreciate that the MLR may carry other meanings as pointed out by the reviewer. However, in most of literature most of which is cited in this manuscript, the monocyte to lymphocyte ratio is abbreviated as MLR or ML ratio. We request that for easy comparison and identification with the contemporary literature in this area of study, we maintain the abbreviation. For better clarification and inline with good scholarly writing skills, the abbreviation is described at first use. We hope that this will remove any confusion that could have arisen with further reading down the manuscript.

We will adopt the suggestion to use the CD4/CD8 ratio in the evaluation where it is available since CD4 are no longer routinely done except at initiation of anti-retroviral therapy, however for the M1/M2, M1/T cells M1/CD4 and M1/CD8 we feel it’s beyond the intended scope for this study and I refer the reviewer back to the response to Qn4.

Qn7. I could not follow the arguments related to Prophylactic treatment of volunteers and why only for 3 months? why Author only given INH and why not other 1st generation drug? I think it would be more appropriate to include latent TB patients which are on 2nd generation TB drug including Rapamycin and Bedaquiline drugs e.g.

Response: Thank you for this observation. The Uganda Ministry of health is in the process of updating its latent TB treatment guidelines to adopt the 3-isoniazid-rifapentine (3HP) as its first line. 3HP will be given weekly for 3 months. Therefore, it is likely that by the time the study is implemented Uganda will be using the 3HP regimen. We have updated this section to clarify that participants will be treated with 3HP for 3 months as standard of care and isoniazid as an alternative regimen. The second generation drugs suggested by the reviewer are not available in the country as treatment for latent TB.

Qn8. Did author plan to include patients with non reactive or extra pulmonary TB with PPE as well in their cohort ??. Why author did not include PPD in their analysis !!!

Response: PPD is not in regular use anymore in TB programs due to the difficulty of getting the PPD which is no longer routinely manufactured. In addition, the PPD as the skin tuberculin test (TST) use is limited by false positives due to BCG vaccination and cross-reaction with environmental non-tuberculous Mycobacteria, need for two patient visits, and false negative results due to; anergy, malnutrition, immuno-suppression and incorrect administration. These limitations are clearly laid out in the background of the manuscript. Secondly, the superiority of IGRA in terms of sensitivity and specificity particularly is the setting of extensive BCG immunization is well recognized. We are therefore confident that we will have the better comparator for MLR in IGRA than in PPD or TST.

Qn9. In the current draft, it is not clear which group of HIV patients would be included. What is the influence of Anti retro-viral therapy also contribute to IFN gamma so from that point of view, some newly diagnosed HIV patients should also be included (subjected to IEC approval but if author can include these patients, this would be baseline data. This would also address the pattern of IGRA.

Response: The current WHO policy is to test and treat all HIV patients and therefore by the end of the 3 months follow up proposed in the study, all potential participants would have been started on anti-retroviral therapy. For the first objective which is cross sectional, we will include analysis of naïve versus ART experienced participants. This has been clarified in section on study participants and statistical methods.

Minor points

Qn10. Finally, author should revise the entire document for the language because current version is difficult to analyze, e.g. second paragraph of Background !!! Please remove high impact word from the Dissemination paragraph. The author should be realistic.

Response: Thank you for this recommendation. The document has been proof read by a native English speaker. The words “high impact” have been removed. Please see the section on dissemination of study results

Qn11. Reviewer #2: This manuscript is rejected as this is a registered report protocol and it does not provide any new information at this stage. The study is a proposed hypothesis and still requires methods to be validated. However evaluation of diagnostic performance of Monocyte to Lymphocyte ratio (MLR) in comparison to IGRA assay still needs to be documented.

Outcome of this study will provide some data and insights into the comparative analysis which could be useful for development of a biomarker for LTBI diagnosis.

Response: It is unfortunate that the reviewer rejects the manuscript on the basis that it is a registered protocol. To the best of our knowledge, Plose One accepts and publishes registered protocol and it was our intention to have this published as a registered protocol. On the other hand, we are happy that the reviewer shares the same conviction that this an important concept to study and it has potential to lead to the development of a biomarker for diagnosis of LTBI.

Qn12. Reviewer #3: In this manuscript (Registered Report Protocol) the authors proposed the diagnostic utility of the MLR (monocyte to lymphocyte ratio) in LTBI and monitoring response to preventive therapy in HIV patients.

Following are my comments on the protocol

1) In the literature available it is mentioned that Monocyte:lymphocyte ratio (M:L) has been identified as a risk factor in development of TB disease in children and those undergoing treatment for HIV in co-infected individuals. More recently, a high M:L has been shown to distinguish persons with active and latent TB from uninfected persons, and been used to predict risk of developing TB in infants. M:L has been found to reduce after treatment for HIV, and corresponded with improvement in the patient’s condition5. Therefore, in humans it appears that the M:L shows promise as an indicator of risk of developing active TB and could facilitate the targeting of preventative treatments/therapy for those who are defined as being at greater risk.

References

Naranbhai V, et al. Ratio of monocytes to lymphocytes in peripheral blood identifies adults at risk of incident tuberculosis among HIV-infected adults initiating antiretroviral therapy. J. Infect. Dis. 2014;209:500–9. doi: 10.1093/infdis/jit494.

Naranbhai V, et al. The association between the ratio of monocytes:lymphocytes at age 3 months and risk of tuberculosis (TB) in the first two years of life. BMC Med. 2014;12:120. doi: 10.1186/s12916-014-0120-7.

So, the novelty of this work is questionable. Authors are advised to revisit the literature which is full of this kind of evidences.

Response: We thank the reviewer for highlighting this literature which forms the basis of our concept in this manuscript. All the literature that the reviewer highlights above was described in the background of this manuscript. We would like to bring it to the attention of the reviewer that work in the above studies aimed to; differentiate latent from active TB, monitor response to treatment of active TB and determine incidence of active TB with a raised MLR. In our concept our focus is on the ability of the MLR to diagnose latent TB, and to the best of our knowledge this is the first attempt to show the diagnostic potential of the MLR for latent TB using IGRA (currently the best available test for latent TB) as the comparator test, particularly in HIV infected individuals with a negative screen. The symptom based screen is currently the deployed screening tool for latent TB in majority of the developing countries but is of low specificity, and therefore the need for a biomarker to improve latent TB screening. In essence we want to show if the promise seen with the MLR in active TB can be replicated in latent TB. Therefore it is our conviction that the work is novel and it will add new knowledge to the screening/diagnosis of latent TB.

Qn13. 2) Although monocyte to lymphocyte ratio is a good indicator of risk of developing active TB but role of macrophages also could not be ignored. It is advised to include macrophage variations also in this protocol.

Response: We would want to refer the reviewer to the response to Qn 4: “We appreciate the argument of the reviewer. The debate on the mononuclear phagocyte system function has not been concluded. The general agreement is that except for a few tissue macrophages like the alveolar macrophages that are derived embryonically and are capable of self-renewal at steady state11, the rest of the macrophages are derived from circulating monocytes12. The circulating monocytes replenish tissue resident macrophages especially during injury, infection and inflammation, and therefore can act as a proxy for changes in the tissue macrophages13, and therefore can act as a proxy for changes in the tissue macrophages. The aim of our study is to evaluate a simple and easy to scale up alternative biomarker to improve the screening of latent TB more so in the resource limited settings, and not to describe the homeostasis of monocytes and tissue macrophages which has extensively been described14”

Qn14. 3) Since HIV infection also manipulate the M/L ratio, authors should clarify what would be there control group.

References

The Journal of Infectious Diseases Vol. 162, No. 6 (Dec., 1990), pp. 1239-1244 Analysis of Lymphocytes, Monocytes, and Neutrophils from Human Immunodeficiency Virus (HlV)-Infected Persons for HIV DNA

Response: We thank the reviewer for sharing this article. The performance of the MLR will be measured against the IGRA positive versus the IGRA negative in a diagnostic study design. It is uncommon to have a control group in a diagnostic design. Regarding the effect of HIV, we will perform regression analysis to determine how some predictor variables affect the MLR. Viral load which is a measure of the HIV disease state will be one of the predictor variables tested. Therefore, detectable and undetectable viral load will give an indication on the effect of HIV on the performance of the MLR.

Qn15. J Infect Dis. 2014 Feb 15; 209(4): 500–509. Ratio of Monocytes to Lymphocytes in Peripheral Blood Identifies Adults at Risk of Incident Tuberculosis Among HIV-Infected Adults Initiating Antiretroviral Therapy

Response: This article is cited in our background.

Qn16. J Acquir Immune Defic Syndr. 2014 Dec 15; 67(5): 573–575. The association between the ratio of monocytes:lymphocytes and risk of tuberculosis(TB) amongst HIV infected postpartum women

Response: We appreciate this article that adds to the body of knowledge that a high MLR is associated with development of active TB. We have added this to our background. However, our focus remains to determine the diagnostic potential of the MLR in latent TB using IGRA as the comparator test.

Qn17. 4) The authors should also clarify the HIV patients selected for the study are on ARV therapy and if these drugs are having impact on M/L ratio.

In my opinion the study need to be redesigned keeping the above mentioned points in centre.

Response: We have clarified that majority of HIV patients in the study will likely be of ARVs. However, we will recruit even those not on ARVs given that they have a negative symptom screen. Though these are likely to be few given the test and treat policy that is currently employed in the management of HIV infection/disease. This may not allow sufficient numbers to show the effect of the ARVs on the MLR. However, we know that some nucleoside transcriptase inhibitors such as zidovudine have toxic effect on the neutrophils and may suppress the bone marrow. However, the use of zidovudine has declined because tenofovir replaced it as the preferred first line and now only used in some second line regimen and therefore we may not get sufficient number of patients on zidovudine to tease out its effect on the MLR. These have been stated as limitations.

________________________________________

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2. La Manna MP, Orlando V, Dieli F, et al. Quantitative and qualitative profiles of circulating monocytes may help identifying tuberculosis infection and disease stages. PLOS ONE 2017 Feb 12(2): e0171358.

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5. Choudhary RK, Wall KM, Njuguna I, et al. Monocyte-to-Lymphocyte Ratio Is Associated With Tuberculosis Disease and Declines With Anti-TB Treatment in HIV-Infected Children. J Acquir Immune Defic Syndr 2019 Feb; 80(2): 174-81.

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9. Morales-Mantilla DE, KY K. The Role of Interferon-Gamma in Hematopoietic Stem Cell Development, Homeostasis, and Disease. Curr Stem Cell Rep 2018; 4(3): 264-71.

10. Baldridge MT, King KY, Boles NC, al e. Quiescent haematopoietic stem cells are activated by IFN-γ in response to chronic infection. Nature 2010 June; 465: 793-7.

11. Epelman S, Lavine KJ, Randolph GJ, al e. Origin and Functions of Tissue Macrophages

Immunity 2014 Jul 41(1): 21-35.

12. Hume DA, Irvine KM, Pridans C. The Mononuclear Phagocyte System: The Relationship between Monocytes and Macrophages Trends in Immunology 2019 Feb; 40(2).

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Decision Letter 1

Seyed Ehtesham Hasnain

21 Oct 2020

Utility of the monocyte to lymphocyte ratio in diagnosing latent tuberculosis among HIV-infected individuals with a negative tuberculosis symptom screen

PONE-D-20-22616R1

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Reviewers' comments:

Acceptance letter

Seyed Ehtesham Hasnain

29 Oct 2020

PONE-D-20-22616R1

Utility of the monocyte to lymphocyte ratio in diagnosing latent tuberculosis among HIV-infected individuals with a negative tuberculosis symptom screen

Dear Dr. Mayito:

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on behalf of

Prof Seyed Ehtesham Hasnain

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    Data Availability Statement

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