Abstract
This data article accompanies the manuscript entitled: “Prothrombotic Disturbances of hemostasis of Patients with Severe COVID-19: a Prospective Longitudinal Observational Cohort Study” submitted to Thrombosis Research by the same authors. We report temporal changes of plasma levels of an extended set of laboratory parameters during the ICU stay of the 21 COVID-19 patients included in the monocentre cohort: CRP, platelet count, prothrombin time; Clauss fibrinogen and clotting factors II, V and VIII levels, D-dimers, antithrombin activity, protein C, free protein S, total and free tissue factor pathway inhibitor, PAI-1 levels, von Willebrand factor antigen and activity, ADAMTS-13 (plasma levels); and of two integrative tests of coagulation (thrombin generation with ST Genesia) and fibrinolysis (global fibrinolytic capacity - GFC). Regarding hemostasis, we used double-centrifuged frozen citrated plasma prospectively collected after daily performance of usual coagulation tests. Demographic and clinical characteristics of patients and thrombotic and hemorrhagic complications were also collected from patient's electronic medical reports.
Keywords: COVID-19, Intensive care unit, Thrombin generation, Fibrinolysis, Thrombosis, D-dimers, Hemostasis plasma proteins
Specifications Table
Subject | Hematology |
Specific subject area | Hemostasis, Coronavirus disease 2019 |
Type of data | Tables and Figures |
How data were acquired | Blood samples prospectively collected daily from intensive care unit (ICU) patients admitted for coronavirus disease 2019 (COVID-19). Corresponding instruments and reagents of laboratory hematology for: platelet count, prothrombin time, Clauss fibrinogen and clotting factors II, V and VIII levels, D-dimers levels, PAI-1 levels, antithrombin activity, protein C activity, free protein S antigen, total and free tissue factor pathway inhibitor antigens, von Willebrand factor antigen and activity, ADAMTS-13 levels), thrombin generation, and global fibrinolytic capacity (GFC); and C-reactive protein. |
Data format | Raw: Public repository. Analyzed: Tables and figures |
Parameters for data collection | Laboratory data: Clinical laboratory tests that describe disturbances of hemostasis of ICU patients, severely affected with CoViD-19: primary hemostasis (platelet count, von Willebrand factor antigen and activity; ADAMTS-13 activity); coagulation (prothrombin time, Clauss fibrinogen, clotting factors II, V and VIII levels, in vitro thrombin potential), natural anticoagulants (antithrombin activity, protein C activity, free protein S antigen, total and free tissue factor pathway inhibitor antigens); and fibrinolysis (D-dimers levels, PAI-1 activity, global fibrinolytic capacity). Clinical data: complications of hemostasis disturbances (thrombosis and hemorrhages) and relevant data for characterization of the cohort (age; sex, BMI, ethnicity, comorbidities, APACHE II, SOFA scores and PaO2/FiO2 ratios at ICU admission, ICU stay duration, anticoagulation regimen, ICU length of stay, need for respiratory, cardiocirculatory or renal support; death). |
Description of data collection | The following laboratory tests were performed with a STA-R Max (Diagnostica Stago, Asnières-sur-Seine) and reagents from Stago: prothrombin time (STA-NeoPTimal), Clauss fibrinogen (STA-Liquid FIB), clotting factor II (STA-NeoPTimal and STA – Deficient II), V (STA-NeoPTimal and STA – Deficient V) and VIII (STA-CK Prest and STA – Immunodef VIII), D-dimers (STA – LIATEST D-Di Plus), PAI-1 (STACHROM PAI-1), antithrombin (STA-Stachrom ATIII), protein C activity (STA – Stachrom Protein C), free protein S antigen (STA-LIATEST Free Protein S), total (Asserachrom total TFPI) and free TFPI (Asserachrom free TFPI), heparin anti-Xa activity (STA - Liquid anti-Xa), von Willebrand factor antigen (STA – LIATEST VWF:Ag). CRP levels were measured on a Vitros 5600 Integrated System with CRP Gold Latex reagents (DiAgam, Ghislenghien, Belgium) and platelet count on a Sysmex |
XN-20 analyzer with Cellpack reagent (Sysmex). Thrombin generation was measured on a ST Genesia with STG-ThromboScreen reagent (Stago) after neutralizing heparin with hexadimethrine bromide (25 μg/mL; polybrene, Sigma Aldrich, Saint-Louis, United States). Global fibrinolytic capacity was measured using the Lysis Timer instrument with dedicated reagents (Hyphen Biomed). ADAMTS13 activity was measured using the Technozym® ADAMTS-13 Activity ELISA kit (Technozym, Technoclone, Vienna, Austria). Von Willebrand activity was measured on an AcuStar analyser with HemosIL AcuStar VWF:RCo reagent (Instrumentation Laboratory). Laboratory data were retrieved from laboratory files. Clinical data were retrieved from patients’ medical charts. | |
Data source location | Institution: CHU UCL Namur – Godinne site. City: Yvoir. Country: Belgium. |
Data accessibility | Repository name: Mendeley Data Data identification number: 10.17632/g7x5nvj9d2.1 Direct URL to data: https://dx.doi.org/10.17632/g7x5nvj9d2.1 |
Related research article | M. Hardy, I. Michaux, S. Lessire, J. Douxfils, J.-M. Dogné, M. Bareille, G. Horlait, P. Bulpa, C. Chapelle, S. Laporte, S. Testa, H. Jacqmin, T. Lecompte, A. Dive and F. Mullier. Prothrombotic hemostasis Disturbances in Patients with Severe COVID-19: a Prospective Longitudinal Observational Cohort Study. Thromb Res. 2020; 197:20-23. [1] |
Value of the Data
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The data reported with individual time-courses during the ICU stay show the variability of hemostasis parameters over time and between individuals, suggesting varying thrombotic risks and the need for individualization of thrombotic prophylaxis, with frequent reassessments.
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They can benefit to all physicians and scientists dealing with COVID-19.
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These data will be helpful to design further prospective studies focusing on COVID-19 hemostasis disorders: which parameters to measure and at which frequency.
1. Data Description
Demographic and clinical characteristics of observed ICU patients are shown in Table 1. Values correspond to median (with interquartile and min-max ranges) for quantitative data and to number (percent) for qualitative data.
Table 1.
All patients(n=21) | |
---|---|
Age (years), median (IQR) | 60 [57–64] (48–74) |
Male gender, n (total) | 18 (21) |
BMI (kg/m²), median (IQR) | 30 [27–32] (21–42) |
Caucasian ethnicity, n (total) | 18 (21) |
Obesity (BMI ≥30 kg/m²), n (total) | 11 (21) |
Hypertension, n (total) | 11 (21) |
COPD, n (total) | 4 (21) |
Asthma, n (total) | 3 (21) |
CAD, n (total) | 3 (21) |
On arrival at the ICU | |
APACHE II, median (IQR) | 14 [12–20] (9–22) |
SOFA score, median (IQR) | 6 [4–8] (3–12) |
Time-interval between symptoms onset and ICU admission, median (IQR) | 9 [8–11] (4–15) |
PAFI, median (IQR) | 91 [67–135] (44–260) |
During ICU stay | |
ICU stay duration, median (IQR) | 15 (7–26) (5–28) |
Patients having received UFHa, n (total) | 13 (21) |
UFH daily dose (IU/kg/day), median (IQR) | 441 [338–587] (0–800) |
Patients having received LMWHa, n (total) | 19 (21) |
LMWH daily dose (IU/kg/day), median (IQR) | 100 [53–149] (0–230) |
Non-invasive ventilation, n (tot) | 3 (21) |
Invasive ventilation support, n (tot) | 19 (21) |
ECMO, n (tot) | 5 (21) |
Vasopressor use, n (tot) | 16 (21) |
New renal replacement therapy, n (tot) | 6 (21) |
Thrombotic complicationsb | 10 (21) |
Major bleeding according to the ISTHb | 6 (21) |
Death, n (tot) | 3 (21) |
Discharged from ICU at the end of observation period, n (tot) | 9 (21) |
Patients may have received UFH or LMWH at different periods of ICU stay.
See the companion paper for the descriptions of the events.
IQR, interquartile range; BMI, body mass index; COPD, chronic obstructive pulmonary disease; CAD, coronary artery disease; ICU, intensive care unit; IQR, interquartile range; APACHE II score, acute physiology and chronic health disease classification system II; SOFA, sepsis-related organ failure assessment; PAFI, PaO2/FiO2 ratio; UFH, unfractionated heparin; LWMH, low molecular weight heparin; ECMO, extracorporeal membrane oxygenation; ICU, intensive care unit.
Baseline (D0) was defined as ICU admission (in Namur or elsewhere; 11 patients were transferred from the ICU of another Belgian hospital), but the laboratory-monitoring period was restricted to the Namur ICU stay. Tests on D0 were often missing due to delays in patients’ inclusion.
Table 2 represents the changes over time of hemostasis parameters along ICU stay of 21 severe COVID-19 patients. Observation period has been arbitrarily subdivided into three time-intervals of 10 days starting from D1. For each patient and time-interval, parameters medians were calculated. Medians and interquartile ranges of patient's medians are presented for the three time-intervals. Minimum and maximum values observed are also represented. D-dimers plasma levels are expressed in fibrinogen equivalent units (FEU) and ‘reference ranges’ depicted correspond to DIC thresholds according to the ISTH definition with the reagents we used [2].
Table 2.
Variable and reference ranges | D1–D10 (n = 18) | D11–D20 (n = 15) | D21–D30 (n = 9) |
---|---|---|---|
CRP (mg/dL) <5 | 211 [160–267] (9–485) | 97 [63–126] (2–451) | 95 [64–114] (14–256) |
Primary hemostasis | |||
Platelet count (109/L) 150 to 450 | 246 [177–387] (73–701) | 337 [187–454] (89–672) | 252 [153–412] (87–583) |
vWF antigen (%) 50 to 160 | 438 [357–534] (204–803) | 476 [380–548] (161–846) | 475 [424–702] (211–795) |
vWF activity (%) 46 to 176 | 294 [228–452] (151–845) | 344 [280–400] (107–927) | 429 [383–676] (152–779) |
ADAMTS-13 (IU/mL) 0.4 to 1.3 | 0.61 [0.40–0.65] (0.13–0.86) | 0.45 [0.39–0.61] (0.24–0.83) | 0.45 [0.43–0.50] (0.41–0.62) |
Coagulation | |||
Prothrombin time (%) 75 to 100 | 81 [75–89] (28–100) | 80 [77–87] (51–100) | 80 [78–84] (62–100) |
Fibrinogen (mg/dL) 200 to 400 | 722 [588–820] (177–1122) | 680 [555–723] (64–985) | 631 [592–682] (198–851) |
Factor II (%) 70 to 120 | 82 [74–97] (34–126) | 88 [70–96] (30–113) | 94 [79–103] (37–119) |
Factor V (%) 70 to 120 | 127 [91–158] (21–218) | 140 [112–175] (64–245) | 126 [114–145] (42–299) |
Factor VIII (%) 60 to 150 | 292 [239–317] (100–522) | 326 [263–354] (99–603) | 333 [268–404] (128–576) |
AT (%) 80 to 120 | 91 [68–100] (33–131) | 82 [71–105] (51–130) | 92 [78–94] (53–107) |
Protein C activity (%) 70–120 | 85 [78–120] (46–169) | 113 [105–117] (51–178) | 107 [98–158] (90–187) |
Free protein S antigen (%) Men: 70 to 148 Women: 50 to 134 | 80 [65–124] (39–150) | 114 [88–129] (44–150) | 110 [96–149] (45–150) |
Total TFPI (ng/mL) 20.4 to 142 | 107 [82–168] (60–292) | 98 [90–158] (57–396) | 128 [92–140] (50–186) |
Free TFPI (ng/mL) 0.4 to 19.6 | 42 [28–75] (9–173) | 32 [22–83] (12–175) | 38 [23–57] (14–102) |
Thrombin generation lag time (ratio) 1.1 to 1.3 | 2.0 [1.5–2.4] (1.0–10.3) | 2.2 [1.7–3.0] (1.1–9.9) | 2.5 [1.9–3.3] (1.4–7.6) |
Thrombin generation time to peak (ratio) 1.2 to 1.3 | 1.7 [1.4–2.0] (1.0–6.5) | 1.8 [1.5–2.4] (1.0–6.5) | 2.0 [1.7–2.5] (1.1–5.1) |
Thrombin generation peak height (%) 45 to 66 | 78 [53–105] (13–139) | 67 [48–78] (21–137) | 54 [42–73] (19–174) |
Thrombin generation ETP (%) 59 to 80 | 111 [70–139] (23–208) | 81 [66–89] (37–210) | 73 [56–95] (31–158) |
Fibrinolysis | |||
D-dimers (ng/mL) ISTH criterion for DIC, ≥3500 (2 pts) or ≥11,100 (3 pts) [2] | 4860 [2336–12,260] (750–20,000) | 3425 [2557–4710] (540–13,750) | 3120 [1960–4420] (800–16,430) |
PAI-1 (AU/mL) <16 | 23.6 [20.3–25.4] (2.3–58.7) | 19.5 [16.5–28.8] (1.6–52.0) | 15.6 [13.9–57.2] (6.8–52.2) |
GFC (min) 30 to 60 | 57 [53–64] (31–240) | 55 [49–69] (34–240) | 57 [44–73] (37–240) |
CRP, C-reactive protein; vWF antigen, von Willebrand factor antigen; vWF activity, von Willebrand factor activity, ristocetin cofactor; ADAMTS-13 (also known as von Willebrand factor cleaving protease); TFPI, tissue factor pathway inhibitor; DIC, disseminated intravascular coagulopathy; t-PA, tissue-type plasminogen activator; PAI-1, plasminogen activator inhibitor; AU, arbitrary units; GFC, global fibrinolysis capacity (Lysis Timer instrument); ETP, endogenous thrombin potential.
Results of ST Genesia TGA are relative to reference plasma and expressed as ratios (temporal parameters) or percentages (thrombin concentration-related parameters).
The figures represent the changes over time of measured hemostasis parameters during the ICU stay of each of the 21 patients. Blue lines represent the reference range locally determined, or previously published under similar analytical conditions, or according to the manufacturer's (see figure legends). Stars represent the follow-up period of the patients; orange stars represent the day of diagnosis of a thrombotic complication (which might be delayed form the actual onset) (Fig. 1, Fig. 2, Fig. 3, Fig. 4, Fig. 5, Fig. 6, Fig. 7, Fig. 8, Fig. 9, Fig. 10, Fig. 11, Fig. 12, Fig. 13, Fig. 14, Fig. 15, Fig. 16, Fig. 17, Fig. 18, Fig. 19, Fig. 20, Fig. 21, Fig. 22).
2. Experimental Design, Materials and Methods
2.1. Setting
CHU UCL Namur (Godinne site, Yvoir, Belgium), a tertiary academic hospital.
2.2. Patients
All patients admitted to the intensive care unit (ICU) of the CHU UCL Namur for an RT-PCR confirmed severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) infection from March 27 to April 24, 2020 were considered for inclusion. Twenty-one patients were finally included, one patient being excluded because of major therapeutic limitation (i.e. refusal of tracheal intubation).
2.3. Clinical management
Patients’ characteristics were collected at first ICU admission. Patients were managed according to local standard of care. Anticoagulation guidelines from the Groupe d'Intérêt en Hémostase Périopératoire (GIHP) were implemented in Namur from April 2, 2020 [4]. Patients were screened for deep vein thrombosis (DVT) within a week after Namur ICU admission, and then once a week unless a thrombotic event occurred. Pulmonary embolism (as a matter of fact could be in situ arterial thrombosis) was diagnosed directly by contract CT scan or indirectly by transesophageal ultrasonography (for unstable patients that cannot be transferred safely to the Radiology Department). Bleeding events were defined as minor or major according to ISTH definitions [5].
2.4. Blood samples
Blood samples were collected from the arterial line as part of clinical patients’ care and at least once a day around 4a.m. Serum was prepared from plastic tubes containing alumina silicate as coagulation activator (Vacuette, Greiner Bio One, Kremsmünster, Austria), whole blood was collected in K2-ethylenediaminetetraceatic acid (EDTA) tubes (Vacuette, Greiner Bio One) and plasma was prepared from 109 mM citrate tubes (Vacuette, Greiner Bio One) using double centrifugation (1500 g, 15 min, room temperature). Plasma samples were frozen at -80 °C and thawed at 37 °C for 5 min immediately before analysis.
2.5. Laboratory tests
Laboratory tests were performed on 4a.m. samples whenever possible or on the temporally closest samples.
CRP levels were measured on a Vitros 5600 Integrated System (Ortho Clinical Diagnostics, Belgium) with CRP Gold Latex reagents (DiAgam, Ghislenghien, Belgium) and platelet count on a Sysmex XN-20 analyzer with Cellpack reagent (Sysmex Corporation, Kobe, Japan).
The following laboratory tests were performed with a STA-R Max (Stago, Asnières-sur-Seine) and reagents from Stago: prothrombin time (STA-NeoPTimal; expressed as percentage [6]), Clauss fibrinogen (STA-Liquid FIB), clotting factor II (STA-NeoPTimal and STA – Deficient II), V (STA-NeoPTimal and STA – Deficient V) and VIII (STA-CK Prest and STA – Immunodef VIII), antithrombin (STA-Stachrom ATIII), D-dimers (STA – LIATEST D-Di Plus), PAI-1 (STACHROM PAI-1), von Willebrand factor antigen (STA – LIATEST VWF:Ag), protein C activity (STA – Stachrom Protein C), free protein S antigen (STA-LIATEST Free Protein S), total (Asserachrom total TFPI) and free TFPI (Asserachrom free TFPI).
Thrombin generation was measured with ST Genesia and STG-ThromboScreen reagent (Stago) after neutralizing heparin with hexadimethrine bromide (25 μg/mL; polybrene, Sigma Aldrich, Saint-Louis, United States) [3,7]. Global fibrinolytic capacity was measured using the Lysis Timer instrument (Hyphen Biomed, Neuville-sur-Oise, France; SD Innovation, Frouard, France, respectively) with dedicated reagents (Hyphen Biomed) [8]. ADAMTS-13 activity was measured using the Technozym® ADAMTS-13 Activity ELISA kit (Technozym, Technoclone, Vienna, Austria). Von Willebrand activity was measured with an AcuStar analyser (Instrumentation Laboratory, Bedford, USA) and HemosIL AcuStar VWF:RCo reagent (Instrumentation Laboratory).
Most analyses were intended to be performed once a day whenever possible. Some analyses were purposely performed only every 5 days (i.e. vWF antigen and activity, ADAMTS-13, total and free TFPI, tissue-type plasminogen activator) or every other day (protein C activity, free protein S antigen). The percentage of days with available data for the whole observation period is represented in Table 3.
Table 3.
Parameter | Percentage of days with available data (%) |
---|---|
C-reactive protein | 97 |
Platelet count | 99 |
Prothrombin time | 85 |
Fibrinogen | 84 |
Factor II | 82 |
Factor V | 82 |
Factor VIII | 85 |
D-dimers | 84 |
Thrombin generation LT | 58 |
Thrombin generation ttP | 58 |
Thrombin generation pH | 58 |
Thrombin generation ETP | 58 |
Plasminogen activator inhibitor 1 | 84 |
Global fibrinolytic capacity | 83 |
Antithrombin activity | 84 |
Protein C activity | 44 |
Free protein S antigen | 44 |
Total TFPI | 33 |
Free TFPI | 33 |
Anti-Xa activity | 82 |
von Willebrand factor antigen | 21 |
von Willebrand factor activity | 21 |
ADAMTS-13 | 22 |
LT, lag time; ttP, time to peak, pH, peak height; ETP, endogenous thrombin potential; TFPI, tissue factor pathway inhibitor.
2.6. Analysis
Figures were performed in R (version 4.0.0) [9] using ggplot2 package (version 3.3.1).
Ethics Statement
The observation was performed in accordance with the Declaration of Helsinki and after approval of the Ethics Committee of the CHU UCL Namur (NUB: B0392020000031).
Declaration of Competing Interest
The authors declare that they have no known competing financial interests or personal relationships that have or could be perceived to have influenced the work reported in this article.
Acknowledgments
The authors would like to thank Professor Bernard Chatelain (Université catholique de Louvain) for providing very sound and helpful advice on the content of the manuscript. The authors would like also to thank Mrs Justine Baudar, Mrs Maité Guldenpfennig and Mr Philippe Devel for performing the experiments and Hyphen Biomed for providing the instrument and reagents for Global Fibrinolytic Activity assay (Lysis Timer).
This work was supported by the Belgian Fonds National de la Recherche Scientifique: ‘Anticoagulation fibrinolysis COVID19’ (reference: 40002796).
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