Abstract
Many lung cancer deaths result from relapses in distant organs, such as the brain or bones, after standard chemotherapy. For cancer cells to spread to other organs, they must survive as circulating tumor cells (CTCs) in blood vessels. Thus, reducing distant recurrence after chemotherapy requires simultaneously inhibiting drug resistance and CTC survival. Here, we investigated the molecular pathways and genes that are commonly altered in drug-resistant lung cancer cells and lung tumor spheroid (TS) cells. First, RNA sequencing was performed in drug-resistant cells and TS cells originating from H460 and A549 lung cancer cells. Bioinformatic pathway analysis showed that cell cycle-related pathways were downregulated in drug-resistant cells, and cholesterol biosynthesis-related pathways were upregulated in TS cells. Seizure-related 6 homolog-like 2 (SEZ6L2) was selected as a gene that was commonly upregulated in both drug-resistant cells and TS cells, and that showed elevated expression in samples from lung adenocarcinoma patients. Second, the protein expression of SEZ6L2 was analyzed by flow cytometry. The proportions of SEZ6L2 positive cells among both drug-resistant cells and TS cells was increased. Finally, as SEZ6L2 is a transmembrane protein with an extracellular region, the function of SEZ6L2 was disrupted by treatment with an anti-SEZ6L2 antibody. Treatment with the anti-SEZ6L2 antibody reduced drug resistance and TS formation. Overall, our data showed that SEZ6L2 plays an important role in drug resistance and TS formation and may be a therapeutic target for reducing distant recurrence of lung adenocarcinoma.
Keywords: lung adenocarcinoma, distant recurrence, drug resistance, circulating tumor cell, tumor spheroid, SEZ6L2
1. Introduction
Lung cancer is the leading cause of cancer deaths worldwide [1]. Overall, 85% of lung cancer patients are diagnosed with non-small cell lung cancer (NSCLC), and the two major NSCLC subtypes are lung adenocarcinoma (LUAD) and lung squamous cell carcinoma [2,3]. To date, many treatments have been developed for lung cancer, including surgery, chemotherapy, and radiation therapy. However, despite improvements in lung cancer treatment, many patients with NSCLC experience recurrence after surgery or chemotherapy [4,5,6]. Post-recurrence survival is low, and recurrence is associated with a poor prognosis [7,8]. Approximately 65% of NSCLC patients will develop persistent disease or distant metastasis to the brain or bone after surgery and postoperative adjuvant therapy [7,9,10].
The present study aimed to explore strategies to prevent tumor relapse in distant organs during and after chemotherapy. After drug treatment, only drug-resistant cancer cells are viable and can metastasize to other distant sites through blood flow. In the bloodstream, cancer cells must overcome the harsh environment to survive as circulating tumor cells (CTCs) [11]. The most important factor in the survival of CTCs is the survival in the suspended state, and tumor spheroids (TSs) are widely used as in vitro models to study cell survival in the suspended state [12,13,14]. Because molecular changes are a major factor leading to distant metastasis and resistance to lung cancer treatment [15,16,17], we investigated the common molecular features of both drug resistance and metastasis by RNA sequencing. To analyze drug resistance, we used the survived cells after treatment with three drugs (cisplatin, paclitaxel, and doxorubicin), and to analyze metastasis, we cultured TS cells in the H460 and A549 cell lines. We analyzed the RNA sequencing data and investigated gene expression profiles common to both drug resistance and metastasis.
Based on the RNA sequencing results, we focused on seizure-related 6 homolog-like 2 (SEZ6L2), which is a type 1 transmembrane protein. SEZ6L2 belongs to the SEZ6 family, which is composed of SEZ6, SEZ6L, and SEZ6L2 [18] and is upregulated in various cancers compared to the matched normal samples according to GEPIA2 (Gene Expression Profiling Interactive Analysis) webserver (http://gepia2.cancer-pku.cn/). Moreover, SEZ6L2 has been reported as a prognostic marker for hepatocellular carcinoma [18] and found to have increased expression in ovarian cancer [19]. Previous research on lung cancer showed shorter survival times in patients with tumors exhibiting high SEZ6L2 expression compared with no SEZ6L2 expression, indicating that SEZ6L2 may be a novel prognostic marker for lung cancer [20]. However, the roles of SEZ6L2 in drug resistance and metastasis in lung cancer remain unclear.
In this study, we confirmed that SEZ6L2 is upregulated in both drug-resistant cells and TS cells. Furthermore, we showed that inhibition of SEZ6L2 via treatment with an anti-SEZ6L2 antibody reduced drug resistance and TS formation, suggesting that anti-SEZ6L2 antibody therapy may be an option for reducing tumor relapse after chemotherapy in LUAD.
2. Experimental Section
2.1. Cell Culture and Reagents
The human LUAD cell lines H460 and A549 were purchased from the Korean Cell Line Bank. H460 and A549 cells were cultured in RPMI medium (#SH30027.01; HyClone, Logan, UT, USA) supplemented with 10% heat-inactivated fetal bovine serum (#SH30084.03; HyClone) and 1% penicillin/streptomycin (#15140-122; Invitrogen, San Diego, CA, USA) at 37 °C in humidified incubators containing 5% CO2. Cell lines were authenticated and regularly checked for Mycoplasma at the Genomics Core Facility (National Cancer Center, Gyeonggi-do, South Korea), as described previously [21].
TS cells were cultured according to the ex vivo CTC culture method described previously [22] with some modifications. Briefly, H460 and A549 cells were cultured in TS culture medium on plates coated with poly (2-hydroxyethyl methacrylate) (#P3932; Sigma–Aldrich, St. Louis, MO, USA) at 37 °C in a humidified incubator with 5% CO2. The TS culture medium consisted of RPMI medium supplemented with 1× B27 (#17504-044; Invitrogen), 20 ng/mL basic fibroblast growth factor (#100-18B; PEPROTECH, Cranbury, NJ, USA), 20 ng/mL epidermal growth factor (#E9644; Sigma–Aldrich), 1% penicillin/streptomycin, and Cellmaxin plus (#C3319-020; GenDEPOT, Austin, TX, USA). TS cells were passaged at least three times for stabilization.
For drug treatment, cisplatin (#C2210000) was purchased from Sigma–Aldrich, paclitaxel (#1097) from TOCRIS (Bristol, UK), and doxorubicin (#S1208) from Selleckchem (Houston, TX, USA). H460 and A549 cells were plated, and drug treatments were added the next day. After 3 days of drug treatment, culture media were exchanged with complete fresh media. After 3 additional days, whole cells were re-plated into another dish.
The anti-SEZ6L2 antibody (#PA5-24862) was purchased from Invitrogen, normal rabbit IgG (#12-370) was purchased from EMD Millipore (Billerica, MA, USA), and goat anti-rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody Alexa Fluor 488 (#A-11008) was purchased from Invitrogen.
2.2. RNA Sequencing and Data Analysis
RNA sequencing was performed according to a method described previously [23,24]. Preparation of the RNA library and sequencing were performed using HiSeq 2000 and HiSeq 2500 sequencing systems (Illumina, San Diego, CA, USA) by Macrogen (Seoul, Korea). The RNA sequencing data were deposited in the Gene Expression Omnibus (GEO) database under accession number GSE158638 and GSE158640. RNA sequencing data were analyzed by core analysis using ingenuity pathway analysis (IPA; QIAGEN, Redwood City, CA, USA). Differentially expressed genes (DEGs) were filtered using a fold-change expression cut-off of 2. A heatmap of the DEGs was created using MultiExperiment Viewer version 4.9.0 (mev.tm4.org). DEGs were analyzed based on canonical pathways and upstream regulators using IPA.
2.3. Flow Cytometry
The populations of SEZ6L2-positive cells among H460 and A549 cells were evaluated by flow cytometry using an anti-SEZ6L2 antibody. Cells were serially stained with the anti-SEZ6L2 antibody and goat anti-rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody Alexa Fluor 488. Samples were analyzed at the Flow Cytometry Core Facility (National Cancer Center) using FACSVerse (BD Biosciences, San Jose, CA, USA), as described previously [25].
2.4. TS Formation and Antibody Treatment
Single-cell suspensions of H460 cells were plated into 96-well ultra-low attachment plates in the TS culture medium. In total, 1000 cells were plated and incubated with rabbit IgG or anti-SEZ6L2 antibody at the indicated concentration for at least 7 days. After antibody incubation, whole-cell images were obtained using the Cytation 3 cell imaging reader (BioTek, Winooski, VT, USA) and analyzed using ImageJ, as described previously [26]. TS cells with diameters of more than 10 μm were counted.
2.5. Statistical Analysis
Statistical analysis was performed as reported previously [21]. The data were presented as means ± standard deviation, and p-values were calculated using the Student’s t-test calculator (http://graphpad.com/quickcalcs/). All data were representative of at least three separate experiments.
3. Results
3.1. Characterization of Gene Expression Changes in Drug-Resistant Cells
After chemotherapy, a small number of drug-resistant cells survive, and these cells exhibit drug resistance [27]. Thus, to select drug-resistant cells, the LUAD cell line H460 was treated with cisplatin, paclitaxel, and doxorubicin, which are widely used drugs for cancer treatment. As cancer cells continue to die for a period after cessation of the anticancer drug treatment (Figure 1A, right), the culture medium was exchanged for fresh medium 3 days after treatment with the anticancer drugs, and the cells were then cultured for an additional 3 days. After re-plating, the attached cells were considered drug-resistant surviving cells (Figure 1A). Whole-cell mRNA expression levels of parental, cisplatin-resistant (CR), paclitaxel-resistant (PR), and doxorubicin-resistant (DR) H460 cells were analyzed by RNA sequencing. A total of 1000–1200 genes were differentially expressed by more than twofold between the parental and drug-resistant H460 cells (Figure 1B). DEGs between the parental and CR A549 cells reported previously [27] were also analyzed (Figure 1B). A total of 530 DEGs were common in the CR, PR, and DR H460 cells and CR A549 cells relative to the parental cells (Figure 1C, left). Canonical pathway analysis of these common DEGs by IPA showed that cell-cycle-related pathways were generally downregulated (Figure 1C, middle), which is consistent with a previous report that the proliferation of drug-resistant cells is inhibited [27]. Meanwhile, the nucleotide excision repair (NER) pathway, which is closely involved in drug resistance [28], was generally upregulated (Figure 1C, middle). Upstream regulators that control the expression of common DEGs were also analyzed using IPA. Among the upstream regulators, annexin A2 (ANXA2) was repressed, and switch/sucrose non-fermentable (SWI/SNF) related regulator of chromatin (SMARCA4, also known as BRG1), tumor protein 53 (TP53), tumor necrosis factor (TNF), and polymeraseassociated factor1 (PAF1) homolog, Paf1/RNA polymerase II complex component (PAF1) were activated (Figure 1C, right).
3.2. Characterization of Gene Expression Changes in TS Cells
For cancer cells to recur in other organs, they must be able to survive in a suspended state in blood vessels. To obtain TS cells, H460 and A549 cells were cultured according to a previously reported ex vivo CTC culture method [22] with some modification. To distinguish TS cells from cell aggregates and to stabilize them, TS cells were passaged three times prior in preparation for RNA sequencing (Figure 2A). In total, 330 and 810 genes were differentially expressed by more than twofold, respectively, in H460 and A549 TS cells compared with the corresponding cells cultured under two-dimensional (2D) conditions (Figure 2B). Of those genes, 139 were common DEGs between the 2D-cultured cells and both the H460 and A549 TS cells (Figure 2C, left). Canonical pathway analysis of these common DEGs using IPA showed that cholesterol biosynthesis-related pathways were generally upregulated (Figure 2C, middle). Upstream regulator analysis showed that euchromatic histone lysine methyltransferase 1 (EHMT1), SMARCA4, and PAF1 were activated, whereas jagged canonical Notch ligand 2 (JAG2) and transforming growth factor beta 1 (TGFB1) were repressed (Figure 2C, right).
3.3. SEZ6L2 Is Commonly Upregulated in Drug-Resistant Cells and TS Cells
Initially, we aimed to discover common pathways and upstream regulators governing drug resistance and TS formation to identify anticancer strategies that simultaneously inhibit both processes. However, canonical pathway analysis showed no common pathways between drug-resistant cells and TS cells, while among the upstream regulators, only SMARCA4 and PAF1 were commonly activated (Figure 1C and Figure 2C). As the mRNA expression levels of SMARCA4 and PAF1 were not significantly altered in drug-resistant cells and TS cells compared with control cells (data not shown), activation of SMARCA4 and PAF1 appears to occur at the post-transcriptional level. Therefore, we searched for genes with increased expression in both drug-resistant cells and TS cells. Only three genes, stanniocalcin 1 (STC1), chondroitin polymerizing factor (CHPF), and seizure-related 6 homolog like 2 (SEZ6L2), were upregulated in all drug-resistant cells and TS cells relative to the corresponding control cells (Figure 3A). The expression levels of these three genes were compared between LUAD patients and matched normal samples by the GEPIA2 (Gene Expression Profiling Interactive Analysis) webserver. As only SEZ6L2 was upregulated in tumors compared with normal samples (Figure 3B), we focused on SEZ6L2. First, we investigated whether the SEZ6L2 protein level was also increased in drug-resistant cells and TS cells. SEZ6L2 is expressed on the cell surface [18,20], and therefore flow cytometric analysis was performed using an anti-SEZ6L2 antibody. SEZ6L2 was detected in less than 4% of H460 parental cells, whereas more than 10% of CR H460 cells were positive for SEZ6L2 (Figure 3C). In addition, in both H460 and A549 cells, the population of SEZ6L2-positive cells among TS cells was increased by twofold compared with 2D cultures (Figure 3D). These results suggest that the population of SEZ6L2-positive cells increases during the development of drug resistance and TS formation.
3.4. Anti-SEZ6L2 Antibody Treatment Inhibits Drug Resistance and TS Formation
Next, we aimed to determine whether SEZ6L2 plays a functional role in the acquisition of drug resistance or the formation of TS cells. As SEZ6L2 is a type 1 transmembrane protein with Sushi domains and complement C1r/C1s, Uegf, Bmp1 (CUB) domains in the extracellular portion of the protein [29,30], an anti-SEZ6L2 antibody can be used to neutralize the function of SEZ6L2. First, as a result of the treatment of H460 cells with normal rabbit IgG and anti-SEZ6L2 antibody, it was confirmed that none of them had an effect on cell proliferation in 2D culture (Figure 4A). Next, H460 cells were treated with cisplatin according to the experimental scheme shown in Figure 1A in the presence of an anti-SEZ6L2 antibody or normal rabbit IgG as a control. Enumeration of viable cells showed that treatment with an anti-SEZ6L2 antibody significantly reduced the number of surviving drug-resistant cells (Figure 4B). During TS culture with H460 cells, the addition of the anti-SEZ6L2 antibody significantly reduced TS formation in a dose-dependent manner, whereas the addition of normal rabbit IgG did not (Figure 4C). These results suggest that anti-SEZ6L2 antibody treatment inhibits drug resistance and TS formation.
Overall, these results suggest that SEZ6L2 is upregulated in drug-resistant cells and TS cells and plays functional roles in drug-resistant cell survival and TS formation in LUAD. These results also suggest that drugs targeting SEZ6L2, including antibody therapies, may be used to prevent distant recurrence of LUAD (Figure 5).
4. Discussion
Despite great achievements in lung cancer therapy over recent decades, recurrence in distant organs is a major cause of treatment failure, and drug resistance and metastasis contribute to distant recurrence. Therefore, we aimed to define the molecular characteristics of distant recurrence by investigating gene expression changes in drug-resistant cells and TS cells in LUAD. We performed RNA sequencing using drug-resistant cells and TS cells derived from H460 and A549 cells. In the drug-resistant cells, the cell-cycle-related pathway was depressed, and the senescence pathway was activated (Figure 1C), in accordance with previous reports that chemotherapy leads to cell cycle slowdown and cellular senescence [31,32]. Activation of the nucleotide excision repair (NER) pathway is also unsurprising, given its close relationship with drug resistance [28]. The activated glycoprotein VI platelet pathway has no reported relationship with drug resistance, and further studies of this pathway are needed. In TS cells, all activated pathways are related to cholesterol biosynthesis (Figure 2C). This result is in line with the finding that cholesterol biosynthesis is essential for tumorigenesis, cancer stemness, cancer metastasis, and 3D culture of cancer stem cells [33,34,35,36,37], but more research into the role of cholesterol biosynthesis in lung TS cells is needed. Through upstream analysis, we found that SMARCA4 and PAF1 are commonly activated upstream regulators in both drug-resistant cells and TS cells (Figure 1C and Figure 2C). SMARCA4 is a transcription regulator in the chromatin remodeling complex, and PAF1 is a component of polymerase associated factor 1 complex, which regulates transcription elongation via RNA polymerase II [38,39]. In previous studies related to lung cancer, both of these regulators have been identified as prognostic markers of NSCLC [40,41]. However, SMARCA4 and PAF1 appear to be activated at the post-transcriptional level, and, therefore, elaborate molecular studies of the mechanisms underlying their activity are required for the development of therapeutics targeting them.
Based on the RNA sequencing data, we found that SEZ6L2 was commonly upregulated in both drug-resistant cells and TS cells (Figure 3A). The mRNA expression of SEZ6L2 was also elevated in LUAD patient samples from The Cancer Genome Atlas (TCGA) (Figure 3B). We confirmed that the SEZ6L2 protein was expressed in a small percentage of parental 2D-cultured cells, but this proportion increased during the development of drug-resistant cells or TS formation (Figure 3C,D). As SEZ6L2 is located on the cell surface, its function may be perturbed by an anti-SEZ6L2 antibody. We found that anti-SEZ6L2 antibody treatment reduced the number of cells surviving after drug treatment and TS formation (Figure 4). Recently, antibody therapy has become a predominant class of new drugs used for the treatment of diseases, including cancer, due to the high specificity of these treatments [42,43]. In addition, antibody engineering has advanced dramatically since the first monoclonal antibody was approved by the United States Food and Drug Administration (US FDA) in 1986. For example, Nivolumab, which was the second best-selling monoclonal antibody drug in 2018, targets the PD-1 receptor and has been approved by the US FDA for cancers, including melanoma and NSCLC [43]. Likewise, with improved antibody engineering and further research on SEZ6L2, drug resistance and metastasis could likely be suppressed in LUAD by anti-SEZ6L2 antibody therapy.
It is important to identify the critical factors for CTC survival, as it is essential to survive as CTCs in blood vessels for the primary cancer to spread to other organs. However, there are several limitations in studying the function of CTC in vitro. Currently, ex vivo CTC culture methods derived from patients and patient-derived xenografts have been reported [22,44,45,46], but no in vitro CTC culture methods have been reported. TS culture shows intermediate complexity between 2D in vitro cell culture and 3D in vivo states [13,47] and is similar to CTC culture in that cells grow in a suspended state. In this study, to mimic the characteristics of CTC in vitro, lung cancer cell lines were TS cultured in ex vivo CTC medium. However, since the TS cultured cells in this study are still thought to be close to the previously reported TS than CTC, it is necessary to develop a new method to study CTC in vitro. Nonetheless, the finding that SEZ6L2 is important for survival in suspended culture conditions still suggests that SEZ6L2 will be important in the process of distant cancer metastasis.
In this study, we show a functional role of SEZ6L2 in LUAD, but its detailed molecular mechanism has not been fully explored to date. Some of the functions and mechanisms of SEZ6L2 in cancer and other diseases can be inferred through studies of other proteins in the SEZ6 family. Structurally, all SEZ6 family proteins are transmembrane proteins consisting of Sushi domains and CUB (complement C1r/C1s, Uegf, Bmp1) domains [29,30]. The Sushi domain (also known as complement control protein (CCP) domain or short consensus repeat) and CUB domain in the extracellular regions are related to the complement system, cell adhesion, signal transduction, and protein–protein interactions [48,49,50]. Previous studies of and structural similarities among SEZ6 family members suggest that the extracellular region of SEZ6L2 may be associated with cell-to-cell interactions or signal transduction in LUAD, but further investigation is needed. To conclude, we confirmed that SEZ6L2 was upregulated and played important roles in LUAD drug-resistant cells and TS cells. Our results suggest that anti-SEZ6L2 antibody treatment may be a promising anticancer therapy that reduces the recurrence of lung cancer in distant organs, such as the brain and bones.
Acknowledgments
We would like to thank Tae Sik Kim of the Flow Cytometry Core Facility and Jung-Ah Hwang of the Genomics Core Facility in the National Cancer Center for their expert assistance.
Author Contributions
Conceptualization, H.J. and Y.-N.K.; methodology, H.J.; investigation, J.-S.L., H.Y.K., and B.W., data curation, J.-S.L. and H.Y.K.; writing—original draft preparation, J.-S.L., H.Y.K., and H.J.; writing—review and editing, S.W.K., Y.-N.K., and H.J.; visualization, J.-S.L. and H.Y.K.; supervision, H.J.; funding acquisition, H.J. All authors have read and agreed to the published version of the manuscript.
Funding
This research was funded by the National Cancer Center, Korea, grant number NCC-1810292, 1910033 and 2010272.
Conflicts of Interest
The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.
Footnotes
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.
References
- 1.Siegel R.L., Miller K.D., Jemal A. Cancer statistics, 2020. CA Cancer J. Clin. 2020;70:7–30. doi: 10.3322/caac.21590. [DOI] [PubMed] [Google Scholar]
- 2.Herbst R.S., Heymach J.V., Lippman S.M. Lung cancer. N. Engl. J. Med. 2008;359:1367–1380. doi: 10.1056/NEJMra0802714. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Relli V., Trerotola M., Guerra E., Alberti S. Distinct lung cancer subtypes associate to distinct drivers of tumor progression. Oncotarget. 2018;9:35528–35540. doi: 10.18632/oncotarget.26217. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Uramoto H., Tanaka F. Recurrence after surgery in patients with NSCLC. Transl. Lung Cancer Res. 2014;3:242–249. doi: 10.3978/j.issn.2218-6751.2013.12.05. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Valdes M., Nicholas G., Goss G.D., Wheatley-Price P. Chemotherapy in recurrent advanced non-small-cell lung cancer after adjuvant chemotherapy. Curr. Oncol. 2016;23:386–390. doi: 10.3747/co.23.3191. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Hotta K., Matsuo K., Ueoka H., Kiura K., Tabata M., Tanimoto M. Meta-analysis of randomized clinical trials comparing Cisplatin to Carboplatin in patients with advanced non-small-cell lung cancer. J. Clin. Oncol. 2004;22:3852–3859. doi: 10.1200/JCO.2004.02.109. [DOI] [PubMed] [Google Scholar]
- 7.Hung J.J., Yeh Y.C., Jeng W.J., Chien H.C., Wu Y.C., Chou T.Y., Hsu W.H. Prognostic Factors of Survival after Recurrence in Patients with Resected Lung Adenocarcinoma. J. Thorac. Oncol. 2015;10:1328–1336. doi: 10.1097/JTO.0000000000000618. [DOI] [PubMed] [Google Scholar]
- 8.Wang C., Wu Y., Shao J., Liu D., Li W. Clinicopathological variables influencing overall survival, recurrence and post-recurrence survival in resected stage I non-small-cell lung cancer. BMC Cancer. 2020;20:150. doi: 10.1186/s12885-020-6621-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Yan X., Jiao S.C., Zhang G.Q., Guan Y., Wang J.L. Tumor-associated immune factors are associated with recurrence and metastasis in non-small cell lung cancer. Cancer Gene Ther. 2017;24:57–63. doi: 10.1038/cgt.2016.40. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Shah N., Liu Z., Tallman R.M., Mohammad A., Sprowls S.A., Saralkar P.A., Vickers S.D., Pinti M.V., Gao W., Lockman P.R. Drug resistance occurred in a newly characterized preclinical model of lung cancer brain metastasis. BMC Cancer. 2020;20:292. doi: 10.1186/s12885-020-06808-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Potdar P., Lotey N. Role of circulating tumor cells in future diagnosis and therapy of cancer. J. Cancer Metastasis Treat. 2015;1 doi: 10.4103/2394-4722.158803. [DOI] [Google Scholar]
- 12.Weiswald L.B., Bellet D., Dangles-Marie V. Spherical cancer models in tumor biology. Neoplasia. 2015;17:1–15. doi: 10.1016/j.neo.2014.12.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Hamilton G., Rath B. Role of circulating tumor cell spheroids in drug resistance. Cancer Drug Resist. 2019 doi: 10.20517/cdr.2019.47. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Menyailo M.E., Tretyakova M.S., Denisov E.V. Heterogeneity of Circulating Tumor Cells in Breast Cancer: Identifying Metastatic Seeds. Int. J. Mol. Sci. 2020;21:1696. doi: 10.3390/ijms21051696. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Lee K.Y., Shueng P.W., Chou C.M., Lin B.X., Lin M.H., Kuo D.Y., Tsai I.L., Wu S.M., Lin C.W. Elevation of CD109 promotes metastasis and drug resistance in lung cancer via activation of EGFR-AKT-mTOR signaling. Cancer Sci. 2020;111:1652–1662. doi: 10.1111/cas.14373. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Ferrer I., Zugazagoitia J., Herbertz S., John W., Paz-Ares L., Schmid-Bindert G. KRAS-Mutant non-small cell lung cancer: From biology to therapy. Lung Cancer. 2018;124:53–64. doi: 10.1016/j.lungcan.2018.07.013. [DOI] [PubMed] [Google Scholar]
- 17.Kastelijn E.A., de Langen A.J., Peters B.J.M. Treatment of oncogene-driven non-small cell lung cancer. Curr. Opin. Pulm. Med. 2019;25:300–307. doi: 10.1097/MCP.0000000000000572. [DOI] [PubMed] [Google Scholar]
- 18.Wang L., Ling X., Zhu C., Zhang Z., Wang Z., Huang S., Tang Y., He S., Guo Z., He X. Upregulated Seizure-Related 6 Homolog-Like 2 Is a Prognostic Predictor of Hepatocellular Carcinoma. Dis. Markers. 2020;2020:7318703. doi: 10.1155/2020/7318703. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Dufresne J., Bowden P., Thavarajah T., Florentinus-Mefailoski A., Chen Z.Z., Tucholska M., Norzin T., Ho M.T., Phan M., Mohamed N., et al. The plasma peptides of ovarian cancer. Clin. Proteomics. 2018;15:41. doi: 10.1186/s12014-018-9215-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Ishikawa N., Daigo Y., Takano A., Taniwaki M., Kato T., Tanaka S., Yasui W., Takeshima Y., Inai K., Nishimura H., et al. Characterization of SEZ6L2 cell-surface protein as a novel prognostic marker for lung cancer. Cancer Sci. 2006;97:737–745. doi: 10.1111/j.1349-7006.2006.00258.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Bong S.M., Bae S.H., Song B., Gwak H., Yang S.W., Kim S., Nam S., Rajalingam K., Oh S.J., Kim T.W., et al. Regulation of mRNA export through API5 and nuclear FGF2 interaction. Nucleic Acids Res. 2020;48:6340–6352. doi: 10.1093/nar/gkaa335. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Yu M., Bardia A., Aceto N., Bersani F., Madden M.W., Donaldson M.C., Desai R., Zhu H., Comaills V., Zheng Z., et al. Cancer therapy. Ex vivo culture of circulating breast tumor cells for individualized testing of drug susceptibility. Science. 2014;345:216–220. doi: 10.1126/science.1253533. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Kim H.Y., Kim D.K., Bae S.H., Gwak H., Jeon J.H., Kim J.K., Lee B.I., You H.J., Shin D.H., Kim Y.H., et al. Farnesyl diphosphate synthase is important for the maintenance of glioblastoma stemness. Exp. Mol. Med. 2018;50:1–12. doi: 10.1038/s12276-018-0166-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Poojan S., Bae S.H., Min J.W., Lee E.Y., Song Y., Kim H.Y., Sim H.W., Kang E.K., Kim Y.H., Lee H.O., et al. Cancer cells undergoing epigenetic transition show short-term resistance and are transformed into cells with medium-term resistance by drug treatment. Exp. Mol. Med. 2020;52:1102–1115. doi: 10.1038/s12276-020-0464-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Kim D.-K., Song B., Han S., Jang H., Bae S.-H., Kim H.Y., Lee S.-H., Lee S., Kim J.K., Kim H.-S., et al. Phosphorylation of OCT4 Serine 236 Inhibits Germ Cell Tumor Growth by Inducing Differentiation. Cancers. 2020;12:2601. doi: 10.3390/cancers12092601. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Kim H.Y., Lee B.I., Jeon J.H., Kim D.K., Kang S.G., Shim J.K., Kim S.Y., Kang S.W., Jang H. Gossypol Suppresses Growth of Temozolomide-Resistant Glioblastoma Tumor Spheres. Biomolecules. 2019;9:595. doi: 10.3390/biom9100595. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Jeon J.H., Kim D.K., Shin Y., Kim H.Y., Song B., Lee E.Y., Kim J.K., You H.J., Cheong H., Shin D.H., et al. Migration and invasion of drug-resistant lung adenocarcinoma cells are dependent on mitochondrial activity. Exp. Mol. Med. 2016;48:e277. doi: 10.1038/emm.2016.129. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Rosell R., Taron M., Barnadas A., Scagliotti G., Sarries C., Roig B. Nucleotide excision repair pathways involved in Cisplatin resistance in non-small-cell lung cancer. Cancer Control. 2003;10:297–305. doi: 10.1177/107327480301000404. [DOI] [PubMed] [Google Scholar]
- 29.Shimizu-Nishikawa K., Kajiwara K., Kimura M., Katsuki M., Sugaya E. Cloning and expression of SEZ-6, a brain-specific and seizure-related cDNA. Brain Res. Mol. Brain Res. 1995;28:201–210. doi: 10.1016/0169-328X(94)00203-Q. [DOI] [PubMed] [Google Scholar]
- 30.Gunnersen J.M., Kim M.H., Fuller S.J., De Silva M., Britto J.M., Hammond V.E., Davies P.J., Petrou S., Faber E.S., Sah P., et al. Sez-6 proteins affect dendritic arborization patterns and excitability of cortical pyramidal neurons. Neuron. 2007;56:621–639. doi: 10.1016/j.neuron.2007.09.018. [DOI] [PubMed] [Google Scholar]
- 31.Shah M.A., Schwartz G.K. Cell cycle-mediated drug resistance: An emerging concept in cancer therapy. Clin. Cancer Res. 2001;7:2168–2181. [PubMed] [Google Scholar]
- 32.Guillon J., Petit C., Toutain B., Guette C., Lelievre E., Coqueret O. Chemotherapy-induced senescence, an adaptive mechanism driving resistance and tumor heterogeneity. Cell Cycle. 2019;18:2385–2397. doi: 10.1080/15384101.2019.1652047. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Ehmsen S., Pedersen M.H., Wang G., Terp M.G., Arslanagic A., Hood B.L., Conrads T.P., Leth-Larsen R., Ditzel H.J. Increased Cholesterol Biosynthesis Is a Key Characteristic of Breast Cancer Stem Cells Influencing Patient Outcome. Cell Rep. 2019;27:3927–3938.e6. doi: 10.1016/j.celrep.2019.05.104. [DOI] [PubMed] [Google Scholar]
- 34.Lee H.J., Li J., Vickman R.E., Li J., Liu R., Durkes A.C., Elzey B.D., Yue S., Liu X., Ratliff T.L., et al. Cholesterol Esterification Inhibition Suppresses Prostate Cancer Metastasis by Impairing the Wnt/β-catenin Pathway. Mol. Cancer Res. 2018;16:974–985. doi: 10.1158/1541-7786.MCR-17-0665. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Wang B., Rong X., Palladino E.N.D., Wang J., Fogelman A.M., Martín M.G., Alrefai W.A., Ford D.A., Tontonoz P. Phospholipid Remodeling and Cholesterol Availability Regulate Intestinal Stemness and Tumorigenesis. Cell Stem Cell. 2018;22:206–220.e4. doi: 10.1016/j.stem.2017.12.017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Chan L.K., Wai-Hung Ho D., Kam C.S., Yung-Tuen Chiu E., Lai-Oi Lo I., Tsz-Wai Yau D., Tin-Yan Cheung E., Tang C.N., Wai-Lun Tang V., Kin-Wah Lee T., et al. RSK2-inactivating mutations potentiate MAPK signaling and support cholesterol metabolism in hepatocellular carcinoma. J. Hepatol. 2020 doi: 10.1016/j.jhep.2020.08.036. [DOI] [PubMed] [Google Scholar]
- 37.Huang B., Song B.L., Xu C. Cholesterol metabolism in cancer: Mechanisms and therapeutic opportunities. Nat. Metab. 2020;2:132–141. doi: 10.1038/s42255-020-0174-0. [DOI] [PubMed] [Google Scholar]
- 38.Khavari P.A., Peterson C.L., Tamkun J.W., Mendel D.B., Crabtree G.R. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature. 1993;366:170–174. doi: 10.1038/366170a0. [DOI] [PubMed] [Google Scholar]
- 39.Kim J., Guermah M., Roeder R.G. The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS. Cell. 2010;140:491–503. doi: 10.1016/j.cell.2009.12.050. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Bell E.H., Chakraborty A.R., Mo X., Liu Z., Shilo K., Kirste S., Stegmaier P., McNulty M., Karachaliou N., Rosell R., et al. SMARCA4/BRG1 Is a Novel Prognostic Biomarker Predictive of Cisplatin-Based Chemotherapy Outcomes in Resected Non-Small Cell Lung Cancer. Clin. Cancer Res. 2016;22:2396–2404. doi: 10.1158/1078-0432.CCR-15-1468. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Karmakar S., Dey P., Vaz A.P., Bhaumik S.R., Ponnusamy M.P., Batra S.K. PD2/PAF1 at the Crossroads of the Cancer Network. Cancer Res. 2018;78:313–319. doi: 10.1158/0008-5472.CAN-17-2175. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Scott A.M., Wolchok J.D., Old L.J. Antibody therapy of cancer. Nat. Rev. Cancer. 2012;12:278–287. doi: 10.1038/nrc3236. [DOI] [PubMed] [Google Scholar]
- 43.Lu R.M., Hwang Y.C., Liu I.J., Lee C.C., Tsai H.Z., Li H.J., Wu H.C. Development of therapeutic antibodies for the treatment of diseases. J. Biomed. Sci. 2020;27:1. doi: 10.1186/s12929-019-0592-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Gkountela S., Castro-Giner F., Szczerba B.M., Vetter M., Landin J., Scherrer R., Krol I., Scheidmann M.C., Beisel C., Stirnimann C.U., et al. Circulating Tumor Cell Clustering Shapes DNA Methylation to Enable Metastasis Seeding. Cell. 2019;176:98–112.e14. doi: 10.1016/j.cell.2018.11.046. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Ebright R.Y., Lee S., Wittner B.S., Niederhoffer K.L., Nicholson B.T., Bardia A., Truesdell S., Wiley D.F., Wesley B., Li S., et al. Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis. Science. 2020;367:1468–1473. doi: 10.1126/science.aay0939. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Schleich K., Kase J., Dorr J.R., Trescher S., Bhattacharya A., Yu Y., Wailes E.M., Fan D.N.Y., Lohneis P., Milanovic M., et al. H3K9me3-mediated epigenetic regulation of senescence in mice predicts outcome of lymphoma patients. Nat. Commun. 2020;11:3651. doi: 10.1038/s41467-020-17467-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Sutherland R.M. Cell and environment interactions in tumor microregions: The multicell spheroid model. Science. 1988;240:177–184. doi: 10.1126/science.2451290. [DOI] [PubMed] [Google Scholar]
- 48.Ojha H., Ghosh P., Singh Panwar H., Shende R., Gondane A., Mande S.C., Sahu A. Spatially conserved motifs in complement control protein domains determine functionality in regulators of complement activation-family proteins. Commun. Biol. 2019;2:290. doi: 10.1038/s42003-019-0529-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Qiu W.Q., Luo S., Ma S.A., Saminathan P., Li H., Gunnersen J., Gelbard H.A., Hammond J.W. The Sez6 family inhibits complement at the level of the C3 convertase. bioRxiv. 2020 doi: 10.1101/2020.09.11.292623. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Nash A., Aumann T.D., Pigoni M., Lichtenthaler S.F., Takeshima H., Munro K.M., Gunnersen J.M. Lack of Sez6 Family Proteins Impairs Motor Functions, Short-Term Memory, and Cognitive Flexibility and Alters Dendritic Spine Properties. Cereb. Cortex. 2020;30:2167–2184. doi: 10.1093/cercor/bhz230. [DOI] [PubMed] [Google Scholar]