Nucleic Acids Analysis

Yongxi Zhao; Xiaolei Zuo; Qian Li; Feng Chen; Yan-Ru Chen; Jinqi Deng; Da Han; Changlong Hao; Fujian Huang; Yanyi Huang; Guoliang Ke; Hua Kuang; Fan Li; Jiang Li; Min Li; Na Li; Zhenyu Lin; Dingbin Liu; Juewen Liu; Libing Liu; Xiaoguo Liu; Chunhua Lu; Fang Luo; Xiuhai Mao; Jiashu Sun; Bo Tang; Fei Wang; Jianbin Wang; Lihua Wang; Shu Wang; Lingling Wu; Zai-Sheng Wu; Fan Xia; Chuanlai Xu; Yang Yang; Bi-Feng Yuan; Quan Yuan; Chao Zhang; Zhi Zhu; Chaoyong Yang; Xiao-Bing Zhang; Huanghao Yang; Weihong Tan; Chunhai Fan

doi:10.1007/s11426-020-9864-7

. 2020 Dec 2;64(2):171–203. doi: 10.1007/s11426-020-9864-7

Nucleic Acids Analysis

Yongxi Zhao ^1,^#, Xiaolei Zuo ^2,^#, Qian Li ^3,^#, Feng Chen ¹, Yan-Ru Chen ⁴, Jinqi Deng ⁵, Da Han ², Changlong Hao ⁶, Fujian Huang ⁷, Yanyi Huang ⁸, Guoliang Ke ⁹, Hua Kuang ⁶, Fan Li ², Jiang Li ^10,¹¹, Min Li ², Na Li ¹², Zhenyu Lin ¹³, Dingbin Liu ¹⁴, Juewen Liu ¹⁵, Libing Liu ^16,¹⁷, Xiaoguo Liu ³, Chunhua Lu ¹³, Fang Luo ¹³, Xiuhai Mao ², Jiashu Sun ⁵, Bo Tang ¹², Fei Wang ³, Jianbin Wang ¹⁸, Lihua Wang ^10,¹¹, Shu Wang ¹⁵, Lingling Wu ², Zai-Sheng Wu ⁴, Fan Xia ⁷, Chuanlai Xu ⁶, Yang Yang ², Bi-Feng Yuan ¹⁹, Quan Yuan ⁹, Chao Zhang ², Zhi Zhu ²⁰, Chaoyong Yang ^2,^20,^✉, Xiao-Bing Zhang ^9,^✉, Huanghao Yang ^13,^✉, Weihong Tan ^2,^9,^✉, Chunhai Fan ^2,^3,^✉

¹Institute of Analytical Chemistry and Instrument for Life Science, The Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an, 710049 China

²Institute of Molecular Medicine, Shanghai Key Laboratory for Nucleic Acid Chemistry and Nanomedicine, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, 200127 China

³School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Institute of Translational Medicine, Shanghai Jiao Tong University, Shanghai, 200240 China

⁴Cancer Metastasis Alert and Prevention Center, Fujian Provincial Key Laboratory of Cancer Metastasis Chemoprevention and Chemotherapy, State Key Laboratory of Photocatalysis on Energy and Environment, College of Chemistry, Fuzhou University, Fuzhou, 350108 China

⁵CAS Key Laboratory of Standardization and Measurement for Nanotechnology, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190 China

⁶State Key Lab of Food Science and Technology, International Joint Research Laboratory for Biointerface and Biodetection, School of Food Science and Technology, Jiangnan University, Wuxi, 214122 China

⁷Faculty of Materials Science and Chemistry, Engineering Research Center of Nano-Geomaterials of Ministry of Education, China University of Geosciences, Wuhan, 430074 China

⁸College of Chemistry and Molecular Engineering, Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, 100871 China

⁹State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082 China

¹⁰Division of Physical Biology, CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800 China

¹¹Bioimaging Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201210 China

¹²College of Chemistry, Chemical Engineering and Materials Science, Key Laboratory of Molecular and Nano Probes, Ministry of Education, Shandong Normal University, Jinan, 250014 China

¹³Ministry of Education Key Laboratory for Analytical Science of Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, 350116 China

¹⁴College of Chemistry, Research Center for Analytical Sciences, State Key Laboratory of Medicinal Chemical Biology, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University, Tianjin, 300071 China

¹⁵Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario N2L 3G1 Canada

¹⁶Laboratory of Organic Solids, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190 China

¹⁷College of Chemistry, University of Chinese Academy of Sciences, Beijing, 100049 China

¹⁸School of Life Sciences, Tsinghua-Peking Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology (ICSB), Chinese Institute for Brain Research (CIBR), Tsinghua University, Beijing, 100084 China

¹⁹Department of Chemistry, Wuhan University, Wuhan, 430072 China

²⁰The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, Key Laboratory for Chemical Biology of Fujian Province, State Key Laboratory of Physical Chemistry of Solid Surfaces, Department of Chemical Biology, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005 China

^✉

Corresponding author.

Contributed equally.

PMCID: PMC7716629 PMID: 33293939

Abstract

Nucleic acids are natural biopolymers of nucleotides that store, encode, transmit and express genetic information, which play central roles in diverse cellular events and diseases in living things. The analysis of nucleic acids and nucleic acids-based analysis have been widely applied in biological studies, clinical diagnosis, environmental analysis, food safety and forensic analysis. During the past decades, the field of nucleic acids analysis has been rapidly advancing with many technological breakthroughs. In this review, we focus on the methods developed for analyzing nucleic acids, nucleic acids-based analysis, device for nucleic acids analysis, and applications of nucleic acids analysis. The representative strategies for the development of new nucleic acids analysis in this field are summarized, and key advantages and possible limitations are discussed. Finally, a brief perspective on existing challenges and further research development is provided.

Keywords: nucleic acids analysis, signal amplification, DNA nanotechnology, aptamer, biosensing

Acknowledgements

The authors appreciate the invitation of the Editor-in-Chief Li-Jun Wan and the help of the editorial team of Science China Chemistry.

Footnotes

Conflict of interest

The authors declare no conflict of interest.

These authors contributed equally to this work.

Contributor Information

Chaoyong Yang, Email: cyyang@xmu.edu.cn.

Xiao-Bing Zhang, Email: xbzhang@hnu.edu.cn.

Huanghao Yang, Email: hhyang@fzu.edu.cn.

Weihong Tan, Email: tan@hnu.edu.cn.

Chunhai Fan, Email: fanchunhai@sjtu.edu.cn.

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PERMALINK

Nucleic Acids Analysis

Yongxi Zhao

Xiaolei Zuo

Qian Li

Feng Chen

Yan-Ru Chen

Jinqi Deng

Da Han

Changlong Hao

Fujian Huang

Yanyi Huang

Guoliang Ke

Hua Kuang

Fan Li

Jiang Li

Min Li

Na Li

Zhenyu Lin

Dingbin Liu

Juewen Liu

Libing Liu

Xiaoguo Liu

Chunhua Lu

Fang Luo

Xiuhai Mao

Jiashu Sun

Bo Tang

Fei Wang

Jianbin Wang

Lihua Wang

Shu Wang

Lingling Wu

Zai-Sheng Wu

Fan Xia

Chuanlai Xu

Yang Yang

Bi-Feng Yuan

Quan Yuan

Chao Zhang

Zhi Zhu

Chaoyong Yang

Xiao-Bing Zhang

Huanghao Yang

Weihong Tan

Chunhai Fan

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