Abstract
Objective
Numerous immunoassays for detecting antibodies directed against SARS-CoV-2 have been rapidly developed and released. Validations of these have been performed with a limited number of samples. The lack of standardisation might lead to significantly different results. This study compared ten automated assays from six vendors in terms of sensitivity, specificity and reproducibility.
Methods
This study compared ten fully automated immunoassays from the following vendors: Diasorin, Epitope Diagnostics, Euroimmun, Roche, YHLO, and Snibe. The retrospective part of the study included patients with a laboratory-confirmed COVID-19 infection, and controls comprised patients with a suspected infection, in whom the disease was excluded. Furthermore, biobanked sera were taken as negative controls (n = 97). The retrospective part involved four groups: (1) laboratory-confirmed COVID-19 infection (n = 183); (1B) suspected COVID-19 infection (n = 167) without a qRT-PCR result but positive serological results from at least two different assays, and suspected COVID-19 infection due to a positive serological result from the Roche assay (n = 295); (2) biobanked sera obtained from patients before the emergence of SARS-CoV-2 (n = 97) as negative controls; and (2A) probably COVID-19-negative sera with negative serological results from at least two different assays (n = 152).
Results
Overall diagnostic sensitivities were: Euroimmun (IgA) 87%; Epitope Diagnostics (IgG) 83%; YHLO (IgG) 77%; Roche (IgM/IgG) 77%; Euroimmun (IgG) 75%; Diasorin (IgG) 53%; Epitope Diagnostics (IgM) 52%; Snibe (IgG) 47%; YHLO (IgM) 35%; and Snibe (IgM) 26%. Diagnostic specificities were: YHLO (IgG) 100%; Roche, 100%; Snibe (IgM/IgG) 100%; Diasorin (IgG) 97%; Euroimmun (IgG) 94%; YHLO (IgM) 94%; Euroimmun (IgA) 83%.
Conclusion
Assays from different vendors substantially varied in terms of their performance. These findings might facilitate selection of appropriate serological assays.
Keywords: Automated SARS-CoV-2 antibody detection, High throughpu testing, Pandemic control, Serpprevalence, Seroconversion, Longitudional monitoring of antibody development
Introduction
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread rapidly, and the resulting coronavirus disease 2019 (COVID-19) has been declared a public health emergency of international concern by the World Health Organization. Rapid and accurate diagnosis of the disease is of the utmost importance for subsequent disease management.
While molecular testing with real-time reverse transcriptase polymerase chain reaction (qRT-PCR) has been the primary means of diagnosing acute SARS-CoV-2 infection, serological testing is gaining importance for diagnosing subacute infections or supporting the diagnosis of respiratory insufficiency in cases where the pathogen is no longer detectable in the upper respiratory tract (Cheng et al., 2020, Loeffelholz and Tang, 2020, Patel et al., 2020, Tang et al., 2020, Yan et al., 2020). Specifically, serology can facilitate the diagnosis of SARS-CoV-2 infections when swab specimens were incorrectly collected and the molecular assays might return a false negative (Zhang et al., 2020). The viral load in swabs decreases in the first week of infection, whereas the concentration of antibodies in serum increases. After approximately 8 days of COVID-19, serological testing is more sensitive than viral nucleic acid detection (Guo et al., 2020, Wolfel et al., 2020). Specifically, antibodies directed against SARS-CoV-2 can be detected in the serum of approximately 40% of COVID-19 patients as early as 7 days after symptom onset, with seroconversion rates rapidly increasing to >90% by Day 14 (Zhao et al., 2020). However, serology devices have just received urgent approval from the National Medical Products Administration in China and from regulatory authorities in various other countries (Farnsworth and Anderson, 2020, Loeffelholz and Tang, 2020). This has resulted in the widespread release of manufacturer-developed laboratory tests that are neither harmonised, standardised, nor thoroughly validated (Farnsworth and Anderson, 2020). Assays vary in terms of their format, the detected antibody class and targeted antigens, and this might lead to poor comparability of results (Okba et al., 2020, Theel et al., 2020). A comprehensive overview of currently available serological test systems can be found on the Johns Hopkins Center for Health Security website (health, 2020).
This study aimed to compare the diagnostic sensitivity and specificity of commercially available SARS-CoV-2 immunoassays. The selection of these tests was based on availability in the current laboratory at the time of testing.
Materials and methods
Serum specimens
Serum tubes (7.5 mL Gel-Monovette; Sarstedt, Nümbrecht, Germany) were used for blood sampling. Specimens were centrifuged at 20 °C for 10 min at 2500 g. Serum was collected and the samples were analysed as soon as possible. If the analyses were delayed, samples were aliquoted and stored between 2–8 °C for a maximum of 3 days. In cases where they had to be stored for longer than 3 days, the serum samples were cryopreserved at −20 °C.
Preanalytical stability
To assess stability of the analytes in serum, five freshly obtained serum samples were analysed with the Roche IgM/IgG assay under the following preanalytical conditions: (1) measurements were performed immediately with the freshly obtained specimens; (2) one aliquot of any specimen was stored at −20 °C prior to delayed measurements; (3) a second aliquot of any specimen was left at room temperature (20–25 °C) for 7 days prior to freezing at −20 °C. All frozen aliquots were thawed and measured independently on Day 7. Measurements were performed with the Roche SARS-CoV-2 assay. These biomaterials were assembled during the period from April to June 2020 inclusive.
Population
Patient serum samples were submitted to the MVZ Labor Dr. Limbach (Heidelberg, Germany) for diagnostic purposes. All leftover serum specimens were anonymised and stored at −20 °C until further use. The following four classes were defined: (1) COVID-19 cases confirmed by qRT-PCR (n = 183); (1B) probably COVID-19-positive sera with no qRT-PCR result but positive serological results from at least two or more different assays (n = 167) and samples with a suspected COVID-19 infection due to a positive serological result from the Roche IgM/IgG assay (n = 295); (2) pre-pandemic sera (n = 97); and (2A) probably COVID-19-negative sera with negative serological results from at least two or more different assays (n = 152). Due to the use of leftover material, not all samples were passed through all platforms. This part of the study was performed on patient material previously collected for diagnostic purposes (secondary use). The anonymised patient material was used in accordance with the Statement of the Central Ethics Committee of the German Medical Association (Bundesärztekammer, 2003). The subjects for the longitudinal monitoring of antibody development were recruited from the IMMUNITOR study at University Medical Center Mannheim, Medical Faculty Mannheim, University of Heidelberg, Germany (https://www.immunitor.de). Recruited subjects with COVID-19 confirmed by qRT-PCR (n = 15) were evaluated. Blood draw was performed at different time points up to 14 weeks after positive qRT-PCR results. Patients’ characteristics are shown in Table 1 . The study was approved by the Institutional Review Board, and written consent was obtained from each subject before sample collection and analysis.
Table 1.
Sex | (n = 15) |
---|---|
Female | 73.3% |
Male | 33.3% |
Age (years) | average: 51.2 (23−64) |
Weight (kg) | average 87.4 (70−165) |
Symptoms | |
Fever | 60.0% |
Night sweat | 46.7% |
Diarrhoea | 20.0% |
Cough | 40.0% |
Shortness of breath | 40.0% |
Muscle pain | 80.0% |
Nausea | 33.3% |
Anosmia | 80.0% |
Comorbidities | |
Autoimmune deficiency | 13.3% |
Hypertension | 40.0% |
Asthma | 20.0% |
Active cancer disease | 0.0% |
Renal impairment | 0.0% |
Hepatic disease | 0.0% |
Serological testing
The SARS-CoV-2 serology was routinely performed on an iFLASH 1800 using the IgM and IgG assays from Shenzhen YHLO Biotech. In addition, alternative serological assays from six suppliers listed in Table 2 were performed in parallel. All serum antibody tests were performed with fully automated analysers according to the manufacturers’ instructions. Titers were calculated and results interpreted according to the manufacturers’ protocols.
Table 2.
Supplier (alphabetic order) | Analyser | Method | Antibody | Antigen |
---|---|---|---|---|
DiaSorin | Liaison | CLIA | IgG | S1- and S2 Subunit of S-protein |
Epitope Diagnostic | DSX | ELISA | IgG and IgM | N-protein |
Euroimmun | WorkStation | ELISA | IgG and IgA | S1-subunit of S-protein |
Roche Elecsys | Cobas 801 | ECLIA | IgG/M | N-protein |
Yhlo Biotech | iFlash 1800 | CLIA | IgG and IgM | S- and N-protein |
Snibe Diagnostic | Maglumi 800 | CLIA | IgG and IgM | S- and N-protein |
Reproducibility
Intraday and interday precision were determined for assays from Roche and Shenzhen YHLO Biotech. For the Elecsys Anti-SARS-CoV-2 electrochemiluminescence immunoassay (ECLIA), commercially available controls with defined cut-off interval (COI) values and one human serum pool near the cut-off value were used. Pooled patient samples were used to evaluate the Shenzhen YHLO Biotech assay. Due to unavailability of commercially available controls, the evaluation of the Shenzhen YHLO Biotech test was conducted exclusively by pooling patient material. Repeated measurements for controls and pooled serum samples were performed five times on five consecutive days, in line with the EP15-A3 protocol from the Clinical and Laboratory Standards Institute (CLSI).
Statistical analyses
Sensitivity was defined as the proportion of patients correctly identified as having SARS-CoV-2 infections that were confirmed by positive qRT-PCR in respiratory samples. Specificity was defined as the proportion of SARS-CoV-2 immune-naive study participants accurately identified as negative for COVID-19. The clinical accuracies of the ELISA assays were examined by using area under the receiver operating characteristic (AUROC) plots with Abacus 2.0 software (LABanalytics GmbH, Germany). AUROCs were calculated as the fraction ‘correctly identified as positive’ and the fraction ‘falsely identified as positive’ determined according to manufacturers’ cut-off values for positive results. The EP15-A3 model from the CLSI was used to estimate imprecision, reproducibility, linearity, and limit of detection (LOD). These validation steps were carried out using Abacus 2.0 (LABanalytics GmbH, Germany).
For normalisation of data, the Z-score was calculated (i.e. the difference between the measured value and the assigned value corrected for the variability) (Coucke and Soumali, 2017).
Results
Reproducibility
The intra-assay variabilities of the SARS-CoV-2 IgM and IgG tests from Shenzhen YHLO Biotech and Roche were determined five times on five consecutive days, in line with the EP15-A3 protocol from the CLSI. The inter-assay variabilities were determined by a single measurement of a negative and a positive control over 15 days. Figure 1 shows the precision data for Shenzhen YHLO Biotech’s IgM and IgG tests. Reproducibility was high, as coefficients of variation (CV) for all positive specimens were <8%.
Preanalytical stability
Preanalytical stability was high and no statistically significant deviation between results from initial and delayed measurements could be detected. The CV for all measurements was 4.8%, which is within the range of the abovementioned reproducibility.
Linearity
Positive serum specimens with titres at least 10 times above the cut-off value were diluted 1:1 stepwise. The dilution series were performed for the Shenzhen YHLO Biotech IgG assay and for the Roche IgG/IgM assay. Both assays were not linear and saturation was observed for higher concentrations (Supplemental Figure 1). The limit of blank (LOB) for the SARS-CoV-2 IgM test was 0.192 AU/mL, and 0.05 AU/mL for the IgG test. The limit of detection (LOD) for the SARS-CoV-2 IgM test was 0.36 AU/mL, and 0.145 AU/mL for the IgG test. The ECLIA test from Roche yielded an LOD of 0.068 COI and a limit of quantification (LOQ) of 0.082 COI.
Z-scores
The SARS-CoV-2 IgM and IgG assays from Shenzhen YHLO Biotech (cut-off value: 10 AU/mL) and Roche Diagnostics (cut-off value: 1 COI/QE) were compared. The data were standardised using the Z-score calculation with Log (1) as the cut-off value (Coucke and Soumali, 2017). QRT-PCR-confirmed COVID-19 sera (n = 59) and pre-pandemic control sera (n = 50) were used. The Shenzhen YHLO Biotech IgG test correctly identified more COVID-19 cases as positive than the Roche IgM/IgG test (Figure 2 ). However, in subsequent analyses (see Section ‘Comparison of the two superior tests’), samples were identified that were positive with the Roche IgM/IgG test but negative with the Shenzhen YHLO Biotech IgG test. The Shenzhen YHLO Biotech IgM assay showed the lowest performance. The control sera were correctly identified as negative by both IgG tests. It is worth noting the large interquartile distance of the Roche IgM/IgG assay among the COVID-19-positive sera, and the particularly small interquartile distance among the negative sera.
Sensitivity
Figure 3 shows the sensitivity of SARS-CoV-2 antibody tests from six manufacturers. Serum specimens from qRT-PCR-confirmed patients (Class 1) were analysed. The most sensitive SARS-CoV-2 antibody test was the Euroimmun IgA test with 87%, followed by the Epitope Diagnostics IgG test with 83%, the Shenzhen YHLO Biotech IgG test with 77%, the Roche IgM/IgG test with 77%, the Euroimmun IgG test with 75%, the Diasorin IgG test with 53%, the Epitope Diagnostics IgM test with 52%, the Snibe IgG Test with 47%, the Shenzhen YHLO Biotech IgM test with 35%, and the Snibe IgM test with 26%. However, if only sera collected at least 10 days after positive RT-PCR were included in the sensitivity calculation, the sensitivity changed as follows: Shenzhen YHLO Biotech IgG 89%; Euroimmun IgG 88%; Roche IgM/IgG 86%; Euroimmun IgA 85%; Epitope Diagnostics IgG 78%; Snibe IgG 58%; Diasorin IgG 58%; Epitope Diagnostics IgM 44%; Shenzhen YHLO Biotech IgM 33%; and Snibe IgM 26%.
Specificity
Serum specimens of pre-pandemic patients (Class 2) were analysed. Specificity of 100% was achieved with the Shenzhen YHLO Biotech IgG assay, Roche IgM/IgG assay and Snibe IgM and IgG assays. Diasorin had a specificity of 97%, Euroimmun IgG had 94%, Shenzhen YHLO Biotech IgM had 94%, and Euroimmun IgA had 83%. Due to their low sensitivity performance and the limited amount of sample material, the assays from Epitope Diagnostics were not further tested for specificity.
AUROC analysis
The diagnostic power of all IAs listed in Table 2 was determined by area under the receiver operating characteristic (AUROC) analyses. AUROC values ranged from 0.97 (Shenzhen YHLO Biotech IgG) to 0.66 (Snibe IgM) and are shown in Figure 4 . The IgG assay from Shenzhen YHLO Biotech and the Roche IgM/IgG assay had the highest AUROC values of 0.97 and 0.96, respectively. The AUROC values of all tested IAs are displayed in Table 3 .
Table 3.
AUC (CI) | Positive (n) | Negative (n) | Total (n) | |
---|---|---|---|---|
YHLO Biotech IgG | 0.97 (0.95−0.99) | 167 | 95 | 262 |
ROCHE | 0.96 (0.92−0.96) | 87 | 50 | 137 |
Euroimmun IgA | 0.93 (0.88−0.98) | 61 | 35 | 96 |
Euroimmun IgG | 0.92 (0.86−0.97) | 64 | 35 | 99 |
Snibe IgG | 0.86 (0.77−0.95) | 38 | 35 | 73 |
DiaSorin IgG | 0.83 (0.75−0.90) | 55 | 65 | 120 |
YHLO Biotech IgM | 0.79 (0.74−0.85) | 142 | 95 | 237 |
Snibe IgM | 0.66 (0.53−0.78) | 38 | 35 | 73 |
Concordance analysis
Identical specimens of proven (Class 1) and probable (Class 2) COVID-19 patients, as well as controls from pre-pandemic patients (Class 2) and SARS-CoV-2-negative patients (Class 2A) were tested in parallel with all IAs listed in Table 1. The highest concordance was observed between the Shenzhen YHLO IgG assay and the Roche IgM/IgG assay, with 83%, 94%, 100%, and 100% for classes 1, 1B, 2, and 2A, respectively (Supplementary Figure 2).
Comparison of the two superior tests
Due to the necessity of higher throughput, the initially established assay from Shenzhen YHLO Biotech was substituted by the IgM/IgG assay from Roche Diagnostics. Routine samples with positive results from the Roche IgM/IgG assay (n = 295) were subsequently measured with the Shenzhen YHLO Biotech assays. The Roche IgM/IgG assay showed 91.86% (271 of 295) agreement with the Shenzhen YHLO Biotech IgG assay. However, in 8.14% (24 of 295) of all cases, only the Roche IgM/IgG assay was positive and the Shenzhen YHLO Biotech IgG assay was negative. The median values (standard deviations, SD) of these 24 divergent results were 3.3 (SD: 3.35) for the Roche assay (cut-off: 1.0 COI) and 5.2 (SD: 3.3) for the Shenzhen YHLO Biotech IgG (cut-off: 10 AU/mL).
Longitudinal monitoring
Sera were analysed with the IgM and IgG tests from Shenzhen YHLO Biotech. The kinetics of the immune response were modelled with COVID-19-positive sera confirmed by qRT-PCR (n = 15), and blood draw was performed at various time points up to 14 weeks after positive qRT-PCR results. The kinetics of the antibody response showed high interindividual variability and were grouped into four categories: (I) decreasing, (II) increasing, (III) steady, and (IV) variable concentrations. Most interestingly, antibody formation could not be detected for IgM or IgG, even 9 weeks after positive qRT-PCR (Figure 5 ).
Discussion
Serology testing for SARS-CoV-2 is increasingly becoming an interesting way of better quantifying the number of COVID-19 infections. Specifically, patients who have a subclinical infection or are perhaps even asymptomatic often lack results from molecular diagnostic assays. Accordingly, the combination of molecular and serological assays can greatly improve the diagnostic efficacy (Krammer and Simon, 2020, Liu et al., 2020, Lou et al., 2020, Winter and Hegde, 2020). Serological testing is an integral component of a testing algorithm that has been proposed by the Infectious Diseases Society of America (Lu et al., 2020). However, due to their rapid introduction, the available SARS-CoV-2 assays have not been thoroughly validated. Furthermore, different immunoassays vary in terms of format, detected antibody class, targeted antigen, and acceptable specimen types (Bryant et al., 2020, Okba et al., 2020, Theel et al., 2020). Therefore, results from different assays are not necessarily congruent, as the respective diagnostic specificities and sensitivities vary (Younes et al., 2020).
Several method comparisons have been published over the last month. Some authors compared a limited number of tests comprising not more than two immunoassays (Kohmer et al., 2020b, Montesinos et al., 2020, Nicol et al., 2020). In contrast, Lassaunière et al. (2020) evaluated nine commercial SARS-CoV-2 immunoassays; however, the majority of these were point-of-care tests and only two vendors (Wantai and Euroimmun) offered automated test formats. Plebani et al. (2020) compared the reliability of three chemiluminescent immunoassays (CLIA) and two enzyme-linked immunosorbent assays (ELISA). However, the focus of their work was the definition of optimised thresholds that might improve the negative likelihood ratio and reduce the false positives that can hamper any screening approach in an asymptomatic population (Plebani et al., 2020). A recent study from Weidner et al. (2020) focused on a quantitative correlation between different commercial assays, including automated platforms from Euroimmun, Wantai, Roche, and Diasorin, However, the study only included sera from SARS-CoV-2 convalescent patients and no COVID-19-negative controls. In a further study, Kohmer et al. (2020a) compared the performance of six automated immunoassays (from Abbott, Roche, Diasorin, Virclia, Euroimmun, and Virotech). However, the analyses were restricted to IgG and total antibodies, and only limited numbers of COVID-19 patients (n = 45) and non-COVID-19 patients (n = 37) were analysed. In the most recent study, Kruttgen et al. (2020) compared four commercial assays. Again, the study’s shortcoming was the limited number of sera from patients who tested positive or negative by SARS-CoV-2 PCR (n = 75). The issue of small sample size has been highlighted by a systematic review and meta-analysis (Lisboa Bastos et al., 2020).
This study presented data from 10 immunoassays comprising IgA, IgM, IgG, and combined IgG/IgM tests from six vendors: Diasorin, Epitope Diagnostics, Euroimmun, Roche, Shenzhen YHLO Biotech, and Snibe. The study included over 900 serum specimens (n = 904) from patients with proven (n = 193) and probable (n = 167) COVID-19 infection, and controls from pre-pandemic patients (n = 97) and probable SARS-CoV-2-negative patients (n = 152). Specimens with SARS-CoV-2-positive results from the Roche IgG/IgM test (n = 295) were re-analysed with the Shenzhen YHLO Biotech IgG assay. As expected, assay performance was markedly different, with AUROC values ranging from 0.66 (Snibe IgM) to 0.97 (Shenzhen YHLO Biotech IgG). The best concordance was observed between the Shenzhen YHLO Biotech IgG and the Roche IgG/IgM tests.
The comparison of the Shenzhen YHLO Biotech IgG assay and the Roche IgG/IgM assay revealed a small subset of specimens that were positive in one of the two assays. This indicated an individual immune response to SARS-CoV-2 and the influence of the assays used (Kohmer et al., 2020a). Antibodies that are exclusively detected by the N-protein-based Roche assay (Table 2) might not have neutralising capacity. In contrast, antibodies directed against the S-protein can interfere with the virus’s ability to bind to the ACE receptor of the host cell and will most likely have neutralising capacity. Further analyses are needed to decipher the humoral immune response (Kreer et al., 2020).
The IgG-positive rate was consistently higher than the IgM-positive rate, and this phenomenon was also observed in another study (Zhang et al., 2020). The clinical value of IgM for early diagnosis of COVID-19 is currently unclear. SARS-CoV-2-specific IgM does not always appear before its IgG counterpart. Some studies have reported the detection of SARS-CoV-2-specific IgG even before IgM (Thevarajan et al., 2020, To et al., 2020, Zhao et al., 2020). However, even if IgM sensitivity is superior in a few cases, the low specificity of IgM antibodies is an obstacle to clear interpretations of test results. Specifically, a low prevalence of COVID-19 patients leads to significant numbers of false positives, not only for IgM assays but also for IgG assays with high specificity (Lisboa Bastos et al., 2020). Furthermore, the possibility of false negative results and the phenomenon of missing seroconversion will have to be discussed. The current study observed the repeated absence of SARS-CoV-2-specific IgG and IgM antibodies for one patient as long as 9 weeks after a positive qRT-PCR result (Figure 5). These negative results have been confirmed by independent measurements with the Roche IgG/IgM assay. A multiplexed assay format for simultaneous quantitation of IgG, IgM, and IgA immunoglobulins against four SARS-CoV-2 targets was recently described (Norman et al., 2020). It resulted in the monitoring of 12 antibody isotype-viral protein interactions, and this high-resolution profile of the immune response might be needed to resolve rare cases of missing seroconversion. Another explanation for this phenomenon might be a false-positive test result. These cases are rare but have been reported in literature (fda.gov, 2020, Surkova et al., 2020).
This study had several limitations. First, clinical data for most patients were unavailable because all of the specimens from the MVZ Laboratory in Heidelberg were anonymised. Second, the humoral immune response might have been affected by the severity of COVID-19 infections or by various comorbidities (Long et al., 2020, To et al., 2020, Zhao et al., 2020). Furthermore, the serological diagnosis of COVID-19 is strongly influenced by the time of blood draw, as seroconversion is time-dependent. The date of positive qRT-PCR was taken as the reference timepoint in the current study. However, as virus elimination and positive qRT-PCR can be prolonged (Guo et al., 2020, Wolfel et al., 2020), the onset of symptoms might have been a more accurate reference point; this was only available for a small fraction of the samples. Finally, due to the use of leftover material, not all samples were passed through all platforms in this retrospective study. A further limitation was the collective 2B, where the Roche assay was used as a surrogate marker of an experienced SARS-CoV-2 infection. This risked positively biasing the study results in favour of the Roche assay, but had to be chosen due to the study design. Laboratories that are not directly integrated into a hospital infrastructure often do not receive the corresponding PCR results. The Roche test was chosen because the manufacturer could demonstrate a specificity collective of almost 5000 patients at that time. These limitations indicate the need for large, prospective and multicentre studies to elucidate the advantages and disadvantages of serological testing.
Ethics approval
The study project was approved by the local ethics committee (ethics committee II Medical Faculty Mannheim of the University of Heidelberg).
Funding
All study projects were carried out without funding.
Conflict of interest
None declare.
Footnotes
Supplementary material related to this article can be found, in the online version, at doi:https://doi.org/10.1016/j.ijid.2020.12.003.
Appendix A. Supplementary data
The following are Supplementary data to this article:
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