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PLOS ONE logoLink to PLOS ONE
. 2020 Dec 28;15(12):e0236260. doi: 10.1371/journal.pone.0236260

Clopidogrel responder status is uninfluenced by CYP2C19*2 in Danish patients with stroke

Charlotte Lützhøft Rath 1,*, Niklas Rye Jørgensen 2,3, Troels Wienecke 1,4
Editor: Pablo Garcia de Frutos5
PMCID: PMC7769274  PMID: 33370281

Abstract

Background

Antiplatelet therapy is a cornerstone of secondary stroke prevention, but the responsiveness to antiplatelet medication varies among patients. Clopidogrel is a pro-drug that requires hepatic transformation to reach its active metabolite. Single nucleotide polymorphisms (SNPs) in key enzymes or the target adenosine diphosphate (ADP) receptor on the platelet surface are believed to be involved in clopidogrel-mediated platelet inhibition and decreased antiplatelet effect with high-on-treatment platelet reactivity (HTPR).

Objective

This study investigated whether specific SNPs in key hepatic enzymes (CYP2C19*2, *3, *17, CYP3A4*1G, and NR1I2) or the ADP receptor (PR2Y12) are associated with HTPR to clopidogrel.

Patients & methods

This observational study included patients with ischemic stroke (IS) and transient ischemic attacks (TIAs) receiving clopidogrel at a dose of 75 mg/day. Patients were genotyped for eight different SNPs in the genes encoding CYP2C19, CYP3A4, NR1I2, and the P2Y12 receptor.

Results

Of the 103 patients that were included, 30.7% carried the CYP2C19*2 allele and had higher platelet reaction unit (PRU) values than non-carriers, but no patients showed HTPR. Carriers of the *17 allele had higher platelet inhibition but showed no difference in PRU values compared with non-carriers. The remaining SNPs were neither associated with PRU nor with platelet inhibition.

Conclusions

Patients with IS and TIAs treated with 75 mg clopidogrel/day do not have HTPR. A genetic analysis of CYP2C19*2, *3, *17, CYP3A4*1G, and NR1I2 revealed no associations with clopidogrel HTPR. CYP2C19*2 carriers and patients with HTPR in the acute phase after ischemic stroke or transient ischemic attacks exhibit higher PRU values, but not long-term treatment HTPR.

Introduction

Clopidogrel prevents recurrent ischemic stroke (IS) with the same efficacy as aspirin in combination with extended-release dipyridamole [1]. The ex vivo prevalence of high-on-treatment platelet reactivity (HTPR) varies from 8 to 61% in clopidogrel-treated patients with IS and transient ischemic attacks (TIAs) [2]. Furthermore, a recent meta-analysis by Fiolaki et al. showed that the clopidogrel HTPR prevalence is 27%, and that patients with HTPR have an increased risk of recurrent IS and TIAs [3]. In patients with coronary artery disease undergoing percutaneous intervention, tailored antiplatelet therapy (either increased drug dosage or shift of medical therapy), guided by platelet function tests (PFTs), is associated with less occurrence of death and stent thrombosis without an increased risk of bleeding complications or clinical adverse events [4].

Clopidogrel is a pro-drug that requires a two-step oxidation by the cytochrome P450 system. Genetic variants (single nucleotide polymorphisms, SNPs) in key enzymes involved in this process or in the formation of the P2Y12 receptor on the platelet surface might affect phenotypic platelet responses measured with PFTs.

This study investigates whether patients with ischemic stroke during secondary prophylactic treatment with 75 mg clopidogrel daily carrying the SNPs CYP2C19*2, *3, or *17, or CYP3A4*1G, NR1I2, or P2Y12 [59] have a higher risk of HTPR, and whether an increased dosage of clopidogrel can overcome HTPR in these patients, as has been shown for patients with cardiovascular disease (CVD) [10].

CYP2C19 is believed to be the most important enzyme in the two-step oxidation of clopidogrel to its active metabolite. The *2 allele is a loss-of-function (LOF) mutation resulting in complete loss of enzymatic activity. Consequently, carriers of the *2 allele show reduced formation of the active clopidogrel metabolite and hence reduced clopidogrel-induced platelet inhibition. The *17 allele is a gain-of-function (GOF) mutation leading to increased enzyme function and hence increased clopidogrel-induced platelet inhibition. Fig 1 provides a simplified overview of the examined SNPs.

Fig 1. Clopidogrel metabolism.

Fig 1

CYP3A4 is involved in the second oxidation step of the clopidogrel activation. The *1G allele is a gain-of-function allele resulting in increased platelet inhibition. The NR1I2 is a regulator of several enzymes including CYP2C19 and CYP3A4. A recent meta-analysis suggests that clopidogrel is primarily metabolized by CYP3A4, and that CYP2C19 is a minor pathway for clopidogrel metabolism [11].

The P2Y12 receptor binds the active clopidogrel metabolite on the platelet surface. The irreversible binding of clopidogrel to the receptor prohibits ADP from activating the platelet through this pathway and thereby decreases platelet activation. However, changes in the structure of the P2Y12 receptor caused by, for example, genetic variation in the gene encoding the receptor could potentially prevent clopidogrel from binding to the receptor. The result is less platelet inhibition and a potential phenotypic clopidogrel resistance [5].

Materials and methods

In this observational study, we assessed patients with ischemic stroke at the Neurovascular Centre at Zealand University Hospital.

The study was approved by the local ethics committee (Den Regionale Videnskabsetiske Komite I Region Sjælland) (SJ-488) and the national competent authority (Danish Health Authority: Eudra-CT: 2015-003548-58).

Between May 2016 and August 2017, a total of 103 patients with an IS or TIA diagnosis were enrolled in the study, based on the following inclusion criteria: Clinical diagnosis of ischemic stroke or transient ischemic attack (TIA); minimum age of 18 years; secondary prophylaxis with 75 mg clopidogrel daily for a minimum of 5 days after a loading dose of 300 mg on day 1 or 75 mg daily for a minimum of 14 days. Exclusion criteria: Intracranial haemorrhage; increased risk of bleeding; treatment with other antiplatelet drugs, vitamin-K antagonists, or new oral anticoagulants (NOACs); allergy towards clopidogrel; pregnant or breastfeeding women.

Patients were seen in the outpatient clinic for platelet inhibition tests and blood sampling for genotyping. Patients were phoned prior to the visit, to encourage medication adherence. Adherence was confirmed by checking the Danish prescription database and the patient’s medical history. The assessment was deferred in any patients deemed possibly non-adherent.

Blood sampling

Blood samples were collected in buffered Na Citrate sample tubes provided by the manufacturer (Accumetrics, San Diego, CA). The first sample was discarded. Blood sampling for HTPR-testing was performed fasting and after the patient had been resting for at least 20‒30 min, by careful antecubital venepuncture by an experienced physician using a Vacutainer safety-lock system (Becton Dickinson, Franklin Lakes, NJ) with a pre-attached holder and a 21-gauge syringe. Additional blood samples were collected in EDTA-tubes and stored at -20 ˚C for later genotyping.

Platelet function test and clopidogrel HTPR definition

The VerifyNow P2Y12 (Accumetrics, San Diego, CA) is a rapid platelet-function cartridge-based assay designed to directly measure the effects of drugs on the P2Y12 receptor. Platelet aggregation samples were analysed 10‒240 min after blood sampling, using the VerifyNow P2Y12 according to the manufacturer’s instructions. Results are reported in platelet reaction units (PRU), indicating adenosine diphosphate-mediated platelet aggregation specific to clopidogrel. Additionally, “Base” serves as an estimate of a patient’s baseline platelet function independent of P2Y12 receptor inhibition. On the basis of a patient’s Base and PRU values, the % inhibition is calculated, representing the percent change from baseline aggregation. HTPR was defined as an ex vivo PRU value ≥208 in a drug-adherent patient, measured by the VerifyNow P2Y12 assay [12, 13].

Gene polymorphisms

Genomic deoxyribonucleic acid (DNA) was extracted from whole-blood samples using the Maxwell 16 blood DNA purification kit (Promega Corporation, Madison, WI). DNA concentrations were measured with NanoDrop 2000 (Thermo Scientific, Waltham, MA). CYP2C19*2 and CYP2C19*3 genotyping was performed by polymerase chain reaction (PCR) restriction fragment length polymorphism (RFLP) analysis. For CYP2C19*2 (rs4244285), the forward primer sequence used in PCR was 5’-AATTACAACCAGAGCTTGGC-3’, and the reverse sequence 3’-AGTATAATCAATTGTCTATTATTAT-5’. For CYP2C19*3 (rs4986893), the forward primer sequence was 5’-AACATCAGGATTGTAAGCAC-3’, and the reverse sequence 3’-TCAGGGCTTGGTCAATATAG-5’. The amplification protocol was 95 ˚C for 15 min, 35 cycles of 94 ˚C for 30 sec, 60 ˚C for 45 sec, and 72 ˚C for 1 min, followed by 72 ˚C for 10 min. The PCR product of CYP2C19*2 was digested and mapped using SmaI, and the CYP2C19*3 PCR product was digested and mapped using BamH1. Digested PCR products were analysed in 2% agarose gels stained with ethidium bromide.

CYP2C19*2 (rs4244285), *3 (rs4986893), and *17 (rs12248560), and CYP3A4*1G (rs2242480), NR1I2 (rs13059232), P2RY12 (rs2046934 and rs6785930), and P2Y12 (rs9859552) were simultaneously analysed with competitive allele-specific PCR (KASP; LGC Genomics, Hoddesdon, UK).

Statistics

Power calculations were conducted with assistance from the Department of Biostatistics at Copenhagen University. We assumed that 25.7% of all patients would be carriers of at least one CYP2C19*2 allele, and 2.2% would be homozygote for the CYP2C19*2 allele [14], based on results from a study in patients with CVD [15]. This would yield a 90% chance of detecting a 5% difference between the groups with 103 included patients.

Surprisingly, however, none of the first 28 patients showed HTPR during treatment with 75 mg clopidogrel/day. Therefore, we invited patients from a previous study [16] who fulfilled the inclusion criteria and who we knew to have clopidogrel HTPR in the hyper-acute stroke phase (treated with 300 mg clopidogrel <48 hours from stroke onset, and PRU measured 8‒24 hours from clopidogrel intake). Twenty-six patients agreed to participate. At the time of inclusion, they were undergoing long-term treatment with clopidogrel at a dose of 75 mg/day.

Statistical analyses were performed using IBM SPSS software for Windows, version 24 (Chicago, IL). All data, except PRU values and “days between clopidogrel initiation and PRU measurement” were normally distributed. Categorical data are expressed as frequencies and percentages, continuous data as the mean ± standard deviation (SD) or the median and inter-quartile ranges (IQR), as appropriate. For continuous outcome variables, differences between groups were analysed using Student’s t-tests with Levine’s test for equality of variances, or the Mann-Whitney U test, as appropriate. For categorical outcome variables (all dichotomous), a chi-square test was used, in combination with Fisher’s exact test when the expected values in the 2x2 tables were <5. A p-value <0.05 was considered statistically significant.

Results

103 patients were examined, confirmed eligible and enrolled in the study, including the 26 patients with PRU values from the hyper-acute stroke phase who had participated in an earlier study. None showed clopidogrel HTPR with a PRU cut-off ≥208 when treated with 75 mg clopidogrel/day. Median treatment time was 69 days (IQR: 30‒503) for the entire population, 492 days (IQR: 421‒552) for the 26 patients with HTPR in the hyper-acute stroke phase, and 42 days (IQR: 27–114) for the remaining 77 patients. For additional patient characteristics, see Table 1.

Table 1. Characteristics of the study population.

    CYP2C19*2 CYP2C19*17 CYP23A4*1G NR1I2 P2Y12; rs2046934 P2Y12; rs9859552 P2RY12; rs6785930
All (n = 103) GG (n = 70) GA/AA (n = 31) CC (n = 71) CT/TT (n = 31) CC (n = 74) CT/TT (n = 28) TT (n = 18) TC/CC (n = 84) TT (n = 71) TC/TT (n = 31) GG (n = 67) GT/TT (n = 35) GG (n = 45) GA/AA (n = 54)
Age, years (SD) 67 ± 11 67 ± 10 68 ± 11 68 ± 10 69 ± 12 67 ± 11 68 ± 9 62 ± 12 69 ± 10 68 ± 10 67 ± 11 68 ± 11 67 ± 10 69 ± 11 66 ± 10
Male, n (%) 62 (60.2) 38 (54.3) 23 (74.2) 44 (62.0) 17 (54.8) 49 (66.2) 12 (42.9) 10 (55.6) 51 (60.7) 39 (54.9) 22 (71.0) 40 (59.7) 21 (60.0) 31 (68.9) 27 (50.0)
Diabetes, n (%) 12 (11.7) 10 (14.3) 1 (3.2) 6 (8.5) 6 (19.4) 7 (9.5) 5 (17.9) 3 (16.7) 9 (10.7) 9 (12.7) 3 (9.7) 8 (11.9) 4 (11.4) 6 (13.3) 6 (11.1)
Hypertension n (%) 48 (46.6) 29 (41.4) 18 (58.1) 36 (50.7) 12 (38.7) 30 (40.5) 18 (64.3) 7 (38.9) 41 (48.8) 32 (45.1) 16 (51.6) 31 (46.3) 17 (48.6) 22 (48.9) 24 (44.4)
Statin treatment n (%) 91 (88.3) 61 (87.1) 29 (93.5) 64 (90.1) 26 (83.9) 66 (89.2) 23 (88.5) 18 (100) 72 (85.7) 63 (88.7) 27 (87.1) 62 (92.5) 28 (80.0) 38 (84.4) 49 (90.7)
PPI treatment n (%) 30 (29.1) 24 (34.3) 5 (16.1) 21 (29.6) 9 (29.0) 25 (33.8) 5 (19.2) 7 (38.9) 23 (27.4) 24 (33.8) 6 (19.4) 17 (25.4) 13 (37.1) 14 (31.1) 15 (27.8)
IHD n (%) 9 (8.7) 5 (7.1) 4 (12.9) 9 (12.7) 0 (0) 7 (9.5) 2 (7.1) 0 (0) 9 (10.7) 7 (9.9) 2 (6.5) 7 (10.4) 2 (5.7) 7 (15.6) 2 (3.7)
Ischemic stroke n (%) 65 (63.1) 46 (65.7) 18 (58.1) 45 (63.4) 19 (61.3) 45 (60.8) 18 (69.2) 14 (77.8) 50 (59.5) 44 (62.0) 20 (64.5) 40 (59.7) 24 (68.6) 29 (64.4) 33 (61.1)
PRU (IQR) 98 (46–130) 74 (9–118) 129 (83–162) 104 (54–137) 64 (9–126) 103 (41–137) 98 (60–116) 89 (44–139) 100 (47–130) 103 (53–135) 87 (9–119) 83 (33–120) 110 (68–139) 110 (53–142) 89 (41–120)
Inhibition % (SD) 57 ± 28 65 ± 25.1 39 ± 23.4 52 ± 26.9 66 ± 27.2 57 ± 28.1 55 ± 25.3 58 ± 25.0 56 ± 28.2 56 ± 26.6 57 ± 30.1 59 ± 28.8 52 ± 24.8 50 ± 27.0 59 ± 27.0
Baseline PRU (SD) 204 ± 31 207 ± 29.5 198 ± 34.4 204 ± 33.6 207 ± 24.7 206 ± 31.6 198 ± 30.4 209 ± 40.6 203 ± 28.8 211 ± 26.4 189 ± 35.5 200 ± 32.3 213 ± 27.2 205 ± 32.9 204 ± 30.2

SD, standard deviation; PPI, proton pump inhibitor; IHD, ischemic heart disease; PRU, platelet reaction units; IQR, inter-quartile range.

The 26 patients with clopidogrel HTPR in the hyper-acute stroke phase all presented a similar linear PRU decline when measured under steady-state long-term treatment (Fig 2). Regardless of their PRU values in the hyper-acute phase, none of the patients exhibited clopidogrel HTPR under steady-state long-term treatment with 75 mg clopidogrel/day. They did, however, have higher PRU values on long-term treatment than the rest of the patient population (109.8 vs 81.5; p = 0.03, 95%CI:-53.5;-3.1).

Fig 2. PRU change over time.

Fig 2

The allele frequency of the examined SNPs is presented in Table 2. In 1 to 4 patients the SNP the examined SNP was undetermined, depending on the SNP in question. No patients carried the CYP2C19*3 allele. All examined SNPs were in Hardy-Weinberg equilibrium.

Table 2. Allele frequency.

SNP n (%) SNP n (%)
CYP2C19*2   P2Y12 rs2046934  
GG 70 (69.3) TT 71 (69.6)
GA 29 (28.7) TC 25 (25.5)
AA 2 (2.0) CC 6 (5.9)
Undetermined 2 Undetermined 1
CYP2C19*17   P2Y12 rs9859552  
CC 71 (69.6) GG 67 (65.7)
CT 25 (24.5) GT 31 (30.4)
TT 6 (5.9) TT 4 (3.9)
Undetermined 1 Undetermined 1
CYP23A4*16   P2RY12 rs6785930
CC 74 (72.5) GG 45 (45.5)
CT 28 (27.5) GA 48 (48.5)
TT 0 (0) AA 6 (6.1)
Undetermined 1 Undetermined 4
NR1I2  
CC 45 (44.1)
CT 39 (39.2)
TT 18 (17.6)
Undetermined 1

SNP, single nucleotide polymorphism.

Of all patients, 30.7% were carriers of the CYP2C19*2 allele. Two patients were homozygote for the *2 allele (Table 2). Carriers of the *2 allele had higher PRU values (129 vs 74; p<0.01) and lower inhibition values (39 vs 65; p<0.01; 95%CI: 15.2;-36.2) (Table 3) than non-carriers. Homozygotes for the *2 allele had the highest PRU values (181.5 ± 28) and the lowest inhibition values (6 ± 2.8) (Fig 3). Even though their PRU values were higher, none of these patients exhibited HTPR.

Table 3. Associations between genetic polymorpisms, platelet reactivity and % inhibition.

      PRU*       % inhibition**      
Gene SNP Alleles NC median (IQR) C median (IQR) U statistics (z) p-value Effect size r NC mean ± SD C mean ± SD Mean difference (95%CI) p-value Cohens d
CYP2C19*2 rs4244285 G>A 74 (9–118) 129 (83–162) 1595 (3.756) <0.01 0.37 65 ± 25.1 39 ± 23.4 25.7 (15.2;36.2) <0.01 1.08
CYP2C19*17 rs21248560 C>T 104 (54–137) 64 (9–126) 856 (-1.779) 0.08 -0.18 52 ± 26.9 66 ± 27.2 -13.5 (-25.0;-2.0) 0.02 0.53
CYP23A4*16 rs2242480 C>T 103 (41–137) 98 (60–116) 872.5 (-0.703) 0.48 -0.07 57 ± 28.1 55 ± 25.3 1.55 (-10.9;13.9) 0.81 0.08
NR1I2 rs13059232 T>C 89 (44–139) 100 (47–130) 748.5 (-0.066) 0.95 -0.01 58 ± 25.0 56 ± 28.2 1.86 (-12.4; 16.1) 0.80 0.08
P2Y12 rs2046934 C>T 103 (53–135) 87 (9–119) 952 (-1.081) 0.28 -0.11 56 ± 26.6 57 ± 30.1 -0.95 (-12.8; 10.9) 0.85 0.04
P2Y12 rs9859552 G>T 83 (33–120) 110 (68–139) 1424.5 (1.777) 0.08 0.18 59 ± 28.8 52 ± 24.8 6.81 (-4.6; 18.2) 0.24 0.26
P2RY12 rs6785930 G>A 110 (53–142) 89 (41–120) 950 (-1.863) 0.06 -0.19 50 ± 27.0 59 ± 27.0 -8.86 (-19.7; -2.0) 0.11 0.33

SNP, single nucleotide polymorphism; NC, non-carriers; C, carriers; PRU, platelet reaction units; 95%CI, 95% confidence interval; IQR, Inter quartile range. Significant p-values in bold.

*Tested with Mann-Whitney U.

** Tested with independent samples T-test.

Fig 3. PRU and inhibition.

Fig 3

The CYP2C19*17 allele was found in 30.4% of patients, and six were homozygote for the *17 allele (Table 2). There was no difference in PRU between the groups (p = 0.08), but higher inhibition values were found in *17 carriers (p = 0.02; 95%CI: -25;-2) (Table 3).

We found no difference in the prevalence of *2 carriers amongst the 26 previous HTPR patients compared to the rest of the population (6/26 vs 25/77; p = 0.37).

For the remaining examined SNPs, no associations between SNPs and PRU or SNPs and % inhibition were found (Table 3).

Since no patients showed HTPR on 75 mg clopidogrel/day, the dose of clopidogrel was never increased.

Discussion

In this observational study, we found that patients with IS and TIAs during long-term treatment with 75 mg clopidogrel/day all showed sufficient phenotypic antiplatelet responses, regardless of their genotype. Even patients who exhibited clopidogrel HTPR in the acute IS or TIA phase showed sufficient antiplatelet responses during long-term low-dose clopidogrel treatment.

The results from the 26 patients with PRU values from the hyper-acute phase indicate that HTPR status shifts with continued medical therapy. Furthermore, even though these patients show higher PRU values during long-term treatment than the rest of the patient population, they are not high enough to determine HTPR. Studies in patients with CVD have found that HTPR status can shift over time, not only from HTPR to non-HTPR, but also vice versa [17]. Other studies report results similar to ours, namely that with continued treatment, some patients with HTPR shifted to non-HTPR [12, 18, 19]. HTPR in the acute stroke phase might be explained by platelet hyper-reactivity [20, 21]. A combination of increased platelet reactivity in the acute stroke phase and some patients taking longer than 7‒10 days to achieve full platelet inhibition might explain the lack of patients with HTPR in our study, since the median clopidogrel treatment time was 69 days (IQR: 30‒503). However, our conclusion from the present study is that patients with IS or TIAs who receive long-term clopidogrel treatment at a dose of 75 mg/day have sufficient antiplatelet responses.

Carriers of the CYP2C19*2 LOF allele showed higher platelet reactivity (higher PRU values) than non-carriers, as well as higher PRU values with increasing numbers of the CYP2C19*2 allele. However, their values were still not high enough to determine HTPR. We also found that carriers of the CYP2C19*17 GOF allele showed increased platelet inhibition compared to non-carriers.

While several studies have examined the associations between carrying specific SNPs, ex vivo platelet function, and the risk of recurrent stroke or vascular events, the results are conflicting. A meta-analysis by Pan et al. published in January 2017 [9] concluded that carriers of CYP2C19 LOF SNPs have a higher risk of stroke and vascular events than non-carriers among clopidogrel-treated patients with previous strokes or transient ischemic attacks. In this meta-analysis, platelet function was not explored. However, in a study by Han et al. [6], CYP2C19 LOF SNPs had a significant impact on platelet responses, but were not associated with clinical endpoints (ischemic events and bleeding). Yet again, Fiolaki et al. [3] found an increased risk of recurrent IS or TIAs in patients with HTPR. In their analysis, SNPs were not examined.

The majority of the studies are conducted in Asian populations that have been shown to differ genetically from white populations. The prevalence of CYP2C19*2 carriers is higher in Asian than in white populations, while the CYP2C19*17 allele is rare in Asian but frequent in white populations [22]. The frequencies of CYP2C19*2 and CYP2C19*17 in our study were 30.7% and 30.4%, respectively, which is much higher than what the Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines for CYP2C19 genotype and clopidogrel therapy in white patients indicate [22], but are in line with previous studies in patients with CVD and stroke [23, 24]. Despite 30.7% of patients carrying the *2 LOF allele, none showed clopidogrel HTPR.

One might have expected the prevalence of *2 to be higher in the 26 patients with PRU values from the hyper-acute phase, as an explanation for their acute state and the persistently higher PRU values, but this was not the case. The distribution of the CYP2C19*2 allele in the 26 patients with acute-phase HTPR did not differ from the rest of the population in our study. We did find that long-term PRU values increase with the number of *2 alleles, but there does not seem to be an association with acute-phase PRU values. However, acute-phase PRU values seem to predict persistently higher PRU values. We acknowledge that we did not have any patient who we knew to have non-HTPR in the acute phase for comparison. Similarly, previous studies have found no association between the CYP2C19*2 allele and HTPR [25], and the clinical relevance of the *2 allele has been questioned [11, 26].

Several studies have investigated the effects of different SNPs on the clopidogrel metabolism, and apart from the CYP2C19*2 allele, there is no evidence that other SNPs alone play any role in clopidogrel resistance. However, it has been suggested that the combination of several SNPs is important, rather than the effect of any SNP alone [27].

The present study has several limitations. The small sample size prevented us from conducting a sub-group analysis on selected SNPs as well as on the interactions between SNPs. A post-hoc effect size analysis resulted in very small to small effect sizes (Cohens d: 0.01‒0.4) for all SNPs except for CYP2C19*2. The relatively small sample size might also be the reason that we did not find any patients with HTPR.

One could argue that we should have chosen a different way of determining HTPR. We have used the widely accepted dichotomization of the PRU value. We have even set the value at 208, based on the results from the GRAVITAS trial, to increase sensitivity [28]. In spite of that, we did not find any patients with HTPR. Another way to determine HTPR is to look for platelet inhibition >20% or use a longitudinal definition of HTPR, as proposed by Tobin [29]. This would however have required a completely different study design, with blood samples collected prior to treatment initiation.

We cannot rule out selection bias in our study, since the patients who are most disabled from their stroke will hesitate to participate in a study that requires traveling from their home or care facility to a hospital. Hence, patients with TIAs or minor stroke are more likely to participate in such studies.

The lack of a clinical end point leaves us unable to determine if the most important factor in the risk of recurrent stroke or vascular events are different SNPs or phenotypic platelet resistance.

In conclusion, we find that patients with ischemic stroke undergoing long-term treatment with 75 mg clopidogrel/day do not have HTPR. Even in a group of patients with HTPR in the acute stroke phase, we did not find any patients with HTPR. Carriers of the CYP2C19*2 allele did have higher PRU values than non-carriers, but their values were not high enough to determine HTPR. In conclusion, a genetic analysis of CYP2C19*2 in white patients seems futile in determining the patient’s long-term treatment clopidogrel resistance. Acute-phase PRU values seem to predict persistently higher PRU values. An adequately powered observational study with a long-term follow-up and clinical outcomes assessing both genetic differences and, repeatedly, measures of platelet inhibition in patients with ischemic stroke is much needed.

Supporting information

S1 Data

(DOCX)

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

T.W. Grant number NNF14OC0012727. Novo Nordisk Foundation. URL: https://novonordiskfonden.dk/en/ The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

Pablo Garcia de Frutos

10 Dec 2019

PONE-D-19-31152

CLOPIDOGREL RESPONDER STATUS IS UNINFLUENCED BY CYP2C19*2 IN DANISH PATIENTS WITH STROKE

PLOS ONE

Dear Ms Rath,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The manuscript has been reviewed by two experts in the field. They find a series of specific-minor comments that have to be considered by the authors, including discussing some important studies in the field. Of more importance is the discussion brought by one of the reviewers on the prevalence and determination of high on treatment platelet reactivity in the studied group. It seems to be at odds with other studies in the field. The recomendations of the reviewer should be consdered, including a re-analysis of the results with the suggested cut-off values for PRU.

We would appreciate receiving your revised manuscript by Jan 24 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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We look forward to receiving your revised manuscript.

Kind regards,

Pablo Garcia de Frutos

Academic Editor

PLOS ONE

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https://doi.org/10.1016/j.jstrokecerebrovasdis.2018.05.027

In your revision ensure you cite all your sources (including your own works), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: No

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: It is a pharmacogenetic study that evaluates the influence of CYP2C19, CYP3A4, NR1I2 and PR2Y12 polymorphisms in the response to clopidogrel in patients with a history of stroke or transient ischemic attacks.

As expect, they found a relationship between CYP2C19 polymorphisms and platelet reaction unit (PRU) but no relation with the other genes. Surprisingly, they did not find a relation of CYP2C19 polymorphisms with high-on-treatment platelet reactivity (HTPR) to clopidogrel, a way to measure no-response to this drug. This can be explain by a methodological error in the measurement of PRU because the incidence of HTPR in other studies varies from 8 to 61% (mean 27%) and the prevalence in this study is 0%. How can we be sure that PRU results are reliable? If there are no HTPR patients, it is impossible to find an association with any factor.

Moreover, HTPR was defined as an PRU value >208 and other studies use a cut-off of >185 (see Saiz-Rodríguez et al. Influence of CYP450 Enzymes, CES1, PON1, ABCB1, and P2RY12 Polymorphisms on Clopidogrel Response in Patients Subjected to a Percutaneous Neurointervention. Clin Ther. 2019 Jun;41(6):1199-1212).

On the other hand, the influence of concomitant medication, as proton pump inhibitors (PPI), that inhibit CYP2C19 has not been evaluated. More CYP2C19 wild type patients are receiving PPI (34.3%) than CYP2C19*2 carriers (16.1%) and this difference can influence the comparison of the two groups.

Reviewer #2: Abstract: HTPR: is not explained in the abstract

Introduction: The aim of the study sholud be mention in the Intruduction section.

Please indicated the reasosns for investigated the named SNPs: CYP2C19*2 (rs4244285), *3 (rs4986893), and *17 (rs12248560), and CYP3A4*1G (rs2242480).

NR1I2 (rs13059232), P2RY12 (rs2046934 and rs6785930), and P2Y12 (rs9859552)

Method: The authors should explainne why they use PCR_RFLP mathod and competitive allele-specific PCR (KASP) for genotyping of CYP2C19*2 (rs4244285), *3 (rs4986893) SNPs? By KASP they may genotyped also competitive allele-specific PCR (KASP). I do not understand why they used also PCR-RFLP method

Why the authors did not exclude the cases with undetermined SNPs.?

In Results section: Please check and reformulate „ In 1-4 patients the SNP the examined SNP was undetermined.” It is not clear..... Patient number 10 (from Supplemental material has only two SNPs determined.and 6 undetermined. Why he was not excluded from the study ?

The authors should discus also another study performe in europeans patients (189 clopidogrel-treated patients with acute coronary syndromes and noncardiogenic ischemic stroke).

Mărginean A, et al. The Impact of CYP2C19 Loss-of-Function Polymorphisms, Clinical, and Demographic Variables on Platelet Response to Clopidogrel Evaluated Using Impedance Aggregometry. Clin Appl Thromb Hemost. 2017 Apr;23(3):255-265. doi: 10.1177/1076029616629211. Epub 2016 Jul 9

**********

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Reviewer #1: Yes: Francisco Abad-Santos

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.]

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Decision Letter 1

Pablo Garcia de Frutos

6 Feb 2020

PONE-D-19-31152R1

CLOPIDOGREL RESPONDER STATUS IS UNINFLUENCED BY CYP2C19*2 IN DANISH PATIENTS WITH STROKE

PLOS ONE

Dear Ms Rath,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The study has been evaluated by one reviewer, that considers that there are two issues remaining in the present version. The authors should respond to these issues by analyzing the influence of PPI treatment and discussing the possible cause of the low incidence of HTPR in their study compared to other studies.

We would appreciate receiving your revised manuscript by Mar 22 2020 11:59PM. When you are ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter.

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). This letter should be uploaded as separate file and labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. This file should be uploaded as separate file and labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. This file should be uploaded as separate file and labeled 'Manuscript'.

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out.

We look forward to receiving your revised manuscript.

Kind regards,

Pablo Garcia de Frutos

Academic Editor

PLOS ONE

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: There are several questions that have not been answered:

1. The authors did not find any patient with high-on-treatment platelet reactivity (HTPR) to clopidogrel, when the incidence of HTPR in other studies varies from 8 to 61% (mean 27%). How can we be sure that platelet reaction unit (PRU) results are reliable?

2. They justify that they measured PRU values not in the acute phase (at least 14 days after stroke or TIA) which is probably why they have not found any patients with HTPR. This should be commented in the discussion and some references should be included to support this argument.

3. The influence of PPI treatment should be statistically analysed as well as their interaction with CYP2C19 polymorphisms; this information should be included in results and commented in discussion.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files to be viewed.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email us at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2020 Dec 28;15(12):e0236260. doi: 10.1371/journal.pone.0236260.r004

Author response to Decision Letter 1


26 Jun 2020

Response to reviewers.

Please see responses below. We hope you find them satisfactional.

Reviewer #1:

1) The authors did not find any patient with high-on-treatment platelet reactivity (HTPR) to clopidogrel, when the incidence of HTPR in other studies varies from 8 to 61% (mean 27%). How can we be sure that platelet reaction unit (PRU) results are reliable?

Answer: We have followed all instructions from the manufacturer regarding blood sampling and analysis. All blood sampling and analysis were done by staff familiar with the procedures.

2) They justify that they measured PRU values not in the acute phase (at least 14 days after stroke or TIA) which is probably why they have not found any patients with HTPR. This should be commented in the discussion and some references should be included to support this argument.

Answer: We believe this is already addressed. Please see yellow highlighted section in the discussion.

3) The influence of PPI treatment should be statistically analysed as well as their interaction with CYP2C19 polymorphisms; this information should be included in results and commented in discussion

Answer: The aim of this study is not to investigate whether different PPI´s affect clopidogrelresponse. The study is not sufficiently powered to investigate different types of PPI´s. We are not aware of any study that has found different PPI´s in patients treated with clopidogrel to have an effect on clinical outcome.

Attachment

Submitted filename: Response to reviewers june 2020.docx

Decision Letter 2

Pablo Garcia de Frutos

6 Jul 2020

CLOPIDOGREL RESPONDER STATUS IS UNINFLUENCED BY CYP2C19*2 IN DANISH PATIENTS WITH STROKE

PONE-D-19-31152R2

Dear Dr. Rath,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Pablo Garcia de Frutos

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Although the aim of this study is not to investigate whether different PPIs affect clopidogrel response, it would be interesting to evaluate the influence of PPI treatment as well as their interaction with CYP2C19 polymorphisms. There is a previous study (Saiz-Rodríguez et al. Influence of CYP450 Enzymes, CES1, PON1, ABCB1, and P2RY12 Polymorphisms on Clopidogrel Response in Patients Subjected to a Percutaneous Neurointervention. Clin Ther. 2019;41(6):1199-1212.e2) that evaluates the influence of different PPIs in patients treated with clopidogrel to have an effect on clinical outcome.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Acceptance letter

Pablo Garcia de Frutos

15 Jul 2020

PONE-D-19-31152R2

CLOPIDOGREL RESPONDER STATUS IS UNINFLUENCED BY CYP2C19*2 IN DANISH PATIENTS WITH STROKE

Dear Dr. Rath:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

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PLOS ONE Editorial Office Staff

on behalf of

Dr. Pablo Garcia de Frutos

Academic Editor

PLOS ONE

Associated Data

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    Submitted filename: Response to reviewers june 2020.docx

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