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. 2020 Nov 12;49(D1):D1555. doi: 10.1093/nar/gkaa1143

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes

Samuel M D Seaver 1, Filipe Liu 2, Qizhi Zhang 3, James Jeffryes 4, José P Faria 5, Janaka N Edirisinghe 6, Michael Mundy 7, Nicholas Chia 8, Elad Noor 9, Moritz E Beber 10, Aaron A Best 11, Matthew DeJongh 12, Jeffrey A Kimbrel 13, Patrik D’haeseleer 14, Sean R McCorkle 15, Jay R Bolton 16, Erik Pearson 17, Shane Canon 18, Elisha M Wood-Charlson 19, Robert W Cottingham 20, Adam P Arkin 21, Christopher S Henry 22,
PMCID: PMC7778962  PMID: 33179751

Nucleic Acids Research, gkaa746, https://doi.org/10.1093/nar/gkaa746

In the Abstract, the url https://modelseed.org has been replaced with https://modelseed.org/biochem.

Contributor Information

Samuel M D Seaver, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Filipe Liu, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Qizhi Zhang, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

James Jeffryes, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

José P Faria, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Janaka N Edirisinghe, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.

Michael Mundy, Center for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.

Nicholas Chia, Center for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA.

Elad Noor, Department of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, CH-8093 Zürich, Switzerland.

Moritz E Beber, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, 2800, Denmark.

Aaron A Best, Department of Biology, Hope College, Holland, MI 49423, USA.

Matthew DeJongh, Department of Computer Science, Hope College, Holland, MI 49423, USA.

Jeffrey A Kimbrel, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA.

Patrik D’haeseleer, Biosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA.

Sean R McCorkle, Computational Science Initiative, Brookhaven National Laboratory, Upton, NY 11973, USA.

Jay R Bolton, Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Erik Pearson, Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Shane Canon, Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Elisha M Wood-Charlson, Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Robert W Cottingham, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA.

Adam P Arkin, Environmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

Christopher S Henry, Computing, Environment, and Life Sciences Division, Argonne National Laboratory, Lemont, IL 60439, USA.


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