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. 2021 Jan 11;8:12. doi: 10.1038/s41597-020-00787-6

Addendum: A dataset mapping the potential biophysical effects of vegetation cover change

Gregory Duveiller 1,, Josh Hooker 1, Alessandro Cescatti 1
PMCID: PMC7801502  PMID: 33431839

Addendum to: Scientific Data 10.1038/sdata.2018.14, published online 20 February 2018

The original dataset1 provides spatialised estimates of how a series of biophysical environmental variables (e.g. daytime land surface temperature, latent heat, etc.) would locally change following potential changes in vegetation cover. The data-driven methodology imposed a limitation on the spatial extent over which these estimates could be made, as it required both source (what is transitioned from) and target (what is transitioned to) vegetation cover types to co-exist within a local moving window. To provide a more widespread spatial coverage as required by some users, this second version of the dataset has been expanded to places where only one of the two vegetation classes involved in a given transition occurs. This is achieved using Random Forests2, a non-linear regression tree approach, to predict the change in biophysical variables based on local climate. The method employed is described in (Duveiller et al. 2020)3, but is here applied using the updated version ts4.04 of the CRU climate dataset4 and an extra climatic predictor describing snow presence (as the cumulated precipitation during days with negative temperatures in degree Celsius). The other predictors are mean temperature, temperature range, cumulated precipitation and an aridity index.

Both the original and updated datasets are now hosted in the JRC Data Catalogue5.

More specifically, the new version (v2.0) of the dataset is available at: https://jeodpp.jrc.ec.europa.eu/ftp/jrc-opendata/ECOCLIM/Biophysical-effects-vgt-change/v2.0/ this new version supersedes the previous version (v1.0), which can still be found either at either: https://jeodpp.jrc.ec.europa.eu/ftp/jrc-opendata/ECOCLIM/Biophysical-effects-vgt-change/v1.0/; or at: figshare6.

Code necessary to transform v1.0 to v2.0 is available at Zenodo7.

The updated data have the same format as before, but now contain an extra variable with an *_ext* suffix, which is the spatially extended version. The original data (without the *_ext* suffix) are also available in each file. Note that over the same location both will differ as the extended version is in effect performing a smoothing operation due to the climate-based interpolation. Finally, the file sizes have been substantially reduced by using the internal compression within the netCDF files.

References

  • 1.Duveiller G, Hooker J, Cescatti A. A dataset mapping the potential biophysical effects of vegetation cover change. Sci Data. 2018;5:180014. doi: 10.1038/sdata.2018.14. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Breiman L. Random Forests. Machine Learning. 2001;45:5–32. doi: 10.1023/A:1010933404324. [DOI] [Google Scholar]
  • 3.Duveiller G, et al. Local Biophysical Effects of Land Use and Land Cover Change: Towards an Assessment Tool for Policy Makers. Land Use Policy. 2020;91:104382. doi: 10.1016/j.landusepol.2019.104382. [DOI] [Google Scholar]
  • 4.Harris I, Osborn TJ, Jones P, et al. Version 4 of the CRU TS monthly high-resolution gridded multivariate climate dataset. Sci Data. 2020;7:109. doi: 10.1038/s41597-020-0453-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Duveiller, G., Hooker, J. & Cescatti, A. Potential biophysical effects of vegetation cover change. Joint Research Center Data Catalogue10.2905/F97E4216-E81C-4DFB-B42D-D0C19070D029 (2018).
  • 6.Duveiller G, Hooker J, Cescatti A. 2018. A dataset mapping the potential biophysical effects of vegetation cover change. figshare. [DOI] [PMC free article] [PubMed]
  • 7.Duveiller G, 2020. Code to spatially expand a dataset of potential biophysical effects of vegetation cover change (Version v1.0.0) Zenodo. [DOI]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Citations

  1. Duveiller G, Hooker J, Cescatti A. 2018. A dataset mapping the potential biophysical effects of vegetation cover change. figshare. [DOI] [PMC free article] [PubMed]
  2. Duveiller G, 2020. Code to spatially expand a dataset of potential biophysical effects of vegetation cover change (Version v1.0.0) Zenodo. [DOI]

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