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PLOS One logoLink to PLOS One
. 2021 Jan 14;16(1):e0240068. doi: 10.1371/journal.pone.0240068

A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells

Swaha Satpathy 1,¤,*, Arjun Patra 1, Muhammad Delwar Hussain 2,*, Mohsin Kazi 3, Mohammed S Aldughaim 4, Bharti Ahirwar 1
Editor: Branislav T Šiler5
PMCID: PMC7808586  PMID: 33444328

Abstract

Pueraria tuberosa (Roxb. ex Willd.) DC., known as Indian Kudzu belongs to family Fabaceae and it is solicited as “Rasayana” drugs in Ayurveda. In the present study, we analyzed the efficacy of an ethyl acetate fraction from the tuber extract of Pueraria tuberosa (fraction rich in antioxidant compounds, FRAC) against menopausal osteoporosis, and breast and ovarian cancer cells. The FRAC from Pueraria tuberosa was characterized for its phenolic composition (total phenolic and flavonoid amount). Antioxidant property (in vitro assays) of the FRAC was also carried out followed by the analysis of the FRAC for its antiosteoporotic and anticancer potentials. The antiosteoporotic activity of FRAC was investigated in ovariectomy-induced osteoporosis in rats. The cytotoxicity effect was determined in breast and ovarian cancer cells. Gas chromatography/mass spectrometry (GC/MS) analysis of the FRAC was performed to determine its various phytoconstituents. Docking analysis was performed to verify the interaction of bioactive molecules with estrogen receptors (ERs). The FRAC significantly improved various biomechanical and biochemical parameters in a dose-dependent manner in the ovariectomized rats. FRAC also controlled the increased body weight and decreased uterus weight following ovariectomy in rats. Histopathology of the femur demonstrated the restoration of typical bone structure and trabecular width in ovariectomized animals after treatment with FRAC and raloxifene. The FRAC also exhibited in vitro cytotoxicity in the breast (MCF-7 and MDA-MB-231) and ovarian (SKOV-3) cancer cells. Furthermore, genistein and daidzein exhibited a high affinity towards both estrogen receptors (α and β) in the docking study revealing the probable mechanism of the antiosteoporotic activity. GC/MS analysis confirmed the presence of other bioactive molecules such as stigmasterol, β-sitosterol, and stigmasta-3,5-dien-7-one. The FRAC from Pueraria tuberosa has potential for treatment of menopausal osteoporosis. Also, the FRAC possesses anticancer activity.

Introduction

The World Health Organization (WHO) defines osteoporosis as a decrease of bone mineral density (BMD) more than 2.5 standard deviations of the standard reference for BMD in young healthy women [1]. Osteoporosis deteriorates BMD, and bone architectural structure. It also enhances the risk of fracture. Besides, osteoporosis causes severe problems to the quality of life, such as disability, and even death [2]. The cause of osteoporosis is variation in bone-forming (osteoblastic) and bone-resorbing (osteoclastic) cell function [3]. Osteoporosis has the highest prevalence in senile people and severely affects about 50% of menopausal women worldwide. The number of people with age ≥60 years in India is estimated to be 315 million by 2050 from 35 million in 2013, signifying the possibility of higher incidence of osteoporosis [4]. A decrease in the level of estrogen is the key contributing feature for menopausal osteoporosis (MO) in women. The reduced estrogen causes diminished bone formation, enhanced bone resorption, and elevated production of proinflammatory cytokines such as IL-1, IL-6, IL-7, and TNF-α [5]. The occurrence of MO is increasing day by day because of inactive lifestyle, environmental vulnerability, amenorrhea, hormonal alterations, early inception of puberty, and ovarian disorders [6, 7]. Furthermore, several studies have demonstrated oxidative stress prevalent in MO declines the antioxidant defense, and these lowered antioxidant levels promote bone loss [8, 9]. Oxidative stress can reduce the life span of osteoblasts by inhibiting osteoblastic differentiation and promoting bone resorption by boosting the development and activity of osteoclasts, thus causing osteoporosis. In MO, the activated osteoclasts produce reactive oxygen species like superoxides and a rise in the malondialdehyde level in blood. These oxidative stresses also contribute to bone loss in osteoporosis [4]. Antioxidants can be useful in the management of MO by normalizing the altered osteoblastic and osteoclastic functions [10].

Several drugs, such as estrogens, biphosphonates, and parathyroid hormone analogs are used for the inhibition and management of osteoporosis. They promote bone formation or decrease bone resorption or both [11]. However, these treatments are characterized by serious concerns related to their safety and efficacy. Estrogen therapy is not preferred in patients with hepatopathy and venous embolism. Also, there is high possibility of developing breast, cervical, and ovary cancer, development of heart disease and stroke upon long-term use of estrogen [12]. Long-term application of biphosphonates shows adverse effects such as osteonecrosis of the jaw and atypical femoral fractures [13]. Parathyroid hormone analogs are however costly, and with patients needing daily injection, the analogs may cause adverse consequences like osteosarcoma [14]. Therefore, it is important to develop drugs from plant origin that has a protective effect on bone loss with fewer side effects. Plant-derived estrogenic compounds are known as “Phytoestrogens” and are accepted worldwide as safe treatments for MO [7]. The phytoestrogens mostly include isoflavones, isoflavanones, coumestans, flavanones, chalcones, and flavones [15]. A considerable number of plant drugs in the form of extracts, fractions, herbal preparations, and isolated molecules have been studied to prevent or control osteoporosis [16]. Although these plant-derived remedies are helpful in the management of MO, they may produce the side effects of supplemental estrogen [17, 18]. Hence, a search for safe, cheap, and effective plant-derived agents for the management of MO is required.

Different species of Pueraria such as Pueraria lobata, Pueraria mirifica, and Pueraria candollei var. mirifica have been studied as protective agents against bone loss [1921]. Pueraria tuberosa, known as Indian Kudzu belongs to the family Fabaceae, is used as “Rasayana” drugs in Ayurveda. It is used in various Ayurvedic preparations, traditional management of a wide range of ailments, and studied for an array of pharmacological activities. The plant is a rich source of various secondary metabolites and contains phytoestrogenic compounds such as puerarin, quercetin, genistein, and daidzein [22]. Despite the significant pharmacological and phytochemical potential, the antiosteoporotic activity of Pueraria tuberosa has not been explored. Our objective was to identify a fraction rich in antioxidant compounds (FRAC) from the tubers of the plant and investigate the antiosteoporotic and anticancer effect of the FRAC.

Materials and methods

Chemicals, reagents and kits

The following high grade chemicals were obtained commercially or as a generous gift: 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT) (Sigma-Aldrich, St Louis, MO, USA); raloxifene (Cipla Ltd., Goa, India); phosphorous, calcium, alkaline phosphatase (ALP), tartrate-resistant acid phosphatase (TRAP), hydroxyproline (HP), total cholesterol (TC) and triglyceride (TG) kits (Span Diagnostic Pvt. Ltd.); dimethyl sulfoxide (DMSO) and phosphate buffer saline (PBS) (Mediatech Inc., Manassas, VA, USA); xylazine (Indian Immunologicals Ltd., Hyderabad, India); ketamine (Neon Laboratories Limited, Thane, India); diclofenac (Troikaa Pharmaceuticals Ltd., Ahmedabad, India); gentamicin (Abbott, Pitampur, India); DPPH (1,1-diphenyl-2-picrylhydrazyl) (HIMEDIA Co. Ltd., India); ABTS (2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) assay kit (Sigma-Aldrich, MO, USA, Catalog Number MAK187); OxiSelect™ TAC Assay Kit (Cell Biolabs, Inc., San Diego, CA, USA; Catalog Number: STA- 360); fetal bovine serum (Mediatech, Manassas, VA); penicillin streptomycin solution 100X (10,000 IU/mL penicillin and 10,000 μg/mL streptomycin) (Mediatech, Manassas, VA) were procured.

Extraction of plant material and fractionation

Tubers of Pueraria tuberosa were collected from Bilaspur, Chhattisgarh, India, with the help of the traditional practitioners and authenticated through the ICAR-National Bureau of Plant Genetic Resources, Regional Station, Phagli, Shimla, India (No.: NBPGR-565-569). A voucher specimen has been preserved in the Institute of Pharmacy, GGU, Bilaspur for future references. The fresh tubers were cut into small pieces and dried under shade, then coarsely powdered and stored in an air-tight container until further use. The coarse powder material was extracted with ethanol using soxhlet apparatus. The extract was concentrated under reduced pressure using a rotary vacuum evaporator to obtain the mother extract (concentrated ethanol extract, PT). The concentrated extract was suspended in distilled water and successively fractionated by liquid-liquid partitioning with n-hexane, ethyl acetate and n-butanol. Finally, the remaining aqueous fraction was also prepared. All the fractions were dried and stored in an airtight container until further use.

Identification of fraction rich in antioxidant compounds (FRAC)

The mother extract (PT), n-hexane fraction (PT1), ethyl acetate fraction (PT2), n-butanol fraction (PT3) and aqueous fraction (PT4) were evaluated for the antioxidant potential (by DPPH assay, ABTS assay and finding total antioxidant capacity) and phenolic composition (by total phenolic and flavonoid content determination) to identify the best fraction rich in antioxidant compounds (FRAC).

DPPH assay. Scavenging of 1,1-diphenyl-2-picrylhydrazyl (DPPH) free radical by all the samples was measured spectrophotometrically [23]. Two milliliters of the samples of different concentrations were added to one milliliter of 0.2 mM DPPH solution prepared in methanol. Methanol was used as a control in place of the samples. The solutions were kept at room temperature for one hour in the dark, and then the absorbance was read at 517 nm. The potential of free radical scavenging was represented as the percentage inhibition of DPPH free radical and was calculated using the following formula. The concentration of samples producing 50% inhibition (IC50) was also determined.

%Inhibition=(CS)CX100

Where, C = absorbance of the control and S = absorbance of the sample.

ABTS assay

The antioxidant capacity of the samples was analyzed based on their ability to interact with ABTS radicals [24]. The assay was performed following the protocol provided with the assay kit from Sigma-Aldrich, MO, USA (Catalog Number MAK187). The kit components were Cu+2 reagent (Catalog Number MAK187A), assay diluent (Catalog Number MAK187B), protein mask (Catalog Number MAK187C), and Trolox standard, 1.0 μmole (Catalog Number MAK187D). Briefly, 10 μL of the sample, 90 μL of HPLC water, and 100 μL of Cu+2 working solution were transferred to each well in a 96 well plate. The contents were mixed thoroughly using a horizontal shaker and incubated in light protected condition at room temperature for 90 min. Finally, the absorbance was read at 570 nm, and the Trolox equivalent as μM/g of the sample was determined from the standard curve of Trolox.

Determination of total antioxidant capacity (TAC)

TAC, in terms of copper reducing equivalent (CRE) of the sample, was evaluated using OxiSelect™ TAC Assay Kit (Cell Biolabs, Inc., San Diego, CA, USA; Catalog Number: STA- 360) [25]. The components of the kit were uric acid standard (Part No. 236001), reaction buffer, 100X (Part No. 236002), copper ion reagent 100X (Part No. 236003) and stop solution, 10X (Part No. 236004). The assay protocol was as per the manufacturer’s product manual. Briefly, 20 μL of the sample in various concentrations and 180 μL of 1X reaction buffer were transferred to each well in a 96 well plate and mixed thoroughly. An initial absorbance was taken at 490 nm. The reaction was started by adding 50 μL of 1X copper ion reagent into each well and incubated on an orbital shaker for 5 min. Then the reaction was stopped by adding 50 μL of 1X stop solution to each well and absorbance was measured again. The net absorbance was calculated by subtracting the initial reading from the final reading and the mM uric acid equivalent (UAE) was determined from the uric acid standard curve. Finally, the CRE was determined by multiplying UAE by 2189.

Determination of total phenolic and flavonoid content

Folin-Ciocalteu method and aluminum chloride colorimetric method were adopted for determining total phenolic content (TPC) and total flavonoid content (TFC), respectively [26] by reconstituting the samples in methanol. For determination of TPC, 100 μL of the sample (1.0 mg/mL) was mixed with 125 μL of Folin-Ciocalteu reagent and 750 μL of sodium carbonate solution (15% w/v) in a test tube. The final volume was adjusted to 5 mL with deionized water and mixed properly. The mixture was incubated at room temperature in the dark for 90 min, and then the absorbance was read at 760 nm using a spectrophotometer (UV-1800, Shimadzu, Japan). A blank sample with water and reagents were prepared and used as a reference. TPC of the samples was represented as milligrams of gallic acid equivalents per gram dry weight (mg of GAE/g DW) of a sample through the calibration curve of gallic acid. For TFC estimation, 0.5 mL of sample (0.1 mg/mL) was mixed with 0.1 mL of AlCl3 (10%), 0.1 mL of potassium acetate (1 molar) and 1.5 mL of methanol (95%). The final volume was adjusted to 5 mL with distilled water and mixed thoroughly. The mixture was incubated in dark at room temperature for 60 min and then absorbance was measured at 415 nm. TFC was expressed as mg of rutin equivalents per gram (mg RE/g) of the sample through a standard curve of rutin. All measurements were carried out in triplicate.

Gas chromatography mass spectrometry (GC/MS) analysis of the FRAC

Ethyl acetate fraction was identified as the fraction rich in antioxidant compounds (FRAC). GC/MS analysis was carried out on a GC/MS system comprising of Thermo Tracer 1300 GC and Thermo TSQ 8000 MS. The GC was connected to an MS with the following conditions such as TG 5MS (30m X 0.25 mm X 0.25 μm) column, operating in electron impact [electron ionization positive (EI+)] mode at 70 eV, helium (99.999%) as carrier gas at a constant flow of 1 ml/min, S/SL injector, an injection volume of 1.0 μl (split ratio of 10:1), injection temperature 250°C and MS transfer line temperature 280°C. The oven temperature was programmed from 60°C (isothermal for 2 min), with a gradual increase in steps of 10°C/min to 280°C. Mass spectra were taken at 70 eV, a scanning interval of 0.5 sec, and a full mass scan range from 50 m/z to 700 m/z. Data acquisition was carried out by Xcalibur 2.2 SP1 data acquisition software. Interpretation of the mass spectrum of GC/MS was performed by the NIST (National Institute Standard and Technology) mass spectral search program for the NIST/EPA/NIH mass spectral library version 2.0 g. NIST 11. The mass spectrum was compared with the spectrum of the components stored in the NIST library. The chemical name, molecular formula, and molecular weight of the compounds were determined.

Antiosteoporotic activity

Animals

Virgin female Wistar rats weighing 220–250 g were housed in polypropylene cages (two per cage) in an air-conditioned room at 23±1°C, the relative humidity of 50–60% and 12 h/12 h light/dark illumination cycle. The animals were provided free access to diet and water. The animal use and experimental protocol (Reference No.: 119/IAEC/Pharmacy/2015) was approved by the Institutional Animal Ethical Committee (IAEC) of the Institute of Pharmacy, Guru Ghasidas University, Bilaspur, Chhattisgarh (Reg. No.: 994/GO/Ere/S/06/CPCSEA) under the guidelines of CPCSEA.

Acute oral toxicity study

An OECD (The Organization for Economic Co-operation and Development) 423 guideline was employed to determine the acute oral toxicity of FRAC. The limit test was performed as per the guidelines on female rats (three rats per step) at a dose of 2000 mg/kg, orally and monitored for 14 days. The FRAC was suspended in carboxy methylcellulose (1.0%). No mortality or any signs of moribund status were found at this dose (2000 mg/kg). Therefore, the LD50 cut-off is 5000 mg/kg (category 5 in the Globally Harmonized Classification System). The dosages selected for the antiosteoporotic property were 100 and 200 mg/kg/day. Usually, 1/5th and 1/10th of the LD50 value can be used for animal experimentation and the dose selected (very small dose compared to LD50 cut-off, 5000 mg/kg) for screening antiosteoporotic activity, where the treatment was for 90 days. We have not observed and mortality of signs of toxicity during this 90 days period also.

Experimental protocol

The animals were acclimatized for seven days. On the seventh day, rats were ovariectomized and sham-operated after anesthetized with intraperitoneal administration of ketamine and xylazine. For ovariectomized (OVX) rats, the ovaries were bilaterally removed by a small midline skin incision. In the case of sham-operated rats, the ovaries were exposed and sutured back without removing them [27]. Postoperative care was taken by administering diclofenac and gentamicin, and individual housing of the animals for a few days. After four weeks, the animals were divided into five groups, each group containing six animals and received following treatment for 90 days.

  • Group I: Sham-operated and received 1% CMC (Sham control).

  • Group II: Ovariectomized animals and received 1% CMC (OVX control).

  • Group III: Ovariectomized animals treated with standard drug, raloxifene (1 mg/kg) (RAL).

  • Group IV: Ovariectomized animals treated with FRAC (100 mg/kg) (FRAC-100).

  • Group V: Ovariectomized animals treated with FRAC (200 mg/kg) (FRAC-200).

At the end of treatment, food was withheld from the animals for 24 h, and then urine samples were collected in metabolic cages. Urine samples were refrigerated until further investigation. Animals were euthanized by ether anesthesia, and blood samples were immediately withdrawn from the abdominal aorta. The blood samples were centrifuged at 2500 rpm for 25 min, serums were separated, and stored at -70°C until analysis. The uterus was taken out carefully after the blood withdrawal and weighed. The femur and fourth lumbar vertebrae were collected by detaching the connecting tissue and stored at -70°C until the biomechanical parameters were determined.

Determination of biochemical parameters

Various serum parameters were determined by using commercial assay kits. The parameters include calcium, phosphorus, alkaline phosphatase (ALP), tartrate-resistant acid phosphatase (TRAP), triglycerides (TG), and total cholesterol (TC). Hydroxyproline (HP), calcium, and phosphorus in urine were also determined as reported earlier [4, 11].

Determination of biomechanical parameters

Weight (by digital balance, CY 204, Citizon, India), length (between the proximal tip of the femur head and the distal tip of medial condyle), and thickness (using Vernier caliper) of the femurs were measured after drying overnight and removal of bone marrow. Bone volume (by plethysmometer, INCO Instruments & Chemicals Pvt. Ltd., Ambala, India) and bone density (mass/volume) were also determined. The breaking strength of the femur and fourth lumbar vertebrae were evaluated using a hardness tester [11, 28].

Determination of body weight and organ weight

Bodyweight of each animal was measured on the first day and the last day of treatment. Uterus weight was also measured immediately after its removal and detachment of uterine horns, fat, and connective tissues [11, 29]. The uterus weight relative to body weight was also calculated.

Histopathology of the femur

The right femur was fixed in 10% formalin for 12 h at 4°C, decalcified in ethylenediamine tetraacetic acid (EDTA) for 7 days, dehydrated, defatted, embedded in paraffin wax, and sectioned in the sagittal plane (5 μm thickness) using a microtome. The sections were stained with hematoxylin and eosin (H & E) and examined for histopathological changes under a light microscope (Primo Star, Zeiss with AxioCam ERc 5s camera) [7].

In vitro cytotoxicity of fraction rich in antioxidant compounds (FRAC)

Breast (MCF-7 and MDA-MB-231) and ovarian (SKOV-3) cancer cells were cultured in Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. The cells were harvested and transferred to 96-well plates at a density of 3000 cells/well. The plates were incubated at 37°C and 5% CO2. After 24 h, the medium was replaced with fresh medium containing FRAC at various concentrations (31.5 to 500 μg/mL). The culture medium without any drug formulation was used as the control. After 72 h of incubation at 37°C and 5% CO2, the media was removed carefully, and cells were washed twice with sterile phosphate buffer saline (PBS). 50 μl of MTT solution (0.5 mg/ml in DMEM media) was put into each well and further incubated for 4.0 h in the same condition. The medium was then removed from each well, and 100 μl of DMSO was added to each well to dissolve the purple formazan crystal obtained from the MTT assay. The absorbance value of each well was read at 570 nm using a microplate reader (Varioskan Flash, Thermo Scientific, USA). The percent cell viability with different treatments was calculated from the following formula [7, 30].

%CellViability=AbsorbanceofTestAbsorbanceofControlX100

Docking study of the identified phytoconstituents in FRAC

In our earlier study, we have reported the presence of genistein and daidzein in the fraction rich in antioxidant compounds (the ethyl acetate fraction) of Pueraria tuberosa [31]. A docking study of these two compounds with estrogen receptor α (1x76) and estrogen receptor β (1x7R) [ER-α and ER-β] was performed to elucidate the mode of their interaction. The values of the grid box (x, y and z) are, 1x7R: 15.587, 32.224, 22.304 and 1x76: 29.554, 37.747, 38.951. All computational studies were carried out using FlexX LeadIT 2.1.8 of BiosolveIT in a Machine running on a 2.4 GHz Intel Core i5-2430M processor with 4GB RAM and 500 GB Hard Disk with Windows 10 as the Operating System. The 3D conformer of the ligands was downloaded from PubChem in.sdf format. Reference protein coordinates of ER-α and ER-β for docking studies were obtained from X-ray structures deposited in Protein Data Bank (http://www.rcsb.org). For protein preparation, the chain having the receptor was selected as receptor components. Then reference ligand was selected. 3D conformer (.sdf) of daidzein and genistein were downloaded from PubChem website and used as ligand. FlexX uses only 3D conformer of ligands. All the chemical ambiguities, which were crystallographically unresolved structures, were resolved, and the receptor was confirmed. The docking process deals with the translational, torsional, and ring conformation degrees of freedom. It was done by “Define Flex Docking” utility, and the FlexX accurately predicted the geometry of the protein-ligand complex within a few seconds. Then the docking was done using default parameters using a hybrid approach, followed by visualization using Pose View. The best conformation for each ligand sorted by the final binding affinity was stored [32].

ADME prediction

ADME (Absorption, Distribution, Metabolism and Excretion) is a key aspect to predict the pharmacodynamics of the molecule under study which could be used as a future lead molecule for drug development. SWISSADME is an online web server developed and maintained by the Molecular Modeling Group of the Swiss Institute of Bioinformatics (SIB) (https://www.swissadme.ch) (SIB, 2019). We have evaluated the ADME profiles of both the compounds under study as they showed good interaction with estrogen receptors. To compute ADME parameters, already prepared structures of ligands/molecules were uploaded individually in Marvin JS section provided in the website, http://swissadme.ch/index.php. Structures were auto converted to SMILES format and then ADME was predicted by the server. Results obtained were saved for further analysis.

Toxicity prediction

Prediction of toxicity is an important aspect for all molecules. The pkCSM is a web server database in which analysis of molecules are done by drawing the small molecule virtually or by submitting the SMILES format of the same. The web server database (http://biosig.unimelb.edu.au/pkcsm/prediction) provides details of toxicity namely AMES toxicity, maximum tolerated dose, hepatotoxicity, skin sensitization, hERG I and II inhibitor. The website was logged on and the SMILES of both the molecules were searched and submitted into the website and toxicity was selected in prediction mode [33]. Finally, results were obtained.

Statistical analyses

Data were presented as mean ± standard error means (SEMs). The data obtained in antiosteoporotic activity were subjected to one-way analysis of variance (ANOVA) followed by Newman-Keuls multiple comparisons for significance using GraphPad Prism 7.0 (GraphPad Software, La Jolla, CA, USA) software. A value of p < 0.05 was considered statistically significant.

Results

Characterization of the fraction rich in antioxidant compounds

The antioxidant potential of different samples (ethanol extract, and n-hexane, ethyl acetate, n-butanol and aqueous fractions) was evaluated based on their phenolic composition (total phenolic and flavonoid content as gallic acid equivalent and rutin equivalent, respectively), and antioxidant potential (by DPPH method, ABTS assay and determining total antioxidant capacity). The ethyl acetate fraction (PT2) contained maximum phenolics and antioxidant activity (Tables 1 and 2), and chosen as the fraction rich in antioxidant compounds (FRAC). This fraction was further analyzed for antiosteoporotic and anticancer activities.

Table 1. Total phenolic and flavonoid content, and antioxidant potential of ethanol extract and different fractions of Pueraria tuberosa.

Sample TPC (mg GAE/g DW) TFC (mg RE/g DW) IC50 (DPPH method) (μg/mL) μM Trolox equivalent/g sample (ABTS assay)
PT 12.0 ± 0.70 40.26 ± 0.83 597.5 ± 7.89 376.13 ± 8.72
PT1 0.95 ± 0.07 2.19 ± 0.35 1396.72 ± 15.85 45.87 ± 3.79
PT2 106.23 ± 1.66 261.9 ± 1.73 55.70 ± 3.15 907.51 ± 8.07
PT3 56.0 ± 1.30 25.56 ± 0.65 110.27 ± 10.41 360.26 ± 8.35
PT4 26.46 ± 1.66 12.67 ± 0.77 291.08 ± 6.33 92.10 ± 4.84

Values are mean ± SEMs (n = 3). PT, ethanol extract of Pueraria tuberosa; PT1, n-hexane fraction; PT2, ethyl acetate fraction; PT3, n-butanol fraction; PT4, aqueous fraction; TPC, total phenolic content; TFC, total flavonoid content; GAE, gallic acid equivalent; DW, dry weight; RE, rutin equivalent; IC50, the concentration that provides a reduction of 50%; DPPH, 1,1-diphenyl-2-picrylhydrazyl; ABTS, 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid).

Table 2. Copper reducing equivalent of ethanol extract and different fractions of Pueraria tuberosa at different concentrations.

Concentration (μg/mL) Copper reducing equivalent
PT PT1 PT2 PT3 PT4
12.5 4.38±0.10 2.19±0.04 6.57±0.30 6.79±0.62 5.47±0.08
25 5.47±0.18 4.38±0.07 21.89±0.62 9.41±0.30 5.91±0.04
50 6.57±0.22 5.47±0.11 35.02±0.48 9.85±0.28 6.57±0.12
100 8.76±0.12 9.85±0.22 72.24±2.12 10.07±0.80 9.85±0.34
200 10.95±0.28 15.32±0.56 113.83±1.62 26.27±0.74 13.13±0.82

Values are mean ± SEMs (n = 3); PT, ethanol extract; PT1, n-hexane fraction; PT2, ethyl acetate fraction; PT3, n-butanol fraction; PT4, aqueous fraction.

GC/MS analysis of FRAC

FRAC from Pueraria tuberosa contained 23 different chemical moieties (S1 Table) including stigmasterol, β-sitosterol, and stigmasta-3,5-dien-7-one.

Antiosteoporotic activity

The antiosteoporotic potential of FRAC of Pueraria tuberosa was evaluated in ovariectomized-induced osteoporosis in female rats by determining the following parameters:

Effect of FRAC on biochemical parameters in serum and urine

Both serum and urine were analyzed for the levels of phosphorous (P) and calcium (Ca) (Figs 1 and 2). In the OVX control group, as well as in other treatments, there was no significantly change in serum P and Ca. The level of P and Ca in urine increased significantly in the OVX group over sham control. Administration of both doses of FRAC and raloxifene significantly reduced (p<0.05) the OVX-induced increase in urine levels of P and Ca. Levels of bone markers, ALP and TRAP were significantly enhanced (p<0.001) after OVX. Both ALP and TRAP levels were reduced significantly (p<0.001) and dose-dependently after FRAC treatment (versus OVX). Serum ALP and TRAP level were also reduced significantly (p<0.001) after raloxifene treatment (Fig 1). The OVX caused a significant increase (p<0.001) in the level of urine hydroxyproline (HP) compared to sham control. However, the level of HP in raloxifene and FRAC (100 and 200 mg/kg) treated groups were distinctly lowered (p<0.001) compared to the OVX group (Fig 2). The level of TC and TG increased significantly (p<0.001) in the OVX group compared to the sham control group (Fig 1). These increased TC and TG level was markedly lowered (p<0.01) by FRAC and raloxifene treatment. TG levels in raloxifene and FRAC-200 groups are comparable with the sham control, and FRAC exhibited a better effect over raloxifene.

Fig 1. Effect of FRAC from Pueraria tuberosa on biochemical parameters of serum.

Fig 1

Data were average ± SEM (n = 6). *** p < 0.001 significantly different from sham control group. ## p < 0.01, ### p < 0.001 significantly different from OVX group. Ca, calcium; P, phosphorus; ALP, alkaline phosphatase; TRAP, tartrate resistant acid phosphatase; TG, triglycerides; TC, total cholesterol.

Fig 2. Effect of FRAC from Pueraria tuberosa on biochemical parameters of urine.

Fig 2

Data were average ± SEM (n = 6). *** p < 0.01 significantly different from sham control group. # p < 0.05, ## p < 0.01, ### p < 0.001 significantly different from OVX group. Ca, calcium; P, phosphorus; HP, hydroxyproline.

Effect of FRAC on biomechanical parameters

None of the groups showed any significant alteration of femur length. Femur thickness, volume, weight, and breaking strength were significantly decreased (p<0.001) in the OVX control compared to the sham control group. A significant increase (p<0.05) in all these parameters (Figs 3 and 4) was observed with FRAC and raloxifene administration. Furthermore, OVX caused a significant reduction (p<0.01) of femur density, and treatment with FRAC showed a substantial improvement (p<0.05) of the femur density. Treatment with raloxifene and FRAC restored the breaking strength of the 4th lumbar vertebrae caused by ovariectomy (Fig 4).

Fig 3. Effect of FRAC from Pueraria tuberosa on femur biomechanical parameters.

Fig 3

Data were average ± SEM (n = 6). ** p < 0.01, *** p < 0.001 significantly different from sham control group. # p < 0.05, ## p < 0.01, ### p < 0.001 significantly different from OVX group.

Fig 4. Effect of FRAC from Pueraria tuberosa on breaking strength of femur and 4th lumbar vertebrae.

Fig 4

Data were average ± SEM (n = 6). *** p < 0.001 significantly different from sham control group. ## p < 0.01, ### p < 0.001 significantly different from OVX group.

Effect of FRAC on body and organ weight

A significant (p<0.001) increase in body weight (BW) was observed due to OVX though there was no significant variation at the start of the study. Treatment with FRAC and raloxifene markedly reduced (p<0.01) the increased BW (Fig 5) as well as the final and initial BW difference, compared to OVX. The OVX caused a marked reduction (p<0.001) in the uterus weight. In comparison, the administration of raloxifene, and FRAC significantly increased (p<0.001) uterine weight compared to the OVX group (Fig 5). The percentage of uterus weight relative to BW for group I, II, III, IV and V animals was 0.19, 0.05, 0.11, 0.07, and 0.09, respectively.

Fig 5. Effect of FRAC from Pueraria tuberosa on body and uterus weight.

Fig 5

Data were average ± SEM (n = 6). *** p < 0.001 significantly different from Sham control group. ## p < 0.01, ### p < 0.001 significantly different from OVX group.

Histopathology study

Photomicrographs of the femur of different groups of animals are depicted in Fig 6A–6E. There was a distraction of trabeculae with the decline in thickness and development of large cyst-like spaces following OVX. The photographs show trabecular ossification, mineralization, and compactness in the groups treated with raloxifene and FRAC. Raloxifene and FRAC generated antiosteoporotic activity in OVX rats.

Fig 6. Effect of FRAC of Pueraria tuberosa on the histopathology of the femur.

Fig 6

A, Photomicrography of the femur of sham control group showing typical bone architecture; B, Photomicrography of the femur of OVX control group showing disruption of trabeculae; C, Photomicrography of the femur of raloxifene treated group showing improved trabecular thickness, and compactness of cells indicating mineralization of bone; D, Photomicrography of the femur of FRAC-100 mg/kg treated group showing the improved trabecular thickness and bone architecture; E, Photomicrography of the femur of FRAC-200 mg/kg treated group showing the restoration of typical bone architecture and an increase in width of trabeculae.

In vitro cytotoxicity of FRAC

Postmenopausal osteoporosis, which typically causes weakness of bone as the process of bone-resorption exceeds bone-formation because of the estrogen-deficient state [34]. Hormone replacement therapy (HRT) is a choice to manage the problems in postmenopausal women, but continuous administration of HRT has the danger of cancer (breast, ovary, and endometrial) development [35]. Therefore, we assessed the in vitro anticancer activity of FRAC (31.5–500 μg/mL) in breast (MCF-7 and MDA-MB-231) and ovarian (SKOV-3) cancer cells. FRAC displayed anticancer activity against the three cancer cell lines in a dose-dependent manner (Fig 7). FRAC demonstrated better activity against ovarian cancer cells compared to breast cancer cells.

Fig 7. In vitro cytotoxicity of FRAC of Pueraria tuberosa against different cancer cell lines.

Fig 7

Values are mean ± SEMs (n = 3).

Docking study

High-performance thin layer chromatography analysis confirmed the presence of daidzein and genistein in FRAC of Pueraria tuberosa [31]. Docking pose of these phytoconstituents into estrogen receptor (ER) α (1 X 76) and β (1 X 7R) were evaluated and furnished in Figs 8 and 9. Genistein exhibited -26.1648 and -32.4084 docking score into ER- α and β active site, respectively. The docking score of daidzein into ER- α and β active site were -28.3129 and -31.8923, respectively. However, ER expression could be carried out in future. Docking analysis of internal ligands is shown in Fig 10.

Fig 8. Docking study of genistein in estrogen receptors.

Fig 8

A, Co-crystalized ligand of 1x76 (genistein) showing hydrogen bond with Arg346, Leu339, and His475. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor α (PDB: 1x76). The ligand showed a docking score of -26.1648. B, Co-crystalized ligand of 1x7R (genistein) showing hydrogen bond with Leu346, Arg394, Gly521, Glu353, and His524. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor β (PDB: 1x7R). The ligand showed a docking score of -32.4084.

Fig 9. Docking study of daidzein in estrogen receptors.

Fig 9

A, Docking pose of daidzein in estrogen receptor α (PDB: 1x76) active site with a docking score of -28.3129. Daidzein formed a hydrogen bond with Arg346, Glu305, and His475. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor α (PDB: 1x76). B, Docking pose of daidzein in estrogen receptor β (1 x 7R) active site with a docking score of -31.8923. Daidzein showed a hydrogen bond with Arg394, Glu353, Gly521 and His524. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor β (PDB: 1x7R).

Fig 10. Docking study of internal ligands on Ix76 and 1x7R receptors.

Fig 10

A, Docking pose of daidzein in estrogen receptor α (PDB: 1x76) active site with a docking score of -28.3129. Daidzein formed hydrogen bond with Arg346, Glu305, and His475. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor α (PDB: 1x76). B, Docking pose of 5-hydroxy-2-(4-hydroxyphenyl)-1-benzofuran-7-carbonitrile in estrogen receptor β (1 x 7R) active site with a docking score of -28.9356. 5-hydroxy-2-(4-hydroxyphenyl)-1-benzofuran-7-carbonitrile showed a hydrogen bond with Arg394, Glu353and His524. Hydrophobic interactions were also seen near the benzene rings with different amino acid residues of estrogen receptor β (PDB: 1x7R).

The ADMET profiles for these compounds as well as the drug-likeness prediction of the compounds are provided in Tables 3 and 4. Drug-likeness refers to the possibility of a molecule to become an oral drug regarding its bioavailability. Five different filters were employed to determine the drug & lead likeness for daidzein and genistein (Table 3). Both compounds revealed good drug-likeness score with zero violation of drug-likeness rules, and also exhibited a lead-likeness with no violation. They did not show any violations with reference to PAINS and Brenk method to determine the probable uncertain fragments that yield false-positive biological output. Lead likeness was also estimated along with the synthetic accessibility appraisal. The compounds that showed high scores were removed as they were tough to synthesize as per protocols. Daidzein and genistein could be synthesized easily as their scores were 2.79 and 2.87, respectively. Further, both the compounds have a bioavailability score of 55% (Table 3) indicating good oral absorption.

Table 3. Details of different drug-likeness rules, bioavailability, lead-likeness, synthetic accessibility, and alerts for PAINS and Brenk.

Compound Drug-likeness Rules Alerts Lead likeness Synthetic Accessibility
Lipinski (Pfizer) Ghose (Amgen) Veber (GSK) Egan (Pharmacia) Muege (Bayer) Bioavailability Score PAINS Brenk
Daidzein Yes Yes Yes Yes Yes 0.55 0 0 Yes 2.79
Genistein Yes Yes Yes Yes Yes 0.55 0 0 Yes 2.87

Table 4. Details of in-silico ADME profile of flavonoids using Swiss ADME online server.

ADMET PROFILE Daidzein Genistein
Physiochemical parameters Formula C15H10O4 C15H10O5
Molecular weight 254.24 g/mol 270.24 g/mol
Mol. refractivity 71.97 73.99
TPSA 70.67 Å2 90.90 Å2
Lipophilicity ILOGP 1.77 1.91
SILICOS-IT 3.02 2.52
Water Solubility Log S (ESOL), Class -3.53 -3.72
Log S (Ali), Class -3.60 -4.23
SILICOS-IT, Class -4.98 -4.40
Pharmacokinetics GI absorption High High
BBB permeant Yes No
Log Kp (skin perm.) -6.10 cm/s -6.05 cm/s
CYP1A2 Yes Yes
CYP2C19 No No
CYP2C9 No No
CYP2D6 Yes Yes
CYP3A4 Yes Yes

Discussion

Antioxidants play a major role in controlling menopausal complications, including osteoporosis [7]. In this study, we explored the in vivo antiosteoporotic and in vitro anticancer activities of an FRAC from the tubers of Pueraria tuberosa. Ethanol extract of tubers of Pueraria tuberosa and its various fractions (hexane, ethyl acetate, n-butanol, and aqueous) were analyzed for total phenolic and flavonoid content, and antioxidant activity. The ethyl acetate fraction showed maximum phenolic and flavonoid content, and antioxidant property (Tables 1 and 2), and was selected as the FRAC.

The antiosteoporotic activity of the FRAC was evaluated in OVX rats by determining biochemical and biomechanical parameters, body and organ weights, and histopathology (Figs 16). The pattern of change in bone mineral parameters such as P and Ca in the present study confirms earlier findings of minor bone mineralization and balanced mineral homeostasis [4]. The FRAC did not change homeostasis, which may be due to enhanced absorption of calcium from the intestine [4, 7]. ALP and TRAP (bone turnover markers) activity are signs of bone osteoblast functioning and factors of bone formation. OVX increased the level of these markers in serum because of the reduction in the estrogen level. HP is commonly accepted as a biochemical parameter associated with bone metabolism, and its level is a sign of osteogenic activity. Urinary HP which indicates a breakdown of collagen due to the high level of TRAP is formed from activated osteoclast [36]. Increased level of HP, TRAP, and ALP was observed in OVX group. Higher levels of these biochemical parameters indicate decreased bone formation and augmentation of collagen degradation. Administration of raloxifene and FRAC reversed this effect of the OVX indicating the bone resorption inhibition property of raloxifene and FRAC. FRAC treatment produced positive effects on OVX-induced hyperlipidemia which could be due to the existence of daidzein, genistein, and β-sitosterol in Pueraria tuberosa. Flavonoids are scavengers of reactive oxygen species (ROS). The ROS block TG secretion into the plasma and upset cholesterol catabolism into bile acids. Daidzein and genistein possess antihyperlipidemic effects [37]. Further, the presence of β-sitosterol in FRAC hinders the absorption of cholesterol by controlling lipogenesis and lipolysis [38].

It has been shown that reduction in bone mineral density in patients leads to bone loss and increased susceptibility of fracture [39]. Healthy bones are normally compact and can tolerate considerable load. The compactness of the bone could be assessed by determining bone strength. Ovariectomized (OVX) animal model, used in the current study is a common screening method for antiosteoporotic agents. The breaking strength of femur and 4th lumbar vertebrae was substantially increased by FRAC of Pueraria tuberosa showing the protective effect of FRAC against menopausal osteoporosis. The antiosteoporotic effect of the FRAC of Pueraria tuberosa is comparable to earlier studies with other plant materials [4, 7]. The phytoestrogens of FRAC might have augmented the osteoclast activity and reduced bone turnover.

The reduction of estrogen level in OVX animals causes an increase in energy intake and elevated body weight [40]. Further, the decrease in estrogen level due to OVX led to the deposition of fat (as shown in the rise of total cholesterol and triglyceride in serum) and hence an increase in body weight [11]. The FRAC administration reduced the level of cholesterol and TG in serum, and decreases the OVX-induced gain in body weight. These observations support the protective effect of FRAC against fat deposition and weight gain in menopausal osteoporosis [41].

Bone strength is associated with bone mass, as well as its structure. Hence, histopathological analysis is a significant parameter to analyze bone strength. OVX is associated with an increase in bone turnover, reduction in bone balance and loss in bone mineral density in the trabecular region of the femur [42]. The osteoprotective property of FRAC of Pueraria tuberosa manifested by superior trabecular architecture may be attributed its secondary metabolites that may work as phytoestrogens and minimize bone loss [43].

In our previous study, we reported the presence of two isoflavones, genistein and daidzein in the FRAC of Pueraria tuberosa [31]. In the present study, the phytoestrogenic nature of these two isoflavones was established by docking studies with estrogen receptor α and β, where both the compounds were found to have a good affinity with both the receptors. Estradiol has docking scores of -18 and -17 into estrogen receptor α and β active site, respectively [41]. The bioactive compounds, genistein and daidzein present in Pueraria tuberosa have higher affinity compared to estradiol, which is also supported by earlier studies as they showed high affinity for estrogen receptors [4446]. These two compounds may be mainly responsible for the antiosteoporotic property of the FRAC of Pueraria tuberosa.

Phytoestrogens have been used as an alternative therapy for the management of menopausal osteoporosis as the regular use of hormone replacement therapy causes severe side effects, including cancer of the breast and ovary [35]. Phytoestrogenic compounds also induce cell proliferation in ER-positive human breast cancer cells (MCF-7) [47]. However, in this study, FRAC exhibited anticancer property in breast and ovarian cancer cells, suggesting its suitability for the treatment of postmenopausal osteoporosis.

Conclusion

The FRAC of Pueraria tuberosa exhibited marked antiosteoporotic activity in ovariectomy-induced osteoporosis. Part of the protective effect of FRAC might be attributed to its antioxidant potential as bone loss in osteoporosis could be due to the generation of reactive oxygen species/oxidative stress along with other factors. Also, the presence of phytoestrogenic compounds such as daidzein and genistein in the FRAC and their binding to estrogen receptors may add to the protective effect of the FRAC. The FRAC also exhibited significant anticancer activity in breast and ovarian cancer cells. The findings indicate that FRAC has great potential as therapeutics for controlling menopausal osteoporosis with the additional benefit of anticancer effect. However, further mechanistic studies including the redox status in bone, HDL & LDL levels in serum, and safety studies are needed for potential use of the FRAC of Pueraria tuberosa in the therapy of osteoporosis.

Supporting information

S1 Table. Chemical compounds in FRAC from Pueraria tuberosa by GC/MS analysis.

(DOC)

Acknowledgments

The support of Dr. Pankaj Samuel, GC/MS Laboratory, Panjab University, Chandigarh, India, is highly appreciated for performing GC/MS analysis. We would like to express our sincere gratitude to Dr. Manik Ghosh, Department of Pharmaceutical Sciences and Technology, Birla Institute of Technology, Ranchi, India, for conducting docking studies.

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

The authors deeply acknowledge University Grants Commission, New Delhi, India, for financial support as Raman Fellowship [F.NO.5-63/2016(IC)] to AP.

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Decision Letter 0

Branislav T Šiler

14 Oct 2020

PONE-D-20-26098

Antioxidant enriched fraction from Pueraria tuberosa alleviates ovariectomized-induced osteoporosis in rats, and inhibits growth of breast and ovarian cancer cell lines in vitro

PLOS ONE

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We look forward to receiving your revised manuscript.

Kind regards,

Branislav T. Šiler, Ph.D.

Academic Editor

PLOS ONE

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[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

Reviewer #2: No

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript is a good research area. However, there are few grammatical errors that must be check in the manuscript. All comments raised have been uploaded for authors. The basis for the dosages used in the methodology must be provided by authors.

Reviewer #2: The present submission claimed that AEF may alleviate bone loss through its anti-oxidant activity. However, I have a few concerns about the submission.

(1) Docking study demonstrated AEF may bind to ERa and ERb. Therefore, ER expression should be examined in the bone.

(2) The uterus weight relative to body weight should be determined.

(3) The authors claimed that AEF may inhibit hyperlipidemia. However, the histological staings in the provided figure appeared that there is less fat disposition in the femur. In addition, oil red O staings should be evaluated in the bone. Moreover, what is the alterations of serum HDL and LDL?

(4) The redox status should be tested in the bone.

(5) If possible, the BMD and bone microstructure should be evaluated.

(6) The P value should be followed when the authors mentioned the result is significant.

(7) Please provide the batch number for the kits and chemicals.

(8) Grammatical mistakes have been found in the MS.

(9) Please eliminate the description of the anticancer. The current data did not support the assertion.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

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Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: PONE-D-20-26098_reviewer comments.pdf

PLoS One. 2021 Jan 14;16(1):e0240068. doi: 10.1371/journal.pone.0240068.r002

Author response to Decision Letter 0


9 Dec 2020

Below we present our point by point responses to the reviewer/editorial comments:

Reviewer/Editorial Comments Response

"Main title: "Antioxidant enriched fraction" has no meaning. Instead "Antioxidant" it can stand "Antioxidant compounds". Moreover,

"enriched" sounds like the authors somehow added antioxidant compounds to the fraction they have investigated. Instead of "enriched",

"rich"(if they are clearly reach) or "containing" should read (throughout the text). And finally, the authors did not investigate a fraction of P. tuberosa, but a fraction of its extract." We have corrected "Antioxidant enriched fraction" to "Antioxidant-rich fraction" throughout the manuscript.

The title is changed as: Antioxidant-rich fraction from Pueraria tuberosa alleviates ovariectomized-induced osteoporosis in rats, and inhibits growth of breast and ovarian cancer cells

1) Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at Corrected as per the PLOS ONE style templates.

2) PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. ORCID iD information is added.

3) Please include a copy of Table 3 which you refer to in your text on page 24. Table 3 was mentioned in the MS by mistake and now it has been corrected as the supplementary material S1.

4) Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Captions are included and updated the in-text citations

5) We noticed there is a bit of text overlap with this previously published paper of yours: https://doi.org/10.1016/j.sajb.2018.05.033, which will need to be addressed. In your revision ensure you cite all your sources (including your own work), and quote or rephrase any duplicated text outside the methods section. Further consideration is dependent on these concerns being addressed. We have extensively edited, rephrased the revised manuscript for any text overlap with the previous paper.

Reviewer's Responses to Questions

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes

Reviewer #2: Partly

Changes and corrections have been made in the manuscript to address the comment for Reviewer #2

2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes

Reviewer #2: Yes

3. Have the authors made all data underlying the findings in their manuscript fully available? Reviewer #1: Yes

Reviewer #2: Yes

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No

Reviewer #2: No

The manuscript is extensively edited to improve the language. The typographical or grammatical errors have also been corrected.

5. Review Comments to the Author

Reviewer #1: The manuscript is a good research area. However, there are few grammatical errors that must be check in the manuscript. All comments raised have been uploaded for authors. The basis for the dosages used in the methodology must be provided by authors. We thank the reviewer for making inspiring comments. We have gone through the manuscript very carefully and corrected grammatical, and spelling mistakes as per the suggestions. The basis for the dose use is provided below.

1) Why and what is the basis for this dose selection? No mortality or any signs of moribund status were found at this dose (2000 mg/kg). Therefore, the LD50 cut-off is 5000 mg/kg (category 5 in the Globally Harmonized Classification System). Usually, 1/5th and 1/10th of the LD50 value can be used for animal experimentation and the dose selected (very small dose compared to LD50 cut-off, 5000 mg/kg) for screening antiosteoporotic activity, where the treatment was for 90 days. We have not observed and mortality of signs of toxicity during this 90 days period also. This information is now provided in the manuscript (page #, lines #-#)

2) In the molecular docking methodology, it was necessary to detail more, for example, which values of the grid box (x, y and z). 1x7R: 15.587, 32.224, 22.304

1x76: 29.554, 37.747, 38.951

This information is now provided in the manuscript (page 14, lines 284-285)

No proper methodology in ligand preparation. Provide detailed methodology. 3D conformer (.sdf) of daidzein and genistein were downloaded from PubChem website and used as ligand. FlexXLeadIT 2.1.8 of BiosolveIT uses only 3D conformer of ligands. This information is now provided in the manuscript (page 14, lines 292-293)

Genistein: https://pubchem.ncbi.nlm.nih.gov/compound/5280961

Daidzein:

https://pubchem.ncbi.nlm.nih.gov/compound/5281708

The information is added in the method section (page#, lines #-#)

Why was a reference drug not used to compare with the two compounds used for docking studies? 5-hydroxy-2-(4-hydroxyphenyl)-1-benzofuran-7-carbonitrile was used as internal ligand in 1X76 (ER-α). Genistein was the internal ligand of 1X7R (ER-β), Figure 10 mentioned in page 22-23. Further, As per earlier literature, estradiol (a reference drug) has docking score of -18 and -17 into estrogen receptor α and β active site, respectively, which is mentioned in the discussion section (Page 27, line 548-549).

Also, authors should provide the ADMET profile for these compounds as well as the Drug likeness prediction The ADMET profile of the two compounds are now provided in the manuscript (materials section page 14-15, and results section page 23-24)

Reviewer #2: The present submission claimed that AEF may alleviate bone loss through its anti-oxidant activity. However, I have a few concerns about the submission.

(1) Docking study demonstrated AEF may bind to ERa and ERb. Therefore, ER expression should be examined in the bone. The docking study was done to support the data obtained in animal study and we found good interaction of daidzein and genistein with both ER-α and ER-β. However, ER expression could be carried out in future. We have mentioned it in the revised manuscript (page 22, line 449).

(2) The uterus weight relative to body weight should be determined. The weight ratios are: Gr-I (0.1896%); Gr-II (0.0457%); Gr-III (0.1124%); Gr-IV (0.0734%); Gr-V (0.0918%). We have now included this numbers in the revised manuscript (page 20, line 405-407)

(3) The authors claimed that AEF may inhibit hyperlipidemia. However, the histological staings in the provided figure appeared that there is less fat disposition in the femur. In addition, oil red O staings should be evaluated in the bone. Moreover, what is the alterations of serum HDL and LDL? We thank the reviewer for pointing this out. We made the statement based on the ability of AEF to reduce the OVX-induced increased level of triglycerides and total cholesterol. We have not measured the serum HDL and LDL levels at the time of animal experiment.

(4) The redox status should be tested in the bone. Thanks for the suggestion. As we have not measured the balance between oxidants and antioxidants during the experiment.

(5) If possible, the BMD and bone microstructure should be evaluated. We thank the reviewer for the great suggestion. But we could not evaluate the BMD and bone microstructure due to lack of facility at the time of the animal experiment.

(6) The P value should be followed when the authors mentioned the result is significant. We thank the reviewer for the excellent suggestion. We have now provided the information in the manuscript (results section in pages 17-20).

(7) Please provide the batch number for the kits and chemicals. Thanks to the reviewer for the suggestion. We have now provided the information here, but not mentioned in the MS. Currently, we do not have the batch number of some of the reagents/chemicals as they were over and not provided here.

3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide (MTT): lot #11206BE

Dimethyl sulfoxide (DMSO): Lot # S0154

Phosphate Buffered Saline (PBS): Lot # 11419005

Xylazine: FFK8002

Ketamine: 382053

Gentamicin: AHF0051

Calcium kit: CAO-020

Phosphorus kit: PHO-L-B1002

Urea kit: URE-L-B1010

Alkaline phosphatase kit: ALP-L-B1086

Cholesterol kit: HDL-L-B1046

Triglyceride kit: TGR-L-B1106

(8) Grammatical mistakes have been found in the MS. We have searched and corrected the grammatical mistakes Throughout the manuscript

(9) Please eliminate the description of the anticancer. The current data did not support the assertion. The Antioxidant-Rich Fraction (ARF) has the potential for treatment of menopausal osteoporosis. In addition, it has anticancer effect in cancer cells. This is advantageous as treatment with estrogens have the side effect including possibility of developing cancer.To make this clear,we have mentioned this in the Introduction section (page 4, paragraph 2), discussion (page 27, lines 554-559), conclusion (page 30, lines 567-568), and abstract (page 2, lines 44)

Dr. Swaha Satpathy

Attachment

Submitted filename: Responses to reviewers.doc

Decision Letter 1

Branislav T Šiler

11 Dec 2020

PONE-D-20-26098R1

Antioxidant-rich fraction from Pueraria tuberosa alleviates ovariectomized-induced osteoporosis in rats, and inhibits growth of breast and ovarian cancer cells

PLOS ONE

Dear Dr. Satpathy,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

The authors did not properly respond to the comments provided by the Reviewer #2. Two major issues are stated in the reviewers' reports below.

In addition, please take notice of the following comments:

The authors did not grasp the Editor's comments related to the proper usage of scientific terminology introduced in the previous review round. Let me try to explain in a semantic manner:

"Antioxidant" is an adjective and cannot present an object. Therefore, a subject cannot be rich in an attribute, but in some item (noun). The expression "Antioxidant compounds" sound like a logical choice as suggested in the previous review round.

The phrase "fraction from Pueraria tuberosa" is unaccomplished, vague. Can authors define how would they describe a fraction of a plant? Instead of that, a fraction of a plant extract would be more appropriate.

Considering above mentioned, I would suggest transforming the main title into: "A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells". The same terminology has to be applied throughout the text.

L23: No need to introduce the abbreviation of the genus name, i.e. please delete the bracket. Instead of that, the species authority should be introduced as: Pueraria tuberosa (Roxb. ex Willd.) DC. here and also in the L90. In L89: all the Latin names must stand in italics as well as elsewhere in the text.

Compound names are randomly capitalized. Please do not write compound names with capital letters unless they present trademarks.

ARF (antioxidant-rich fraction) cannot stand from the reasons stated as above. "Fraction rich in antioxidant compounds" and a matching abbreviation can read.

Figures 8 and 9 are vertically stretched out. Can you revert them to the original ratio?

==============================

Please submit your revised manuscript by Jan 25 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Branislav T. Šiler, Ph.D.

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: All comments have been addressed. Research ethics was followed as ethical approval was obtained for this study.

Reviewer #2: The authors partly responsed my comments. However,

(1) The redox status should be tested in the bone.

(2) The author should explain why did not test HDL and LDL.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Jan 14;16(1):e0240068. doi: 10.1371/journal.pone.0240068.r004

Author response to Decision Letter 1


22 Dec 2020

1. "Antioxidant" is an adjective and cannot present an object. Therefore, a subject cannot be rich in an attribute, but in some item (noun). The expression "Antioxidant compounds" sound like a logical choice as suggested in the previous review round.

The phrase "fraction from Pueraria tuberosa" is unaccomplished, vague. Can authors define how would they describe a fraction of a plant? Instead of that, a fraction of a plant extract would be more appropriate.

Considering above mentioned, I would suggest transforming the main title into: "A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells". The same terminology has to be applied throughout the text.

Response: The title is changed as: A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells

2. L23: No need to introduce the abbreviation of the genus name, i.e. please delete the bracket. Instead of that, the species authority should be introduced as: Pueraria tuberosa (Roxb. ex Willd.) DC. here and also in the L90. In L89: all the Latin names must stand in italics as well as elsewhere in the text.

Response: Corrections have been made throughout the manuscript (Page: 2, 3, 5, 14, 16-22, 25, 27 & 28).

3. Compound names are randomly capitalized. Please do not write compound names with capital letters unless they present trademarks.

Response: Changes have been made in the manuscript (page: 5 and supplementary material).

4. ARF (antioxidant-rich fraction) cannot stand from the reasons stated as above. "Fraction rich in antioxidant compounds" and a matching abbreviation can read.

Response: ARF (antioxidant-rich fraction) has been stated as "Fraction rich in antioxidant compounds" FRAC throughout the manuscript (Page: 2, 3, 5-7, 9-11, 13, 14, 16-22, 25-28).

5. Figures 8 and 9 are vertically stretched out. Can you revert them to the original ratio?

Response: The figures are now in the original ratio

Reviewer's Responses to Questions

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Response:

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

Reviewer#2 suggested to report some parameters related to animal experiment. We thank the reviewer and appreciate for the suggestions. We will definitely consider them in our future studies. At this time, it is difficult to conduct the whole animal experiments for only these parameters (redox status in bone and HDL & LDL). We have acknowledged and mentioned them for future studies in the conclusion section.

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Review Comments to the Author

Reviewer #1: All comments have been addressed. Research ethics was followed as ethical approval was obtained for this study.

We thank the reviewer for encouraging comments.

Reviewer #2: The authors partly responsed my comments. However,

(1) The redox status should be tested in the bone.

(2) The author should explain why did not test HDL and LDL.

Response: We thank the reviewer and appreciate for the suggestions. We will definitely consider them in our future studies. At this time, it is difficult to conduct the whole animal experiments for only these parameters (redox status in bone and HDL & LDL). We have acknowledged and mentioned them for future studies in the conclusion section.

Attachment

Submitted filename: Responses to Reviewers.doc

Decision Letter 2

Branislav T Šiler

26 Dec 2020

A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells

PONE-D-20-26098R2

Dear Dr. Satpathy,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Branislav T. Šiler, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Branislav T Šiler

4 Jan 2021

PONE-D-20-26098R2

A fraction of Pueraria tuberosa extract, rich in antioxidant compounds, alleviates ovariectomized-induced osteoporosis in rats and inhibits growth of breast and ovarian cancer cells

Dear Dr. Satpathy:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Branislav T. Šiler

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Chemical compounds in FRAC from Pueraria tuberosa by GC/MS analysis.

    (DOC)

    Attachment

    Submitted filename: PONE-D-20-26098_reviewer comments.pdf

    Attachment

    Submitted filename: Responses to reviewers.doc

    Attachment

    Submitted filename: Responses to Reviewers.doc

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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