Abstract
In eukaryotic cells, Rab GTPases and the retromer complex are important regulators of intracellular protein transport. However, the mechanistic relationship between Rab GTPases and the retromer complex in relation to filamentous fungal development and pathogenesis is unknown. In this study, we used Magnaporthe oryzae, an important pathogen of rice and other cereals, as a model filamentous fungus to dissect this knowledge gap. Our data demonstrate that the core retromer subunit MoVps35 interacts with the Rab GTPase MoYpt7 and they colocalize to the endosome. Without MoYpt7, MoVps35 is mislocalized in the cytoplasm, indicating that MoYpt7 plays an important role in the recruitment of MoVps35. We further demonstrate that the expression of an inactive MoYpt7‐DN (GDP‐bound form) mutant in M. oryzae mimicks the phenotype defects of retromer cargo‐sorting complex (CSC) null mutants and blocks the proper localization of MoVps35. In addition, our data establish that MoVps17, a member of the sorting nexin family, is situated at the endosome independent of retromer CSC but regulates the sorting function of MoVps35 after its recruitment to the endosomal membrane by MoYpt7. Taken together, these results provide insight into the precise mechanism of retromer CSC recruitment to the endosome by MoYpt7 and subsequent sorting by MoVps17 for efficient conidiation and pathogenicity of M. oryzae.
Keywords: Magnaporthe oryzae, pathogenicity, recruitment, retromer, sorting
The retromer CSC subcomplex is recruited by MoYpt7 and sequentially sorted by MoVps17‐MoVps5 subcomplex for autophagy and endosome dynamics, which mediate the effective conidiation and pathogenicity of Magnaporthe oryzae.
1. INTRODUCTION
Vesicle transport exists in all eukaryotic cells to mediate material and signal communication, and it involves defined and dynamic space–time coupled processes regulated by many different proteins (Faini et al., 2013; Jahn & Scheller, 2006; Seaman, 2008). Rab GTPases are among the essential components and regulators of vesicle transport that mediate various steps of membrane trafficking (Hutagalung & Novick, 2011; Li & Marlin, 2015; Pfeffer, 2013; Wandinger‐Ness & Zerial, 2014). They are evolutionarily conserved in many organisms ranging from yeast to humans, and function as molecular switches by alternating between inactive (guanosine diphosphate [GDP]‐bound) and active (guanosine triphosphate [GTP]‐bound) states to promote vesicle formation, scission, movement, and fusion at the target membrane (Hutagalung & Novick, 2011; Li & Marlin, 2015; Pfeffer, 2013; Wandinger‐Ness & Zerial, 2014). In particular, Rab7 is a conserved protein that plays an important role in the late endocytic pathway and in lysosome biogenesis in mammalian cells (Chavrier et al., 1990; Modica et al., 2017). In budding yeast (Saccharomyces cerevisiae) or fission yeast (Schizosaccharomyces pombe), the homolog of Rab7, Ypt7, is localized primarily to the vacuolar membrane and mediates docking and fusion of late endosomes with vacuoles; it is also necessary for vacuole–vacuole fusion (Balderhaar et al., 2010; Kashiwazaki et al., 2009). In Arabidopsis, RABG3f, a plant Rab7 homolog, localizes to prevacuolar compartments and the tonoplast, and it is involved in vacuolar trafficking, vacuole biogenesis, and plant growth (Cui et al., 2014; Ebine et al., 2014). Although the localization and functions of Rab7 have been investigated in various organisms, the molecular details of Ypt7‐mediated protein trafficking pathways in the endosomal system are still not well understood.
Retromer is a multisubunit protein transport complex that mediates transportation of various transmembrane proteins/receptors, including immune protein receptors, mannose‐6‐phosphate receptors, Shiga toxin, and Wnt receptors from early endosomes to the trans‐Golgi network (TGN) (Bonifacino & Rojas, 2006; Brown et al., 2001; Eaton, 2008; Seaman, 2005; Verges, 2007). Dysfunction of retromer abrogates various physiological processes such as secretion, storage, transport, and immune responses (Abubakar et al., 2017). Retromer is composed of two subcomplexes: a sorting nexin (SNX) dimer and a cargo‐sorting complex (CSC). The CSC consists of three vacuolar protein‐sorting (Vps) proteins, namely Vps35, Vps26, and Vps29. The C‐terminus of Vps35 binds to the phosphodiesterase‐folded region of Vps29 and its N‐terminus binds to the C‐terminal domain of Vps26, making it the central protein of the retromer complex. The SNX dimer consists of Vps5 and Vps17 proteins, which both contain PX (phox homology) and BAR (Bin‐Amphyphysin‐Rvs) domains. The PX domain binds to phosphatidylinositol on the endosomal membrane surface for effective anchorage of the retromer, whereas the BAR domain induces membrane curvature for vesicle formation (Seaman, 2005).
Studies in mammals and S. cerevisiae have shown that Rab7/Ypt7 coordinates retromer‐mediated cargo transport during vesicle–vacuole fusion (Balderhaar et al., 2010; Rojas et al., 2008). In mammals, GTP‐binding Rab7 protein recruits the retromer CSC to the endosomal membrane (Rojas et al., 2008). Silencing the RAB7 gene prevents the association of the retromer CSC with the endosomal membrane, which in turn results in mis‐sorting of acid hydrolase D and inhibition of retromer‐mediated retrograde transport of cation‐independent mannose‐6‐phosphate receptor (CI‐MPR) (Rojas et al., 2008). Further study revealed that the retromer complex and Rab7 colocalize on endosomes and that GTP‐Rab7 protein interacts directly with the retromer CSC (Rojas et al., 2008). In addition, Seaman et al. showed that TBC1D5 acts as a GTPase activating protein of Rab7, which interacts with the retromer complex and negatively regulates the recruitment of retromer CSC to the endosomal membrane (Seaman et al., 2009). In yeast, the retromer CSC acts as a downstream effector of Ypt7 and overexpression of YPT7 causes the degradation of CSC in the vacuoles, indicating that Ypt7 is essential for proper localization of the CSC (Balderhaar et al., 2010).
Magnaporthe oryzae is a heterozygous filamentous fungus that causes the devastating rice blast disease, which hampers rice production worldwide and threatens world food security. The organism has emerged as an important model organism for studying the development and mechanism of pathogenesis in filamentous fungi (Ebbole, 2007; Valent & Chumley, 1991). M. oryzae infection begins when the fungal spores land on the host surface and begin to germinate and differentiate to produce appressoria, which are required for physical penetration of the host cuticles (Mentlak et al., 2012; Veneault‐Fourrey et al., 2006; Wilson & Talbot, 2009). In our previous studies, we demonstrated that ΔMoypt7 and ΔMovps35 deletion mutants exhibit similar phenotypes, including defective conidiogenesis and pathogenicity (Liu et al., 2015; Zheng et al., 2015b). MoYpt7 is localized on the late endosome/vacuolar membrane and is important for the fungal growth, conidiation, vacuolization, autophagy, stress responses, and pathogenicity (Liu et al., 2015). The ΔMovps35 mutant has delayed lipid and glycogen degradation, and is significantly reduced in conidiation and virulence on rice and barley. Further study showed that appressorial turgor pressure in the ΔMovps35 mutant is significantly lower than that of the wild type, and autophagy is blocked during conidial germination (Zheng et al., 2015b). Both MoYpt7 and MoVps35 are important for autophagy and may work in the same trafficking pathway to regulate vegetative growth, conidiation, and pathogenesis of M. oryzae.
However, our understanding of the relationship between Rab GTPases and the retromer complex in filamentous fungi is completely unknown. In this study, we dissect the molecular interactions and functional mechanisms of these two intracellular trafficking machineries in M. oryzae. Using affinity purification/mass spectrometry assay, coimmunoprecipitation (Co‐IP), and colocalization studies, we show that MoYpt7 interacts with MoVps35, the core subunit of the retromer complex. Loss of MoYpt7 results in mislocalization of MoVps35 to the cytoplasm, which reduces M. oryzae conidiation and pathogenesis. Furthermore, MoVps35 is recruited to the late endosomes by MoYpt7 in a nucleotide‐dependent manner. Finally, we show that the retromer‐sorting nexin protein MoVps17 replaces MoYpt7 for sequential sorting of retromer CSC in pathogenicity of the rice blast fungus. Our data address the key question of how a plant pathogen balances vesicular recruitment and subsequent sorting events to govern its development and pathogenesis.
2. RESULTS
2.1. Punctate MoVps35 associates with MoYpt7 on late endosomal and vacuolar membranes
MoYpt7 is mainly localized on late endosomal and vacuolar membranes, while MoVps35, a core subunit of the retromer complex, appears as fast‐moving punctate structures close to FM4‐64‐marked vacuolar membranes in M. oryzae (Liu et al., 2015; Zheng et al., 2015b). We therefore investigated the possible colocalization of the two proteins. mCherry‐MoYpt7 and MoVps35‐GFP were coexpressed in the Guy11 strain via transformation of the respective plasmid constructs, and their intracellular localization was examined by laser scanning confocal microscopy. We found that MoYpt7 appeared on ring‐shaped vacuoles and dotted structures in both mycelial and conidial cells, while MoVps35 exhibited its usual punctate appearance inside the cells (Figure 1a,b). Strikingly, the majority of MoVps35 punctate structures were aligned at the surface of the MoYpt7 vacuoles and dotted endosomes, and this was further verified by line scan assays (Figure 1a,b). These data clearly demonstrate that MoVps35 closely associates with MoYpt7 on the late endosomal and vacuolar membranes.
2.2. MoVps35 interacts with MoYpt7 in M. oryzae
The partial colocalization of MoVps35 and MoYpt7 prompted us to check whether there is direct interaction between the two proteins. We first expressed MoVps35‐GFP in the ΔMovps35 strain and then used GFP‐Trap beads to extract MoVps35‐GFP and its associated proteins in pull‐down assays. Considering the fact that MoYpt7 and retromer complex have both been found to be involved in autophagy, which is essential for M. oryzae conidiogenesis and pathogenicity (Liu et al., 2015; Zheng et al., 2015b), we analysed the MoVps35 interactomes obtained from nutrient‐sufficient and nitrogen‐deficient conditions for uninduced and induced autophagy, respectively. Two negative control strains, Guy11 (wild type) and Guy11‐GFP (wild type expressing green fluorescent protein, GFP), were introduced for parallel analysis. Proteins bound to the GFP‐Trap beads were eluted and fractionated by 10% sodium dodecyl sulphate (SDS) polyacrylamide gel electrophoresis (PAGE) and stained with Coomassie brilliant blue R‐250. As shown in Figure 1c, many protein bands were observed in the MoVps35‐GFP strains as opposed to only a few in the two negative controls (Guy11 and Guy11‐GFP). Digestion with trypsin and subsequent liquid chromatography‐tandem mass spectrometry (LC‐MS/MS) analyses revealed that the retromer CSC subcomplex, MoVps35‐MoVps26‐MoVps29, was repeatedly captured as one of the interacting proteins in all the replicates of MoVps35‐GFP pull‐down (Table 1), and this was considered as high‐confidence positive control. Remarkably, MoYpt7 was also captured repeatedly in the MoVps35‐GFP pull‐down assays, suggesting a high possibility of interaction between MoYpt7 and MoVps35 (Table 1).
TABLE 1.
Gene | Description | Replication 1 (nutrient culture) | Replication 2 (nutrient culture) | Replication 3 (nitrogen starvation) | |||
---|---|---|---|---|---|---|---|
Coverage (%) | Unique peptides | Coverage (%) | Unique peptides | Coverage (%) | Unique peptides | ||
MGG_05089 (MoVps35) | Vacuolar protein sorting‐associated protein 35 | 26.50 | 26 | 65.37 | 56 | 52.78 | 32 |
MGG_04830 (MoVps26) | Vacuolar protein sorting‐associated protein 26 | 20.82 | 8 | 66.56 | 23 | 50.47 | 14 |
MGG_02524 (MoVps29) | Vacuolar protein sorting‐associated protein 29 | 32.67 | 7 | 54.60 | 10 | 41.58 | 6 |
MGG_08144 (MoYpt7) | Ras‐like protein Rab7 | 23.41 | 4 | 43.41 | 7 | 15.61 | 2 |
Next, we tested for in vivo interaction between MoYpt7 and MoVps35 by Co‐IP. To this end, we generated a Guy11 transformant coexpressing GFP‐MoYpt7 and MoVps35‐FLAG and subjected it to immunoprecipitation (using GFP‐Trap_A beads) and subsequent immunoblot analysis (using an anti‐FLAG antibody). A 51 kDa band corresponding to GFP‐MoYpt7 and a 102 kDa band corresponding to MoVps35‐FLAG were identified, suggesting an in vivo interaction between the retromer subunit, MoVps35, and MoYpt7 (Figure 1d).
2.3. MoYpt7 recruits MoVps35 to the vacuolar membrane in M. oryzae
To understand the function of MoVps35–MoYpt7 interaction, we first expressed MoVps35‐GFP in the ΔMoypt7 mutant and determined the localization of MoVps35‐GFP. The results indicated that, in the absence of MoYpt7, MoVps35‐GFP lost its usual punctate appearance and became dispersed throughout the cytoplasm in both mycelia and conidia (Figure 2a). In contrast, when GFP‐MoYpt7 was expressed in the ΔMovps35 mutant, the localization of GFP‐MoYpt7 remained unchanged in both mycelial and conidial cells (Figure 2b). These results suggest that MoYpt7 plays a regulatory role in the recruitment of cytoplasmic MoVps35 to the vacuolar membrane.
2.4. Ectopic expression of dominant negative MoYpt7 alleles results in mislocalization of MoVps35 and subsequent defects in the fungal conidiation and pathogenicity
Rab/Ypt family proteins change their conformations after binding a guanine nucleotide (Wandinger‐Ness & Zerial, 2014). The conformational change is regulated by a GDP/GTP exchange reaction as well as the GTPase activity (Wandinger‐Ness & Zerial, 2014). In M. oryzae, N125I and Q67L mutations of MoYpt7 protein favour GDP‐bound and GTP‐bound forms, respectively; these two states are important for fungal development and pathogenicity (Huang et al., 2018; Liu et al., 2015). To further investigate the regulatory role of MoYpt7 in MoVps35 localization and function, we constructed a dominant negative (DN) form of MoYpt7 (N125I mutation) and a constitutively active (CA) form of MoYpt7 (Q67L mutation). The MoYpt7‐ DN and MoYpt7‐ CA alleles were cotransformed with the MoVps35‐GFP construct into the wild‐type strain. Subsequent quantitative reverse transcription PCR (RT‐qPCR) analysis indicated that there was a more than 7‐fold increase in MoYpt7 mRNA levels in the vegetative hyphae of MoYpt7‐ DN and MoYpt7‐ CA mutants as compared to the wild‐type strain in each case (Figure 3a), suggesting that the transformants expressed the expected dominant alleles of MoYpt7.
Next, we investigated the effects of MoYpt7‐ CA and MoYpt7‐ DN expression on the localization of MoVps35‐GFP in the mycelia and conidia of M. oryzae. In the MoYpt7‐ CA strain, MoVps35‐GFP showed punctate distribution in the mycelia and conidia (Figure 3b), similar to its localization in the wild type. However, in the MoYpt7‐ DN strain, MoVps35‐GFP was mislocalized and showed a dispersed fluorescence signal in the cytoplasm (Figure 3b), suggesting that MoYpt7 activity is necessary for normal localization of MoVps35. Considering the fact that Rab proteins cycle between their GDP‐bound inactive and GTP‐bound active forms between the cytoplasm and membranes (Hutagalung & Novick, 2011), we reasoned that the dispersed nature of MoVps35‐GFP into the cytoplasm in the strain expressing MoYpt7‐DN could be due to failure of MoYpt7‐DN to adhere to the late endosomal and vacuolar membranes. To test this hypothesis, GFP‐tagged MoYpt7‐ DN and MoYpt7‐ CA constructs were generated and transformed into the protoplasts of the wild‐type strain, and transformants were subjected to RT‐qPCR to check the expression levels of the constructs (Figures S1a and S2a). As expected, the inactive GDP‐bound form of MoYpt7 mostly localized to the cytoplasm while its active GTP‐bound form localized to vacuolar membranes in both mycelia and conidia (Figures S1b and S2b). Therefore these results indicate that MoVps35 is recruited to the late endosomes by MoYpt7 in a nucleotide‐dependent manner.
The mislocalization of MoVps35 in the MoYpt7‐DN mutant prompted us to investigate and compare the phenotypic features of the MoYpt7‐DN mutant with those of the ΔMovps35 mutant. To this end, we examined the growth, conidiation, and pathogenicity of the MoYpt7‐DN mutant on barley and rice leaves. Like the ΔMovps35 mutant (Zheng et al., 2015b), the MoYpt7‐ DN mutant grew slightly slower than the wild type on various culture media, with significantly reduced conidiation and pathogenicity on plant leaves (Figure S1c–i). As compared to the wild type, the MoYpt7‐ CA mutant did not show obvious reduction in growth, conidiation, and pathogenicity (Figure S2c–i). These data demonstrate that the MoYpt7‐DN mutant is impaired in MoVps35 recruitment and consequently mimicked the ΔMovps35 mutant phenotype defects, including decreased conidiation and pathogenicity to the host. We further tested whether MoVps35 could act as an MoYpt7 effector for conidiogenesis and pathogenicity. If this were true, MoVps35 should physically interact with the active (GTP‐bound) MoYpt7 only and should act downstream of MoYpt7. We therefore used a Co‐IP assay to test whether the CA and the DN forms of MoYpt7 interact with MoVps35. The results clearly indicated positive interaction of MoVps35 with both the CA and the DN forms of MoYpt7 (Figure 3c), suggesting that MoVps35 is not an effector of MoYpt7.
2.5. Overexpression of MoVps35 in ΔMoypt7 fails to restore the phenotypic defects of the ΔMoypt7 mutant
To determine whether an increase in the expression level of MoVps35 could rescue the phenotypic defects of the ΔMoypt7 mutant, we overexpressed MoVps35 in the ΔMoypt7 mutant and found that the expression levels of MoVps35 in two transformants, ΔMoypt7 + MoVps35OE‐13 and ΔMoypt7 + MoVps35OE‐18, were 3.93‐ and 4.31‐fold up‐regulated compared to the expression level of MoVps35 in Guy11, respectively (Figure 4a). The overexpressed MoVps35‐GFP was mainly dispersed in the cytoplasm in the mycelia and conidia of the ΔMoypt7 mutant (Figure 4b). This is consistent with the expression of MoVps35‐GFP under the native MoVps35 promoter in the ΔMoypt7 mutant (Figure 2a). Furthermore, we compared the vegetative growth rates of Guy11, ΔMoypt7, ΔMoypt7 + MoVps35OE‐13, and ΔMoypt7 + MoVps35OE‐18 on complete medium (CM), starch yeast medium (SYM), and rice bran medium (RBM) in hyphal growth assays. The vegetative growth rates of ΔMoypt7 + MoVps35OE‐13 and ΔMoypt7 + MoVps35OE‐18 were not significantly different from that of ΔMoypt7 on CM, SYM, and RBM (Figure 4c,d). The conidiation defects of the overexpressed strains remained the same as the ΔMoypt7 mutant (Figure 4e). In pathogenicity tests, all the MoVps5‐overexpressing strains exhibited a similar degree of pathogenicity to the ΔMoypt7 mutant (Figure 4f–i). Thus, our results showed that the overexpression of MoVps35 in ΔMoypt7 did not restore the phenotypic defects of ΔMoypt7 to the wild‐type phenotype. We also performed a reciprocal experiment by overexpressing MoYpt7 in the ΔMovps35 mutant. The results were the same (Figure S3), suggesting that the regulatory relationship between MoYpt7 and MoVps35 is not decided by transcriptional control but depends on their accurate spatial positioning in the cells.
2.6. MoVps17 releases MoVps35 after its recruitment to the endosomal membrane by MoYpt7
The precise sorting event of the retromer CSC after recruitment to the endosomal membrane and any potential cross‐regulation among the retromer CSC, SNX, and Ypt7 have not been investigated in depth, even in mammals and yeast. To our knowledge, this process is also completely uninvestigated in filamentous fungi. To investigate this gap, we analysed the role of the sorting nexin (SNX) dimer MoVps17/MoVps5 with respect to MoVps35 and MoYpt7. Our previous study has already established the essentiality of MoVps5 in M. oryzae development (Zheng et al., 2017). As such, we focus here on the role of MoVps17 in relation to these proteins. We first investigated the localization of MoVps35‐GFP in the ΔMovps17 mutant. We found that MoVps35‐GFP was aggregated into plaque‐like structures and there was significant reduction of discrete fluorescent spots compared to the wild type (Figure 5a). This suggests that MoVps17 regulates the sorting and trafficking function of MoVps35 after its recruitment by MoYpt7. To determine whether MoVps35 could regulate the localization MoVps17, we transformed MoVps17‐GFP into the ΔMovps35 mutant and the results showed that the localization of MoVps17‐GFP was not affected in the ΔMovps35 mutant compared to the wild type (Figure 5b). Therefore, our data show that the endosomal membrane localization of the sorting nexin protein MoVps17 does not depend on retromer CSC but plays an important role in separating/fission retromer CSC.
We examined if there is any connection between the MoVps35 recruiting protein MoYpt7 and MoVps17. To this end, we determined the localization of GFP‐MoYpt7 in the ΔMovps17 mutant and vice versa. Our results indicated that MoVps17 was dispensable for normal endosomal/vacuolar membrane localization of MoYpt7 (Figure 6a). However, deletion of MoYpt7 partially disrupted the punctate localization of MoVps17 (Figure 6b). Finally, we investigated the localization of the second SNX component of the retromer complex MoVps5 in ΔMoypt7, ΔMovps35, and ΔMovps17 mutants. The results demonstrated that the localization of MoVps5 was not affected in ΔMoypt7 and ΔMovps35. However, some MoVps5‐GFP aggregates were observed in ΔMovps17 (Figure 6c), suggesting that MoVps17 is involved in the sorting of MoVps5 in M. oryzae. These results suggest that consecutive recruitment and sorting of retromer CSC is carried out by MoYpt7 and MoVps17, respectively, which is crucial to coordinate material/protein delivery for efficient conidiation and pathogenicity in pathogenic fungi.
2.7. ΔMoypt7 and ΔMovps17 mutants show more severe pathogenicity defects than the retromer CSC mutants
To compare the roles of the Rab GTPase MoYpt7 and the components of the retromer CSC (MoVps26, MoVps29, and MoVps35) and the sorting nexin protein MoVps17 in M. oryzae pathogenicity, we cultured their respective deletion mutants and complemented strains on CM. Subsequently, each strain was inoculated on both intact and wounded barley as well as rice leaves for infection assays. Compared to the wild‐type strain (Guy11) and each complemented strain, the pathogenicity of MoYpt7, MoVps17, MoVps35, MoVps26, or MoVps29 gene deletion mutants were either significantly reduced or completely abolished (Figure 7a–d). For more detailed analyses, we further investigated their penetration and host cell colonization abilities in epidermal cells of barley leaves. Our results showed that the ΔMoypt7 and ΔMovps17 mutants were almost completely absent from the host epidermal cells, whereas the deletion mutants of the retromer CSC components showed some levels of colonization that was less than that of the wild type (Figure 7e). Taken together, our results demonstrate that MoYpt7 and all the retromer complex subunits are necessary for pathogenicity of M. oryzae, and that ΔMoypt7 and ΔMovps17 mutants appear less pathogenic than the mutants of the retromer CSC subunits.
3. DISCUSSION
In this study, we investigated the molecular mechanism of the indispensable vesicular transport machinery, the retromer CSC, in the phytopathogenic fungus M. oryzae. To summarize our findings, the model in Figure 8a is proposed, in which MoYpt7 initially recruits the retromer CSC from the cytosol to the endosomal membrane. After this recruitment, MoVps17 subsequently replaces MoYpt7 and assembles with the retromer CSC to mediate protein sorting/trafficking. In M. oryzae, protein sorting is essential for inducing autophagy, which is required for effective conidiation and pathogenicity (Abubakar et al., 2017; Zheng et al., 2015b). In addition, the sorting nexin proteins MoVps17/MoVps5 play distinct roles in the regulation of endosome dynamics during fungal development and plant infection, which was documented in our previous study (Zheng et al., 2017). Notably, deletion of MoVps35 does not influence the subcellular localization of MoYpt7, MoVps5, and MoVps17, but the autophagy‐dependent conidiation and pathogenicity of M. oryzae ceases (Figure 8b) (Abubakar et al., 2017; Zheng et al., 2015b). In the absence of MoYpt7, the retromer CSC and MoVps17 are mislocalized to the cytoplasm, which severely affects autophagy and the endosome dynamics‐dependent conidiation and pathogenicity of M. oryzae (Figure 8c). In the ΔMovps17 mutant, the balance between recruitment and sorting is perturbed, which results in excessive accumulation of CSC and MoVps5 on the endosomal membrane (Figure 8d). In conclusion, our findings provide the precise mechanism of recruitment of the retromer CSC subcomplex as well as of its sorting function, which are essential for development and pathogenicity of M. oryzae.
MoYpt7 and the retromer complex components MoVps17, MoVps35, MoVps26, and MoVps29 have been reported to play vital roles in the regulation of pathogenicity in M. oryzae (Liu et al., 2015; Zheng et al., 2015b, 2017). The present study confirmed that the pathogenicity of ΔMovps35, ΔMovps26, and ΔMovps29 mutants were significantly reduced compared to the wild‐type strain, while ΔMoypt7 and ΔMovps17 mutants almost lost their pathogenicity in the host (Figure 7), indicating that MoYpt7 and MoVps17 play stronger regulatory roles in pathogenicity than the retromer CSC complex in M. oryzae. Our previous study showed that the SNX protein MoVps17 localizes to endosomes and is essential for regulating endosome dynamics such as endosome budding, fusion, and endocytosis, which are independent of the retromer CSC (Zheng et al., 2017), meaning that the tethering of MoVps17 to the endosomal membrane further strengthens the ability of the pathogen to infect the host plant. MoYpt7 acts as a molecular switch for vesicle transport where deletion of the MoYpt7 gene prevents the transition from early to late endosomes or vacuole/lysosomes, which leads to defects in multiple regulatory pathways and autophagy (Liu et al., 2015). This explains why the ΔMoypt7 mutant in this study almost lost the ability to infect the host.
Endosomes are important protein‐sorting centres during endocytosis in eukaryotes (Huotari & Helenius, 2011). The cargoes of the endocytic system could be retained in mature endosomes and delivered to lysosomes for degradation, or could be transported to other organelles (Seaman et al., 1998). The retromer complex prevents unnecessary degradation of cargoes by sorting them from endosomes and channelling them to the Golgi network via the retrograde trafficking pathway (Attar & Cullen, 2010; Rojas et al., 2008; Seaman et al., 1998). In mammals, Rab7 interacts with the retromer CSC complex Vps26‐Vps29‐Vps35. A pull‐down assay indicated that Rab7 colocalizes with retromer complex on the endosomes, and the retromer CSC complex Vps26‐Vps29‐Vps35 is recruited to the endosomal membrane by GTP‐bound Rab7 protein (Priya et al., 2015; Rojas et al., 2008). In Arabidopsis, the Rab7 homolog RABG3f plays a role in recruiting the retromer CSC to the endosomal membrane through interaction with Vps35 (Zelazny et al., 2013). This recruitment requires Ypt7, a protein that coordinates retromer‐mediated retrograde trafficking, membrane recycling, and fusion of late endosomes with the vacuole in S. cerevisiae (Balderhaar et al., 2010; Harrison et al., 2014; Liu et al., 2012; Purushothaman et al., 2017). In this study, our pull‐down and mass spectrometry analyses indicated that MoYpt7 interacts with MoVps35 (Table 1), which has been confirmed by Co‐IP experiments (Figure 1d). mCherry‐MoYpt7 colocalizes with MoVps35‐GFP on late endosomes/vacuolar membrane (Figure 1a,b), which is consistent with previous studies in other species (Balderhaar et al., 2010; Harrison et al., 2014; Liu et al., 2012; Purushothaman et al., 2017; Rojas et al., 2008; Zelazny et al., 2013). These results suggest that the interaction of Ypt7 with Vps35 is conserved among different species.
Rab proteins regulate various pathways by interacting with some effector proteins. In yeast, previous studies on the retromer complexes showed that the retromer CSC interacts with Ypt7‐GTP (Balderhaar et al., 2010; Liu et al., 2012; Purushothaman et al., 2017). Our results showed that both the GTP‐bound (MoYpt7‐CA) and GDP‐bound (MoYpt7‐DN) forms of MoYpt7 interacted with MoVps35 (Figure 3c), which means that this interaction is independent of the activate or inactivate state of MoYpt7. Our finding is consistent with a study from mammalian cells that showed that the dissociation constants for the interactions of Vps35 with GppNHp‐ and GDP‐bound Rab7 were similar, indicating Vps35 does not show any preference for the active form of Rab7 (Priya et al., 2015). Most effector proteins interact with Rab proteins in their activate states, but there are a few effector proteins that interact with inactivate Rab proteins (Shirane & Nakayama, 2006). Therefore, the MoVps35 may not act as a typical effector of MoYpt7 in M. oryzae. This clearly demonstrates a difference in the regulation of retromer function between yeast and filamentous fungi.
We also revealed that the M. oryzae retromer exhibited unexpected features compared to its yeast counterparts. For example, we found that MoVps35‐GFP fluorescence was aggregated into plaque‐like structures and the discrete fluorescent spots were significantly reduced in the ΔMovps17 mutant compared to the wild type (Guy11) (Figure 5). In yeast, although the localization of retromer CSC to endosomes requires the Vps5 and Vps17 sorting nexins, it does not show aggregated structures in the Δvps5vps17 double mutant (Liu et al., 2012). In addition, loss of Ypt7 does not lead to mislocalization of Vps35‐GFP to the cytoplasm in the yeast (Liu et al., 2012). A further study found that yeast Vps35‐GFP and Vps26‐GFP localize to the cytosol in a Δvps5vps17ypt7 triple mutant (Liu et al., 2012). These data indicate that the M. oryzae sorting nexin MoVps17 itself plays a vital role in retromer CSC sorting. We also investigated the connection between MoYpt7 and MoVps17 and found that the punctate localization of MoVps17 was partially affected in a MoYpt7 mutant, and MoVps17 was not required for endosomal/vacuolar membrane localization of MoYpt7 (Figure 6a,b). The punctate localization of MoVps5 was not affected in the MoYpt7 and MoVps35 mutants, but disruption of MoVps17 resulted in MoVps5 accumulation into plaque‐like structures (Figure 6c). These results further confirm that MoVps17 plays a leading role in vesicular sorting, which is clearly different from its role in yeast.
Overexpression of MoYpt7 in ΔMovps35 did not restore the phenotypic defects of ΔMovps35 (Figure S3). Likewise, overexpression of MoVps35 in ΔMoypt7 did not restore the phenotypic defects observed in ΔMoypt7 (Figure 4). These results indicate that the biological function in conidogenesis and pathogenicity depends on correct recognition of the retromer by MoYpt7 at the right time and in the right space. Therefore, our results fill the gap in knowledge between retromer complex recruitment and its sorting function in filamentous fungi, which could lay a foundation for effective prevention and control of rice blast disease.
4. EXPERIMENTAL PROCEDURES
4.1. Fungal strains, media, and growth conditions
Guy11 and Ku70 were used as the wild‐type strains from which the deletion mutants ΔMoypt7, ΔMovps35, and other mutant strains were generated (Table S2). The various strains were cultured at 28 °C with a 12 hr photoperiod. The media used in the assays included CM (Zheng et al., 2015b), SYM (0.3% sucrose, 1% starch, 0.2% yeast extract, 2% agar), and RBM (4% rice bran, pH 6.0–6.5, 2% agar).
4.2. Construction of fusion vectors and point mutations
MoYpt7 was tagged at the N‐terminus with mCherry, with the gene under the control of its native promoter, to generate the native‐mCherry‐MoYpt7 vectors. This insertion was verified by PCR using the specific primer pairs presented in Table S1. The mCherry fragment was amplified from the FgSpa2‐mCherry plasmid (Zheng et al., 2015a) and then cloned into the pCB1532 plasmid digested with SalI and BamHI. The MoYpt7 protein was also tagged with GFP at its N‐terminus, with the gene under the control of native and RP27 promoters. The GFP fragment was isolated from the GFP‐FgRab fusion vector (Zheng et al., 2015a), whereas the RP27 fragment was isolated from the pTE11 vector and cloned into plasmid pKNT following digestion with XhoI and HindIII restriction enzymes. For generation of MoYpt7‐CA and MoYpt7‐DN constructs, we first amplified MoYpt7‐ CA1, ‐CA2, ‐DN1, and ‐DN2 genes from the cDNA of Guy11 using the pairs of primers presented in Table S1. We then introduced the point mutations in MoYpt7‐ CA and MoYpt7‐ DN fragments using splicing‐by‐overlap extension PCR and cloned them (with an RP27 promoter) into pKNT vector and verified the constructs by sequencing. MoVps35 was also tagged with GFP at its C‐terminus, with the gene under the control of its native or RP27 promoter, to form the native‐MoVps35‐GFP or RP27‐MoVps35‐GFP vectors. The constructed vectors were transformed into Guy11, ΔMoypt7, or ΔMovps35 mutant protoplasts.
4.3. Co‐IP assay
We coexpressed MoYpt7 fused with GFP and MoVps35 tagged with FLAG in Guy11 protoplasts. The total proteins were extracted from the transformants and GFP‐Trap beads (ChromoTek Inc.) were used for a pull‐down assay. The interacting proteins were separated by SDS‐PAGE. The GFP‐MoYpt7 and the MoVps35‐FLAG proteins were detected by α‐GFP (MBL) and α‐FLAG (Abmart) antibodies, respectively.
4.4. Quantitative reverse transcription PCR
Total RNA was extracted from the wild type and mutants’ mycelia harvested from liquid CM that was inoculated and incubated at 28 °C with constant shaking at 110 rpm for 3 days, using an Eastep Super Total RNA Extraction Kit (Promega). Reverse transcription was used to generate cDNA using a reverse transcription kit (Takara). Quantitative PCR was finally conducted using a SYBR kit (Takara) with specific primers (Table S1). M. oryzae β‐tubulin (Table S1) was used as the endogenous reference gene, and the expression levels were calculated using the 2−ΔΔ C t method as previously reported (Livak & Schmittgen, 2001). All RT‐qPCR assays were repeated three times for each sample.
4.5. Subcellular localization assay
For cellular localization assay, all the strains were cultured in liquid/solid CM at 28 °C. The mycelia and conidia of the strains involved were observed using a Nikon A1R laser scanning confocal microscope. Unless noted otherwise, all microscope images were taken within the same focal plane section.
4.6. Phenotypic analysis
For growth rate assays, mycelial blocks 3 mm in diameter (the peripheral edge of the colony) were inoculated at the centre of CM, SYM, and RBM plates. We measured the diameters of the colonies after 10 days of incubation at 28 °C. For conidiation assays, the strains were cultured on RBM plates and incubated at 28 °C and the first aerial hyphae were stripped out after they had filled up the plates, and reincubated. After 4 days of the second incubation, the cultures were washed with double‐distilled water and conidia were collected and counted using a haemocytometer. For the pathogenicity assay, fresh mycelial blocks were inoculated on intact and wounded barley (cv. Golden Promise) as well as rice (CO39) leaves. The set‐up was kept humid and incubated in the dark for 24 hr at 28 °C, then transferred to a 12 hr photoperiod at 28 °C. The lesions were observed and compared after 7 days. The lesion area was analysed using ImageJ software.
Supporting information
ACKNOWLEDGEMENTS
We would like to thank Dr Fu‐Cheng Lin and Xiaohong Liu for providing us with the ΔMoypt7 mutant. This work was supported by the National Natural Science Foundation of China (31772106, 31601596), the Fujian Natural Science Foundation (2017J01433), and the FAFU international cooperation project (KXB16010A). All authors declared no financial or other potential conflict of interest.
Wu C, Lin Y, Zheng H, et al. The retromer CSC subcomplex is recruited by MoYpt7 and sequentially sorted by MoVps17 for effective conidiation and pathogenicity of the rice blast fungus. Mol Plant Pathol. 2021;22:284–298. 10.1111/mpp.13029
Contributor Information
Jie Zhou, Email: jiezhou@fafu.edu.cn.
Wenhui Zheng, Email: wenhuiz@fafu.edu.cn.
DATA AVAILABILITY STATEMENT
The data that support the findings of this study are available from the corresponding author upon reasonable request.
REFERENCES
- Abubakar, Y.S. , Zheng, W. , Olsson, S. & Zhou, J. (2017) Updated insight into the physiological and pathological roles of the retromer complex. International Journal of Molecular Sciences, 18, 1601. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Attar, N. & Cullen, P.J. (2010) The retromer complex. Advances in Enzyme Regulation, 50, 216–236. [DOI] [PubMed] [Google Scholar]
- Balderhaar, H.J. , Arlt, H. , Ostrowicz, C. , Brocker, C. , Sundermann, F. , Brandt, R. et al. (2010) The Rab GTPase Ypt7 is linked to retromer‐mediated receptor recycling and fusion at the yeast late endosome. Journal of Cell Science, 123, 4085–4094. [DOI] [PubMed] [Google Scholar]
- Bonifacino, J.S. & Rojas, R. (2006) Retrograde transport from endosomes to the trans‐Golgi network. Nature Reviews, 7, 568–579. [DOI] [PubMed] [Google Scholar]
- Brown, D.W. , McCormick, S.P. , Alexander, N.J. , Proctor, R.H. & Desjardins, A.E. (2001) A genetic and biochemical approach to study trichothecene diversity in Fusarium sporotrichioides and Fusarium graminearum . Fungal Genetics and Biology, 32, 121–133. [DOI] [PubMed] [Google Scholar]
- Chavrier, P. , Parton, R.G. , Hauri, H.P. , Simons, K. & Zerial, M. (1990) Localization of low molecular weight GTP binding proteins to exocytic and endocytic compartments. Cell, 62, 317–329. [DOI] [PubMed] [Google Scholar]
- Cui, Y. , Zhao, Q. , Gao, C. , Ding, Y. , Zeng, Y. , Ueda, T. et al. (2014) Activation of the Rab7 GTPase by the MON1‐CCZ1 complex is essential for PVC‐to‐vacuole trafficking and plant growth in Arabidopsis . The Plant Cell, 26, 2080–2097. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eaton, S. (2008) Retromer retrieves wntless. Developmental Cell, 14, 4–6. [DOI] [PubMed] [Google Scholar]
- Ebbole, D.J. (2007) Magnaporthe as a model for understanding host–pathogen interactions. Annual Review of Phytopathology, 45, 437–456. [DOI] [PubMed] [Google Scholar]
- Ebine, K. , Inoue, T. , Ito, J. , Ito, E. , Uemura, T. , Goh, T. et al. (2014) Plant vacuolar trafficking occurs through distinctly regulated pathways. Current Biology, 24, 1375–1382. [DOI] [PubMed] [Google Scholar]
- Faini, M. , Beck, R. , Wieland, F.T. & Briggs, J.A. (2013) Vesicle coats: structure, function, and general principles of assembly. Trends in Cell Biology, 23, 279–288. [DOI] [PubMed] [Google Scholar]
- Harrison, M.S. , Hung, C.S. , Liu, T.T. , Christiano, R. , Walther, T.C. & Burd, C.G. (2014) A mechanism for retromer endosomal coat complex assembly with cargo. Proceedings of the National Academy of Sciences of the United States of America, 111, 267–272. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huang, L.Y. , Wu, M. , Yu, X.Y. , Li, L. , Lin, F.C. & Liu, X.H. (2018) Physical interactions and mutational analysis of MoYpt7 in Magnaporthe oryzae . Journal of Zhejiang University. Science. B., 19, 79–84. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huotari, J. & Helenius, A. (2011) Endosome maturation. The EMBO Journal, 30, 3481–3500. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hutagalung, A.H. & Novick, P.J. (2011) Role of Rab GTPases in membrane traffic and cell physiology. Physiological Reviews, 91, 119–149. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jahn, R. & Scheller, R.H. (2006) SNAREs—engines for membrane fusion. Nature Reviews, 7, 631–643. [DOI] [PubMed] [Google Scholar]
- Kashiwazaki, J. , Iwaki, T. , Takegawa, K. , Shimoda, C. & Nakamura, T. (2009) Two fission yeast rab7 homologs, ypt7 and ypt71, play antagonistic roles in the regulation of vacuolar morphology. Traffic, 10, 912–924. [DOI] [PubMed] [Google Scholar]
- Li, G. & Marlin, M.C. (2015) Rab family of GTPases. Methods in Molecular Biology, 1298, 1–15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu, T.T. , Gomez, T.S. , Sackey, B.K. , Billadeau, D.D. & Burd, C.G. (2012) Rab GTPase regulation of retromer‐mediated cargo export during endosome maturation. Molecular Biology of the Cell, 23, 2505–2515. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu, X.H. , Chen, S.M. , Gao, H.M. , Ning, G.A. , Shi, H.B. , Wang, Y. et al. (2015) The small GTPase MoYpt7 is required for membrane fusion in autophagy and pathogenicity of Magnaporthe oryzae . Environmental Microbiology, 17, 4495–4510. [DOI] [PubMed] [Google Scholar]
- Livak, K.J. & Schmittgen, T.D. (2001) Analysis of relative gene expression data using real‐time quantitative PCR and the 2(−ΔΔCT) method. Methods, 25, 402–408. [DOI] [PubMed] [Google Scholar]
- Mentlak, T.A. , Kombrink, A. , Shinya, T. , Ryder, L.S. , Otomo, I. , Saitoh, H. et al. (2012) Effector‐mediated suppression of chitin‐triggered immunity by Magnaporthe oryzae is necessary for rice blast disease. The Plant Cell, 24, 322–335. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Modica, G. , Skorobogata, O. , Sauvageau, E. , Vissa, A. , Yip, C.M. , Kim, P.K. et al. (2017) Rab7 palmitoylation is required for efficient endosome‐to‐TGN trafficking. Journal of Cell Science, 130, 2579–2590. [DOI] [PubMed] [Google Scholar]
- Pfeffer, S.R. (2013) Rab GTPase regulation of membrane identity. Current Opinion in Cell Biology, 25, 414–419. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Priya, A. , Kalaidzidis, I.V. , Kalaidzidis, Y. , Lambright, D. & Datta, S. (2015) Molecular insights into Rab7‐mediated endosomal recruitment of core retromer: deciphering the role of Vps26 and Vps35. Traffic, 16, 68–84. [DOI] [PubMed] [Google Scholar]
- Purushothaman, L.K. , Arlt, H. , Kuhlee, A. , Raunser, S. & Ungermann, C. (2017) Retromer‐driven membrane tubulation separates endosomal recycling from Rab7/Ypt7‐dependent fusion. Molecular Biology of the Cell, 28, 783–791. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rojas, R. , van Vlijmen, T. , Mardones, G.A. , Prabhu, Y. , Rojas, A.L. , Mohammed, S. et al. (2008) Regulation of retromer recruitment to endosomes by sequential action of Rab5 and Rab7. The Journal of Cell Biology, 183, 513–526. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seaman, M.N. (2005) Recycle your receptors with retromer. Trends in Cell Biology, 15, 68–75. [DOI] [PubMed] [Google Scholar]
- Seaman, M.N. (2008) Endosome protein sorting: motifs and machinery. Cellular and Molecular Life Sciences, 65, 2842–2858. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seaman, M.N. , Harbour, M.E. , Tattersall, D. , Read, E. & Bright, N. (2009) Membrane recruitment of the cargo‐selective retromer subcomplex is catalysed by the small GTPase Rab7 and inhibited by the Rab‐GAP TBC1D5. Journal of Cell Science, 122, 2371–2382. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Seaman, M.N. , McCaffery, J.M. & Emr, S.D. (1998) A membrane coat complex essential for endosome‐to‐Golgi retrograde transport in yeast. The Journal of Cell Biology, 142, 665–681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shirane, M. & Nakayama, K.I. (2006) Protrudin induces neurite formation by directional membrane trafficking. Science, 314, 818–821. [DOI] [PubMed] [Google Scholar]
- Valent, B. & Chumley, F.G. (1991) Molecular genetic analysis of the rice blast fungus, Magnaporthe grisea . Annual Review of Phytopathology, 29, 443–467. [DOI] [PubMed] [Google Scholar]
- Veneault‐Fourrey, C. , Barooah, M. , Egan, M. , Wakley, G. & Talbot, N.J. (2006) Autophagic fungal cell death is necessary for infection by the rice blast fungus. Science, 312, 580–583. [DOI] [PubMed] [Google Scholar]
- Verges, M. (2007) Retromer and sorting nexins in development. Frontiers in Bioscience, 12, 3825–3851. [DOI] [PubMed] [Google Scholar]
- Wandinger‐Ness, A. & Zerial, M. (2014) Rab proteins and the compartmentalization of the endosomal system. Cold Spring Harbor Perspectives in Biology, 6, a022616. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson, R.A. & Talbot, N.J. (2009) Under pressure: investigating the biology of plant infection by Magnaporthe oryzae . Nature Reviews Microbiology, 7, 185–195. [DOI] [PubMed] [Google Scholar]
- Zelazny, E. , Santambrogio, M. , Pourcher, M. , Chambrier, P. , Berne‐Dedieu, A. , Fobis‐Loisy, I. et al. (2013) Mechanisms governing the endosomal membrane recruitment of the core retromer in Arabidopsis . The Journal of Biological Chemistry, 288, 8815–8825. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zheng, H. , Guo, Z. , Xi, Y. , Yuan, M. , Lin, Y. , Wu, C. et al. (2017) Sorting nexin (MoVps17) is required for fungal development and plant infection by regulating endosome dynamics in the rice blast fungus. Environmental Microbiology, 19, 4301–4317. [DOI] [PubMed] [Google Scholar]
- Zheng, H. , Zheng, W. , Wu, C. , Yang, J. , Xi, Y. , Xie, Q. et al. (2015a) Rab GTPases are essential for membrane trafficking‐dependent growth and pathogenicity in Fusarium graminearum . Environmental Microbiology, 17, 4580–4599. [DOI] [PubMed] [Google Scholar]
- Zheng, W. , Zhou, J. , He, Y. , Xie, Q. , Chen, A. , Zheng, H. et al. (2015b) Retromer is essential for autophagy‐dependent plant infection by the rice blast fungus. PLoS Genetics, 11, e1005704. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The data that support the findings of this study are available from the corresponding author upon reasonable request.