Fig. 3.

Venn diagrams of haplotypes discovered in the vaginal microbiome dataset (MacIntyre et al., 2015) by AmpliCI, AmpliCI-con, DADA2, UNOISE3 and Deblur. Haplotypes with a 100% match to the Silva v132 rRNA gene database (Quast et al., 2012) are shaded. AmpliCI and AmpliCI-con compared to (a) DADA2 with abundance threshold c = 2, (b) UNOISE3 with c = 2 and cross-sample abundance threshold $c^{*}=8$ and (c) Deblur with c = 2 and cross-sample abundance threshold $c^{*}=10$