TABLE 1.
Gene | Locus no.a | Enzyme or function | No. of Tn inserts in original library | Reference(s) |
---|---|---|---|---|
Uptake | ||||
hxuA | PA1302 | Heme outer membrane receptor | 148 | |
hxuR | PA1301 | Anti-sigma factor | 70, 148 | |
hxuI | PA1300 | ECF sigma factor | 70, 148 | |
hasD | PA3406 | Transport protein | 149 | |
hasA | PA3407 | Extracellular heme binding (hemophore) | 149 | |
hasR | PA3408 | Heme outer membrane receptor (sensing) | 1 | 149 |
hasE | PA3405 | Membrane fusion protein | 149 | |
hasF | PA3404 | Outer membrane protein | 149 | |
hasS | PA3409 | Anti-sigma factor | 149 | |
hasI | PA4310 | ECF sigma factor | 149 | |
phuR | PA4710 | Major heme outer membrane receptor | 5 | 149 |
phuU | PA4707 | Inner membrane heme transporter | 1 | 149 |
phuV | PA4706 | Inner membrane heme transporter | 1 | 149 |
phuW | PA4705 | Possible PhuR auxiliary protein | 149 | |
phuS | PA4709 | Heme trafficking | 1 | 149 |
phuT | PA4708 | Heme trafficking | 149 | |
Catabolism | ||||
hemO | PA0672 | Major heme oxygenase | 1 | 10 |
bphO | PA4116 | Phytochrome heme oxygenase | 1 | 150 |
Regulation | ||||
dnr | PA0527 | NO responsive transcription factor | 1 | 56 |
anr | PA1544 | O2 responsive transcription factor | 56 | |
prrF1/2 | NAb | Iron responsive sRNA | 35 | |
Synthesis (of HemB) | ||||
gltX | PA3134 | Glutamyl-tRNA synthetase | 151 | |
hemA | ALA synthase | NA | 1 | |
hemA | PA4666 | Glu-tRNA reductase | 152 | |
hemL1 | PA3977 | Glutamate-1-semialdehyde 2,1-aminomutase | 1 | |
hemL2 | PA4088 | Glutamate-1-semialdehyde 2,1-aminomutase | 1 | |
hemL3 | PA5523 | Glutamate-1-semialdehyde 2,1-aminomutase | 2, 1c | 1 |
hemB | PA5243 | PBG synthase | 1 | |
hemC | PA5260 | HMB synthase | 1 | |
hemD | PA5259 | URO synthase | 1 | |
hemE | PA5034 | URO decarboxylase | 1 | |
hemF | PA0024 | Coproporphyrinogen decarboxylase | 1 | 1 |
hemN/Z | PA1546 | O2-independent coproporphyrinogen III oxidase | 2 | 1 |
hemG | Protoporphyrinogen dehydrogenase | NA | 1 | |
hemJd | PA0661 | Protoporphyrinogen dehydrogenase | 1 | 1 |
hemK | PA4664 | Methyltransferase | 1 | 1 |
hemY | PA5257 | Protoporphyrinogen oxygenase | 153 | |
hemH | PA4655 | Protoporphyrin ferrochelatase | 1 | |
hemX | PA5258 | Membrane heme biosynthesis regulatory protein | 153 | |
HemD1 synthesis | ||||
nirF | PA0516 | HemD1 biosynthesis | 2 | 154 |
nirL | PA0514 | HemD1 biosynthesis | 154 | |
nirJ | PA0511 | HemD1 biosynthesis | 1 | 154 |
nirE | PA0510 | Uroporphyrin III c-methyltransferase | 1 | 154 |
Siroheme | ||||
cysG | PA2611 | Siroheme synthase | 155 | |
cobA | PA1778 | Uroporphyrin III methyltransferase | 1 | 155 |
Colbamin (B12) | ||||
cobI | PA2904 | Cobalt-factor-2 C20-methyltransferase | 156 | |
cobG | PA2906 | Precorrin-3B synthase | 1 | 156 |
cobJ | PA2903 | Precorrin-3B C17-methyltransferase | 156 | |
cobM | PA2948 | Cobalt-precorrin-4 C11-methyltransferase | 156 | |
cobF | Precorrin-6A synthase | NA | 156 | |
cobK | PA2909 | Cobalt-precorrin-6A reductase | 1 | 156 |
cobH | PA2905 | Cobalt-precorrin-8 methylmutase | 156 | |
cobB | PA1273 | c-Diamide synthase | 156 | |
cobN1 | PA2944 | Cobaltochelatase | 3 | 156 |
cobN2 | PA1923 | Cobaltochelatase | 156 | |
cobO | PA1272 | Cob(I)alamin adenosyltransferase | 1c | 156 |
cobQ | PA1277 | Adenosylcobyric acid synthase | 156 | |
cobC | PA1276 | Threonine-phosphate decarboxylase | 156 | |
cobD | PA1275 | Adenosylcobinamide-phosphate synthase | 156 | |
cobP | PA1278 | Adenosylcobinamide kinase | 156 | |
cobV | PA1281 | Adenosylcobinamide-GDP ribazoletransferase | 156 | |
Hypothetical | PA1280 | Alpha-ribazole phosphatase | 156 | |
cobU | PA1279 | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | 1 | 156 |
cobL | PA2907 | Precorrin-6Y C5,15-methyltransferase | 156 |
Locus for PAO1 strain.
NA, not applicable.
Tn insertion disrupts predicted promoter.
Homology by sequence only.