Skip to main content
PLOS One logoLink to PLOS One
. 2021 Feb 4;16(2):e0246253. doi: 10.1371/journal.pone.0246253

Evaluating equality in prescribing Novel Oral Anticoagulants (NOACs) in England: The protocol of a Bayesian small area analysis

Ehsan Rezaei-Darzi 1,2, Parinaz Mehdipour 1,3, Mariachiara Di Cesare 4, Farshad Farzadfar 1, Shadi Rahimzadeh 4, Lisa Nissen 5, Alireza Ahmadvand 5,*
Editor: Michele Tizzoni6
PMCID: PMC7861433  PMID: 33539391

Abstract

Background

Atrial fibrillation (AF) is the most common cardiac arrhythmia, affecting about 1.6% of the population in England. Novel oral anticoagulants (NOACs) are approved AF treatments that reduce stroke risk. In this study, we estimate the equality in individual NOAC prescriptions with high spatial resolution in Clinical Commissioning Groups (CCGs) across England from 2014 to 2019.

Methods

A Bayesian spatio-temporal model will be used to estimate and predict the individual NOAC prescription trend on ‘prescription data’ as an indicator of health services utilisation, using a small area analysis methodology. The main dataset in this study is the “Practice Level Prescribing in England,” which contains four individual NOACs prescribed by all registered GP practices in England. We will use the defined daily dose (DDD) equivalent methodology, as recommended by the World Health Organization (WHO), to compare across space and time. Four licensed NOACs datasets will be summed per 1,000 patients at the CCG-level over time. We will also adjust for CCG-level covariates, such as demographic data, Multiple Deprivation Index, and rural-urban classification. We aim to employ the extended BYM2 model (space-time model) using the RStan package.

Discussion

This study suggests a new statistical modelling approach to link prescription and socioeconomic data to model pharmacoepidemiologic data. Quantifying space and time differences will allow for the evaluation of inequalities in the prescription of NOACs. The methodology will help develop geographically targeted public health interventions, campaigns, audits, or guidelines to improve areas of low prescription. This approach can be used for other medications, especially those used for chronic diseases that must be monitored over time.

Introduction

Background

Atrial fibrillation (AF) is the most common cardiac arrhythmia [1]. Men are more often affected than women, and the prevalence of AF increases with age [2]. In the UK, the age-sex standardised prevalence of AF has increased from 2.14% in 2000 to 3.29% in 2016 [2]. AF is a major cause of ischaemic stroke, as the risk of stroke is five times higher than in a person with a normal heart rhythm [3]. The age-adjusted AF incidence and prevalence are lower in women; however, the absolute number of men and women living with AF remains similar due to men’s shorter life expectancy [4].

The UK’s National Institute for Health and Care Excellence (NICE) has approved four licensed non-Vitamin K antagonist oral anticoagulants (NOACs): Apixaban, Dabigatran, Edoxaban, and Rivaroxaban. Dabigatran is a direct thrombin inhibitor, while the others are direct factor Xa inhibitors. Large international multicentre trials have shown that NOACs reduce the risk of stroke in patients with non-valvular atrial fibrillation similar to warfarin. Their ease of use, minimal need for monitoring, and negligible interactions with other drugs have made NOACs a mainstream treatment choice among clinicians [5]. NOACs have limiting characteristics as well, such as the clinicians’ inability to assess dosing, compliance, or wash out with an uncomplicated laboratory test, the lack of an antidote to rapidly control major haemorrhage, and reduced safety in emergent or urgent surgical procedures [6].

These NOACs are primarily prescribed to prevent stroke and systemic embolism in patients with non-valvular atrial fibrillation (AF) [710]. Additionally, they are indicated to treat deep vein thrombosis (DVT) and pulmonary embolism (PE), prevent and recurrent DVT and PE in adults, and to prevent atherothrombotic events after the management of acute coronary syndrome [1115].

Although anticoagulation to reduce the risk of stroke is an essential part of managing AF, patients are not always appropriately anticoagulated [16]. In 2013, an estimated 7,000 strokes could have been avoided, and 2,100 lives saved each year in England with appropriate AF management [17]. The NICE Implementation Collaborative has identified barriers to NOACs use at general practice levels, which include, but are not limited to:

  • the continued use of aspirin for stroke prevention,

  • health care professionals’ concerns regarding patient adherence, as there is no need for routine coagulation monitoring with NOACs,

  • the cost of prescribing NOACs in comparison to alternatives such as vitamin K antagonists (VKA), like Warfarin, or

  • the unavailability of specific antidotes for NOACs (except for Dabigatran, for which idarucizumab is available) to reverse the drugs’ effect in the event of a major bleed.

The NICE Implementation Collaborative explains that primary care providers prescribing NOACs need local leadership. Not all GPs can be expected to be experts in anticoagulation for atrial fibrillation. As the prevalence of atrial fibrillation continues to increase with age, local anticoagulant “champions” will be needed [3]. Also, in terms of the local care pathways, NICE-approved treatments must be made available for prescribing NOACs. The NHS’s Clinical Commissioning Groups (CCGs) have flexibility in making this happen and different models can be used to suit local needs.

The above-mentioned barriers to prescribing NOACs, plus variations in local leadership, general practitioners' expertise and confidence in prescribing NOACs, and CCG flexibility in prescribing cause variations across CCGs and over time. An AF diagnosis and anticoagulant-prescribing performance have practice-level variations [2]. There will be regional variation in stages of transiting to optimised NOAC prescriptions, with some relation to CCG-level characteristics in either burden of the clinical indications (AF) or barriers to switching to NOACs. Currently, little is known about the prescribing patterns at smaller geographical and administrative levels, e.g. CCGs, which can be a valuable index for economic and health service planning.

Aims and questions

NHS Digital has made large data and geographical information about prescription patterns across NHS available. This has made providing estimates of prescription patterns at smaller geographic levels possible and will help inform decisions and policymaking.

We aim to develop and initiate an analytical strategy for small-area estimates. This research will integrate concepts and methods from the fields of medicine, clinical epidemiology, population health, and statistics to provide evidence for policy and programmatic decisions regarding the prescribing patterns of NOACs in local populations. The objective of this research is to quantify–for the first time for individual NOACs–the prescribing patterns at “small-area” CCG levels. This will subsequently adjust the spatio-temporal prescribing patterns according to relevant covariates across CCGs in England (space) and over time.

This higher resolution information about NOACs across CCGs can demonstrate major differences in their prescribing patterns, potential variables that have contributed to these differences, and the amount of deviation. This information will allow policymakers to deliver feasible and cost-effective primary care interventions to improve and optimise NOAC prescribing at the population level.

Methods

This study explains the statistical methodology for estimating and predicting ‘prescribing data’ as an indicator of health services utilisation, using a small area analysis methodology.

The statistical methods in this study ‘borrow strength’ over time and space in a Bayesian framework. We will start from individual NOACs and correlate them over space (e.g., using a conditional autoregressive model) across CCGs, and over time (e.g., using random walk). The study will focus on four licensed, guideline-approved, available NOACs across the NHS. The international non-proprietary names (INNs) [generic names] of the NOACs are Apixaban, Dabigatran, Edoxaban, and Rivaroxaban.

The rationale for analysing NOACs

Our study will analyse prescribing patterns for NOACs according to the following:

  1. Clinical: NOACs are prescribed for clinically significant, diverse, and priority indications, i.e., AF, prevention of DVT and PE, or after acute MI. The licensed NOACs can be prescribed by general practitioners in England. Also, there is scientific evidence suggesting that the NOACs are not being prescribed optimally, and interventions are needed to increase their use in primary care [18]. However, the prescribing patterns between CCGs remain unknown.

  2. Health economics: NOACs are costly medications covered by the NHS. According to the NHS’s Prescribing by GP Practice datasets, Apixaban and Rivaroxaban had the top two highest ACT and NIC costs in July of 2019.

  3. Technical statistical advantage: for small area modelling using spatio-temporal analysis, the above mentioned four NOACs have a unique advantage. Prescribing one is mutually exclusive in prescribing the others, which means that they cannot be co-prescribed. Therefore, each medication can be modelled and interpreted individually.

Identifiers of individual NOACs

This study focuses on four individual NOACs with unique identifiers in the intended prescribing datasets, including their corresponding British National Formulary (BNF) codes. The BNF codes show what medication has been prescribed. Additionally, for aggregating the different dosage forms of these four NOACs, we will add the individual alphanumeric codes developed by the World Health Organisation (WHO), i.e., the Anatomical Therapeutic Chemical (ATC) Classification System. ATC classifies the active ingredients of drugs according to the organ or system on which they act and their therapeutic, pharmacological, and chemical properties.

Standardising different dosages and primary variables of interest

We will use the defined daily dose (DDD) methodology, as recommended by WHO, to provide a fixed unit of measurement independent of price, currency, package size, and strength. This enables us to assess trends in medication prescribing patterns and to compare different geographical areas over time. By definition, “DDD is the assumed average maintenance daily dose for a drug administered for its main indication in adults.” Table 1 summarises the individual NOACs’ identifiers, DDDs, and available dosage forms in the UK.

Table 1. Identifiers of the individual NOACs.

Name ATC code BNF Code DDD* (mg) Dosage Forms
Apixaban B01AF02 0208020Z0 10 2.5mg
5mg
Dabigatran etexilate B01AE07 0208020X0 300 75mg
110mg
150mg
Edoxaban B01AF03 0208020AA 60 30mg
60mg
Rivaroxaban B01AF01 0208020Y0 20 2.5mg
10mg
15mg
20mg

* DDD: Defined daily dose.

As a practical example, if 100 Edoxaban at 30 mg and 200 Edoxaban at 60 mg are prescribed at any point, the total DDD equivalent for Edoxaban is calculated as:

(100x30mg+200x60mg)/60mg=250

This total ‘DDD equivalent’ is unit-free and will serve as a generic parameter that can be compared at various locations over time.

However, to compare CCGs with each other and any CCG in different years regarding the total DDD equivalent, population changes over space and time must be considered. Therefore, we will divide the calculated total DDD equivalent by the population and then multiply the result by 1,000. This will give a continuous outcome variable, in the form of a rate called DDD per 1,000 population, which will be the primary variable in the analyses.

Adjusting for covariates

To account for variables that may explain the distribution of the primary variable of interest, we will use population-level data to include relevant covariates in the analytical model, including, but not limited to, age, socio-economic indicators, the number of prescribing practitioners, and the prevalence of specific medical conditions, such as atrial fibrillation.

Visualising outputs

To visualise the analysis outputs, we will use the Clinical Commissioning Groups (CCG) Boundaries as of April 2019, available from the Office for National Statistics website under the Open Government Licence v3.0 [19,20]. In compliance with copyright, we initially downloaded and reproduced a CCG map shapefile using R software version 3.5.1 (Fig 1).

Fig 1. Reproduced CCG map shapefile for England as of April 2019.

Fig 1

Source: Office for National Statistics licensed under the Open Government Licence v.3.0. Contains OS data © Crown copyright and database right [2020].

Reference year

For meaningful comparison between CCGs over time, we will set the 2019 calendar year as the reference time and will consider providing retrospective comparisons back to 2014.

Data sources

The main dataset in this study will be the “Practice Level Prescribing in England,” a list of all medicines, dressings, and appliances that are prescribed by all registered GP practices in England [21].

Practice Level Prescribing in England is available from August of 2010, and updated monthly, covering the specifics of each item prescribed. The data covers England NHS’s prescriptions and dispensation in the UK. Prescriptions that are written in England but dispensed outside of England are also included. The data includes prescriptions written by GPs and other non-medical prescribers, such as nurses and pharmacists attached to GP practices. Medications are identified by their British National Formulary (BNF) code. The practices listed include all those registered in England and several “dummy” practices created by Primary Care Trusts (PCTs) to identify prescriptions in certain environments or circumstances, including specialist clinics, hospices, prisons, and training units.

Each monthly data set is over 10 million rows. The data includes the total quantity of individual treatments prescribed for each practice identified by the BNF code. Six-calendar years of Apixaban, Rivaroxaban, Edoxaban, and Dabigatran etexilate prescriptions are extracted from January of 2014 to December of 2019 to form the main dataset. Databases used in this study do not contain clinical diagnoses. The study does not aim to differentiate between different indications for prescribing NOACs.

The GP practice list size (the number of registered patients) in five-years age bands and a sex distribution is available quarterly from January of 2014 and monthly from April of 2017 [22]. A linear interpolation will be conducted to cover unsupported demographic data, assuming a linear change in the sex and age discrepancy [23]. To capture the deprivation in England, the Index of Multiple Deprivation (IMD) 2019 by CCG is extracted from the Ministry of Housing, Communities & Local Government (MHCLG) [24,25]. The Overall Index of Multiple Deprivation is produced according to the seven domains of deprivation, with a particular weights approach (income (22.5%); employment (22.5%); education, skills and training deprivation (13.5%); health and disability (13.5%); crime (9.3%); barriers to housing and services (9.3%); living environment (9.0%)). The 2011 rural-urban classification (RUC) data by CCG is obtained from the Office for National Statistics (ONS), including population data [26].

Data processing

GP practice data were summed on the total quantity of each defined BNF code per CCG over time. The aggregated main data were linked to the demographic data to match standardised DDDs for individual NOAC identifiers per 1,000 patients for the average age and proportion of males. The CCG-level IMD summarised score for 2019 and RUC data from 2011 were merged regardless of their time effects. According to the boundary and name changes during the years, some of the CCGs had been updated or were merged [27]. Our data frame consisting of 191 CCGs, over six study years, was a total of 1146 records for standardised DDD of individual NOACs.

Analysis and modelling

Small-area health studies have two main features: the spatial location and the distribution of disease, which is known as georeferenced disease data [28]. It is important to use a proper analysis method [28]. Spatial models help quantify inequalities in drug prescriptions and assess trends. The model’s estimates for each district depend on its data and neighbours’ information [29]. Due to insufficient sample size at small geographical levels, direct estimators are too unreliable to provide adequate estimation, while Bayesian methods have improved estimates [30]. Bayesian methods are commonly used in modern statistical packages to facilitate quick computational algorithms, which was not feasible in the past [31].

The small area estimation method using the Bayesian technique can help count rare events in regions with a small population. In the Bayesian approach, we fit data to the model structure, add information, and perform an external validation. The Bayesian methods enable researchers a sensible interpretation from the statistical concepts, directly quantifying uncertainty and incorporating complex issues [32]. Hierarchical Bayesian modelling is used to estimate the incidence or prevalence rate in spatial epidemiology. In Bayesian hierarchical models, parameters have distributions based on prior beliefs defined by expert opinions or study investigators. These distributions control the parameter limits, which can vary in the model.

When bordering zones show a higher correlation than remote zones, we have real data with a spatial structure [33]. Hence, Besag’s intrinsic conditional autoregressive (ICAR) model can account for the spatial autocorrelation by putting information in from adjacent areas [34]. Although this model smooths the noisy estimates, it couldn’t explain the variability of these data entirely. The BYM model was introduced by Besag et al. in 1991 to combine both spatial and non-spatial random effects to account for all data variation [35]. However, it is difficult to assume independence between these two components in the BYM model. Nearly all variation can be addressed since the non-spatial random effect is included to capture the independent region-specific variation. Consequently, it is not possible to split the variability over the effects. The BYM2 model, a reparameterization of the BYM model, addresses this issue to interpret parameters and select hyper-priors for spatial and non-spatial precision [36]. The new model modified the variability distribution between two components using a single-precision parameter for the combined component and a mixing parameter for the amount of spatial to non-spatial variation [36]. To quantify the temporal trends in the data, the spatial model can be extended to a space-time model by adding a temporal term in the small areas [37]. We plan to employ the extended BYM2 model (space-time model) using an RStan package for GP Practice Presentation-level Data.

Small-area estimation model

The statistical analysis will be carried out using a Bayesian hierarchical framework. We will be able to investigate the geographical distribution of the outcome of interest, DDDs quantity. Let yi denote the DDDs quantity in each area (i). Since DDDs are a rare count measure, a Poisson distribution is usually used. In this case, areas with low DDDs quantity frequency might have small expected numbers, and sampling variability will occur with large variance. Due to this potential, Bayesian hierarchical models are used to achieve spatial smoothness of estimates [28].

A Poisson model will be used to map DDDs spatial distribution over time and to explore other related factors associated with DDDs at the CCG-level. The effects of clustering within the CCGs (i.e., patients travelling between different clinics but within a specific assigned CCG) will be present in the remaining error terms.

The DDDs quantity of individual NOACs is represented by yij in region i and time j. Let Eij denote the expected number of relevant people in area i and time j, which can be calculated based on the demographic data set. A Poisson distribution is used to model the DDDs quantity, given θij. It denotes the underlying true time and area-specific relative rate. The estimation of θij is yijEij, which corresponds to timely rates.

yij|θijPoisson(Eij×θij)

A general model formulation assumes that the log relative rate μij = log (θij) has a decomposition as below.

μij=β0+βxijT+κi*σ+β3timeij

The lognormal Poisson model includes both spatial smoothing and a random effect for non-spatial heterogeneity. The DDDs quantity (μij) in area i and year j measures the space and time variations in the data. The spatial structure of the data, according to the BYM2 as described by Riebler et al., 2016, includes an overall DDDs yearly rate at the country level (β0), CCG-level covariates (βxijT), a combined random effects component (κi) consisting of both spatial and non-spatial random-effects, and the temporal effect. This mixture of components consists of either spatial and non-spatial random effects to account for model error terms. The non-spatial error term is used to consider over-dispersion not modelled by the Poisson variates. In the latest version of the BYM models, a combination of these two components is incorporated in the Poisson model to make it more interpretable and allow for sensible hyperparameters [36].

κi=ηi((ρ/s)+vi((1ρ))

Information between adjacent areas can be captured with spatially-correlated random effect (ηi), which allows for sharing the similarity of characteristics. Spatially uncorrelated random effect accounts for heterogeneity within areas (νi). The mixture component κi smooths observations to the total mean μij, with a precision parameter σ (overall standard deviation for combined error terms) and weighting parameter σ for spatial/non-spatial variation. σ has a value between zero and one and models the amount of the variance that comes from the spatially correlated error terms over the variance that comes from the independent error terms. In this formula, s is the scaling factor that scales the proportion of variance σ and lets σ be the standard deviation of the combined components. Spatial variation due to different amounts of DDDs in each CCG and geographical inequalities in CCGs is captured by this combined parameter. The temporal component β3 smooths variation over time (yearly) and considers potential time correlation. We will account for exposure time by including it as a variable in the Poisson model. However, in the future, we will consider other time models that could fit our data.

We will develop the inferencing of the Bayesian model in the open-source RStan package, which is a highly expressive general probabilistic programming language for the specification of Bayesian statistical models [3840]. Stan used No-U-Turn Sampler, or NUTS, an extension of the Hamilton Monte Carlo algorithm sampler, to draw samples from the model parameters and residual errors from the posterior distribution. This algorithm, introduced by Hoffman et al. in 2014, efficiently minimizes manual interventions and allows users to save time and focus on model development [41]. NUTS is a simpler algorithm that is used to select sample points that have a wider distribution to prevent redundant sampling steps [41]. For hierarchical models comprising a complex posterior, such as the BYM models, Stan’s NUTS sampler makes more robust estimates compared to the Gibbs or Metropolis samplers [33].

The posterior summaries, including the median and 95% credible interval (the 2.5th and 97.5th percentiles) for each parameter, will be calculated from the drawn samples [41].

Assumptions for the data and the model

The outputs of our model may be different from the actual population characteristics because of sampling and non-sampling errors in the data and assumptions underlying the modelling techniques. In the modelling and analysis, we may need to make a few assumptions, such as none of these four NOACs are withdrawn from commercial markets, prescribing patterns or authorisation for these NOACs do not change significantly over time (for example, via a major change in clinical practice guidelines), our estimates will also be model-unbiased under the assumption of the linear association between the response variable and the area-specific covariates when only area-specific auxiliary information is available, and all small (CCGs) and large areas (country) have the same characteristics [42].

These assumptions are made because they have implications in interpreting model output. If any of the assumptions appear to be true, the effects on the model’s output will be checked through empirical-defining counterfactual scenarios (a posteriori) and rerunning the model.

Model validation

To assess the validity of our estimations, we will conduct a sensitivity analysis in two stages [43]. In the first stage, we will randomly mask 10% of our data points and we will repeat all of the models for the remaining 90% of the data. We will use the (average) root mean squared error (RMSE) as a measure for the average squared difference between model estimates and the observed values. The RMSE is often used to measure the differences between the values predicted by a model and the observed values, a useful measure to capture model precision [44]. In the next stage, we will calculate the proportion of data points in our masked data set that fell within the 95% uncertainty interval of the withheld data.

The validation framework will check each model’s performance using the summary of the parameters and their various quantities. These include the posterior mean, the posterior standard deviation, and various quantiles computed from the draws. We will check MCMC model-fitting measurements, including the Monte Carlo standard error (se_mean), the effective sample size (n_eff), and the R-hat statistic (Rhat).

Ethical considerations

This study uses publicly-available data only, so no ethical approval is required. NHS and ONS data sets have open government licenses and we will cite the principal investigators of the secondary data sets.

Open data sharing

The Research Data Australia platform will be used to make the models, codes, and detailed outputs available to the public and professionals [45]. Research Data Australia, an Australian Government-supported data discovery service of the Australian Research Data Commons, helps in finding, accessing, and reusing research data. Data will be stored on authors’ university-affiliated storage platforms, with descriptions of and links to the data provided on Research Data Australia.

Discussion

To our knowledge, this study is the first small-area analysis of the distribution of NOACs in England using the Bayesian approach. In comparison to warfarin, the vitamin K antagonists Dabigatran, Apixaban, Rivaroxaban, and Edoxaban have proven to be comparably effective in preventing stroke in AF and in treating venous thromboembolism. They are associated with a reduced risk of intracranial bleeding. NOACs’ superiority compared to vitamin-K anticoagulants has been also acknowledged by the WHO, who has included Dabigatran (as representative of the pharmacological class) on the 21st WHO Essential Medicine List [46].

However, as the selection of a particular NOAC will depend on a few factors, the prescribing patterns are different across geographic areas and over time. These selection factors can be individual-related factors, such as renal function, possible drug-drug interactions, or preferred dosing schedules (once- or twice-daily), prescriber-related factors, such as familiarity with NOACs and their dosing or being comfortable prescribing NOACs; and system-related factors, such as the availability of individual NOACs at a particular CCG.

Research implications

This study will identify possible similarities or differences in prescribing individual NOACs over time and space to help identify possible gaps in NOAC prescriptions at the CCG level. Specifically, quantifying spatio-temporal differences will enable the evaluation of inequalities in prescribing NOACs. This quantification will be meaningful in developing geographically targeted public health interventions, campaigns, audits, or guidelines to improve low-prescribing areas.

Moreover, the spatio-temporal analysis in this study will be the fundamental framework for visualising variations in prescribing NOACs over time and highlighting possible geographical clusters, or ‘hot-spots’, of NOAC prescriptions.

The Bayesian spatio-temporal modelling of prescribing patterns for NOACs will help predict future patterns and provide estimation based on hypothetical scenarios or sensitivity analyses. It will assess counterfactual prescription scenarios for better prescriber preparedness outcomes at the CCG level and support decision making at the prescriber or CCG level.

Target audiences of this research

Public health researchers, individual clinician prescribers, such as general practitioners and nurse practitioners, CCG managers across England, pharmacists working with GP practices, and NHS Implementation Collaborative groups are the target audiences of this research.

Pros of this analytical approach

This study emphasizes the intersection of time and space in pharmacoepidemiology studies. A small number of studies consider the effects of combining time and location to estimate drug trends. Some researchers map the distribution of prescribing geo-referenced data by applying a likelihood method to a specific time. This paper is the first to use a hierarchical Bayesian spatiotemporal model to estimate standardised drug quantities of prescription data in small areas. The Bayesian hierarchical framework is more flexible and handles small amounts of data with spatial correlation. Bayesian hierarchical methods enable smoothing by borrowing information from neighbouring units, which leads to more stable estimates. Using an RStan package is another advantage of this study. This powerful programming language allows for disconnected subgraphs and island regions and better estimates of models with complex posteriors, such as the BYM model [33].

Future directions

The future direction of this research includes the economic evaluation of prescribing NOACs at the small-area level, dynamic or real-time visualisation of analytical outputs for NOACs to translate our findings into practice and policy, predicting future patterns, and conducting this small-area analysis for other medication classes (individually or in groups). Additionally, the analytical approach from this study can be used for more detailed comparisons with other countries, including Canada, Australia, or New Zealand, depending on data availability.

Considerations and limitations of the study

This study uses aggregate, population-level data, which is a similar design approach to ecological studies, without any gender- or age-specific data. Therefore, interpreting the results and outputs of this spatio-temporal small area analysis should be done at the CCG level, not at individual prescriber or patient levels, to prevent any ecological fallacies.

The main dataset that we will use for the Bayesian analysis, although rich in medication-related information, contains information for other relevant variables or covariates. Therefore, the inclusion of other covariates for statistical adjustment purposes depends on their availability from reliable sources over time.

Additionally, the main dataset that we will use for analysis will only cover CCGs in England, not the United Kingdom. Therefore, geographical interpretation and visualisation of the outputs may be limited.

The Prescribing by GP Practice database covers prescriptions by general and nurse practitioners. Data from other authorised prescribers, such as specialists or trainees working at hospitals or private practices, are not reflected in this dataset or analysis. General practitioners on average prescribe approximately 60–65% of all medications across NHS. However, the actual percentage of NOACs prescribed by GPs is unknown.

The four licensed NOACs analysed in this study are known by their generic names in the main data set. Therefore, parties interested in specific brand-focused information need more details, such as the market share of a brand, to translate the outputs of this study to their practice.

For optimal and meaningful interpretation, statistical model assumptions should be considered. Otherwise, reliable interpretation may not be possible. Finally, this study requires very large data sets, which makes replicating the methodology more suitable for advanced statistical software or packages.

Conclusion

This study offers a new statistical approach to modelling pharmacoepidemiologic data. The generic analytical approach of this study can be applied to other medications, especially those prescribed for chronic conditions that must be taken for a long time (possibly a lifetime).

Data Availability

All relevant data from this study will be made available upon study completion.

Funding Statement

The author(s) received no specific funding for this work.

References

  • 1.National Institute for Health and Care Excellence. Support for commissioning: anticoagulation therapy 2020, April 04 [Available from: https://www.nice.org.uk/guidance/cmg49.
  • 2.Adderley NJ, Ryan R, Nirantharakumar K, Marshall T. Prevalence and treatment of atrial fibrillation in UK general practice from 2000 to 2016. Heart. 2019;105(1):27–33. 10.1136/heartjnl-2018-312977 [DOI] [PubMed] [Google Scholar]
  • 3.National Institute for Health and Care Excellence. Atrial fibrillation (update) final scope 2020, April 04 [Available from: https://www.nice.org.uk/guidance/cg180/resources/atrial-fibrillation-update-final-scope.
  • 4.Ko D, Rahman F, Schnabel RB, Yin X, Benjamin EJ, Christophersen IE. Atrial fibrillation in women: epidemiology, pathophysiology, presentation, and prognosis. Nat Rev Cardiol. 2016;13(6):321–32. 10.1038/nrcardio.2016.45 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Pol D, Curtis C, Ramkumar S, Bittinger L. NOACs now mainstream for the use of anticoagulation in non-valvular atrial fibrillation in Australia. Heart, Lung and Circulation. 2019;28(4):e40–e2. 10.1016/j.hlc.2018.03.010 [DOI] [PubMed] [Google Scholar]
  • 6.Reiffel JA, Weitz JI, Reilly P, Kaminskas E, Sarich T, Sager P, et al. NOAC monitoring, reversal agents, and post-approval safety and effectiveness evaluation: A cardiac safety research consortium think tank. Am Heart J. 2016;177:74–86. 10.1016/j.ahj.2016.04.010 [DOI] [PubMed] [Google Scholar]
  • 7.Edwards S, Hamilton V, Nherera L, Trevor N, Barton S. Rivaroxaban for the prevention of stroke and systemic embolism in people with atrial fibrillation: A Single Technology Appraisal. BMJ-TAG, London: 2011. [Google Scholar]
  • 8.Ahmad Y, Lip GY. Dabigatran etexilate for the prevention of stroke and systemic embolism in atrial fibrillation: NICE guidance. BMJ Publishing Group Ltd and British Cardiovascular Society; 2012. [DOI] [PubMed] [Google Scholar]
  • 9.National Institute for Health and Care Excellence. Apixaban for preventing stroke and systemic embolism in people with nonvalvular atrial fibrillation 2019, December 24 [Available from: https://www.nice.org.uk/guidance/ta275.
  • 10.Greenhalgh J, Longworth L, Crossan C, Singh J, Bagust A, Beale S, et al. Edoxaban for preventing stroke and systemic embolism in people with non-valvular atrial fibrillation: A Single Technology Appraisal. Evidence Review Group Report to NICE; 2015. [Google Scholar]
  • 11.Mersey P. DABIGATRAN ETEXILATE (Pradaxa®) for the treatment and secondary prevention of Deep Vein Thrombosis and/or Pulmonary Embolism.
  • 12.National Institute for Health and Care Excellence. Rivaroxaban for treating pulmonary embolism and preventing recurrent venous thromboembolism 2020, April 04 [Available from: https://www.nice.org.uk/Guidance/TA287.
  • 13.National Institute for Health and Care Excellence. Apixaban for the treatment and secondary prevention of deep vein thrombosis and/or pulmonary embolism 2020, April 04 [Available from: https://www.nice.org.uk/guidance/ta341.
  • 14.National Institute for Health and Care Excellence. Edoxaban for treating and for preventing deep vein thrombosis and pulmonary embolism 2020, April 04 [Available from: https://www.nice.org.uk/guidance/ta354. [PubMed]
  • 15.National Institute for Health and Care Excellence. Rivaroxaban for preventing adverse outcomes after acute management of acute coronary syndrome 2020, April 04 [Available from: https://www.nice.org.uk/guidance/ta335.
  • 16.Amin A. Oral anticoagulation to reduce risk of stroke in patients with atrial fibrillation: current and future therapies. Clinical interventions in aging. 2013;8:75 10.2147/CIA.S37818 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Health Do. Cardiovascular Disease Outcomes Strategy. Improving outcomes for people with or at risk of cardiovascular disease. DH; London; 2013. [Google Scholar]
  • 18.Loo SY, Dell'Aniello S, Huiart L, Renoux C. Trends in the prescription of novel oral anticoagulants in UK primary care. Br J Clin Pharmacol. 2017;83(9):2096–106. 10.1111/bcp.13299 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Office for National Statistics. Licences 2020, January 17 [Available from: https://www.ons.gov.uk/methodology/geography/licences.
  • 20.Office for National Statistics. Clinical Commissioning Groups (April 2019) Boundaries EN BFE 2020, January 17 [Available from: https://geoportal.statistics.gov.uk/datasets/clinical-commissioning-groups-april-2019-boundaries-en-bfe.
  • 21.NHS Digital. Practice Level Prescribing Data 2019, 24 December [Available from: https://digital.nhs.uk/data-and-information/publications/statistical/practice-level-prescribing-data.
  • 22.NHS Digital. Patients Registered at a GP Practice 2019, 24 December [Available from: https://digital.nhs.uk/data-and-information/publications/statistical/patients-registered-at-a-gp-practice.
  • 23.Agirrezabal I, Cabasés JM, Di Tanna GL, Sánchez-Iriso E. Inequalities in prescription rates of anti-osteoporosis drugs in primary care in England: A practice-level prescribing data analysis in 2013–2018. Bone. 2020;130:115125 10.1016/j.bone.2019.115125 [DOI] [PubMed] [Google Scholar]
  • 24.GOV.UK. English indices of deprivation 2015 2019, September 26 [Available from: https://www.gov.uk/government/statistics/english-indices-of-deprivation-2015.
  • 25.GOV.UK. English indices of deprivation 2019 2019, September 26 [Available from: https://www.gov.uk/government/statistics/english-indices-of-deprivation-2019.
  • 26.Office for National Statistics. Rural Urban Classification (2011) of CCG including population in England 2020, January 17 [Available from: https://geoportal.statistics.gov.uk/datasets/rural-urban-classification-2011-of-ccgs-including-population-in-england.
  • 27.NHS. Clinical commissioning group details 2019, December 24 [Available from: https://www.england.nhs.uk/ccg-details/.
  • 28.Lawson AB. Bayesian disease mapping: hierarchical modeling in spatial epidemiology: Chapman and Hall/CRC; 2013. [Google Scholar]
  • 29.Di Cesare M, Bhatti Z, Soofi SB, Fortunato L, Ezzati M, Bhutta ZA. Geographical and socioeconomic inequalities in women and children's nutritional status in Pakistan in 2011: an analysis of data from a nationally representative survey. The Lancet Global Health. 2015;3(4):e229–e39. 10.1016/S2214-109X(15)70001-X [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Rao J. Some new developments in small area estimation. 2003. [Google Scholar]
  • 31.Zellner A. Bayesian and non-Bayesian approaches to statistical inference and decision-making. Journal of computational and applied mathematics. 1995;64(1–2):3–10. [Google Scholar]
  • 32.Gelman A, Carlin JB, Stern HS, Dunson DB, Vehtari A, Rubin DB. Bayesian data analysis: Chapman and Hall/CRC; 2013. [Google Scholar]
  • 33.Morris M, Wheeler-Martin K, Simpson D, Mooney SJ, Gelman A, DiMaggio C. Bayesian hierarchical spatial models: Implementing the Besag York Mollié model in stan. Spatial and spatio-temporal epidemiology. 2019;31:100301 10.1016/j.sste.2019.100301 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34.Besag J. Spatial interaction and the statistical analysis of lattice systems. Journal of the Royal Statistical Society: Series B (Methodological). 1974;36(2):192–225. [Google Scholar]
  • 35.Besag J, York J, Mollié A. Bayesian image restoration, with two applications in spatial statistics. Annals of the institute of statistical mathematics. 1991;43(1):1–20. [Google Scholar]
  • 36.Riebler A, Sørbye SH, Simpson D, Rue H. An intuitive Bayesian spatial model for disease mapping that accounts for scaling. Statistical methods in medical research. 2016;25(4):1145–65. 10.1177/0962280216660421 [DOI] [PubMed] [Google Scholar]
  • 37.DiMaggio C. Small-area spatiotemporal analysis of pedestrian and bicyclist injuries in New York City. Epidemiology. 2015;26(2):247–54. 10.1097/EDE.0000000000000222 [DOI] [PubMed] [Google Scholar]
  • 38.Stan Development Team. RStan: The R interface to Stan. R package version 2.17.3. 2018 [Available from: http://mc-stan.org.
  • 39.Stan Development Team. Stan Modeling Language User Guid and Reference Manual, Version 2.18.0. 2018 [Available from: http://mc-stan.org.
  • 40.Stan Development Team. The Stan Core Library, Version 2.18.0. 2018 [Available from: http://mc-stan.org.
  • 41.Hoffman MD, Gelman A. The No-U-Turn sampler: adaptively setting path lengths in Hamiltonian Monte Carlo. Journal of Machine Learning Research. 2014;15(1):1593–623. [Google Scholar]
  • 42.Rahman A. A review of small area estimation problems and methodological developments. 2008. [Google Scholar]
  • 43.Rajaratnam JK, Marcus JR, Flaxman AD, Wang H, Levin-Rector A, Dwyer L, et al. Neonatal, postneonatal, childhood, and under-5 mortality for 187 countries, 1970–2010: a systematic analysis of progress towards Millennium Development Goal 4. The Lancet. 2010;375(9730):1988–2008. [DOI] [PubMed] [Google Scholar]
  • 44.Srebotnjak T, Mokdad AH, Murray CJ. A novel framework for validating and applying standardized small area measurement strategies. Population health metrics. 2010;8(1):26 10.1186/1478-7954-8-26 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 45.Research Data Australia. A service built on sharing 2020, September 20 [Available from: https://researchdata.edu.au/page/about.
  • 46.Neumann I, Schünemann H. Comments to the “Application to add DOACs to WHO Model List of Essential Medicines as a medicine for treatment of Non-Valvular Atrial Fibrillation (NVAF) and Treatment of Venous Thromboembolism (VTE)”.

Decision Letter 0

Michele Tizzoni

27 Aug 2020

PONE-D-20-10082

Evaluating Equality in Prescribing Novel Oral Anticoagulants (NOACs) in England: Protocol of a Bayesian Small Area Analysis

PLOS ONE

Dear Dr. Ahmadvand,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Reviewer #1 has made some relevant remarks. In particular, I recommend the authors improve the clarity of their writing in the Aims and questions section. 

Please submit your revised manuscript by Oct 03 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Michele Tizzoni

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2.We suggest you thoroughly copyedit your manuscript for language usage, spelling, and grammar. If you do not know anyone who can help you do this, you may wish to consider employing a professional scientific editing service.  

Whilst you may use any professional scientific editing service of your choice, PLOS has partnered with both American Journal Experts (AJE) and Editage to provide discounted services to PLOS authors. Both organizations have experience helping authors meet PLOS guidelines and can provide language editing, translation, manuscript formatting, and figure formatting to ensure your manuscript meets our submission guidelines. To take advantage of our partnership with AJE, visit the AJE website (http://learn.aje.com/plos/) for a 15% discount off AJE services. To take advantage of our partnership with Editage, visit the Editage website (www.editage.com) and enter referral code PLOSEDIT for a 15% discount off Editage services.  If the PLOS editorial team finds any language issues in text that either AJE or Editage has edited, the service provider will re-edit the text for free.

Upon resubmission, please provide the following:

  • The name of the colleague or the details of the professional service that edited your manuscript

  • A copy of your manuscript showing your changes by either highlighting them or using track changes (uploaded as a *supporting information* file)

  • A clean copy of the edited manuscript (uploaded as the new *manuscript* file)

3.Thank you for stating the following financial disclosure:

 [The funders had and will not have a role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.].

At this time, please address the following queries:

  1. Please clarify the sources of funding (financial or material support) for your study. List the grants or organizations that supported your study, including funding received from your institution.

  2. State what role the funders took in the study. If the funders had no role in your study, please state: “The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.”

  3. If any authors received a salary from any of your funders, please state which authors and which funders.

  4. If you did not receive any funding for this study, please state: “The authors received no specific funding for this work.”

Please include your amended statements within your cover letter; we will change the online submission form on your behalf.

4. We note that you have stated that you will provide repository information for your data at acceptance. Should your manuscript be accepted for publication, we will hold it until you provide the relevant accession numbers or DOIs necessary to access your data. If you wish to make changes to your Data Availability statement, please describe these changes in your cover letter and we will update your Data Availability statement to reflect the information you provide.

5.We note that [Figure(s) 1] in your submission contain [map/satellite] images which may be copyrighted. All PLOS content is published under the Creative Commons Attribution License (CC BY 4.0), which means that the manuscript, images, and Supporting Information files will be freely available online, and any third party is permitted to access, download, copy, distribute, and use these materials in any way, even commercially, with proper attribution. For these reasons, we cannot publish previously copyrighted maps or satellite images created using proprietary data, such as Google software (Google Maps, Street View, and Earth). For more information, see our copyright guidelines: http://journals.plos.org/plosone/s/licenses-and-copyright.

We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission:

1.    You may seek permission from the original copyright holder of Figure(s) [1] to publish the content specifically under the CC BY 4.0 license. 

We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text:

“I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.”

Please upload the completed Content Permission Form or other proof of granted permissions as an "Other" file with your submission.

In the figure caption of the copyrighted figure, please include the following text: “Reprinted from [ref] under a CC BY license, with permission from [name of publisher], original copyright [original copyright year].”

2.    If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only.

The following resources for replacing copyrighted map figures may be helpful:

USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/

The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/

Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html

NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/

Landsat: http://landsat.visibleearth.nasa.gov/

USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/#

Natural Earth (public domain): http://www.naturalearthdata.com/

Additional Editor Comments (if provided):

I apologies for the long time needed to complete the assessment but the COVID-19 pandemic has made very hard to find independent referees available for review.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Reviewer #1: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The paper describes a protocol for a study that will estimate the equality in prescribing individual NOACs with high spatial resolution in Clinical Commissioning Groups (CCGs) across England from 2013 to 2019, using Bayesian spatio-temporal modelling.

The introduction is focussed on the positive aspects of NOACs and does not refer to the negative or adverse effects associated with these medicines. A balanced review would be useful.

Placement of references should be at the end of a statement/sentence not before e.g. ‘These NOACS… for (5-8) 1)…’ it is confusing to have the references and then numbering of points.

Page 4 – ‘epidemic of atrial fibrillation’ is used but ‘epidemic’ is probably not the right word to use here.

Aims and questions section appears very long. The first sentence requires re-wording – it may not be required since it is covered already.

Methods – is the prescribing data linked to diagnosis? Will other indications other than Afib be considered in the analysis?

A reference to the ‘non-optimal’ prescribing is required.

How is clustering within areas accounted for?

2019 is used as a reference year, but the data are available april 2013-april 2019, so is it the first 4 months of 2019 is reference or the year May2018-April 2019? Not clear

How far forward will be considered for predictions?

Could age/gender specific DDDs be considered as large differences in age and gender specific prescribing?

Analysis and modelling section – more explanation of the Bayesian models would be included and why they are used over non-Bayesian approaches? Also, a brief intro to Hierarchical modelling – not all readers may be familiar.

Statement ‘BYM introduced by (30)….’ Please give authors name etc and not a reference. Also how does BYM address the issue with inter-dependency? Some explanation would be helpful

How was the temporal term defined? Monthly, yearly??

SAE model – provide references or explain the Bayesian Hierarchical framework. This section could be much clearer – particularly when explaining ‘spatial variation due to different…. By this combined parameters’. This was not clear.

‘NOVAs’ instead of ‘NOCAs’ needs correcting.

Explain why using log normal used?

Formula is used without explanation of the meaning of the parameters, It is assumed the reader is aware of these.

For the explanation of Rstan ‘Stan used no … from posterior’ requires further referencing. Why does NUTs sampler make ‘appropriate estimate’ over others – the justification is not evident.

Assumptions – how will these assumptions be tested? Should sensitivity analysis be applied here?

Validation – presented in the ‘past’ tense which reads as if this work/analysis has been done already, even though this is a protocol for the analysis. Please correct.

Ethical considerations – similarly using ‘past’ tense. Is this appropriate?

Discussion – there is some repetition with what is included in the introduction - is this required in a protocol?

There is no mention of whether the data and/or models will be made available through open source platforms. This is required.

The level of English could be improved e.g. pg 2 discussion last sentence ‘ can be monitor for a long time’ rather than ‘monitored’. A thorough proof-read of the paper is required.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Feb 4;16(2):e0246253. doi: 10.1371/journal.pone.0246253.r002

Author response to Decision Letter 0


7 Oct 2020

Thanks for the time and valuable comments. We have uploaded our responses to editor and reviewer in the "Response to reviewers" file.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 1

Michele Tizzoni

16 Nov 2020

PONE-D-20-10082R1

Evaluating Equality in Prescribing Novel Oral Anticoagulants (NOACs) in England: Protocol of a Bayesian Small Area Analysis

PLOS ONE

Dear Dr. Ahmadvand,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

The Reviewer has identified some minor issues that should be taken into account in a revised version of the manuscript.

Please submit your revised manuscript by Dec 31 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Michele Tizzoni

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Reviewer #1: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: Most of the previous points have been addressed - however, there are two further minor corrections required.

1. Original Question in first review: Could age/gender specific DDDs be considered, as large differences in age and gender specific prescribing?

The response and change to the manuscript text is not what was requested. I understand that the data are not available by age or gender, and therefore, the following sentence in methods can be removed as it adds confusion rather than clarity.

‘DDD is not age- or gender-specific, and therefore, it can suitably be used in our modelling which is on

population-level, aggregate prescription data without gender or age specifications.’

2. Thorough Proof-read: Despite a request for a thorough proof-read for English, some errors still need to be addressed. A list of examples is provided, but not exhaustive:

In the methods

‘Health economical ‘– change to health economics

‘In compliance with the copy rights,’ – change to ‘in compliance with copyright’

‘Due to insufficient sample size prescribed at the small levels, direct estimators are unreliable to provide adequate..’ - please rephrase ‘at the small levels’ so it is clear what this means?

‘In Bayesian approach’ – should be ‘In the Bayesian approach..’

‘These distributions control the parameters limits that they can vary in the model.’ – rephrase

‘Since the non-spatial random effect is included to capture for independent region-specific variation, most or all of the variation can be addressed.’ – rephrase e.g. ‘Since the non-spatial random effect is included to enable the capture of the independent region-specific variation,….’

‘precision parameter for combined component and a mixing parameter..’ – change to ‘precision parameter for the combined component and a mixing parameter’

‘The effects of clustering within the CCGs (….) will show itself in the remainder error terms of the model.’ – change to ‘the effect of clustering with the CCGs () will be present in the remaining error terms…’

‘If any of the assumptions seems to be true, the main way … through empirical defining counterfactual..’ – change to ‘ If any of the assumptions appear to be true, the main way … through empirically defining counterfactual’

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Feb 4;16(2):e0246253. doi: 10.1371/journal.pone.0246253.r004

Author response to Decision Letter 1


6 Jan 2021

In response to editor and reviewer, we have revised and improved the language of the paper using a professional English language editting system. We have also attached a document "Response to Reviewer".

Thank you.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 2

Michele Tizzoni

19 Jan 2021

Evaluating Equality in Prescribing Novel Oral Anticoagulants (NOACs) in England: The Protocol of a Bayesian Small Area Analysis

PONE-D-20-10082R2

Dear Dr. Ahmadvand,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Michele Tizzoni

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Does the manuscript provide a valid rationale for the proposed study, with clearly identified and justified research questions?

The research question outlined is expected to address a valid academic problem or topic and contribute to the base of knowledge in the field.

Reviewer #1: Yes

**********

2. Is the protocol technically sound and planned in a manner that will lead to a meaningful outcome and allow testing the stated hypotheses?

The manuscript should describe the methods in sufficient detail to prevent undisclosed flexibility in the experimental procedure or analysis pipeline, including sufficient outcome-neutral conditions (e.g. necessary controls, absence of floor or ceiling effects) to test the proposed hypotheses and a statistical power analysis where applicable. As there may be aspects of the methodology and analysis which can only be refined once the work is undertaken, authors should outline potential assumptions and explicitly describe what aspects of the proposed analyses, if any, are exploratory.

Reviewer #1: Yes

**********

3. Is the methodology feasible and described in sufficient detail to allow the work to be replicable?

Reviewer #1: Yes

**********

4. Have the authors described where all data underlying the findings will be made available when the study is complete?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception, at the time of publication. The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above and, if applicable, provide comments about issues authors must address before this protocol can be accepted for publication. You may also include additional comments for the author, including concerns about research or publication ethics.

You may also provide optional suggestions and comments to authors that they might find helpful in planning their study.

(Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: No further comments to add to the paper. My review of this protocol is complete and I have no additional comments.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Acceptance letter

Michele Tizzoni

25 Jan 2021

PONE-D-20-10082R2

Evaluating Equality in Prescribing Novel Oral Anticoagulants (NOACs) in England: The Protocol of a Bayesian Small Area Analysis

Dear Dr. Ahmadvand:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Michele Tizzoni

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    Attachment

    Submitted filename: Response to Reviewers.docx

    Attachment

    Submitted filename: Response to Reviewers.docx

    Data Availability Statement

    All relevant data from this study will be made available upon study completion.


    Articles from PLoS ONE are provided here courtesy of PLOS

    RESOURCES