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. 2021 Mar 5;16(3):e0248308. doi: 10.1371/journal.pone.0248308

A concerted probiotic activity to inhibit periodontitis-associated bacteria

Paul Mathias Jansen 1, Mohamed M H Abdelbary 1, Georg Conrads 1,*
Editor: Abdelwahab Omri2
PMCID: PMC7935250  PMID: 33667279

Abstract

Periodontitis can result in tooth loss and the associated chronic inflammation can provoke several severe systemic health risks. Adjunctive to mechanical treatment of periodontitis and as alternatives to antibiotics, the use of probiotic bacteria was suggested. In this study, the inhibitory effect of the probiotic Streptococcus salivarius subsp. salivarius strains M18 and K12, Streptococcus oralis subsp. dentisani 7746, and Lactobacillus reuteri ATCC PTA 5289 on anaerobic periodontal bacteria and Aggregatibacter actinomycetemcomitans was tested. Rarely included in other studies, we also quantified the inverse effect of pathogens on probiotic growth. Probiotics and periodontal pathogens were co-incubated anaerobically in a mixture of autoclaved saliva and brain heart infusion broth. The resulting genome numbers of the pathogens and of the probiotics were measured by quantitative real-time PCR. Mixtures of the streptococcal probiotics were also used to determine their synergistic, additive, or antagonistic effects. The overall best inhibitor of the periodontal pathogens was L. reuteri ATCC PTA 5289, but the effect is coenzyme B12-, anaerobiosis-, as well as glycerol-dependent, and further modulated by L. reuteri strain DSM 17938. Notably, in absence of glycerol, the pathogen-inhibitory effect could even turn into a growth spurt. Among the streptococci tested, S. salivarius M18 had the most constant inhibitory potential against all pathogens, followed by K12 and S. dentisani 7746, with the latter still having significant inhibitory effects on P. intermedia and A. actinomycetemcomitans. Overall, mixtures of the streptococcal probiotics did inhibit the growth of the pathogens equally or–in the case of A. actinomycetemcomitans- better than the individual strains. P. gingivalis and F. nucleatum were best inhibited by pure cultures of S. salivarius K12 or S. salivarius M18, respectively. Testing inverse effects, the growth of S. salivarius M18 was enhanced when incubated with the periodontal pathogens minus/plus other probiotics. In contrast, S. oralis subsp. dentisani 7746 was not much influenced by the pathogens. Instead, it was significantly inhibited by the presence of other streptococcal probiotics. In conclusion, despite some natural limits such as persistence, the full potential for probiotic treatment is by far not utilized yet. Especially, further exploring concerted activity by combining synergistic strains, together with the application of oral prebiotics and essential supplements and conditions, is mandatory.

Introduction

Periodontal diseases are one of the most prevalent diseases in the world and can result in chronic inflammation and tooth loss [1]. Beside these oral symptoms, prolonged chronic to severe cases are associated with several systemic diseases such as atherosclerosis and diabetes mellitus [2]. Periodontitis, as the irreversible and most prevalent form of periodontal diseases, is caused by a dysbiotic shift in the subgingival biofilm frequently provoking an immune response. This interplay is the driving force for the chronic inflammation. Several bacterial species such as Aggregatibacter actinomycetemcomitans, Fusobacterium nucleatum, Porphyromonas gingivalis, Prevotella intermedia, and fastidious anaerobes including Tannerella forsythia and Treponema denticola are implicated in these shifts [3].

Probiotic bacteria have been suggested as an alternative or supplement to the conventional treatment of periodontitis, which includes mechanical removal of biofilm and antibiotics in severe (high stage, high grade) cases [4]. Due to the dramatic increase of antimicrobial resistance, many efforts are made to reduce prescription of antibiotics and to change from therapy to prevention. Probiotics might help to prevent infectious diseases or microbial dysbiosis, with periodontal diseases as a popular target because of its high prevalence and risk of sequelae (Global Burden of Disease Study, [5]). Two groups of probiotics were subject of this study, three streptococcal strains releasing cell membrane directed antimicrobial peptides called bacteriocins, and Lactobacillus reuteri producing 3-hydroxypropanal (reuterin).

Streptococcus salivarius subspecies salivarius (abbreviated henceforward as S. salivarius) strains K12 and M18 (Mia) were already explored as anti-pharyngitis, anti-caries and anti-halitosis probiotics [68]. Furthermore, K12 and M18 both significantly inhibited the expression of the cytokines IL-6 and IL-8 of gingival fibroblasts, which both induce inflammation when co-incubated with P. gingivalis, F. nucleatum, and A. actinomycetemcomitans [9]. Two strains each of P. gingivalis and P. intermedia were inhibited by K12 and M18 using the simultaneous antagonism method [10]. However, no inhibition of P. gingivalis and P. intermedia was observed when using a deferred antagonism test with S. salivarius M18 [11]. S. salivarius K12 showed antibacterial effects on P. gingivalis, F. nucleatum, and A. actinomycetemcomitans in a liquid co-culture, albeit the concentration of the strain K12 had to be higher than the concentration of the periodontal pathogens [12]. Concentrated supernatants of Streptococcus oralis subspecies dentisani (abbreviated henceforward as S. dentisani) strain 7746, a probiotic primarily explored to inhibit cariogenic mutans streptococci, inhibited the growth of P. intermedia and F. nucleatum and changes in the cell wall of both species were observed [13]. Esteban-Fernández et al. observed a growth reduction rate of 35 to 38% of F. nucleatum and P. gingivalis by supernatants of S. dentisani 7746. They observed cell lysis of F. nucleatum and the formation of vesicles in P. gingivalis. S. dentisani 7746 also inhibited the adherence of F. nucleatum and P. gingivalis to gingival cells. It decreased the production of cytokines after exposure to F. nucleatum and P. gingivalis and, therefore, potentially lowered the inflammation in gingival tissue [14]. On the other hand, Conrads et al. did not observe any significant inhibition of P. gingivalis, P. intermedia and F. nucleatum by S. dentisani 7746 and only a weak inhibition of A. actinomycetemcomitans applying agar diffusion tests [15]. These discrepancies were explained with differences in the inhibitory potential of different (adapted, mutated) subcultures or clones of S. dentisani 7746, but also due to individual test-conditions.

Finally, Lactobacillus reuteri, a common colonizer of the human gastrointestinal tract [16], is used as a probiotic in humans and animals [1719]. The antimicrobial effects of L. reuteri are mainly, but not exclusively, based on a released substance termed reuterin (3-hydroxypropanal, 3-HPA, synonym 3(β) hydroxypropionaldehyde) with a broad-spectrum antimicrobial activity including gram-positive and gram-negative bacteria as well as yeasts, fungi, and even protozoa [20]. It is an intermediate in the metabolism of glycerol to 1,3-propanediol catalyzed by the coenzyme B12-dependent diol dehydrase (oxygen-sensitive and membrane-associated glycerol dehydratase). If not released, 3-HPA is reduced by the (NADH)+H+-dependent-1,3-propanediol-oxydoreductase regenerating NAD+ [2123]. The production is rate-limited because, if overproduced, reuterin is toxic for the producer cell [21]. Schaefer et al. proposed that the antimicrobial effects of reuterin are based on exerting oxidative stress and its interactions with thiol groups [24]. L. reuteri has already been used as an oral probiotic in the treatment of periodontitis [25] and a commercial product is marketed (Sunstar GUM® PERIOBALANCE®, containing Prodentis® L. reuteri strains DSM 17938 and ATCC PTA 5289). In vivo studies were performed to assess the potential as a treatment for periodontal disease. Vivekananda et al. showed a significant reduction of several periodontitis indicators, such as periodontal pocket depth (PPD), gingival index (GI), plaque index (PI), gingival bleeding index (GBI), and clinical attachment level (CAL), after adjunct treatment with L. reuteri. The levels of P. intermedia, P. gingivalis, and A. actinomycetemcomitans were also significantly reduced after the treatment [26]. A study that determined the effects on gingivitis was done by Iniesta et al. with L. reuteri tablets [27]. The authors found no significant reduction of GI & PI compared to the placebo group but, however, they observed a significant reduction of P. intermedia in saliva and P. gingivalis in subgingival samples. In another study, Teughels et al. observed a reduction in pocket depth compared to mechanical treatment (scaling and root planning, SRP) alone. Also, lower numbers of P. gingivalis were detected after treatment with L. reuteri lozenges than with the placebo [25].

The aim of this study was to investigate single and combinatory inhibitory effects of streptococcal strains K12, M18, and 7746, as well as L. reuteri strains ATCC PTA 5289 and DSM 17938 on bacterial species associated with periodontal disease. The probiotics and pathogens were co-incubated in a simple model mimicking the conditions in a periodontal pocket. The resulting cell numbers of the periodontal pathogens and probiotics were determined by a quantitative real-time PCR (qRT-PCR). Genome numbers were analyzed to estimate the inhibitory effects of a specific probiotic strain or combination of probiotic strains on a particular periodontal pathogen. Also and rarely tested, the reverse effect of the pathogens on the growth of the probiotics was investigated. Our null hypothesis was that combinations of strains do not significantly increase the probiotic effect (α = 5%).

Materials and methods

Bacterial cultures

S. salivarius subsp. salivarius K12, Lactobacillus reuteri ATCC PTA 5289, and L. reuteri DSM 17938 were isolated from lozenges of the corresponding marketed products, namely BLIS K12 Throat Guard® (BLIS Technologies Limited, Wellington, New Zealand) and PERIOBALANCE® (Sunstar Europe SA, Switzerland). Based on GenBank genome sequence data available (GU564004.1 in case of ATCC PTA 5289, CP002844.1 in case of DSM 17938, the latter a plasmid-free progeny of strain SD2112) identity of both L. reuteri strains was confirmed by a multidrug ABC transporter gene directed PCR. Streptococcus salivarius subsp. salivarius M18 was kindly provided by R. Lütticken (Aachen, Germany) and S. oralis subsp. dentisani 7746 by A. Mira (Valencia, Spain). All strains (probiotic producers and periodontal test strains from our own collection) were grown on tryptic soy agar with sheep blood (TSASB, Oxoid Germany) for 48 hours at 37°C. Different atmospheric conditions were chosen. All probiotic strains were initially incubated in an atmosphere with 7–8% CO2. The periodontopathogenic strains Porphyromonas gingivalis ATCC 33277, Prevotella intermedia ATCC 25611, and Fusobacterium nucleatum ATCC 25586 were grown anaerobically in a GasPak™ EZ anaerobe pouch system, whereas Aggregatibacter actinomycetemcomitans ATCC 33384 was cultivated in a candle jar (MART Anaerobic jar). Stock suspensions of the probiotic strains with known concentrations of colony-forming units (cfu) were prepared and deep shock frozen (-73°C) in a mixture of 0.9% NaCl (850 μl) and glycerol (150 μl; Merck). The same aliquot used throughout all experiments. Fresh liquid cultures of the pathogenic strains were used to ensure optimal fitness. Colonies from the blood agar plates were used to inoculate 5 ml of a brain-heart-infusion (BHI) broth containing 50 μl of a vitamin K-hemin solution (Becton Dickinson) and incubated either anaerobically or microaerophilic (candle jar in case of A. actinomycetemcomitans) at 37°C for 48 hours.

Growth inhibition of the periodontal pathogens by probiotic strains and vice versa

A standard inhibition assay was developed to assess the inhibitory potential of probiotic strains against the periodontal pathogens. This was achieved by comparing the cell numbers (genome equivalents to be exact) of the pathogens after incubation with or without probiotic strains for 48 hours at 37°C anaerobically (in the case of anaerobes) or in a candle jar (in the case of A. actinomycetemcomitans). A 1:1 mixture of twofold concentrated BHI broth and autoclaved human saliva (donated and pooled 1:1 from two healthy probands) was used as standard growth medium (SGM) for the inhibition assay. Each well of a 96 well cell culture plate (Greiner Bio-One) contained 100 μl of the medium. To assess the effect of glycerol on inhibition, L. reuteri strains were cultivated with (1% w/v) or without glycerol. The stock suspensions of the probiotic strains (see above; except L. reuteri DSM 17938) were used to inoculate the microtiter wells generally reaching a start concentration of 104 cfu per 100 μl and well. Next, pathogenic strains were inoculated by adding 10 μl of the liquid pre-culture. The exact concentration of each inoculum was measured by quantitative real-time PCR. All tests were done in triplicates including the negative control and growth controls (without inhibiting probiotic strains). In order to find the most inhibiting probiotic formula, periodontal pathogens were co-incubated either with a singular probiotic strain or a mixture of two streptococcal or lactobacilli probiotics. However, mixtures of streptococci and lactobacilli were not tested so far to avoid genus-genus interactions and to ease interpretation. The overall concentration of all probiotic cells in a mixture was set to the maximum of 105 cfu per ml. After completing the inhibition assay, the cells were harvested by transferring culture from wells to 1.5 ml Eppendorf microliter tubes. Scraping the biofilm fraction was supported by the pipette tip, which was slightly cut back producing a sharper edge, and by pipetting up and down for dispersion. After centrifugation, the supernatant was discarded and the pellet was resuspended in 100 μl 0.9% NaCl. For washing, the steps centrifugation, discarding of the supernatant, and resuspension of pellet were repeated. Samples were then stored at -73°C until further use. After thawing, the samples were centrifuged and the supernatant discarded. The resulting pellet was treated with 20 μl of a lysozyme & mutanolysin solution (LM, 15 mg lysozyme and 500U mutanolysin in 1ml TE-buffer) for 30 minutes at 37°C lysing bacterial cell walls. DNA was extracted with the QIAmp DNA Mini Kit according to the manufacturer instructions and samples were stored at -20°C.

A qRT-PCR was performed to measure the genome number of both, the pathogenic and the therapeutic probiotic strains, before (inoculum, t = 0) and after (t = 48h) inhibition assays. The DNA of the stock suspensions was serially diluted in tenfold step with nuclease-free water to create a standard curve. The qRT-PCR was performed by the aid of a QuantStudio 3 and in 96 well plate block formats (Thermo Fisher Scientific, Dreieich, Germany). Except for the reciprocal inhibition experiments (limited to duplicates), every pathogen/probiotic combination and controls were run in biological triplicates and the DNA extracted from each well (template) was measured in technical triplicates. The PowerUp™ SYBR™ Green Master Mix (Thermo Fisher Scientific) was used to create a reaction mix. Each well contained 20 μl of the reaction mix with the following components: PowerUp™ SYBR™ Green Master Mix (10 μl), Forward Primer (0.1 μl), Reverse Primer (0.1 μl), nuclease-free water (8.8 μl), Template (1 μl). The concentrations of all primers (synthesized by TIB Molbiol, Berlin, Germany) were 100 μM. DNA of all pathogens and–for inverse experiments—two probiotics (M18, 7746) was amplified and quantified with strain specific primers (Table 1). As a negative control, nuclease-free water was added instead of the template.

Table 1. List of primers used in this study.

Primer Sequence 5’-3’ Amplicon Size Ta [°C] Reference
PF1-F AGAGTTTGATCCTGGCTCAG 54–60 [28]
Aa-R GGCATGCTATTAACACAC 469 bp 54 This study
(combined with PF1)
Fn-R GTCATCGTGCACACAGAATTGCTG 360 bp 60 [29]
(combined with PF1)
Pi-R GTTGCGTGCACTCAAGTCCGCC 660 bp 56 [30]
(combined with PF1)
Pg-R CAATACTCGTATCGCCCGTTATTC 478 bp 59 [31]
(combined with PF1)
SDent-16S-F TGAAGGAGGAGCTTGCTTCTC 59 [15]
SDent-16S-R CAAACAGTTATCATGCAATAACTG 137 bp 59 [15]
Ssal-M18-C4-F2 GAGGTCCGGTTAATGGTTGT 54 This study
Ssal-M18-C4-R CTATGCTGGAGATGACGG 252 bp 54 This study

Ta = annealing temperature of primer.

The qRT-PCR was performed with the following temperature profile: initial denaturation at 95°C (2 min); 40 cycles of: 95°C (15 s), Ta (see Table 1, 15 sec), 72°C (60 s); and final elongation at 72°C (10 min).

Effect of glycerol on periodontal pathogens and on Lactobacillus reuteri

Since glycerol was added as substrate to L. reuteri cultures for reuterin (3-hydroxypropanal) production the sole influence of glycerol on the pathogen growth had to be investigated. The periodontal pathogens were grown in SGM with 1% w/v or without glycerol. The rest of the experiment was performed as described in the previous section and the cell density was measured by qRT-PCR.

L. reuteri ATCC PTA 5289 in combination with the L. reuteri strain DSM 17938 in commercially available lozenges (Sunstar GUM® PERIOBALANCE®) had been used for the treatment of periodontitis by re-establishing a healthy biofilm and combating dysbiosis [25]. Thus, the synergistic effects of these two lactobacilli strains on F. nucleatum were exemplarily investigated. F. nucleatum was chosen as its genome numbers varied the most in testing’s with or without glycerol. The SGM with 1% w/v or without glycerol was inoculated with 104 cfu of F. nucleatum ATCC 25586. Except for the control, the different wells were inoculated with L. reuteri ATCC PTA 5289, L. reuteri DSM 17938 or a 1:1 mixture of both strains reaching a cell density of each probiotic of 105 cfu/ml in a volume of 100 μl and the plates were incubated at 37°C in an anaerobic atmosphere for 48 hours. Anaerobiosis is important, as not only F. nucleatum, but also the reuterin-producing enzyme glycerol dehydratase, is oxygen-sensitive. The DNA of cultures was isolated and the cell density of F. nucleatum again measured by qRT-PCR.

Statistical analysis

Data (bacterial cell or genome counts, respectively) were analyzed using GraphPad Prism (version 8.4.3; San Diego, CA). All data were not normally (not Gaussian) distributed. With non-pairing data, the non-parametric one-way ANOVA (Kruskal-Wallis) test was performed. Generally, the mean rank of columns (culture result) was compared to the mean rank of a control column (culture without probiotic). As the magnitude of genome counts varied over several logs, the uncorrected Dunn’s test was preferred. Correction of multiple comparisons was, however, also performed and differences were reported.

Results

Growth inhibition of the periodontal pathogens by probiotic strains

Without the addition of probiotics, the periodontal pathogens reached genome numbers between 1.14*106 (F. nucleatum) and 1.74*108 (P. gingivalis) after 48h of incubation (Fig 1A–1D). In principle, all probiotic strains inhibited the growth of periodontal pathogens, except L. reuteri in case that no glycerol was added to the medium. However, no probiotic strain or strain-combination–so far tested—was able to reduce the pathogen much below 105 genomes. Glycerol for itself did only slightly, non-significantly, inhibit the growth of test strains (S1 Fig). The individual impact is reported below, firstly for single strains and secondly for strain combinations. The statistical results presented are based on an uncorrected Dunn’s Kruskall Wallis test, thus each comparison stands alone. Correction for multiple comparisons generally doubled the p-value and in case of p < .05 significance was lost.

Fig 1. Inhibition experiments demonstrating the in vitro probiotic potential of Streptococcus salivarius M18 and K12, S. dentisani 7746, and Lactobacillus reuteri ATCC PTA 5289 (plus/minus glycerol) on the growth of four (A-D) different periodontal pathogens.

Fig 1

All experiments were performed in biological triplicates and the DNA measured in technical triplicates. Statistical significance was calculated based on Kruskal-Wallis test. Level of significance *p < .05, **p < .01, ***p < .001. Abbreviations: Pi (Prevotella intermedia), Pg (Porphyromonas gingivalis), Fn (Fusobacterium nucleatum), Aa (Aggregatibacter actinomycetemcomitans), M18 (S. salivarius subsp. salivarius M18), K12 (S. salivarius subsp. salivarius K12), PTA (Lactobacillus reuteri ATCC PTA 5289), 7746 (Streptococcus oralis subsp. dentisani 7746), gly (glycerol).

The P. intermedia ATCC 25611 growth control reached an average genome number of 1.66*106, calculated from three measurements of three independent biological replicates (Fig 1A). The co-incubation with the streptococcal probiotics S. salivarius M18, S. salivarius K12, or S. dentisani 7746 resulted in a lowered growth of P. intermedia (M18 = 4.87*105 genomes; K12 = 2.20*105 genomes; 7746 = 1.41*105 genomes), with the latter reaching significance (p < .05). The inhibitory potential of L. reuteri ATCC PTA 5289 was dependent on the presence of glycerol in the growth medium. The overall strongest inhibition of P. intermedia was observed in co-incubation with strain PTA 5289 when glycerol was added to the medium (2.02*104 genomes, p < .001). In contrast, in the absence of glycerol, P. intermedia was not inhibited at all by PTA 5289 reaching 1.63*106 genomes per well. The effect of glycerol supplementation was highly significant (p < .001).

The mean P. gingivalis ATCC 33277 genome number was 1.74*108 in the growth control (Fig 1B). Both S. salivarius strains, M18 and K12, did inhibit the growth of P. gingivalis but only K12 significantly (M18 = 8.43*107 genomes; K12 = 4.73*107 genomes, p < .05). In contrast S. dentisani 7746 had no inhibitory effect on P. gingivalis, still reaching 1.06*108 genomes. Compared to the control, the genome numbers of P. gingivalis were even higher when grown in the presence of L. reuteri ATCC PTA 5289 without glycerol (2.48*108 genomes). However, the addition of glycerol resulted in a significant reduction of P. gingivalis if co-incubated with the PTA 5289 strain (1.55*107 genomes, p < .01). Again, the effect of glycerol supplementation was highly significant (p < .001).

The mean F. nucleatum ATCC 25586 genome number in the growth control was 1.14*106 after 48h (Fig 1C). The co-incubation with S. dentisani 7746 resulted in a mean cell count of 8.49*105 genomes, slightly below the control. S. salivarius M18 inhibited the growth of F. nucleatum (3.72*105 genomes), but not reaching significance. The co-incubation with S. salivarius K12 had no inhibitory effect (1.19*106 genomes). Co-incubation with L. reuteri ATCC PTA 5289 in a medium with glycerol reduced F. nucleatum significantly (2.29*105 genomes, p < .05) but without glycerol supplementation the pathogen genome number increased more than 5-fold (6.42*106 genomes, p < .001).

Finally, the mean number of A. actinomycetemcomitans ATCC 33384, measured after 48 hours of microaerophilic incubation in the growth control, was 8.17*107 genomes (Fig 1D). The highest inhibition by streptococci was observed when co-incubated with S. dentisani 7746 (drop to 3.82*106 genomes, p < .01). Here and in contrast to the obligate anaerobic test strains, L. reuteri ATCC PTA 5289 resulted in a non-significant reduction of A. actinomycetemcomitans, even after glycerol supplementation, possibly because of the oxygen-sensitive nature of the glycerol dehydratase.

Next, the effect of mixtures of the oral streptococcal probiotics S. salivarius M18, S. salivarius K12, and S. dentisani 7746 on the growth of the periodontal pathogens was investigated to assess synergistic, additive, or dilutive (antagonistic) inhibitory effects compared to addition of single probiotic strains (Fig 1A–1D, last three columns).

A strong inhibition of P. intermedia was observed when co-incubated with a mixture of S. salivarius K12 and S. dentisani 7746 (9.90*104 genomes, p < .01). In comparison to the inhibitory effects of the two single probiotics (2.20*105 in case of K12, p = .08 and 1.41*105 in the case of 7746, p < .05), the significance was higher indicating a synergistic effect. A mixture of both S. salivarius strains (K12 and M18) or of S. salivarius M18 and S. dentisani 7746 also inhibited the growth of P. intermedia but with no significant additive or synergistic effect.

All mixtures of streptococcal probiotics lowered the genome numbers of P. gingivalis compared to the growth control after 48h (Fig 1B). However, mixing the best streptococcal probiotic, namely K12, with either M18 or 7746, showed an antagonistic effect. As a result, no mixture reached the inhibitory and significant power of K12 applied as a single probiotic.

Only two of the three mixtures inhibited the growth of F. nucleatum (Fig 1C). The best inhibitor was the mixture of both S. salivarius strains M18 and K12 reducing F. nucleatum down to 4.91*105 genomes, followed by the mixture of M18 and S. dentisani 7746 reducing to 4.83*105 genomes. Both co-inhibitors, however, diluted the probiotic effect of sole M18 which was 3.72*105 genomes for comparison. Interestingly, the mixture of K12 & 7746 slightly enhanced the growth of F. nucleatum in comparison to the control (1.24*106 genomes versus 1.14*106 genomes), but this growth stimulation was not significant.

Finally, every mixture of the streptococcal probiotics inhibited the growth of A. actinomycetemcomitans significantly (Fig 1D). The overall lowest number was observed when co-incubated with a mixture of S. salivarius M18 & S. dentisani 7746 (3.01*105 genomes), indicating a significant synergistic effect (p < .001). The increase of inhibition between applying individual versus mixed probiotics was also significant (p < .01). The mixture of both S. salivarius strains, in an additive manner, significantly (p < .05) reduced A. actinomycetemcomitans down to a mean of 5.90*106 genomes. Worth mentioning, M18 compensated or even over-compensated the somewhat weak inhibitory effect of K12 here. In contrast, the mixture K12 / 7746 resulted in 4.44*106 A. actinomycetemcomitans genomes, indicating that the 7746-inhibitory effect was slightly diluted by K12.

All inhibitions were also calculated as percentages (Table 2) and graphically visualized in S2 Fig. Clearly, L. reuteri ATCC PTA 5289 plus glycerol, as a single probiotic strain, had the best anti-pathogen effect. However, with depletion of glycerol, as essential for reuterin production, the inhibition can turn into a growth spurt (negative inhibition marked in bold in Table 2 and under the 0-line in S2 Fig).

Table 2. Inhibition (in %) of four different periodontopathogenic species by four oral probiotic strains and single or in different combinations.

Ss M18 Ss K12 Sd 7746 Lr Lr M18 & K12 M18 & 7746 K12 & 7746
PTA plus gly PTA minus gly
Prevotella intermedia 70.7 87.4 91.7 98.8 4.0 88.0 81.3 93.9
Porphyromonas gingivalis 55.2 73.3 36.3 92.1 -33.6 60.5 48.5 65.6
Fusobacterium nucleatum 64.1 -9.04 22.8 79.6 -533 57.6 57.2 -20.1
Aggregatibacter actinomycetemcomitans 91.7 59.9 95.1 80.7 27.8 93.7 99.4 94.9
Mean 70.44 52.90 61.47 87.82 -133.9 74.94 71.61 58.55
SD* 13.47 37.06 32.32 8.01 231.84 16.05 20.06 46.89

*As the results of four different species are integrated the standard deviation (SD) is naturally high. Abbreviations: M18 (S. salivarius subsp. salivarius M18), K12 (S. salivarius subsp. salivarius K12), PTA (Lactobacillus reuteri ATCC PTA 5289), 7746 (Streptococcus oralis subsp. dentisani 7746), gly (glycerol).

Growth inhibition of streptococcal probiotics by periodontal pathogens

Since the interaction between probiotic bacteria and periodontal pathogens is not one-sided, the effects of pathogens on the growth of S. salivarius M18 & S. dentisani 7746 were exemplarily assessed again by qRT-PCR. The resulting streptococcal genome numbers were compared to the probiotic growth control without pathogen (Fig 2A and 2B).

Fig 2. Reciprocal inhibition experiments demonstrating the growth-stimulating effect of four periodontopathogenic bacteria (Prevotella intermedia Pi, Aggregatibacter actinomycetemcomitans Aa, Porphyromonas gingivalis Pg, Fusobacterium nucleatum Fn) on Streptococcus salivarius M18 (A) and S. dentisani 7746 (B).

Fig 2

All experiments were performed in biological duplicates and the DNA measured in technical triplicates. Level of significance *p < .05, **p < .01, ***p < .001. Abbreviations: Pi (Prevotella intermedia), Pg (Porphyromonas gingivalis), Fn (Fusobacterium nucleatum), Aa (Aggregatibacter actinomycetemcomitans), K12 (S. salivarius subsp. salivarius K12).

The co-incubation with every periodontopathogenic strain used in this study enhanced the growth of S. salivarius M18 (Fig 2A), but only significantly in the case of P. gingivalis (p < .05). In contrast, without any gram-negative target organism, the mean genome number was 3.56 *105. If co-incubated with P. gingivalis it reached 1.78*106 genomes or with P. intermedia it reached 1.54*106 genomes. The lowest growth-stimulation was detected when incubated with A. actinomycetemcomitans (9.05*105 genomes).

The addition of another streptococcal probiotic (either S. salivarius K12 or S. dentisani 7746) to S. salivarius M18 plus any periodontal pathogen tested, generally (in 7 out of 8 cases) resulted in a further growth spurt of S. salivarius M18. The exception here was the mixture of S. salivarius M18 & K12 in the case of P. intermedia, which resulted in a lower genome number (decrease from 1.54*106 to 5.19*105 genomes) compared to the reference culture.

The genome numbers of S. dentisani 7746 were again higher compared to the growth control (6.25*106) when co-incubated with either P. gingivalis (1.40*107) or A. actinomycetemcomitans (8.34*106) (Fig 2B). The co-incubation with F. nucleatum or P. intermedia slightly lowered the genome number of S. dentisani 7746 (4.86*106 and 4.54*106). Overall, the periodontal pathogens used in this study had little, non-significant effects on the growth of S. dentisani 7746. With other words, the gram-negative targets did neither inhibit nor stimulate the growth of this probiotic. Interestingly, the overall genome numbers of 7746 were significantly (p < .05-.01) or by trend (p≤.17) lowered when additionally co-incubated with either S. salivarius M18 or K12, probably demonstrating a risk for antagonistic effects of other streptococcal strains.

Effect of glycerol on periodontal pathogens and on Lactobacillus reuteri

As outlined above, glycerol had an essential influence on the inhibitory effect of L. reuteri ATCC PTA 5289. For one, the inhibition of the three obligate anaerobic periodontal pathogens was highly significantly (p < .001) stronger when the medium was supplemented with 1% w/v glycerol. As an adverse effect, the growth of P. gingivalis (by 33.6%) and F. nucleatum (by 533%) was even stimulated when incubated with strain PTA 5289 in a glycerol-free culture (Table 2). Therefore, the sole effects of glycerol on the growth of periodontal pathogens had to be identified (S1 Fig). In principle, F. nucleatum, P. intermedia, P. gingivalis and A. actinomycetemcomitans did grow without (1.49*106; 1.14*107; 1.89*108; and 7.44*106 respectively) or with (1.25*106; 1.45*106; 1.04*108; and 6.08*105 respectively) 1% w/v glycerol. Although the numbers of periodontal pathogens were reduced by glycerol, the difference did not reach significance (S1 Fig). Taken all results together, the chemical effect of the essential glycerol has to be subtracted from the probiotic effect of Lactobacillus reuteri in glycerol-rich cultures.

Since strain L. reuteri ATCC PTA 5289 was isolated from lozenges (Sunstar GUM® PERIOBALANCE®), that also contained another strain, L. reuteri DSM 17938, the synergistic effect of both strains was examined, again with and without the addition of glycerol (Fig 3). These tests were exemplarily performed with F. nucleatum ATCC 25586, as it showed the most pronounced influence of glycerol. Every well was inoculated with 6.2*105 F. nucleatum cells. After 48 hours, the mean genome-numbers of the growth control without glycerol (6.05*106) were higher than with glycerol (4.90*106), which was correspondent to the results of the afore-mentioned experiment. The co-incubation with strain PTA 5289 did significantly (p < .05) lower the number of F. nucleatum down to 9.16*105 genomes when the medium contained glycerol. However, after subtracting the sole inhibitory effect of glycerol, significance was just missed (p = .0578). Without glycerol, strain PTA 5289 enhanced F. nucleatum growth reaching 8.60*106 genomes. A reason for the upregulation in absence of glycerol could be catabolism gene-upregulation in F. nucleatum after coaggregation, as recently found in a co-culture with Streptococcus gordonii [32]. Interestingly, the sole incubation with strain DSM 17938 reduced F. nucleatum with and without glycerol (1.53*106 and 1.78*106 genomes, respectively), pointing on an inhibitory mechanism independent of the glycerol-depending reuterin-effect. Finally, a combination of both L. reuteri strains ATCC PTA 5289 and DSM 17938 inhibited F. nucleatum, reducing the effect of glycerol to a non-significant level (3.69*106 versus 1.04*106 genomes, with p = 0.1722). Inhibition of the probiotic strain mixture, however, reached the same magnitude as strain PTA 5289 alone. Thus, strain DSM 17938 seems to act as a helper strain being especially supportive in case of glycerol-shortage or absence.

Fig 3. Inhibition experiments demonstrating the in vitro probiotic potential of Lactobacillus reuteri ATCC PTA 5289, DSM 17938, and a combination of both (minus/plus glycerol) on the growth of F. nucleatum ATCC 25586.

Fig 3

Level of significance *p < .05. Abbreviations: Fn (Fusobacterium nucleatum), PTA (Lactobacillus reuteri ATCC PTA 5289), DSM (Lactobacillus reuteri DSM 17938), gly (glycerol).

Discussion

With a rising skepticism to use antibiotics in the treatment of chronic inflammatory diseases, such as periodontal diseases, alternatives including phage-therapy or probiotic approaches are gaining more attention. Several probiotics to re-establish a healthy, eubiotic oral microbiome have been isolated and explored. Among them are Firmicutes, including streptococci and lactobacilli, the most promising candidates. Recently, we have published about the in vitro anti-cariogenic potential of Streptococcus oralis subspecies dentisani 7746 in comparison to other probiotic strains or combinations of strains [15]. Here, we explored the in vitro anti-periodontitis potential of this species in comparison to Streptococcus salivarius subsp. salivarius M18 and K12, as well as Lactobacillus reuteri strains ATCC PTA 5289 and DSM 17938. The inhibitory effect was tested on four of the most prominent and cultivable periodontal pathogens, namely Aggregatibacter actinomycetemcomitans, Fusobacterium nucleatum, Prevotella intermedia, and the key pathogen Porphyromonas gingivalis. As isolated from different research groups, so far their probiotic activity was tested only individually and applying different antagonist-tests, making the direct comparison of probiotic power difficult. Here for the first time, strains 7746, M18, K12 (separately and in combination), and PTA 5289 (plus/minus DSM 17938) were tested in parallel and under exactly the same conditions (BHI: saliva 1: 1 medium, same atmospheric conditions, duration of 48h). Some combinations, such as mixtures of streptococcal and lactobacilli strains or mixtures of more than two strains, were excluded, keeping the culture conditions more controlled and easing the interpretation. In future experiments, more interactions based on the results here, should be tested.

Regarding the mostly bacteriocin-driven inhibitory potential of streptococcal strain mixtures in comparison to individual strains, it can be concluded from our results that additive or dilutive (antagonistic) inhibitory effects are more likely to occur than synergistic effects. Our null hypothesis, that combinations of strains do not significantly increase their probiotic effects, was approved. However, there were at least two exceptions found. A strong inhibitory effect of P. intermedia was observed when co-incubated with a mixture of S. salivarius K12 and S. dentisani 7746. In comparison to the inhibitory effects of the two single probiotics, the significance was higher, indicating a synergistic effect. Furthermore, every mixture of the streptococcal probiotics improved A. actinomycetemcomitans growth-inhibition significantly. The overall lowest number was observed when co-incubated with a mixture of S. salivarius M18 and S. dentisani 7746, again indicating a concerted, synergistic effect. The increase of inhibition between applying individual versus mixed probiotics was also significant (p < .01). In contrast, for P. gingivalis, no mixture reached the inhibitory and significant power of K12 and for F. nucleatum both co-inhibitors diluted the probiotic effect of sole M18. In conclusion here, a concerted probiotic effect of otherwise individually explored streptococcal strains is possible, at least to target some pathogens. It is known that S. dentisani 7746 produces about ten different bacteriocins [15]. Combined with the plasmid-encoded salivaricin-variants A2, B, 9, and MPS produced by K12 and M18 [33], as well as bacteriocin immunity factors, a concerted activity directed against the pathogens is needed avoiding a friendly fire of against the co-producer.

As the interaction pathogen-probiotic is bidirectional, we tested the influence of pathogens on the growth of S. salivarius M18 & S. dentisani 7746 exemplarily. The co-incubation with every periodontopathogenic strain stimulated the growth of S. salivarius M18, significantly in the case of P. gingivalis. This was observed for the first time here. A possible explanation could be that a dying and disintegrating target provides more nutrients and supplements for the producer. In contrast, the co-incubation with pathogens had only non-significant effects on the growth of S. dentisani 7746.

Regarding the inhibitory potential of L. reuteri strains or strain mixtures on F. nucleatum, clearly pure L. reuteri ATCC PTA 5289 had the best anti-pathogen effect. By way of exception, A. actinomycetemcomitans was more reuterin-resistant and M18-susceptible, which had been reported before for culture supernatants of these probiotics [34]. Critically, with depletion of the essential glycerol the inhibition can turn into a growth spurt. The combination with L. reuteri DSM 17938, a putative immunomodulatory strain [35, 36], seems also to reduce the glycerol-dependency, an additional synergistic effect for the Sunstar GUM® PERIOBALANCE® Prodentis® mixture, overlooked so far. There is much to discuss about the reuterin (3-HPA) production of these strains. Many of the essential parameters are not taken into account when testing or applying L. reuteri, especially in clinical studies. It must be emphasized that 3-HPA production by the enzyme glycerol dehydratase is at least dependent on i) presence of substrate glycerol, ii) anaerobiosis as the enzyme is oxygen-sensitive, and iii) presence of traces of B12 [2124, 37]. If one of these three conditions is not fulfilled, the probiotic activity will remain weak. On the other hand, if all conditions are perfectly concerted, the pathogen inhibition can be enhanced. In our experiments, we fulfilled these conditions in all wells (measurements) by adding 1% glycerol (versus control) and most plates were incubated anaerobically in a Brain-Heart-Infusion-broth with natural saliva containing B12-traces. However, the reduced reuterin-activity after microaerophilic incubation with A. actinomycetemcomitans could already be an indicator for glycerol dehydratase inhibition by traces of oxygen. Fortunately, B12 is heat-stable and the activity is not reduced much by autoclavation [38]. However, the exact B12-concentration was not determined in our experiment and we did not test whether addition of B12 would have further stimulated the reuterin-effect.

Underrating these conditions could be one reason why clinical studies on the anti-periodontitis activity revealed very different results, supporting [25, 3943], intermediate [44, 45], or not-supporting [4648] its application, and recently leading to rejection of a health claim [10]. This could further implicate that reuterin production needs a deep, anaerobic pocket and might thus not be helpful in mild cases. However, as many highly oxygen-sensitive, obligate anaerobic pathogens are even present in shallowed periodontal pockets or in the healthy sulcus, it seems that—wherever anaerobic pathogens are able to multiply—reuterin will be produced as oxygen-concentration is locally low. As reported in a process engineering study, for the efficient reuterin production, the presence of a certain glycerol concentration is critical, as enough substance should be produced but too much antimicrobial reuterin is toxic for the producer [22]. Translated for clinical studies and applications, an optimal glycerol concentration should be ensured during probiotic therapy, at least initially or–after the strain is established in the mouth—in phases of inflammation. To our knowledge this condition was never considered enough in any clinical study. The probiotic lozenges were given as produced and marketed. And the same might be true for B12-supplementation, a condition easily to fulfill as this vitamin is cheap and stable. So far, PERIOBALANCE® does contain–besides bacteria and peppermint flavor—an isomalt cryoprotectant, emulsifier, sweetener, and a few percentages of hydrogenated palm oil. As least palm oil is a source of triacylglycerole which can be degraded by bacteria releasing glycerol. Other glycerol-sources are blood and tissue in the inflamed gingiva. However, it might be helpful to measure glycerol in situ and–if suboptimal for reuterin production–to further supplement during probiotic therapy, ideally combined with B12.

Besides the direct antimicrobial activity subjected in our study, there are three additional central questions to answer when applying (concerted) probiotics.

Firstly, could lactic acid bacteria be cariogenic? The probiotics discussed here are acidogenic and aciduric and often found to be associated with caries. And while it can be effective in clearing periodontal bacteria in vitro or even in vivo, other impacts on the overall oral ecology and caries-etiology are important to consider [15, 49].

Secondly, is a reduction by 2 or 3 log-steps, usually measured by in vitro studies (including the present) enough to keep a chronic inflammatory reaction under control in vivo? This can only be answered in non-commercially biased, randomized, double blinded, placebo-controlled, and prognostic clinical studies with many subjects. At least for the application of L. reuteri such studies do exist but show, as outlined above, ambivalent results. A reason for hope here is, comparable to experience with antibiotics, that a reduction by only a few log-steps still gives the immune system the chance to take over, turning a vicious circle into an upwards spiral. The addition of immunostimulating strains might further improve the probiotic concert.

Thirdly, how long will the probiotic strain or a combination persist in situ and thus act at a particular oral side? For S. salivarius K12, in a former study, we found persistence on different mucosae for as long as three weeks, but with steadily decreasing numbers after day eight [7]. Other studies addressing this issue are very rare, as usually only the abundance before and shortly after end of treatment—but not the persistence—is measured. For instance, persistence of S. dentisani 7746 at mucosal membranes was never addressed before. In a study by Burton et al. the oral cavity “persistence” of S. salivarius M18 was investigated in 75 subjects receiving four different doses for 28 days [10]. The last testing for M18 was done as usual after the last administration, challenging the measurability of true persistence. The authors conclude that the percentage of subjects having the M18 strain detected in their saliva first increased with the dose, but after day seven slowly dropped down [10]. For gut flora, the clearance of probiotics is better studied. In rats it was shown that, from five different probiotic strains (Lactobacillus acidophilus LA742, Lactobacillus rhamnosus L2H, Bifidobacterium lactis HN019 and the oral probiotic S. salivarius K12) B. lactis and L. rhamnosus persisted seven days, but the oral K12 was already non-detectable at day three [50]. The latter result could be due to the “wrong” intestinal niche. Vice versa, intestinal L. reuteri might have reduced persistence in the oral cavity. Romani Vestman et al. conducted a randomized, double-blinded, placebo-controlled study with a 6-week PERIOBALANCE® intervention period and 3- and 6-month follow-up, investigating the effects on regrowth of mutans streptococci after full-mouth disinfection. L. reuteri was frequently detected by culture during the intervention period but in only three test group subjects (10%) at follow-ups and in low numbers [51]. Indeed, the persistence of intestinal L. reuteri in the oral niche seems to be weak. As a matter of fact, clearance of niche-foreign bacteria is a basic defense principle in natural microbial ecosystems and this is why we call such intruders “transient”. A concerted probiotic activity should therefore, besides pathogen inhibition, also consider immunostimulation for pathogen clearance (e.g. by addition of L. reuteri DSM 17938) and niche-persistence (e.g. by addition of true residential strains linking others).

In conclusion, investigating the beneficial effects of probiotic bacteria to maintain or re-establish oral health is a very important topic. The full potential for probiotic treatment is by far not utilized yet. Especially, further exploring the concerted force on three levels, pathogen-inhibition, immunostimulation, and niche-persistence, together with the application of oral prebiotics and essential supplements and conditions, is desirable.

Supporting information

S1 Fig. Influence of 1% (w/v) glycerol on the growth of four periodontopathogenic bacteria.

Abbreviations: Pi (Prevotella intermedia), Pg (Porphyromonas gingivalis), Fn (Fusobacterium nucleatum), Aa (Aggregatibacter actinomycetemcomitans), gly (glycerol).

(TIF)

S2 Fig. Overall in vitro percent inhibition of periodontal pathogens by probiotic strains S. salivarius M18 and K12, S. dentisani 7746, and L. reuteri ATCC PTA 5289.

In a culture without glycerol, L. reuteri caused a growth spurt (negative inhibition) of some pathogens. For data see Table 2. Abbreviations: M18 (S. salivarius subsp. salivarius M18), K12 (S. salivarius subsp. salivarius K12), PTA (Lactobacillus reuteri ATCC PTA 5289), 7746 (Streptococcus oralis subsp. dentisani 7746), gly (glycerol).

(TIF)

Acknowledgments

We would like to thank Mrs. Beate Melzer-Krick for her excellent technical assistant and Rudolf Lütticken for providing strain M18 and editing the manuscript.

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

The authors received no specific funding for this work.

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Decision Letter 0

Abdelwahab Omri

5 Feb 2021

PONE-D-20-35741

A concerted probiotic activity to inhibit periodontitis-associated bacteria

PLOS ONE

Dear Dr. Georg Conrads,

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Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

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Reviewer #3: Yes

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Reviewer #1: This is an interesting paper that addresses an important topic, the inhibition of periodontal pathogens by commensals and probiotics. While the methodology is fairly straightforward, the novelty of work lies in the testing of combinations of organisms and examining the impact of the pathogenic organisms on the commensals. The dependence of L. reuteri on glycerol for an antagonistic effect is also an important advance.

Specific comments

1. Discussion of non-statistically significant results should be limited and more cautious. For example, its not clear that the inhibitory potential of K12 was diluted by M18 (line 262), when none of the conditions were statistically significant.

2. There is no need to repeat numbers in the text which are presented in the figures and table.

3. Line 112-113. The authors should state a biological hypothesis rather than a statistical one.

4. Introduction. the meaning of 'a common abbreviation used' is unclear.

Reviewer #2: Overview: The manuscript “A concerted probiotic activity to inhibit periodontitis-associated bacteria” describes a straightforward approach to characterize effects of several probiotic bacteria on periodontal pathogenic bacteria in vitro. The authors performed co-cultures of strains, with single and double strains of probiotics cultured with each pathogen, then analyzed growth of each strain after 48 h by measuring abundance of genomic DNA via qRT-PCR. In general, this was an interesting study that certainly has some applications in dental hygiene. I have a few minor comments and one major comment about the manuscript and research.

Minor comments:

1. The manuscript is well written, and English is very good. However, a careful review by a native English speaker would help to polish the language.

2. Lines 112-113: “Our null hypothesis was that there is no significant difference of pure culture versus co-culture.” For clarity, what difference are you referring to? It would also be nice if you could come back to this hypothesis at the end of the paper and state whether or not it was confirmed.

3. Lines 248-249: “without glycerol supplementation the pathogen cell number increased more than 5-fold…” Why would this happen? Can you provide some more details as to why the pathogens would grow higher in the PTA – glycerol condition than on their own?

4. Table 2: The order of the Lr PTA w/o gly and Lr PTA with gly is swapped from Fig. 1. That was a bit confusing to me for a second. I recommend swapping the two columns to be consistent with the order in Fig. 1.

5. Figure 2- I’m not sure if this is necessary. It may be better placed in the Supplementary Info, as it is mostly a repeat of the data in Table 2.

6. Lines 320-321: “Thus, perfect for the application as a probiotic…” This sentence is rather confusing and could benefit from being re-worded to improve clarity.

Major issues:

1. Lines 117-119. The authors isolated three different strains of bacteria from commercially available lozenges. However, there is no description of how or whether the isolates were characterized and confirmed. Were the isolates verified to be the strains they report? If so, please explain how the validation performed. If not, the strains should be verified.

Reviewer #3: This study assessed the probiotic effects of S. salivarius strains M18 and K12, S. oralis subsp. dentisani 7746, or L. reuteri ATCC PTA 5289 (or a combination thereof) on periodontal pathogens, P. gingivalis ATCC33277, F. nucleatum ATCC 25586, P. intermedia ATCC 25611 and A. actinomycetemcomitans ATCC 33384. L. reuteri glycerol-dependent antagonistic properties (production of reuterin) was also examined. The study also investigated the impact of the periopathogens on the growth of the probiotic strains. All analysis was done via qRT-PCR. Overall, the paper is straight forward and presents relatively new information. Experiments performed also appear sound and appropriately controlled. There are several aspects of the paper that could be improved though. The resolution of the figures should be improved; they appear to be of poor quality. Figure 2 does not present any new data so should be omitted. The discussion section also lacks some important and relevant information. While it states that L. reuteri had the “best anti-pathogen effect” and discusses in detail what aspects could be improved as a probiotic therapy, it is also worth mentioning that Lactobacilli can be acidogenic and aciduric in certain conditions and are often found to be associated with caries. And while it can be effective in clearing periodontal bacteria in vitro, the impact it can have to the overall oral ecology is important to note. Additionally, the discussion section specifically could be improved if several grammar issues can be corrected with further proofreading/editing (some examples are listed below).

1. Line 139 and throughout the paper: growth inhibition was assessed quantifying bacterial genomes via qPCR. Hence, phrases like“comparing cell numbers” or referring to the detected bacterial genome as cell numbers is inaccurate (since CFUs weren’t done to actually count cell numbers).

2. Line 140: were biofilms grown under anaerobic conditions? If so, please specify here. It is mentioned in the discussion section/line 433 but not specified here.

3. Line 141: The growth condition authors used/BHI both and autoclaved human saliva. Please include a reference or explain why this condition was selected.

4. Line 154: Collection of biofilms. The author states cells were simply “harvested by transferring culture from wells”. Was any scraping of the biofilm with subsequent sonication step involved?

5. It could help readers follow the results better if figures in Figure 1 are labeled A-D, and referenced in text/results section

6. Line 259: Authors state P. intermedia inhibition is enhanced via a synergistic effect of K12+7746, compared to single species. Is there a significant decrease of P.intermedius genome in K12+7746 vs. K12 or 7746 only?

7. Line 259 and on: Instead of organizing the results section this way, it would help if all the findings of each graph within Figure 1 is written together (instead of splitting single probiotic species impact on specific periodontal bacteria and then going back later to stating the results on mixed-species impact on that periodontal bacteria)

8. Figure 2 presents nothing new. Table 2 is fine the way it is but Figure 2 does not really add to the manuscript. Figure 2 should be removed.

9. Line 321: “producer-activation” ? Are authors referring more detection of genome as “activation”? Sentence should be rewritten. Referring it to as “persistence” of that probiotic strain seems more accurate.

10. Line 344-345: Please add “respectively” after the numbers in the parentheses

11. Line 345: “However” should be changed to “Although” or “While” and omit “but”

12. Figure 4: Title of figure should be F. nucleatum, as the format in Figure 1, since the bacterial genome reported are of F. nucleatum when grown with two different strains of L. reuteri.

13. Line 358: remove “Anyway” and also throughout the manuscript

14. Line 375: please change “gain more attention” to “are gaining more attention”

15. Line 391: Omit however

16. Line 411-413: Just simply state it as a possible explanation (take out “an explanation for this,…cannot be given”).

17. Line 435: Should be “the activity is not reduced much by autoclaving”

18. Line 435-436: Change to “..was not determined in our experiment and we did not test whether addition of B12 would have further..”

19. Line 445: “Learning from biotechnology”…? As reported in the literature…?

**********

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Reviewer #2: No

Reviewer #3: No

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PLoS One. 2021 Mar 5;16(3):e0248308. doi: 10.1371/journal.pone.0248308.r002

Author response to Decision Letter 0


22 Feb 2021

Dear Editor,

Thank you for your letter dated February 5th. 2021 summarizing the reviewer’s comments. We have carefully reviewed the comments and have revised the manuscript accordingly. Our responses are given in a point-by-point manner below.

We have updated the PLOS ONE's style requirements.

We deleted the paragraph referring to “data not shown”: From “Because of a slight cross-reactivity between K12- (data therefore not shown)…” until …the streptococcal probiotics tested reduce the periodontal key-pathogen P. gingivalis and may even benefit from its killing.”

We have checked the statistic again.

We hope the revised version is now suitable for publication and are looking forward to hearing from you.

Reviewer #1: This is an interesting paper that addresses an important topic, the inhibition of periodontal pathogens by commensals and probiotics. While the methodology is fairly straightforward, the novelty of work lies in the testing of combinations of organisms and examining the impact of the pathogenic organisms on the commensals. The dependence of L. reuteri on glycerol for an antagonistic effect is also an important advance.

Authors: Thank you very much for your supportive words.

Specific comments

1. Discussion of non-statistically significant results should be limited and more cautious. For example, its not clear that the inhibitory potential of K12 was diluted by M18 (line 262), when none of the conditions were statistically significant.

Authors: You are right that this might be an over-interpretation. We changed the text accordingly, now reading:

Lines 262ff: A mixture of both S. salivarius strains (K12 and M18) or of S. salivarius M18 and S. dentisani 7746 also inhibited the growth of P. intermedia, but with no significant additive or synergistic effect.

2. There is no need to repeat numbers in the text which are presented in the figures and table.

Authors: We disagree regarding numbers in figures. The exact count is hard to deduce from a figure but the exact number is still important for direct comparison in the text. Regarding tables, we now avoid repetition, except for a few very important data. Thank you.

3. Line 112-113. The authors should state a biological hypothesis rather than a statistical one.

Authors: We like this deep-minded comment and our suggestion is shown below and integrated at the end of introduction.

Lines 112-113: Our null hypothesis was that combinations of strains do not significantly increase the probiotic effect (� = 5%).

4. Introduction. the meaning of 'a common abbreviation used' is unclear.

Authors: We agree and have found an alternative way to show the correct taxonomy without constantly using the very long, bulky (subspecies level) names.

Line 60: Streptococcus salivarius subspecies salivarius (abbreviated henceforward as S. salivarius) strains K12…

Line 69: Streptococcus oralis subspecies dentisani (abbreviated henceforward as S. dentisani) strain 7746…

------------------------------------------------------------------------------------------------------------------------------------

Reviewer #2: Overview: The manuscript “A concerted probiotic activity to inhibit periodontitis-associated bacteria” describes a straightforward approach to characterize effects of several probiotic bacteria on periodontal pathogenic bacteria in vitro. The authors performed co-cultures of strains, with single and double strains of probiotics cultured with each pathogen, then analyzed growth of each strain after 48 h by measuring abundance of genomic DNA via qRT-PCR. In general, this was an interesting study that certainly has some applications in dental hygiene. I have a few minor comments and one major comment about the manuscript and research.

Authors: Thank you very much for your supportive words.

Minor comments:

1. The manuscript is well written, and English is very good. However, a careful review by a native English speaker would help to polish the language.

Authors: We have polished the language and Reviewer #3 helped to improve the grammar.

2. Lines 112-113: “Our null hypothesis was that there is no significant difference of pure culture versus co-culture.” For clarity, what difference are you referring to? It would also be nice if you could come back to this hypothesis at the end of the paper and state whether or not it was confirmed.

Authors: Thank you for this suggestion. We have modified the 0-hypothesis and have added a sentence to the discussion:

Introduction: Lines 112-113: Our null hypothesis was that combinations of strains do not significantly increase the probiotic effect (� = 5%).

Discussion: Lines 391ff: Our null hypothesis, that combinations of strains do not significantly increase the probiotic effect, was approved. However, there were at least two exceptions found…

3. Lines 248-249: “without glycerol supplementation the pathogen cell number increased more than 5-fold…” Why would this happen? Can you provide some more details as to why the pathogens would grow higher in the PTA – glycerol condition than on their own?

Authors: This is a reasonable and central question. Knowledge about growth conditions and metabolism of Fusobacterium nucleatum might help to answer this question. Searching for this, we came through an article of Rogers et al. (Marsh-group) from 1991 (Oral Microbiol Immunol. 1991Aug;6(4):250-5.doi: 10.1111/j.1399-302x.1991.tb00486.x.). Firstly, we considered F. nucleatum as acidophilic and thus probably stimulated by lactic acid bacteria. Indeed, its pH-range is between pH 7.7 and as low as 5.8. But as pH 7.4 was found to be the optimum, acid tolerance cannot be the answer. Next, we searched for effects by coaggregation. F. nucleatum is considered as a ‘bridge‐organism’ that facilitates colonization of other bacteria by co-aggregation‐mediated mechanisms. Sharma et al. 2004 (https://doi.org/10.1111/j.1399-302X.2004.00175.x), investigating Tannerella forsythia-F. nucleatum co-cultures, stated that “synergistic biofilm formation between the two species was dependent on cell–cell contact and soluble components of the bacteria were not required”. Later, more information came from a study of Mutha et al. 2018 (Mol Oral Micro). They found that in a S. gordonii-F. nucleatum co-culture -by comparison with monocultures- 16 genes were (up-)regulated in F. nucleatum and even 119 genes were regulated in S. gordonii. In both species, genes involved in amino acid and carbohydrate metabolism were strongly affected by coaggregation. In particular, one particular operon in F. nucleatum, encoding sialic acid uptake and catabolism, was up-regulated 2- to 5-fold following coaggregation. We do not yet have a proof in our L. reuteri-F. nucleatum co-culture but a comparable up-regulation is our hypothesis.

We added the following text plus the Mutha et al 2018 reference: A reason for the upregulation in absence of glycerol could be catabolism gene-upregulation in F. nucleatum after coaggregation, as recently found in a co-culture with Streptococcus gordonii.

4. Table 2: The order of the Lr PTA w/o gly and Lr PTA with gly is swapped from Fig. 1. That was a bit confusing to me for a second. I recommend swapping the two columns to be consistent with the order in Fig. 1.

Authors: We have edited Table 2. We also optimized consistency of order and naming throughout the text, Table and Figures.

5. Figure 2- I’m not sure if this is necessary. It may be better placed in the Supplementary Info, as it is mostly a repeat of the data in Table 2.

Authors: Figure 2 is important as presenting relative numbers and for all four pathogens. But data are indeed repeated in Table 2. As a compromise, we kept it as Supplementary S2 Figure.

6. Lines 320-321: “Thus, perfect for the application as a probiotic…” This sentence is rather confusing and could benefit from being re-worded to improve clarity.

Authors: We decided to delete this sentence. It was criticized by another reviewer too and it contains interpretation not appropriate as Results. Thank you.

Major issues:

1. Lines 117-119. The authors isolated three different strains of bacteria from commercially available lozenges. However, there is no description of how or whether the isolates were characterized and confirmed. Were the isolates verified to be the strains they report? If so, please explain how the validation performed. If not, the strains should be verified.

Authors: A very good question. We invested some time to ensure the identity of strains isolated from the products (a good source otherwise, because this is exactly what the consumers take). We see our efforts reflected in this question that we can answer confidentially: This task was easy in the case of K12 as this is the only strain in product BLIS K12. Furthermore, we successfully performed bacteriocin-gene-directed-PCR-experiments with this strain before (see Horz et al. 2007). However, because of two L. reuteri strains this task was more sophisticated in the Sunstar product. Fortunately, the genome sequences of both strains were available. We do not want to expand the M&M section too much, but we added one sentence for clarification:

Lines 120ff: Based on GenBank genome sequence data available (GU564004.1 in case of ATCC PTA 5289, CP002844.1 in case of DSM 17938, the latter a plasmid-free progeny of strain SD2112) identity of both L. reuteri strains was confirmed by a multidrug ABC transporter gene directed PCR.

We can provide primer data if needed.

-------------------------------------------------------------------------------------------------------------

Reviewer #3: This study assessed the probiotic effects of S. salivarius strains M18 and K12, S. oralis subsp. dentisani 7746, or L. reuteri ATCC PTA 5289 (or a combination thereof) on periodontal pathogens, P. gingivalis ATCC33277, F. nucleatum ATCC 25586, P. intermedia ATCC 25611 and A. actinomycetemcomitans ATCC 33384. L. reuteri glycerol-dependent antagonistic properties (production of reuterin) was also examined. The study also investigated the impact of the periopathogens on the growth of the probiotic strains. All analysis was done via qRT-PCR. Overall, the paper is straight forward and presents relatively new information. Experiments performed also appear sound and appropriately controlled.

Authors: Thank you very much for your supportive words.

There are several aspects of the paper that could be improved though.

A) The resolution of the figures should be improved; they appear to be of poor quality.

Authors: Figures were directly exported from GraphPad Prism but using low-resolution preferences unfortunately. In the new version we provide .tif and .emf formats with the highest resolution.

B) Figure 2 does not present any new data so should be omitted.

Authors: In Figure 2 results of all four pathogens are integrated and presented as relative (%) inhibition. But there is redundancy with Table 2 indeed. We decided to keep it as Supplementary File (S2_Fig).

C) The discussion section also lacks some important and relevant information. While it states that L. reuteri had the “best anti-pathogen effect” and discusses in detail what aspects could be improved as a probiotic therapy, it is also worth mentioning that Lactobacilli can be acidogenic and aciduric in certain conditions and are often found to be associated with caries. And while it can be effective in clearing periodontal bacteria in vitro, the impact it can have to the overall oral ecology is important to note.

Authors: We are thankful to the reviewer. In a former probiotic-article of our group (Conrads et al 2019) we actually discussed this janus face of acidogenic and aciduric probiotics in depths. We are citing this article (again) plus Badet 2008, the latter reviewing the ecological role of lactobacilli in the oral cavity.

Furthermore, we are expanding the Discussion-section adding the following sentences: Besides the direct antimicrobial activity subjected in our study, there are three [was formerly two] additional central questions to answer when applying (concerted) probiotics. Firstly, could lactic acid bacteria be cariogenic? The probiotics discussed here are acidogenic and aciduric and often found to be associated with caries. And while it can be effective in clearing periodontal bacteria in vitro or even in vivo, other impacts on the overall oral ecology and caries-etiology are important to consider [15, 49].

D) Additionally, the discussion section specifically could be improved if several grammar issues can be corrected with further proofreading/editing (some examples are listed below).

Authors: Thanks for your time and engagement. It is welcome.

1. Line 139 and throughout the paper: growth inhibition was assessed quantifying bacterial genomes via qPCR. Hence, phrases like “comparing cell numbers” or referring to the detected bacterial genome as cell numbers is inaccurate (since CFUs weren’t done to actually count cell numbers).

Authors: You are right. However, qPCR standard curves are produced from DNA extracted from cultures of known cell (CFU) counts. What we count are thus genome-equivalents of cell numbers. For further clearness we used “genome(s)” in almost all cases and included the following phrase in line 141ff: This was achieved by comparing the cell numbers (genome equivalents to be exact) of the pathogens after incubation with or without probiotic strains for 48 hours at 37°C.

2. Line 140: were biofilms grown under anaerobic conditions? If so, please specify here. It is mentioned in the discussion section/line 433 but not specified here.

Authors: Thank you. We have specified: Line 141: …after incubation with or without probiotic strains for 48 hours at 37°C anaerobically (in the case of anaerobes) or in a candle jar (in the case of A. actinomycetemcomitans).

3. Line 141: The growth condition authors used/BHI both and autoclaved human saliva. Please include a reference or explain why this condition was selected.

Authors: The assay is new as stated in the text but based on our experience with autoclaved saliva as important adjuvant in a secondary caries model based on Streptococcus mutans (see Hetrodt et al. 2018, https://doi.org/10.1016/j.archoralbio.2018.03.013). Brain-Heart Infusion medium is a well-known rich medium to support growth of fastidious organisms.

4. Line 154: Collection of biofilms. The author states cells were simply “harvested by transferring culture from wells”. Was any scraping of the biofilm with subsequent sonication step involved?

Authors: We agree that these little tricks are actually very important and should be reported. We added a sentence explaining the procedure: Scraping the biofilm fraction was supported by the pipette tip, which was slightly cut back producing a sharper edge, and by pipetting up and down for dispersion.

5. It could help readers follow the results better if figures in Figure 1 are labeled A-D, and referenced in text/results section

Authors: Thank you, we have changed accordingly! To be congruent, we used the format for Fig 2 (A-B) as well.

6. Line 259: Authors state P. intermedia inhibition is enhanced via a synergistic effect of K12+7746, compared to single species. Is there a significant decrease of P.intermedius genome in K12+7746 vs. K12 or 7746 only?

Authors: Yes, the significance changed from ns (K12 only, p=0.08) and p<0.05 (7746 only) to p<0.01 (both strains), but we re-wrote this sentence for clarification: A strong inhibition of P. intermedia was observed when co-incubated with a mixture of S. salivarius K12 and S. dentisani 7746 (9.90*104 genomes, p<.01). In comparison to the inhibitory effects of the two single probiotics (2.20*105 in case of K12, p=0.08 and 1.41*105 in the case of 7746, p<.05), the significance was higher indicating a synergistic effect.

7. Line 259 and on: Instead of organizing the results section this way, it would help if all the findings of each graph within Figure 1 is written together (instead of splitting single probiotic species impact on specific periodontal bacteria and then going back later to stating the results on mixed-species impact on that periodontal bacteria)

Authors: We think that this is a matter of taste. As the other reviewers agreed with this order, we would like to keep it sorted single versus mixture activity.

8. Figure 2 presents nothing new. Table 2 is fine the way it is but Figure 2 does not really add to the manuscript. Figure 2 should be removed.

Authors: As this was noted by another reviewer we decided to reformat it as Supplementary Files (S2_ Fig).

9. Line 321: “producer-activation” ? Are authors referring more detection of genome as “activation”? Sentence should be rewritten. Referring it to as “persistence” of that probiotic strain seems more accurate.

Authors: We decided to delete this sentence. It also contains interpretation not appropriate under “Results”.

10. Line 344-345: Please add “respectively” after the numbers in the parentheses

Authors: Thank you, we have changed accordingly (line 342 now).

11. Line 345: “However” should be changed to “Although” or “While” and omit “but”

Authors: Thank you, we have changed accordingly.

12. Figure 4: Title of figure should be F. nucleatum, as the format in Figure 1, since the bacterial genome reported are of F. nucleatum when grown with two different strains of L. reuteri.

Authors: Thank you, a good point actually. We have changed accordingly.

13. Line 358: remove “Anyway” and also throughout the manuscript

Authors: Thank you. We have found and removed twice.

14. Line 375: please change “gain more attention” to “are gaining more attention”

Authors: We have changed the grammar.

15. Line 391: Omit however

Authors: We have omitted “however”.

16. Line 411-413: Just simply state it as a possible explanation (take out “an explanation for this,…cannot be given”).

Authors: Thank you for editing this important sentence. We have changed into “A possible explanation could be that a dying and disintegrating target provides more nutrients and supplements for the producer.”

17. Line 435: Should be “the activity is not reduced much by autoclaving”

Authors: Thank you for polishing the grammar; we acknowledge this.

18. Line 435-436: Change to “..was not determined in our experiment and we did not test whether addition of B12 would have further..”

Authors: Thank you again for polishing the grammar; we still acknowledge this.

19. Line 445: “Learning from biotechnology”…? As reported in the literature…?

Authors: We want to express that medical microbiology can learn from other fields such as process engineering. We changed the phrase into “As reported in a process engineering study,..”

Attachment

Submitted filename: Response to reviewer Jansen et al..docx

Decision Letter 1

Abdelwahab Omri

24 Feb 2021

A concerted probiotic activity to inhibit periodontitis-associated bacteria

PONE-D-20-35741R1

Dear Dr. Georg Conrads,

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Kind regards,

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Academic Editor

PLOS ONE

Acceptance letter

Abdelwahab Omri

26 Feb 2021

PONE-D-20-35741R1

A concerted probiotic activity to inhibit periodontitis-associated bacteria

Dear Dr. Conrads:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Abdelwahab Omri

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Fig. Influence of 1% (w/v) glycerol on the growth of four periodontopathogenic bacteria.

    Abbreviations: Pi (Prevotella intermedia), Pg (Porphyromonas gingivalis), Fn (Fusobacterium nucleatum), Aa (Aggregatibacter actinomycetemcomitans), gly (glycerol).

    (TIF)

    S2 Fig. Overall in vitro percent inhibition of periodontal pathogens by probiotic strains S. salivarius M18 and K12, S. dentisani 7746, and L. reuteri ATCC PTA 5289.

    In a culture without glycerol, L. reuteri caused a growth spurt (negative inhibition) of some pathogens. For data see Table 2. Abbreviations: M18 (S. salivarius subsp. salivarius M18), K12 (S. salivarius subsp. salivarius K12), PTA (Lactobacillus reuteri ATCC PTA 5289), 7746 (Streptococcus oralis subsp. dentisani 7746), gly (glycerol).

    (TIF)

    Attachment

    Submitted filename: Response to reviewer Jansen et al..docx

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information files.


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