The crystal structures of NaOEt, NaOPr, NaOBu and NaOAm (Am = amyl = pentyl) were determined from powder data. These compounds crystallize in an anti-PbO structure in the space groups P
21
m and P4/nmm. Additionally, solvates with the composition NaOEt·2EtOH, NaOPr·2PrOH, NaOiPr·5iPrOH and NaOtAm·tAmOH were synthesized, and their structures were determined from single crystals. They form interesting chain structures of different compositions and topologies.
Keywords: sodium alkoxide, powder data, solvate, isopropanol, Bärnighausen tree, PXRD
Abstract
The crystal structures of sodium ethoxide (sodium ethanolate, NaOEt), sodium n-propoxide (sodium n-propanolate, NaOnPr), sodium n-butoxide (sodium n-butanolate, NaOnBu) and sodium n-pentoxide (sodium n-amylate, NaOnAm) were determined from powder X-ray diffraction data. NaOEt crystallizes in space group P 421 m, with Z = 2, and the other alkoxides crystallize in P4/nmm, with Z = 2. To resolve space-group ambiguities, a Bärnighausen tree was set up, and Rietveld refinements were performed with different models. In all structures, the Na and O atoms form a quadratic net, with the alkyl groups pointing outwards on both sides (anti-PbO type). The alkyl groups are disordered. The disorder becomes even more pronounced with increasing chain length. Recrystallization from the corresponding alcohols yielded four sodium alkoxide solvates: sodium ethoxide ethanol disolvate (NaOEt·2EtOH), sodium n-propoxide n-propanol disolvate (NaOnPr·2nPrOH), sodium isopropoxide isopropanol pentasolvate (NaOiPr·5iPrOH) and sodium tert-amylate tert-amyl alcohol monosolvate (NaOtAm·tAmOH, tAm = 2-methyl-2-butyl). Their crystal structures were determined by single-crystal X-ray diffraction. All these solvates form chain structures consisting of Na+, –O− and –OH groups, encased by alkyl groups. The hydrogen-bond networks diverge widely among the solvate structures. The hydrogen-bond topology of the iPrOH network in NaOiPr·5iPrOH shows branched hydrogen bonds and differs considerably from the networks in pure crystalline iPrOH.
1. Introduction
1.1. General
Even today, there are simple chemical compounds for which the crystal structures are not known. The reasons for this deficiency in knowledge include synthetic difficulties, complex phase behaviour, instability in a vacuum and under an inert atmosphere, lack of single crystals, unusual or ambiguous space groups, and disorder. All these difficulties can be found in sodium alkoxides (sodium alcoholates) NaOR and their solvates NaOR·x ROH, with R being a lower alkyl group. In principle, these compounds can be easily prepared by the reaction of sodium with the corresponding alcohol. However, in practice, the synthesis of the pure phases presents some obstacles. For example, when sodium is reacted with ethanol and the ethanol excess is removed in vacuo, a white powder remains. This powder turns into a liquid within a few minutes under argon. Further evaporation under vacuum results in a powder, which again liquefies under argon. Finally, a white residue is obtained, which consists of a mixture of two to four different phases, including sodium ethoxide (NaOEt) and its ethanol disolvate NaOEt·2EtOH (Beske et al., 2020 ▸). Phase-pure NaOEt is only obtained after a few hours of evaporation under vacuum at 50 °C. The initially formed solvate NaOEt·2EtOH decomposes under vacuum, and even under dry argon, and is stable only in the presence of ethanol vapour. Similar difficulties are observed for other sodium alkoxides (see below). Additionally, all the compounds are very sensitive to moisture.
In industry, as well as in the laboratory, sodium alkoxides are widely used as bases and as reagents in organic synthesis. This is not only true for NaOEt, but also for other alkoxides. For example, sodium tert-amylate (sodium 2-methyl-2-butoxide, NaOtAm) is used industrially on a multi-ton scale in the synthesis of diketopyrrolopyrrole pigments, which today are the most commonly used pigments for red car coatings (Hunger & Schmidt, 2018 ▸).
1.2. Historical notes on NaOEt
Sodium ethoxide was synthesized as early as 1837 by Liebig (Liebig, 1837 ▸; Beske et al., 2020 ▸). Since ethanol was considered the hydrate of ethyl ether (2EtOH ≙ Et2O·H2O), sodium ethoxide was regarded as an adduct of diethyl ether and sodium oxide, which actually corresponds to the correct stoichiometry: Et2O·Na2O ≙ 2NaOEt. Correspondingly, the name ‘Aethernatron’ (Geuther, 1868a ▸,b ▸) was used besides the names ‘Natriumalkoholat’ (Geuther, 1859 ▸) and ‘Natriumäthylat’ (Wanklyn, 1869 ▸).
Many years later, the crystal structure of sodium methoxide (NaOMe) was determined from powder X-ray diffraction (PXRD) data (Weiss, 1964 ▸). Surprisingly, the crystal structure of NaOEt was not determined, although it is isostructural with NaOMe. It would have been an easy task to index the powder pattern of NaOEt manually, because NaOEt crystallizes in the tetragonal crystal system, and the lattice parameters a and b of NaOEt are almost identical to those in NaOMe.
In 1976, the PXRD patterns of NaOEt and NaOEt·2EtOH were published in an article devoted to the thermal stability of alkali ethoxides (Blanchard et al., 1976 ▸). Again, no attempt was made to index the powder data.
As much as 30 years later, the powder data of NaOEt and sodium n-propoxide (NaOnPr) were indexed, but the crystal structures remained indeterminate (Chandran et al., 2006 ▸). Finally, we determined the crystal structure of NaOEt from powder data, and of NaOEt·2EtOH from single-crystal data a few months ago. The crystal structures were recently briefly described in a chemical journal (Beske et al., 2020 ▸), without any discussion on the ambiguity of the space group or of the crystal symmetry. Here, we report a full discussion of the ambiguities of the space group of NaOEt, including a Bärnighausen tree of the possible space groups and their subgroups.
1.3. Previous work on other alkoxides
The first determined crystal structure of a sodium alkoxide was that of NaOMe (Weiss, 1964 ▸). NaOMe is isotypical to LiOMe (Wheatley, 1961 ▸) and crystallizes in a layer structure in the space group P4/nmm, with Z = 2.
Potassium methoxide, KOMe, crystallizes in the same space group type as NaOMe, but the structure is different: whereas the Na+ ions in NaOEt are coordinated to four O atoms, the K+ ions in KOMe are coordinated to five O atoms in a square-pyramidal geometry (Weiss, 1963 ▸; Weiss & Alsdorf, 1970 ▸). The O atom is surrounded by five K+ ions and the methyl group has a distorted octahedral geometry. A similar structure was found for partially hydrolysed NaOMe with the composition Na(OMe)1– x(OH)x, with x ≈ 1/3 (Weiss, 1964 ▸).
Sodium tert-butoxide, NaOtBu, exists in two polymorphic forms. Both structures were determined by single-crystal X-ray diffraction. One of the phases consists of hexamers and crystallizes in the space group P212121, with Z = 20, with five hexamers per asymmetric unit (Østreng et al., 2014 ▸). The other phase contains a 1:1 mixture of hexamers and nonamers in the space group R
, with Z = 6, with 90 formula units per unit cell (Greiser & Weiss, 1977 ▸; Davies et al., 1982 ▸; Nekola et al., 2002 ▸). Accordingly, both phases have quite large unit cells.
1.4. Solvates
Sodium alkoxides can form solvates with their corresponding alcohols. Already in 1837 Liebig had prepared an ethanol solvate of NaOEt by the reaction of sodium with ethanol at 50 °C and subsequent cooling of the solution to room temperature, whereupon the mixture turned into a solid (Liebig, 1837 ▸). However, Liebig apparently did not recognize this precipitate as a solvate. In 1868, Scheitz determined the composition of this solvate as NaOEt·2EtOH (Geuther, 1868a ▸). This result was confirmed by Marsh (Geuther, 1868b ▸), whereas Wanklyn (1869 ▸) determined the composition to be NaOEt·3EtOH. In 1880, Frölich again found a composition of NaOEt·2EtOH using a different method (Geuther & Frölich, 1880 ▸). Lescoeur (1895 ▸) measured the vapour pressure during slow evaporation of a suspension of NaOEt in EtOH and observed that the vapour pressure did not change between compositions of NaOEt·1.7EtOH and nearly pure NaOEt, and thus concluded that the solvate had the composition NaOEt·2EtOH.
The crystal morphology of NaOEt·2EtOH was described as ‘völlig durchsichtige farblose nadelförmige Krystalle’ (fully transparent, colourless, needle-like crystals) (Geuther, 1868a ▸).
Geuther & Frölich (1880 ▸) also described a solvate with a composition of NaOnPr·2nPrOH. A tAmOH solvate of NaOtAm was mentioned by Friedrich et al. (1999 ▸), but no composition as given.
The solvates are thermally remarkably stable. NaOEt·2EtOH must be heated at ambient pressure to 200 °C and NaOnPr·2nPrOH even to 220 °C before the pure solvent-free alkoxides are obtained (Geuther & Frölich, 1880 ▸). Solvent-free NaOEt is also quite stable. According to differential thermal analysis, the decomposition starts at 50 °C, but this decomposition is very slow and occurs over a large temperature range. Finally, at 310 °C the decomposition ‘adopts an explosive character’ (‘prendre un charactère explosif’; Blanchard et al., 1976 ▸).
Crystals of the solvates of NaOnPr, NaOiPr and NaOtAm do form easily when sodium is reacted with the corresponding alcohols and the solution is subsequently carefully evaporated. However, no structure of any sodium alkoxide solvate was determined between 1837 and 2019 (Beske et al., 2020 ▸). The reason might be the pronounced sensitivity of the crystals to moisture, air, vacuum and dry inert gas.
1.5. Work in this article
In this article, we describe the synthesis, structure determination, crystal structure and disorder of NaOEt, NaOnPr, NaOnBu and NaOnAm, and of the solvates NaOEt·2EtOH, NaOnPr·2nPrOH, NaOiPr·5iPrOH and NaOtAm·tAmOH. The structures of the solvent-free compounds were determined by PXRD and the structures of the solvates by single-crystal X-ray analyses. In the cases of NaOEt and NaOnPr, the space-group symmetry was ambiguous, and the corresponding symmetry relationships were elaborated using a Bärnighausen tree.
2. Experimental details
2.1. Syntheses
All synthetic procedures were performed under an argon atmosphere using Schlenk techniques. All alcohols, as well as toluene, were dried over sodium and freshly distilled.
2.1.1. NaOEt
0.34 g (15 mmol) of sodium were added to 10 ml (170 mmol) of ethanol. The mixture was allowed to react for 30 min at room temperature. The obtained solution was heated to 50 °C and the excess ethanol was removed under vacuum. The resulting solid product was evaporated at 50 °C under vacuum for 3 h, gently crushed with a glass rod and again evaporated for one additional hour under the same conditions. A phase-pure white powder of NaOEt was obtained.
2.1.2. NaOnPr, NaOnBu and NaOnAm
NaOnPr, NaOnBu and NaOnAm were synthesized in a similar manner to NaOEt. Details are given in the supporting information.
2.1.3. NaOEt·2EtOH
0.34 g of sodium (15 mmol) were added to 5.0 ml (85 mmol) of ethanol. After reacting for 30 min, a gel was obtained. This gel was stored for three months at room temperature, resulting in a pale-brown solution and colourless needles of NaOEt·2EtOH with a size of up to 1 mm.
2.1.4. NaOnPr·2nPrOH, NaOiPr·5iPrOH and NaOtAm·tAmOH
Syntheses and crystal growth of these compounds resembled the procedure used for NaOEt·2EtOH. Details are given in the supporting information.
2.2. Pre-characterization
The stoichiometry of the solvent-free alkoxides was confirmed by decomposition experiments with HCl, which verified their stoichiometry. Details are reported in the supporting information. For the solvates, this analysis could not be performed, because the solvates decomposed rapidly when removed from their alcoholic mother liquor.
2.3. Powder X-ray diffraction (PXRD)
For the PXRD studies, the samples were sealed in glass capillaries with a 1.0 mm diameter. The PXRD patterns were measured in transmission mode on a Stoe Stadi-P diffractometer equipped with a Ge(111) monochromator and a linear position-sensitive detector. The capillaries were spun during the measurements. All measurements were performed at room temperature, using Cu Kα1 radiation (λ = 1.5406 Å), with a 2θ range of 2–100° (2–80° for NaOEt).
2.4. Structure determination from powder data
The crystal structures of the solvent-free alkoxides NaOEt, NaOnPr, NaOnBu and NaOnAm were determined from PXRD data. The powder data were indexed with the program DICVOL (Boultif & Louër, 1991 ▸) within the program package DASH (David et al., 2006 ▸). The structures were solved by the real-space method with simulated annealing using DASH. Subsequently, Rietveld refinements were performed using TOPAS (Coelho, 2018 ▸).
For all four compounds indexing led to a tetragonal unit cell with Z = 2. The systematic extinction indicated P4/n, P4/nmm and P
21
m as possible space groups. The structures were successfully solved in P4/nmm and P
21
m, using two fragments, an Na atom and a rigid alkoxide moiety. The Na atom was placed on the special position, which allowed a distorted tetrahedral coordination [Wyckoff position 2a (
,
, 0) in P4/nmm origin choice 2; 2a (0, 0, 0) in P
21
m], as explained in §3.1. The alkoxide fragment was placed on a general position, with an occupancy of 0.125 (in P4/nmm) or 0.25 (in P
21
m). In the resulting structures, the C atoms moved close to a site with ..m symmetry, and were subsequently placed on this site, resulting in an occupancy of 0.25 (in P4/nmm) or 0.5 (in P
21
m). In the Rietveld refinements of NaOEt, restraints were only necessary for the H atoms. For NaOnPr, NaOnBu and NaOnAm, additional restraints were applied to the O—C and C—C bond lengths, and to the O—C—C and C—C—C bond angles. All H atoms were refined using restraints on the bond lengths and angles with quite high weights. Further details of the Rietveld refinements are given in the supporting information.
Note that there are two different origin choices for P4/nmm. Origin choice 2 (origin on
) was used for the structure solution, due to the requirements of DASH. In contrast, the origin choice 1 (origin on
, as in P
21
m) was used for the Bärnighausen tree.
2.5. Single-crystal X-ray diffraction
A single crystal of NaOEt·2EtOH was placed in a sealed glass capillary and data were collected at −38 (2) °C. Single crystals of NaOnPr·2nPrOH and NaOiPr·5iPrOH were mounted by freezing them in a drop of oil and their data collected under a cold nitrogen stream at −100 (2) °C using an Oxford Cryosystems cryostream device. Crystals of NaOtAm·tAmOH were sealed in a glass capillary under paraffin oil (dried with Na) and their data collected at room temperature.
Single-crystal data were collected on a Bruker SMART APEX three-circle diffractometer equipped with an Incoatec IμS Cu microfocus source with mirror optics and an APEX II CCD detector. The software package APEX3 (Bruker, 2015 ▸) was used for data collection and data reduction. The structures were solved by direct methods with SHELXT (Sheldrick, 2015a ▸) and refined with SHELXL (Sheldrick, 2015b ▸). All non-H atoms, except for disordered C atoms, were refined anisotropically. Disordered C atoms were refined isotropically. H atoms bonded to C atoms were treated with the riding model. In the case of NaOEt·2EtOH and NaOnPr·2nPrOH, all OH protons could be located by Fourier synthesis. In NaOiPr·5iPrOH, it was not possible to detect which of the four ligands coordinating to the Na+ ion is the iPrO− anion, and which are the three iPrOH molecules. (The H atom could not be located, all Na—O bonds were of a similar length, all C—O bonds were of similar length, and in addition no decision could be made based on the size of the angles; furthermore, there is a twofold axis through the Na+ ion, hence there are always pairs of symmetrically equivalent ligands.) All O atoms of NaOiPr·5iPrOH are part of a complex hydrogen-bond network, and obviously the H atoms are disordered within this network. Therefore, for each Na+ cation, H atoms with occupancies of 0.75 were placed at all four O atoms connected to the Na+ cation. For NaOtAm·tAmOH, the electron density indicates that the H atoms of the OH groups are located along hydrogen bonds. However, the limited data quality did not allow an unrestrained refinement of the positions of these H atoms. According to the charge compensation, the H atoms should be disordered, too.
The single crystals of NaOiPr·5iPrOH are highly sensitive; they decompose within seconds except when they are kept in their mother liquor under an inert atmosphere. Therefore, only rather poor diffraction data could be obtained. Correspondingly, a large number of restraints had to be used in the refinement. The disordered C atoms were refined isotropically, with restraints on the C—C and C—O bond lengths. The ordered C atoms were refined anisotropically, but their anisotropic displacement parameters were restrained to be similar to those of neighbouring atoms.
3. Results and discussion
3.1. Space group and disorder of sodium ethoxide (NaOEt)
Sodium ethoxide is difficult to obtain as a pure phase. The reaction of sodium with ethanol, with subsequent evaporation at room temperature under vacuum or evaporation at the boiling point at ambient pressure, results in a mixture of two to four phases, including NaOEt and NaOEt·2EtOH. Evaporation under vacuum at 50 °C for several hours leads to phase-pure NaOEt. Nevertheless, most of our recorded powder patterns were contaminated by traces of other phases.
The powder pattern of NaOEt could be indexed with a tetragonal unit cell, with a = b = 6.2, c = 9.1 Å and V = 352 Å3. According to Hofmann’s volume increments (Hofmann, 2002 ▸), the unit-cell volume corresponds to Z = 4. The systematic extinctions pointed to the space group P4/nbm. Further experiments revealed that some of the weak peaks in the powder pattern were actually caused by foreign phases. The pattern of the phase-pure NaOEt could be indexed with a unit cell of half of the initial volume, with a = b = 4.41, c = 9.07 Å, α = β = γ = 90°, V = 176.4 Å3 and Z = 2.
The systematic extinctions lead to the extinction symbol Pn––, which corresponds to the space group P4/n or P4/nmm (Hahn, 2005 ▸). In P4/nmm, the structure could be solved without difficulty by the real-space method with simulated annealing using the program DASH (David et al., 2006 ▸). The unit cell contains two formula units. In P4/nmm there are three different Wyckoff positions with a multiplicity of two: positions 2a and 2b with site symmetry
m2, and 2c with site symmetry 4mm. A tetrahedral coordination of the Na+ ion agrees with a
m2 site symmetry. Correspondingly, the Na+ ion was set at position 2a. A rigid C2H5O fragment was placed on the general position (16k) with an occupancy of 0.125. The best solution was found in about 10 out of 25 runs and had a good profile-χ2 value of 7.26. The O atom was found very close to the 4mm site (Wyckoff position 2c), hence it could be set at this site. The ethyl group is disordered around the 4mm site. The two C atoms could be situated on the general position (16k), resulting in eightfold disorder, or on mirror planes parallel to (100) and (010) (Wyckoff position 8i, site symmetry .m.), or on diagonal mirror planes (Wyckoff position 8j, site symmetry ..m), each with fourfold disorder.
The structure was refined by the Rietveld1 method (Loopstra & Rietveld, 1969 ▸) with TOPAS, with the C atoms on the general position (16k). During the refinement, the C atoms moved close to the diagonal mirror planes. Correspondingly, they were set to the sites 8j (..m). The refinements converged with good R values (Table 1 ▸) and smooth difference curves (Fig. 1 ▸ a). The ethyl groups are fourfold disordered around the fourfold axes, see Fig. 2 ▸(a). A corresponding structure was also found for lithium methoxide (LiOMe) (Wheatley, 1961 ▸) and sodium methoxide (NaOMe) (Weiss, 1964 ▸).
Table 1. Rietveld refinement of NaOEt in P4/nmm and P
21
m under identical conditions, with restrained H-atom positions and a 2θ range of 2–60°.
The values marked by a ′ are background-subtracted values. N(param) is the number of structural parameters, including the occupancy parameter.
| P4/nmm |
P
21
m
|
P
21
m with both orientations of Et |
|
|---|---|---|---|
| R wp (%) | 4.320 | 4.146 | 4.149 |
| R wp′ (%) | 16.98 | 16.30 | 16.30 |
| R p (%) | 3.205 | 3.122 | 3.126 |
| R p′ (%) | 18.21 | 17.74 | 17.75 |
| Goodness-of-fit | 2.016 | 1.935 | 1.936 |
| N(param) | 13 | 13 | 13 + 1 (occupancy) |
| Occupancy of the ethyl group | 0.25 (fixed) | 0.5 (fixed) | 0.476 (6):0.024 (6) |
Figure 1.
Rietveld plots of NaOEt performed in different space groups under identical conditions, i.e. (a) P4/nmm and (b) P
21
m. Experimental data are shown as black dots and simulated data as a red line, with the difference curve in green below. The vertical tick marks denote the reflection positions. The small arrow in (b) denotes the 210 reflection, which is extinct in P4/nmm, but present in P
21
m.
Figure 2.
Structural models of NaOEt in (a) P4/nmm (origin choice 1) and (b) P
21
m. Colour key: Na violet, O red and C grey (disordered). H atoms have been omitted for clarity. The view direction is [001]. The crystallographic symmetry elements are included.
A symmetry analysis revealed that in the subgroup P
21
m the ethyl groups would have a twofold disorder only. P
21
m is a translationengleiche subgroup of P4/nmm (Wondratschek & Müller, 2004 ▸; Aroyo, 2016 ▸) [see Fig. 2 ▸(b)]. These two space groups are difficult to distinguish from each other using the systematic extinctions in PXRD. P4/nmm requires the reflection condition hk0: h+k = 2n, whereas P
21
m requires only h00: h = 2n and 0k0: k = 2n (Hahn, 2005 ▸). However, in the 2θ range up to 60°, the powder pattern contains only one reflection, which is systematically absent in P4/nmm but can be present in P
21
m. This is the 210 reflection, which has an intensity of close to zero (see Fig. 1 ▸
b). Hence, an examination of the systematic extinctions left the space group ambiguous.
As a test for the space group, Rietveld refinements were performed in P4/nmm and P
21
m under identical conditions (identical treatment of background, profile parameters, anisotropic peak broadening, etc.). It is an interesting peculiarity that the number of structural parameters is identical in both space groups, which is a very rare case for an organic crystal structure in a group–subgroup relationship. Hence, the resulting confidence values of both space groups can be compared directly. The difference in the R values is slightly in favour of P
21
m (see Table 1 ▸). The Rietveld plots are very similar, just the 111 reflection at 2θ = 30.28° is significantly better fitted in P
21
m (see Fig. 1 ▸).
In both space groups, the structure is very similar, except for the disorder of the ethyl groups. In P4/nmm the ethyl group is disordered around a fourfold axis, which changes to a twofold axis in P
21
m [see Figs. 2 ▸(a) and 2 ▸(b)].
As a further test for the space group, a Rietveld refinement was performed in the space group P
21
m with two sets of ethyl groups, one in the position x, x +
, z (Wyckoff position 8j) according to the P
21
m structure, and the other on the position −x, x +
, z, which is occupied in P4/nmm, but not in P
21
m (see Fig. 2 ▸). The occupancies of both sets were set at p and
− p. For P
21
m, p would be
and for P4/nmm, p is
. The parameter p refined to 0.476 (6). This value and the similarity of the R values between this refinement and the refinement in P
21
m clearly indicate that, within the limitations of the powder data, the correct space group is P
21
m instead of P4/nmm.
A complete ordering of the ethyl groups would require further reduction of symmetry, e.g. to P
or P21. The corresponding Bärnighausen tree (Bärnighausen, 1980 ▸; Chapuis, 1992 ▸; Müller, 2004 ▸, 2006 ▸, 2012 ▸) is shown in Fig. 3 ▸. Such a symmetry reduction would result in a deviation from tetragonal symmetry and/or in a larger unit cell (supercell). Both effects should be clearly visible in the powder pattern. However, the powder pattern of NaOEt gave no indication of either effect. Hence, the space group is likely to be P
21
m.
Figure 3.
The Bärnighausen tree of NaOEt. Colour key: Na violet, O red and C grey. H atoms have been omitted for clarity. The view direction is [001]. t2 denotes a translationengleiche subgroup of index two and i2 an isomorphous subgroup of index two. The small tables give the atom types, Wyckoff positions and site symmetries. Occ denotes the occupancy, if different from one. The experimental crystal symmetry is P
21
m, with Z = 2.
A transition into a translationengleiche subgoup of index 2 is frequently associated with twinning. Correspondingly, the NaOEt crystals may be twinned, i.e. in one domain the orientation of the ethyl groups is that shown in Fig. 2 ▸ b and in the other domain the groups are rotated by 90°. However, such a twinning cannot be observed by powder diffraction; hence, it remains unclear if the crystals are actually twinned.
The final Rietveld refinements were carried out in P
21
m. No restraints were applied to the Na, C and O atoms. Restraints were only necessary for the H-atom positions. The final Rietveld plot is shown in Fig. 4 ▸. Crystallographic data are included in Table 2 ▸.
Figure 4.
Final Rietveld plot of NaOEt. Experimental data are shown as black dots and simulated data as a red line, with the difference curve in green below. The vertical tick marks denote the reflection positions.
Table 2. Experimental details for NaOMe, NaOEt, NaOnPr, NaOnBu and NaOnAm.
| NaOMe (Weiss, 1964 ▸) | NaOEt | NaOnPr | NaOnBu | NaOnAm | |
|---|---|---|---|---|---|
| Crystal data | |||||
| Chemical formula | CH3ONa | C2H5ONa | C3H7ONa | C4H9ONa | C5H11ONa |
| CCDC number | – | 1943793 | 1998221 | 1998220 | 1998219 |
| M r | 54.02 | 68.05 | 82.08 | 96.10 | 109.12 |
| Crystal system | Tetragonal | Tetragonal | Tetragonal | Tetragonal | Tetragonal |
| Space group (No.) | P4/nmm (129) |
P
21
m (113) |
P4/nmm (129) | P4/nmm (129) | P4/nmm (129) |
| Z, Z′ | 2,
|
2,
|
2,
|
2,
|
2,
|
| Temperature (K) | 298 | 298 | 298 | 298 | 298 |
| a (Å) | 4.343 (5) | 4.41084 (4) | 4. 38439 (5) | 4.43232 (9) | 4.4084 (2) |
| c (Å) | 7.432 (10) | 9.06779 (17) | 12.1431 (3) | 14.0143 (9) | 16.9376 (12) |
| V (Å3) | 140.2 (2) | 176.418 (5) | 233.426 (8) | 275.318 (19) | 329.16 (4) |
| ρcalc (103 kg m−3) | 1.28 | 1.28 | 1.17 | 1.16 | 1.11 |
| Radiation type | Cu Kα | Cu Kα 1 | Cu Kα 1 | Cu Kα 1 | Cu Kα 1 |
| Wavelength (Å) | 1.5418 | 1.5406 | 1.5406 | 1.5406 | 1.5406 |
| μ (mm−1) | – | 1.845 | 1.473 | 1.314 | 1.154 |
| Data collection | |||||
| Diffractometer | Goniometer with counting tube | Stoe Stadi-P | Stoe Stadi-P | Stoe Stadi-P | Stoe Stadi-P |
| Specimen mounting | Powder in N2 stream between polymer films | 1.0 mm glass capillary | 1.0 mm glass capillary | 1.0 mm glass capillary | 1.0 mm glass capillary |
| Data collection mode | Transmission | Transmission | Transmission | Transmission | Transmission |
| Detector | Counting tube | Linear position-sensitive | Linear position-sensitive | Linear position-sensitive | Linear position-sensitive |
| 2θmin (°) | 11 | 2.0 | 2.0 | 2.0 | 2.0 |
| 2θmax (°) | 103 | 80.0 | 100 | 100 | 100 |
| 2θstep (°) | – | 0.01 | 0.01 | 0.01 | 0.01 |
| Refinement | |||||
| R p | 0.159 | 0.0233 | 0.0373 | 0.0347 | 0.0376 |
| R wp | – | 0.0339 | 0.0479 | 0.0471 | 0.0535 |
| R exp | – | 0.0214 | 0.0295 | 0.0240 | 0.0273 |
| R p′(a) | – | 0.133 | 0.161 | 0.175 | 0.120 |
| R wp′(a) | – | 0.134 | 0.159 | 0.187 | 0.158 |
| R exp′(a) | – | 0.085 | 0.0981 | 0.0951 | 0.0806 |
| Goodness-of-fit | – | 1.42 | 1.62 | 1.96 | 1.96 |
| No. of data points | 64 observed intensities | 7800 | 9800 | 9800 | 9800 |
| No. of parameters | 4 | 40 | 56 | 61 | 72 |
| No. of restraints | 0 | 8 | 11 | 21 | 26 |
| H-atom treatment | f H included in C atom | Refined with restraints | Refined with restraints | Refined with restraints | Refined with restraints |
Note: (a) R p′, R wp′ and R exp′ values are background-corrected data according to Coelho (2018).
The crystal structure of NaOEt (Fig. 5 ▸ b) is similar to the structures of NaOMe and LiOMe (LiOMe type; Fig. 5 ▸ a). The Na+ ions form a quadratic net in the (001) plane. The O atoms are situated in the centre of each mesh 0.734 (3) Å above or below the plane. The ethyl groups point away from the nets on both sides; hence, they form covering nonpolar layers on both sides of the ionic Na–O nets. Subsequent layers are stacked in the [001] direction. This structure can be regarded as an anti-PbO structure. In red PbO (litharge; Boher et al., 1985 ▸), the Pb2+ and O2− ions form the same net as the O and Na atoms in NaOEt, and the lone pairs of the Pb2+ ion in PbO resemble the positions of the ethyl groups in NaOEt (see Figs. 5b ▸ and 5c ▸).
Figure 5.
The crystal structures of (a) NaOMe, (b) NaOEt and (c) PbO (litharge). Colour key: Na violet, O red, C grey, H white and Pb blue. In part (c), the large light-green balls represent the lone pairs of the Pb2+ ions. The view direction is [100]. For a better comparison, the unit cell of NaOMe was shifted by (0, 0,
) with respect to the original data of Weiss (1964 ▸) and the H atoms of NaOMe were added in calculated positions (with a fourfold disorder). Drawings were made with Mercury (Macrae et al., 2020 ▸).
LiOMe and NaOMe crystallize in the space group P4/nmm (Z = 2), with the methyl group on the fourfold axis, which causes no problems, because the shape of the methyl group is close to spherical. In contrast, in NaOEt, the crystal symmetry is reduced to P
21
m. Astonishingly, NaOnPr and the higher sodium alkoxides again adopt the higher symmetry P4/nmm (Z = 2), with a fourfold disorder of the alkyl groups (see below). This raises the question, why does NaOEt not adopt P4/nmm symmetry? An ‘intuitive’ explanation for the lower symmetry of NaOEt would be that an ethyl group has a ‘less cylindrical’ shape than a methyl or propyl group and, hence, avoids being situated on a fourfold axis. The reduced disorder of the ethyl groups of NaOEt in P
21
m leads to a more efficient packing and a higher density. Actually, the density of NaOEt is 4% higher than the average density of NaOMe and NaOnPr, both of which crystallize in P4/nmm.
3.2. Crystal structures, space group and disorder of NaOnPr, NaOnBu and NaOnAm
Sodium n-propoxide (NaOnPr), sodium n-butoxide (NaOnBu) and sodium n-amylate (sodium n-pentoxide, NaOnAm) were synthesized from sodium and the corresponding alcohols. Upon evaporation of the alcoholic solutions, the solvates precipitated initially (as a mixture with the solvent-free phases). Further evaporation led to the solvent-free forms. The compounds are very sensitive to water; hence, any trace of moisture, also from air, had to be avoided during synthesis, evaporation and PXRD measurements.
The powder diagrams could be easily indexed with tetragonal unit cells, with Z = 2. The structures were solved by the real-space method and refined by the Rietveld method.
The crystal structures are similar to that of NaOEt (anti-PbO type). In the case of NaOnPr, the space group is ambiguous. A refinement in P
21
m with two sets of alkyl groups, as performed for NaOEt, did not yield clear results. The occupancies refined to values of 0.38 (3) and 0.12 (3), which is exactly midway between 0.25 (for P4/nmm) and 0.5 (for P
21
m) (see Table 3 ▸). However, the refinement with one set of alkyl groups gave significantly lower confidence values in P4/nmm than in P
21
m. For NaOnBu and NaOnAm, refinements in P4/nmm also provided a better fit than in P
21
m (Table 4 ▸). Correspondingly, the final refinements of all three compounds were performed in P4/nmm. The final Rietveld plots are shown in Fig. 6 ▸. Crystallographic data are included in Table 2 ▸. The crystal structures are shown in Fig. 7 ▸.
Table 3. Rietveld refinement of NaOnPr in P4/nmm and P
21
m under identical conditions, with restraints on the C and H atoms.
The values marked by a ′ are background-subtracted values. The last column denotes a refinement in P
21
m with two sets of propyl groups, one corresponding to the orientation in P
21
m and the other rotated by 90°, which is occupied in P4/nmm, but empty in P
21
m. N(param) is the number of structural parameters, including the occupancy parameter.
| P4/nmm |
P
21
m
|
P
21
m with both orientations of nPr |
|
|---|---|---|---|
| R wp (%) | 5.424 | 5.654 | 5.386 |
| R wp′ (%) | 17.953 | 18.714 | 17.832 |
| R p (%) | 4.198 | 4.376 | 4.238 |
| R p′ (%) | 18.139 | 18.908 | 18.324 |
| Goodness-of-fit | 1.837 | 1.915 | 1.824 |
| N(param) | 18 | 18 | 18 + 1 (occupancy) |
| Occupancy p | 0.25 (fix) | 0.5 (fix) | 0.38 (3):0.12 (3) |
Table 4. Rietveld refinement of NaOnBu and NaOnAm in P4/nmm and P
21
m under identical conditions, with restraints on the C and H atoms.
N(param) is the number of structural parameters, including the occupancy parameter.
| NaOnBu | NaOnAm | |||
|---|---|---|---|---|
| P4/nmm |
P
21
m
|
P4/nmm |
P
21
m
|
|
| R wp (%) | 4.620 | 4.884 | 5.403 | 5.762 |
| R wp′ (%) | 18.52 | 19.30 | 15.87 | 17.03 |
| R p (%) | 3.578 | 3.766 | 3.875 | 4.071 |
| R p′ (%) | 18.73 | 19.11 | 12.44 | 13.13 |
| Goodness-of-fit [S] | 1.924 | 2.032 | 1.974 | 2.106 |
| N(param) | 23 | 23 | 28 | 28 |
Figure 6.
Final Rietveld plots of (a) NaOnPr, (b) NaOnBu and (c) NaOnAm. Experimental data are shown as black dots and simulated data as a red line, with the difference curve in green below. The vertical tick marks denote the reflection positions.
Figure 7.
The crystal structures of (a) NaOnPr, (b) NaOnBu and (c) NaOnAm. Colour key: Na violet, O red, C grey and H white. The view direction is [100].
The lattice parameters and the space group of NaOnPr agree with the data determined by Chandran et al. (2006 ▸).
The n-butyl and n-amyl groups are highly disordered, and the electron density is smeared out, especially for the terminal and the next-to-terminal C atoms. The description of these structures in P4/nmm with fourfold disordered alkyl groups on Wyckoff position 8j is only an approximation of the actual electron density.
We tried to prepare phase-pure powders of solvent-free NaOiPr and NaOtAm, but the crystal structures could not be solved by PXRD yet. The samples probably contained mixtures of different phases.
3.3. Solvates
By crystallization from the corresponding alcohols, we obtained single crystals of four alcohol solvates of sodium alkoxides: NaOEt·2EtOH, NaOnPr·2nPrOH, NaOiPr·5iPrOH and NaOtAm·tAmOH. All of these solvates are sensitive to moisture and air. In a vacuum and under argon (or nitrogen), they decompose into their solvate-free forms. The decomposition is comparably slow for NaOEt·2EtOH, but fast for NaOiPr·5iPrOH. Correspondingly, the solvates must be stored in their mother liquor or in the presence of vapours of the corresponding alcohols or kept at low temperature.
The chemical compositions and crystal structures of these four solvates were determined by single-crystal X-ray diffraction. However, there were three obstacles: (i) the mounting of the crystals on the diffractometer was challenging due to their sensitivity to air, moisture, vacuum and dry inert gas; (ii) the crystal quality was limited, especially for NaOiPr·5iPrOH; (iii) the crystal structures of NaOnPr·2nPrOH and NaOiPr·5iPrOH are highly disordered. In NaOnPr·2nPrOH, the disorder affects all of the propyl groups. In NaOiPr·5iPrOH, four of the ten iPrOH units are disordered over two widely separated positions each.
The stability of the solvates of the sodium n-alkoxides decreases with increasing chain length. Correspondingly, crystal structures could be determined only for the solvates of NaOEt and NaOnPr, whereas the solvates of NaOnBu and NaOnAm are highly instable, poorly crystalline and decompose rapidly, even under cold dry nitrogen.
3.3.1. NaOEt·2EtOH and NaOnPr·2nPrOH
Sodium ethoxide and sodium n-propoxide crystallize as needles (see Fig. 8 ▸). The single-crystal X-ray analysis (Table 5 ▸) revealed the compounds to be disolvates with the composition NaOR·2ROH, as determined by Geuther (1868a ▸,b ▸) and Frölich (Geuther & Frölich, 1880 ▸). Both solvates are isostructural. The O atom of the alkoxide anion (RO−) bridges two Na+ ions, leading to helical Na—O—Na—O chains. The chains follow a crystallographic 21 screw axis. The Na+ ions are additionally coordinated to two alcohol molecules (ROH), resulting in a distorted tetrahedral coordination geometry for the Na+ ions. In NaOnPr·2nPrOH, all the propyl groups are disordered and most of the C atoms were refined with split positions, with occupancies between 0.40 and 0.60. The OH groups of the alcohol molecules form hydrogen bonds to neighbouring ROH molecules and RO− anions, which additionally stabilize the chains (see Fig. 9 ▸). The alkyl groups point outwards. Hence the chains are like tubes, with a polar/ionic inner region and a nonpolar outer region. In the crystal, all the tubes are arranged parallel and form a distorted hexagonal packing (see Fig. 10 ▸). However, the space group is different, i.e. P21/c for NaOEt·2EtOH and C2/c for NaOnPr·2nPrOH.
Figure 8.
The crystals of (a) NaOnPr·2nPrOH (image width about 15 mm) and (b) NaOtAm·tAmOH (image width about 2 mm), both in polarized light.
Table 5. Experimental details for the sodium alkoxide solvates.
All determinations were carried out with Cu Kα radiation using a Siemens Bruker three-circle diffractometer with an APEXII detector, an Incoatec Iμs microfocus source and mirror optics.
| NaOEt·2EtOH | NaOnPr·2nPrOH | NaOiPr·5iPrOH | NaOtAm·tAmOH | |
|---|---|---|---|---|
| Crystal data | ||||
| Chemical formula | C2H5ONa·2C2H5OH | C3H7ONa·2C3H7OH | C3H7ONa·5C3H7OH | C5H11ONa·C5H11OH |
| CCDC number | 1943794 | 1998225 | 1998224 | 1998227 |
| M r | 160.18 | 202.26 | 382.55 | 198.27 |
| Crystal system | Monoclinic | Monoclinic | Monoclinic | Monoclinic |
| Space group (No.) | P21/n (14) | C2/c (15) | C2/c (15) | P21/c (14) |
| Z, Z′ | 4, 1 | 8, 1 | 8, 1 | 4, 1 |
| Temperature (K) | 238 (2) | 173 (2) | 173 (2) | 296 (2) |
| a (Å) | 11.622 (6) | 23.745 (5) | 21.2073 (18) | 10.1260 (8) |
| b (Å) | 5.1926 (9) | 5.0750 (11) | 17.1307 (13) | 6.0299 (5) |
| c (Å) | 17.682 (6) | 24.174 (5) | 17.825 (2) | 20.6944 (18) |
| β (°) | 104.08 (3) | 111.589 (10) | 123.871 (5) | 104.16 |
| V (Å3) | 1035.0 (7) | 2708.7 (10) | 5376.9 (10) | 1225.18 (18) |
| ρcalc (103 kg m−3) | 1.03 | 0.992 | 0.945 | 1.08 |
| Wavelength (Å) | 1.54178 | 1.54178 | 1.54178 | 1.54178 |
| μ (mm−1) | 1.006 | 0.849 | 0.686 | 0.869 |
| Crystal habit | Needle | Needle | Needle | Needle |
| Crystal size (mm) | 0.8 × 0.08 × 0.02 | 0.5 × 0.05 × 0.05 | 0.4 × 0.02 × 0.02 | 1 × 0.02 × 0.01 |
| Data collection | ||||
| θ range (°) | 4.14–59.9 | 3.93–50.9 | 3.60–40.2 | 4.41–50.7 |
| Absorption correction | Multi-scan (SADABS; Bruker, 2015 ▸) | |||
| T min, T max | 0.2700, 0.7486 | 0.5182, 0.7500 | 0.771, 0.875 | 0.477, 0.991 |
| No. of measured reflections | 5735 | 10 777 | 9647 | 13194 |
| No. of unique reflections | 1124 | 1616 | 1652 | 1300 |
| R int | 0.317 | 0.0887 | 0.0724 | 0.112 |
| Refinement | ||||
| No. of parameters | 95 | 114 | 239 | 118 |
| No. of restraints | 0 | 0 | 84 | 15 |
| wR(F 2) | 0.2709 | 0.2984 | 0.3669 | 0.1613 |
| R[F 2 > 2σ(F 2)] | 0.2178 | 0.0954 | 0.1215 | 0.0574 |
| S | 0.980 | 1.064 | 1.196 | 1.002 |
| Δρmax, Δρmin (e− Å−3) | 0.16, −0.20 | 0.24, −0.20 | 0.22, −0.17 | 0.30, −0.26 |
Figure 9.
Helical chains in (a) NaOEt·2EtOH and (b) NaOnPr·2nPrOH. Colour key: Na violet, O red, C grey and H white. Hydrogen bonds are drawn as dotted light-blue lines. The H atoms of the alkyl groups have been omitted for clarity. In part (b), the disordered propyl groups are represented by their major-occupied atomic positions only.
Figure 10.
The crystal structures of (a) NaOEt·2EtOH (space group P21/c, view direction [010] and displacement ellipsoids at the 50% probability level) and (b) NaOnPr·2nPrOH (space group C2/c, view direction [0
0]). Selected symmetry elements are shown. In both structures, there is a 21 screw axis in the middle of each chain.
Between the ‘tubes’ there are only van der Waals contacts between the alkyl groups. This structure explains the observed needle-like morphology of both compounds, with the needle axes parallel to the chain direction [010]. The weak interactions between the ‘tubes’ allow them to librate around their long axis, which is manifested in the anisotropic displacement parameters of NaOEt·2EtOH (see Fig. 10 ▸ a). In the case of NaOnPr·2nPrOH, the limited crystal quality and the disorder of the propyl groups prevent an interpretation of the displacement ellipsoids.
The corresponding lithium methoxide solvate, LiOMe·2MeOH, is a disolvate, like NaOEt·2EtOH and NaOnPr·2nPrOH, but its structure is different. LiOMe·2MeOH consists of Li4(OMe)4(MeOH)6 tetramers, which are connected through hydrogen bonds via MeOH molecules to form a two-dimensional network. As in NaOEt, the interior layer of this network consists of metal ions and O atoms, whereas the alkyl groups point outwards. These layers are stacked through van der Waals contacts between the methyl groups only.
3.3.2. NaOiPr·5iPrOH
Sodium isopropoxide forms a solvate which contains as many as five molecules of isopropanol per NaOiPr unit. Hence, this structure can be regarded as an isopropanol in which one sixth of the protons of the OH groups are replaced by sodium ions. Correspondingly, the structure of NaOiPr·5iPrOH provides an insight into the structure of liquid isopropanol itself.
The solvate crystallizes in the space group C2/c, with Z = 8. There are two symmetrically independent Na+ ions, both on the twofold axis. Each Na+ ion coordinates to four O atoms of iPrO− and iPrOH moieties (Fig. 11 ▸ a). The H atoms of the OH groups could not be located reliably, as they are probably dynamically disordered. Because of the charge compensation, it is expected that in any instance each Na+ cation is surrounded by one iPrO− ligand and three iPrOH molecules. These Na(iPrO)(iPrOH)3 units are connected by further iPrOH molecules to form a chain along the twofold axis parallel to [010] (see Figs. 11 ▸ a and 11 ▸ b). All isopropanol molecules which are not directly coordinated to sodium have an occupancy of 0.5. All isopropyl groups show disorder.
Figure 11.
(a) The crystal structure of NaOiPr·5iPrOH, showing one chain. The view direction is [001], with the b axis horizontal. Displacement ellipsoids are drawn at the 20% probability level. All iPrOH molecules not directly coordinated to Na have an occupancy of 0.5 only. Dotted lines represent the four independent hydrogen-bond networks. The arrows indicate the crystallographic twofold axis. (b) Selected hydrogen-bond networks in NaOiPr·5iPrOH. (c) The crystal structure of LiOiPr·5iPrOH. The disorder of the iPr groups is not shown. In parts (b) and (c), the H atoms are shown as white spheres in calculated positions. The H-atom positions shown here represent only one possibility; actually, the H atoms are disordered and could not be located experimentally. Minus (−) signs denote the anions.
The geometry of the chain is close to
112/m symmetry (rod group No. 11; Kopský & Litvin, 2010 ▸).
There are four independent hydrogen-bond networks in each chain, each with an occupancy of 0.5 (see Fig. 11 ▸ a). Two of these networks are shown in Fig. 11 ▸ b.
The hydrogen-bond networks are considerably different from those in pure solid isopropanol. Pure isopropanol forms different hydrogen-bond networks, depending on the experimental conditions: the high-pressure polymorph exhibits eight-membered rings, whereas the low-temperature polymorph forms helical chains with local 31 or 32 symmetry (see Fig. 12 ▸) (Ridout & Probert, 2014 ▸). In contrast, the hydrogen-bond network of NaOiPr·5iPrOH contains branching between the alcohol molecules, i.e. alcohol molecules are connected by hydrogen bonds to three other alcohol molecules. There are two different topologies, marked as ‘Motif A’ and ‘Motif B’ in Fig. 11 ▸(b). Motif A is also present in LiOiPr·5iPrOH (Mehring et al., 2002 ▸). Motifs A and B can neither be found in other sodium alkoxide solvates nor in the crystal structures of pure isopropanol. In liquid isopropanol, one could expect to find a mixture of all three motifs, namely, rings, chains and branchings.
Figure 12.
The hydrogen-bond networks of solid pure isopropanol. (a) Eight-membered ring in the high-pressure phase. (b) Threefold screw axis in the low-temperature phase. In both structures, some of the isopropyl groups are disordered.
In NaOiPr·5iPrOH, the hydrogen-bonded chains are surrounded by the nonpolar isopropyl groups. Between the chains, there are only van der Waals contacts between the isopropyl groups (see Fig. 13 ▸). Similarly, in both polymorphs of pure iPrOH, the rings and chains have polar surfaces, and are connected to neighbouring rings or chains by van der Waals interactions (see Figs. S1 and S2 in the supporting information).
Figure 13.
The crystal structure of NaOiPr·5iPrOH (space group C2/c, view along the chains and view direction [0
0]). The chains are located on twofold rotation axes, in contrast to the 21 screw axes for NaOnPr·2nPrOH (see Fig. 10 ▸
b).
The chains of NaOiPr·5iPrOH are arranged in a distorted hexagonal packing. The packing seems to be similar to the chain packing in NaOnPr·2nPrOH. The space group is also the same (i.e. C2/c). However, the chains in NaOiPr·5iPrOH are situated on a twofold rotation axis, whereas the chains of NaOnPr·2nPrOH are placed on a 21 screw axis (see Figs. 10 ▸ b and 13 ▸).
3.3.3. NaOtAm·tAmOH
The X-ray structure analysis revealed that sodium tert-amylate (sodium 2-methyl-2-butanolate, NaOtAm) forms a monosolvate with tert-amyl alcohol (2-methyl-2-butanol). In this structure, neighbouring Na+ ions are bridged by two ligands in the form of a square. The square shares corners with two other squares, leading to chains (see Fig. 14 ▸). Each square is centred by a crystallographic inversion centre. The squares are additionally connected by hydrogen bonds. The H atom engaged in this bond is probably disordered, so that in any instance each square contains one tAmO− anion and one tAmOH ligand, due to electrostatic considerations. The squares form an interplanar angle of 49.8° only, which is apparently caused by the hydrogen bonds. The tert-amyl groups point outwards, as in the other solvates.
Figure 14.
A view of the structure of NaOtAm·tAmOH, with displacement ellipsoids drawn at the 50% probability level. The H atoms of the tert-amyl groups have been omitted for clarity. The light-blue lines denote the hydrogen bonds. The H atom is disordered along the hydrogen bond. The black circles represent crystallographic inversion centres. The red symmetry elements represent the approximated local symmetry of the chain (
2/b11).
The chain has approximately
2/b11 symmetry, which is a nonstandard setting of
2/c11 (rod group No. 7; Kopský & Litvin, 2010 ▸). In the crystal, only the inversion symmetry is maintained in the space-group symmetry P121/n1.
The arrangement of the chains (Fig. 15 ▸) is similar to that in NaOEt·2EtOH (Fig. 10 ▸ a). The space group is also the same (P21/c, here in the P21/n setting). However, in NaOEt·2EtOH, the chains are aligned along the 21 axis, whereas in NaOtAm·tAmOH, the chains contain inversion centres.
Figure 15.
The crystal structure of NaOtAm·tAmOH, viewed along the chains (space group P21/n, view direction [010]), with displacement ellipsoids drawn at the 50% probability level. Selected symmetry elements are shown.
4. Conclusion
In this study, we determined the crystal structures of a series of sodium alkoxides NaOR (R = Et, nPr, nBu and nAm) and of a series of solvates of the composition NaOR·x ROH (R = Et, nPr, iPr and tAm; x = 1, 2 and 5). Surprisingly, the crystal structures were unknown. Only the structures of NaOMe, NaOtBu and NaOMe·2MeOH had been determined previously.
The solvates show a variety of compositions, from the monosolvate NaOtAm·tAmOH via the disolvates NaOR·2ROH (R = Et and nPr) to the pentasolvate NaOiPr·5iPrOH. The solvates were obtained from saturated solutions of the alkoxides in the corresponding alcohols. We did not systematically investigate a variation of compositions, temperature and vapour pressure. Presumably, other solvate phases with different compositions may also exist.
In all the solvated and solvate-free structures, the Na+ ion is coordinated in a distorted tetrahedral geometry to four O atoms. In the solvent-free compounds NaOR, the O atom has five neighbouring atoms: four Na+ ions and the alkyl group. Such a fivefold coordination is quite unusual for organic O atoms. The O atoms in organic compounds generally have a maximum of three or four neighbours, when counting counter-ions, alkyl groups, H atoms and accepted hydrogen bonds. In most crystal structures of alcohols ROH, the O atoms have only three neighbours: one alkyl group, one H atom and one hydrogen bond as acceptor. The overcrowded coordination of the O atoms in sodium alkoxides is the reason why they so readily form solvates. Already with one additional alcohol molecule, the coordination number of oxygen drops from 5 to 4, as can be seen in NaOtAm·tAmOH. Any additional alcohol molecule increases the number of threefold-coordinated O atoms. This stabilization is reflected in the thermal stability of the solvates: to obtain the solvent-free alkoxides, NaOEt·2EtOH must be heated at ambient pressure to about 200 °C and NaOnPr·nPrOH even to about 220 °C (Geuther & Frölich, 1880 ▸). In contrast to sodium alkoxides, the sodium alkanoates RCOO−·Na+ and sulfonates RSO3 −·Na+ rarely form solvates with alcohol or RCOOH molecules. There, the higher number of O atoms provides a sufficient number of donor atoms for the coordination of the Na+ ion, even with higher coordination numbers of Na+, e.g. 6 in CH3COO−·Na+ (Dittrich et al., 2018 ▸) or 6–7 in CH3SO3 −·Na+ (Wei & Hingerty, 1981 ▸).
Four different topologies are present in sodium alkoxides: the alkoxides with linear alkyl chains (R = Me, Et, nPr, nBu and nAm) form layers of Na+ and O− atoms, NaOtBu forms clusters (hexamers and nonamers), NaOMe·2MeOH forms tetramers, which are connected by hydrogen bonds into layers, and the other solvates form chains of differing composition. In all cases, polar and nonpolar regions are clearly separated: the interior of the layers, clusters and chains consist of Na+ and –O− ions and is held together by electrostatic forces, whereas the outer regions are composed of the nonpolar alkyl groups. Neighbouring layers, clusters or chains are connected by van der Waals contacts only. As a result, the chain structures of all the solvates form needles. NaOtBu forms prisms or cubes. For the layer structures of NaOR, a plate-like morphology could be expected.
The compound NaOiPr·5iPrOH differs from pure isobutanol only by the substitution of every sixth proton of an OH group with a sodium cation. The crystal structure exhibits a complicated chain structure with branched hydrogen bonds between the isopropanol molecules. Such branchings are not present in the crystal structures of pure isopropanol, but give an interesting insight into the structural diversity of liquid isopropanol.
Supplementary Material
Crystal structure: contains datablock(s) global, NaOEt, NaOEt2EtOH, NaOnPr, NaOnBu, NaOnAm, NaOiPr_5HOiPr, NaOnPr_2HOnPr, NaOtAm_HOtAm. DOI: 10.1107/S205252062001584X/ne5003sup1.cif
Structure factors: contains datablock(s) NaOEt. DOI: 10.1107/S205252062001584X/ne5003NaOEtsup2.hkl
Structure factors: contains datablock(s) NaOEt2EtOH. DOI: 10.1107/S205252062001584X/ne5003NaOEt2EtOHsup3.hkl
Structure factors: contains datablock(s) NaOnPr. DOI: 10.1107/S205252062001584X/ne5003NaOnPrsup4.hkl
Structure factors: contains datablock(s) NaOnBu. DOI: 10.1107/S205252062001584X/ne5003NaOnBusup5.hkl
Structure factors: contains datablock(s) NaOnAm. DOI: 10.1107/S205252062001584X/ne5003NaOnAmsup6.hkl
Structure factors: contains datablock(s) NaOiPr_5HOiPr. DOI: 10.1107/S205252062001584X/ne5003NaOiPr_5HOiPrsup7.hkl
Structure factors: contains datablock(s) NaOnPr_2HOnPr. DOI: 10.1107/S205252062001584X/ne5003NaOnPr_2HOnPrsup8.hkl
Structure factors: contains datablock(s) NaOtAm_HOtAm. DOI: 10.1107/S205252062001584X/ne5003NaOtAm_HOtAmsup9.hkl
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003NaOEtsup10.cml
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003NaOEt2EtOHsup11.cml
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003sup12.pdf
Acknowledgments
The authors thank Daniel Kratzert (Albert Ludwigs University, Freiburg) for his kind assistance with the refinement of the disordered alkyl groups of NaOiPr·5iPrOH, Ulrich Müller (Philipps University, Marburg) for helpful suggestions for improvement of the Bärnighausen tree, Edith Alig (Goethe University, Frankfurt) for the measurement of numerous powder diagrams, Lothar Fink (Goethe University, Frankfurt) for support with the single-crystal structure determination and excellent maintenance of all of our diffractometers, Tanja Reipen (Clariant, Frankfurt) for providing information on industrial sodium tert-amylate, and Trixi Cronje for assistance with the correction of the English. Open access funding enabled and organized by Projekt DEAL.
Footnotes
For a discussion on the name ‘Rietveld method’ versus the name ‘Loopstra method’, see van Laar & Schenk (2018 ▸).
References
- Aroyo, M. I. (2016). International Tables for Crystallography, Vol. A, Space-group Symmetry, 6th ed. Chester: International Union of Crystallography.
- Bärnighausen, H. (1980). MATCH Commun. Math. Comput. Chem. 9, 139–175.
- Beske, M., Tapmeyer, L. & Schmidt, M. U. (2020). Chem. Commun. 56, 3520–3523. [DOI] [PubMed]
- Blanchard, J.-M., Bousquet, J., Claudy, P. & Letoffe, J.-M. (1976). J. Therm. Anal. 9, 191–203.
- Boher, P., Garnier, P., Gavarri, J. R. & Hewat, A. W. (1985). J. Solid State Chem. 57, 343–350.
- Boultif, A. & Louër, D. (1991). J. Appl. Cryst. 24, 987–993.
- Bruker (2015). APEX3. Bruker AXS GmbH, Karlsruhe, Germany.
- Chandran, K., Nithya, R., Sankaran, K., Gopalan, A. & Ganesan, V. (2006). Bull. Mater. Sci. 29, 173–179.
- Chapuis, G. C. (1992). Symmetry relationships between crystal structures and their practical application, in Modern Perspectives in Inorganic Chemistry, edited by E. Parté, pp. 1–16. Dordrecht: Kluwer Academic Publishers.
- Coelho, A. A. (2018). J. Appl. Cryst. 51, 210–218.
- David, W. I. F., Shankland, K., van de Streek, J., Pidcock, E., Motherwell, W. D. S. & Cole, J. C. (2006). J. Appl. Cryst. 39, 910–915.
- Davies, J. E., Kopf, J. & Weiss, E. (1982). Acta Cryst. B38, 2251–2253.
- Dittrich, B., Bergmann, J., Roloff, P. & Reiss, G. J. (2018). Crystals, 8, 213–224.
- Friedrich, H., Guth, J., Schweinzer, J., Letzelter, T. & Bender, H.-J. (1999). European Patent EP 1086067 B1.
- Geuther, A. (1859). Justus Liebigs Ann. Chem. 109, 71–79.
- Geuther, A. (1868a). Jena. Z. Med. Naturwiss. 4, 16–18.
- Geuther, A. (1868b). Jena. Z. Med. Naturwiss. 4, 241–263.
- Geuther, A. & Frölich, O. (1880). Justus Liebigs Ann. Chem. 202, 288–331.
- Greiser, T. & Weiss, E. (1977). Chem. Ber. 110, 3388–3396.
- Hahn, T. (2005). Editor. International Tables for Crystallography, Vol. A, Space-group symmetry, 5th ed., with corrections. Chester: International Union of Crystallography.
- Hofmann, D. W. M. (2002). Acta Cryst. B58, 489–493. [DOI] [PubMed]
- Hunger, K. & Schmidt, M. U. (2018). In Industrial Organic Pigments, 4th ed. Weinheim: Wiley-VCH.
- Kopský, V. & Litvin, D. B. (2010). Editors. International Tables for Crystallography Vol. E, Subperiodic groups, 2nd ed. Chester: International Union of Crystallography.
- Laar, B. van & Schenk, H. (2018). Acta Cryst. A74, 88–92. [DOI] [PMC free article] [PubMed]
- Lescoeur, H. (1895). C. R. Acad. Sci. 121, 691–692.
- Liebig, J. (1837). Ann. Pharm. 23, 12–42.
- Loopstra, B. O. & Rietveld, H. M. (1969). Acta Cryst. B25, 787–791.
- Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226–235. [DOI] [PMC free article] [PubMed]
- Mehring, M., Berkei, M. & Schürmann, M. (2002). Z. Anorg. Allg. Chem. 628, 1975–1978.
- Müller, U. (2004). Z. Anorg. Allg. Chem. 630, 1519–1537.
- Müller, U. (2006). In Inorganic Structural Chemistry, 2nd ed., ch. 18. Weinheim: Wiley-VCH.
- Müller, U. (2012). In Symmetriebeziehungen zwischen verwandten Kristallstrukturen. Anwendungen der Gruppentheorie in der Kristallchemie. Wiesbaden: Vieweg+Teubner Verlag. [English translation: Symmetry Relationships between Crystal Structures (2013), Oxford University Press.]
- Nekola, H., Olbrich, F. & Behrens, U. (2002). Z. Anorg. Allg. Chem. 628, 2067–2070.
- Østreng, E., Sønsteby, H. H., Øien, S., Nilsen, O. & Fjellvåg, H. (2014). Dalton Trans. 43, 16666–16672. [DOI] [PubMed]
- Ridout, J. & Probert, M. R. (2014). CrystEngComm, 16, 7397–7400.
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
- Wanklyn, J. A. (1869). Ann. Chem. Pharm. 150, 200–206.
- Wei, C. H. & Hingerty, B. E. (1981). Acta Cryst. B37, 1992–1997.
- Weiss, E. (1963). Helv. Chim. Acta, 46, 2051–2054.
- Weiss, E. (1964). Z. Anorg. Allg. Chem. 332, 197–203.
- Weiss, E. & Alsdorf, H. (1970). Z. Anorg. Allg. Chem. 372, 206–213.
- Wheatley, P. J. (1961). J. Chem. Soc. (London), 1961, 4270–4274.
- Wondratschek, H. & Müller, U. (2010). International Tables for Crystallography, Vol. A1, Symmetry Relations between Space Groups, 2nd ed. Chester: International Union of Crystallography.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, NaOEt, NaOEt2EtOH, NaOnPr, NaOnBu, NaOnAm, NaOiPr_5HOiPr, NaOnPr_2HOnPr, NaOtAm_HOtAm. DOI: 10.1107/S205252062001584X/ne5003sup1.cif
Structure factors: contains datablock(s) NaOEt. DOI: 10.1107/S205252062001584X/ne5003NaOEtsup2.hkl
Structure factors: contains datablock(s) NaOEt2EtOH. DOI: 10.1107/S205252062001584X/ne5003NaOEt2EtOHsup3.hkl
Structure factors: contains datablock(s) NaOnPr. DOI: 10.1107/S205252062001584X/ne5003NaOnPrsup4.hkl
Structure factors: contains datablock(s) NaOnBu. DOI: 10.1107/S205252062001584X/ne5003NaOnBusup5.hkl
Structure factors: contains datablock(s) NaOnAm. DOI: 10.1107/S205252062001584X/ne5003NaOnAmsup6.hkl
Structure factors: contains datablock(s) NaOiPr_5HOiPr. DOI: 10.1107/S205252062001584X/ne5003NaOiPr_5HOiPrsup7.hkl
Structure factors: contains datablock(s) NaOnPr_2HOnPr. DOI: 10.1107/S205252062001584X/ne5003NaOnPr_2HOnPrsup8.hkl
Structure factors: contains datablock(s) NaOtAm_HOtAm. DOI: 10.1107/S205252062001584X/ne5003NaOtAm_HOtAmsup9.hkl
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003NaOEtsup10.cml
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003NaOEt2EtOHsup11.cml
Supporting information file. DOI: 10.1107/S205252062001584X/ne5003sup12.pdf

















