Abstract
Bacille-Calmette-Guerin (BCG) has variable efficacy as an adult tuberculosis (TB) vaccine but can reduce the incidence and severity of TB infection in humans. We have engineered modified vaccinia Ankara (MVA) strain vaccine constructs to express the secreted mycobacterial proteins Ag85A and ESAT-6 (MVA-AE) and evaluated their immunogenicity and protective efficacy as mucosal booster vaccines for BCG given subcutaneously in early life. Intranasal delivery of MVA-AE to young adult mice induced CD4+ and CD8+ T cell responses to both Ag85A and ESAT-6 in lung mucosae. These responses were markedly enhanced in mice that had been primed neonatally with BCG prior to intranasal MVA-AE immunization (BCG/MVA-AE), as evidenced by numbers of pulmonary Ag85A-, ESAT-6-, and PPD-specific CD4+ and CD8+ T cells and by their capacity to secrete multiple antimicrobial factors, including IFNγ, IL-2 and IL-17. Moreover, MVA-AE boosting generated multifunctional lung CD4+ T cells responding to ESAT-6, which were not, as expected, detected in control mice given BCG, and elevated Ag85A-specific circulating antibody responses. After aerosol challenge with M. tuberculosis H37Rv (Mtb), the BCG/MVA-AE group had significantly reduced mycobacterial burden in the lungs, compared with either BCG primed mice boosted with control MVA or mice given only BCG. These data indicate that intranasal delivery of MVA-AE can boost BCG-induced Th1 and Th17-based immunity locally in the lungs and improve the protective efficacy of neonatally-administered BCG against M. tuberculosis infection.
Keywords: Neonates, TB vaccination, BCG, recombinant MVA, pulmonary immunity, protection
Introduction
Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb) infection, remains one of the deadliest diseases globally, resulting in an estimated 1.45 million deaths in 2018 alone [1]. The emergence of multi-drug-resistant Mtb strains has rendered the search for effective vaccination strategies even more acute. Bacille-Calmette-Guérin (BCG), the only currently licensed vaccine against TB, fails to provide long-term protection in adults [2], but has shown efficacy in reducing the childhood incidence of pulmonary TB and severe non-pulmonary TB [2, 3] and childhood mortality among both TB-exposed and unexposed children [4]. Since up to 80% of the global population is vaccinated with BCG as neonates or in childhood, any new TB vaccination strategies should take this into account. It should also be noted that the protective efficacy of BCG administered in neonatal life appears to decline over time. While re-vaccination with BCG did not appear to enhance protection against TB in a large-scale clinical study in Brazil [5], partial prevention of Mtb infection, determined indirectly by IFNγ release assay, was recently reported in individuals given BCG in infancy and revaccinated with BCG as adolescents [6].
Several studies in animal models and in humans have shown that priming with BCG followed by boosting with protective antigens, including antigen 85A (Ag85A), which is present in all BCG strains and is highly conserved among circulating Mtb strains, results in increased numbers of antigen-specific CD4+ and CD8+ T cells and enhanced protection against Mtb challenge [7–9]. However, a phase 2 clinical vaccine trial involving a modified vaccinia Ankara strain (MVA) vaccine construct expressing Ag85A given intradermally to infants previously vaccinated with BCG failed to provide protection beyond the limited efficacy of BCG alone [10], despite evidence that the MVA85A vaccine enhanced durable circulating Ag85A-specific T cell responses [11, 12]. Interestingly, MVA85A is in now clinical trials as an aerosol vaccine [13, 14], after earlier indications of its efficacy via this route in animal models of Mtb infection [15, 16].
We have previously shown that DNA or viral vector-based heterologous prime-boost immunization strategies generate sustained immune responses to encoded Mtb antigens in both mucosal tissues and in the spleen, particularly when the booster dose is given mucosally, via the respiratory route [17–20]. Given the renewed interest in respiratory delivery of TB immunogens [13, 14, 21], we have developed a heterologous prime-boost vaccination strategy in a mouse model of acute Mtb infection using neonatal BCG priming via the subcutaneous route followed by intranasal boosting with MVA expressing the secreted M. tuberculosis antigens Ag85A and ESAT-6 (MVA-AE) several weeks later. Our data show that local delivery of MVA-AE can boost both pulmonary and circulating Mtb-specific immunity and improve the protective efficacy of BCG, given shortly after birth, against Mtb infection.
Materials and Methods
Recombinant MVA construction and testing
MVA constructs encoding Ag85A and ESAT-6 were generated as follows using standard molecular cloning techniques for recombinant MVA [22]. A gene fusion encoding Mtb Ag85A (GenBank Acc. No. AY207395.1) upstream of ESAT-6 (GenBank Acc. No. FJ014499.1) was codon-optimized using the Java Codon Optimization Tool (http://www.jcat.de) and manufactured as a synthetic gene by GenScript (Piscataway, New Jersey). The fusion was cloned into the pLW44 transfer vector (provided by L. Wyatt, National Institutes of Health), bringing it under the control of the vaccinia virus (VV) modified H5 early/late promoter and adjacent to the gene encoding GFP regulated by the VV P11 late promoter. Recombinant MVA-Ag85A-ESAT-6 was generated by transfecting pLW44-Ag85A-ESAT-6 into primary chick embryo fibroblast cells infected with MVA (provided by B. Moss, National Institutes of Health). Fluorescent plaques were selected through five rounds of plaque isolation, and seed stock was purified by sucrose gradient centrifugation [22]. The presence of the Mtb gene inserts was confirmed by PCR, and by Western Blot, as described elsewhere [19], using BHK-21 cells (CCL-10, ATCC, Manassas, VA), rabbit anti-mouse anti-Ag85 complex polyclonal antibody, NR-13800 and rabbit anti-mouse anti-ESAT-6 polyclonal antibody, NR-13803 (BEI Resources, Manassas, VA) at 1: 5000 dilution. Recombinant Ag85A, NR-49427 and recombinant ESAT-6, NR-49424 (BEI Resources) were included as positive controls. Control MVA (MVA-c) was generated and tested as above using pLW44 that had not been engineered to encode the Mtb gene fusion.
Mice
All procedures in these studies were conducted under the guidelines of the Institutional Animal Care and Use Committee (IACUC) of Louisiana State University Health Sciences Center (LSUHSC) in accordance with the National Institutes of Health guidelines for the care and use of Laboratory animals. Mice were housed in the AAALAC-accredited LSUHSC Animal Care Facility. Pregnant BALB/c mice were purchased from Charles River (Wilmington, MA) and housed individually. Neonates were weaned and separated according to gender at 3 weeks of age. All Mtb-challenged mice were housed in a Biosafety Level 3 (BSL3) Laboratory operated in accordance with safety precautions recommended by the Centers for Disease Control and Prevention and monitored by the LSUHSC Institutional Biosafety Committee. Invasive procedures were performed under anesthesia with a mixture of KetaThesia (ketamine HCl 100 mg/mL, Butler Animal Health Supply, Dublin, OH) and xylazine (10 mg/mL, Henry Schein, Mandeville, LA) diluted eight-fold in phosphate buffered saline (PBS, Gibco, Invitrogen, Carlsbad, CA).
Immunization
Neonatal BALB/c mice at 4 days of age were immunized subcutaneously with 1 × 106 colony forming units (CFU) of M. bovis BCG, obtained from ATCC (Rockville, MD, catalog #35734). BCG was given in 50μL PBS, while controls were sham immunized with PBS only. Six weeks later, the mice were boosted via the intranasal route with 5 × 107 PFU of MVA vector vaccine resuspended in 20 μL PBS (10 μL given into each nostril). At 12 wk after intranasal MVA boosting, mice were euthanized and spleens and tracheobronchial lymph nodes harvested by gross dissection. Harvested organs were processed into single-cell suspension in complete medium for use in immune assays as described previously [17–19].
Peptides and antigens
Synthetic peptide oligomers representing H-2d -restricted CD4+ T cell epitopes in Ag85A (P1: TFLTSELPGWLQANRHVKPT) [23], and ESAT-6 (eP1: MTEQQWNFAGIEAAASAIQG) [24], or a CD8+ T cell epitope in Ag85A (MPVGGQSSF) [25], were used for restimulation of mononuclear cells in immune assays. All peptides were synthesized by Genscript (Piscataway, NJ). Purified protein derivative (PPD) of Mycobacterium bovis was obtained from the Statens Serum Institut (SSI), Copenhagen, Denmark. Peptides and PPD were used at a final assay concentration of 5 μg/ml.
IFN-γ ELISpot assays
Assays for CD4+ and CD8+ T cell IFN-γ responses were performed as described elsewhere [17, 18]. Data are presented as spot-forming cells (SFCs) per million cells ± SEM.
Intracellular cytokine staining (ICS) assays and tetramer staining
Expression of IL-2, IFNγ and IL-17 by mononuclear cells in response to restimulation by Ag85A and ESAT-6 peptides was assayed by ICS, and data were analyzed using a hierarchical gating strategy, as outlined elsewhere [17, 19]. Fluorochrome antibodies used for staining included CD3-APC-eFluor780 (Invitrogen), CD4-APC, CD8-PE-Cy7, IFNγ-PerCP Cy5.5, IL-17A-PE/Dazzle 594 (all from Biolegend) and IL-2-PE (BD Pharmingen). For tetramer staining, single cell suspensions of 1–2 × 106 cells per well were stained with the fluorescent antibodies CD3e-Pacific Blue and CD8-FITC (BD Pharmingen) and the PE-labeled MVPGGQSSF/H-2d tetramer (MHC Tetramer Production Facility, Baylor College of Medicine, Houston, Texas) for 45 minutes at room temperature. Cells were then washed twice with PBS, fixed, and 200,000 events were acquired on the FACS Canto II (Beckman Coulter).
ELISA
Serum antibody responses to Ag85A and ESAT-6 were measure by ELISA as described elsewhere [19], except that plates were coated with recombinant Ag85A, NR-49427, or recombinant ESAT-6, NR-49424 (BEI Resources). IgG titers were established using a calibration curve generated using known concentrations of mouse IgG.
Aerosolized M. tuberculosis challenge and determination of bacterial load
At 12 weeks after boosting with MVA vectors, mice were challenged with 50–100 CFU of aerosolized M. tuberculosis H3Rv strain (ATCC No. 27294, Rockville, MD) in a BSL-3 laboratory using a GlasCol aerosol infection system (Terre Haute, IN), as described elsewhere [17, 19]. Six weeks later, the mice were euthanized for harvest of lungs and spleens. To determine bacterial loads, harvested organs were homogenized, serially diluted, and plated on Middlebrook 7H10 agar plates containing 10% oleic-acid albumin-dextrose-catalase (OADC – BD, Sparks, MD) and 2 μg/mL of 2-thiophenecarboxylic acid hydrazide (Sigma-Aldrich, St. Louis, MO) to selectively inhibit the growth of residual BCG. The plates were incubated at 37°C for 21 days before colonies were counted.
Statistical analysis
One-way ANOVA with Tukey’s correction for multiple comparisons was used to analyze statistical differences using GraphPad Prism software 9.0. Data are presented as mean values ± SEM. P values ≤ 0.05 were considered statistically significant.
Results
MVA-AE expresses both ESAT-6 and MVA-AE.
Expression of both Ag85A and ESAT-6 by MVA-AE, but not by MVA-c, was confirmed by Western blot (Fig. 1).
Intranasal boosting with MVA enhanced pulmonary and splenic T cell responses and circulating antibody responses in mice primed with BCG as neonates.
Initially, we evaluated the immunogenicity of MVA expressing Ag85A and ESAT-6 proteins of Mtb when given as a pulmonary booster vaccination to mice immunized with BCG in early life. Thus, in each of the experiments described below, mice given BCG subcutaneously at 4 days of age were boosted intranasally with MVA 6 wk later, and 12 wk thereafter, lymphoid cells were harvested from tracheobronchial lymph nodes and spleens for assay.
Intranasal MVA-AE boosting of mice primed with BCG as neonates resulted in a significant increase in numbers of Ag85A-specific CD4+ and CD8+ T cell subsets expressing IFN-γ in pulmonary lymphoid tissues and in spleens compared to animals primed with BCG and boosted with control MVA, or given MVA-AE intranasally without neonatal BCG priming (Fig. 2A). MVA-AE delivery also induced local and splenic subsets of CD4+ T cells that were specific for ESAT-6, a protein that is not expressed by BCG. The use of purified protein derivative (PPD) of Mtb for in vitro restimulation confirmed significantly higher pulmonary anti-mycobacterial T cell responses in BCG-primed neonates boosted with MVA-AE (Fig. 2B).
Ag85A tetramers were used to further evaluate specific CD8+ T cell responses that were readily detectable in lung mucosae and spleens at 12 wk after MVA-AE boosting (Fig. 3). Splenic Ag85A-specific CD8+ T cell numbers were similar in all vaccine groups at around 2-fold higher than in mice given only the control vector MVA-c. However, the BCG/ MVA-AE group had pulmonary mucosal Ag85A-specific CD8+ T cell numbers three-fold greater than this control group, with more moderate increases seen in mice given MVA-AE alone or BCG followed by boosting with MVA-control vaccine.
IgG antibody responses against Ag85A were detected in sera at levels over 100-fold greater in mice boosted IN with MVA-AE at 12 wk after priming with BCG as neonates than in mice boosted with MVA-c (Fig. 4). |IgG responses against ESAT-6 were detected at lower levels after the IN MVAE-booster, as expected, since ESAT-6 is not present in the BCG priming vaccine.
Taken together, these data indicate that intranasal boosting with MVA expressing Ag85A and ESAT-6 enhances both pulmonary and splenic Ag85A-specific T cell responses and circulating antibody responses generated in mice primed neonatally with BCG, with de novo generation of CD4+ T cells responses to ESAT-6 protein expressed only in the booster vaccine.
Intranasal MVA boosting of mice primed neonatally with BCG generates local T cell populations secreting multiple antimicrobial cytokines.
To further evaluate vaccine-induced T cell responses, we used intracellular cytokine staining to characterize the capacity of single cells to express multiple antimicrobial cytokines. It was clear that intranasal MVA-AE boosting of young adult mice that had been primed with BCG as neonates generated significantly higher numbers of Ag85A-specific CD4+ and CD8+ T cells in pulmonary mucosal tissues that were capable of concomitantly expressing IFN-γ, IL-2, and IL-17, compared to mice boosted with control MVA or given only MVA-AE as young adults (Fig. 5). This was also the case for T cell subsets producing IFN-γ/IL-2, IFN-γ/IL-17, or IL-2/IL-17. In addition, gating for CD4+ and CD8+ T cell subsets expressing only one of these factors revealed uniformly greater pulmonary expression of IFN-γ, IL-2 or IL-17 in the BCG/MVA-AE group.
Interestingly, significant increases in ESAT-6-specific pulmonary CD4+ T cells with the same multifunctional characteristics were confirmed in mice primed with BCG and boosted with MVA-AE (Fig. 5). It is possible that the effects of neonatal priming with BCG (lacking ESAT-6) non-specifically enhanced local pulmonary T cell responses to subsequent intranasal immunization with MVA-AE encoding this protein.
While there was no evidence for multifunctional T cell populations in the spleens of immunized mice, significant numbers of Mtb-specific CD4+ and CD8+ T cells expressing IL-2 and CD8+ T cells expressing IL-17 were seen in the BCG/ MVA-AE vaccine group (Fig. 6).
Intranasal MVA boost enhances the protective efficacy of neonatal BCG immunization against pulmonary challenge with virulent M. tuberculosis.
To evaluate the protective efficacy of our vaccine approach, neonates primed subcutaneously with BCG and boosted intranasally with MVA as young adults were challenged with pathogenic Mtb H37Rv in an aerosol chamber at 12 wk after boosting. Bacterial loads in lungs and spleens were determined at 6 wk thereafter (Fig. 7). Neonatal priming with BCG alone reduced bacillary loads in the lungs by 11-fold after aerosol Mtb challenge compared to vehicle control (naïve) mice. Notably, these values were reduced 3-fold further following boosting with MVA-AE (p<0.001), but not with control MVA. While intranasal MVA-AE alone was marginally protective compared to vehicle control mice (p<0.05), as expected neither this construct, nor control MVA, when given alone were effective compared to neonatal BCG/intranasal MVA-AE vaccination. While there was a trend toward reductions in bacterial growth in the spleens of mice given BCG/MVA-AE compared to those given BCG/MVA-control, these differences were not statistically significant.
Discussion
Given increased recent interest in respiratory delivery of TB immunogens [13, 14, 21], we have developed a heterologous prime-boost vaccination strategy in a mouse model of acute Mtb infection using intranasal boosting with MVA vaccine vectors engineered to express the secreted M. tuberculosis antigens Ag85A and ESAT-6 (MVA-AE) in mice primed neonatally with BCG. Our data show that delivery of MVA-AE to the respiratory tract can improve the protective efficacy of BCG given shortly after birth against M. tuberculosis infection, while boosting circulating antibody responses, and Mtb-specific Th1 and Th17-based immunity and CD8+ cytotoxic T cell responses, particularly in the lung mucosae.
Although the neonatal immune system has been characterized as immature, having antigen-presenting cells, T cells and marginal zone B cells in low numbers and/or of reduced functionality, and with a tendency to mount Th2-biased immune responses [26–28], it is clear that neonates are able to mount strong responses to a variety of immunogens including oral polio vaccine [29], hepatitis B vaccine [30], and acellular pertussis vaccine [31]. In addition, while the efficacy of BCG vaccine for protection against Mtb has varied between trials, neonatal BCG vaccination has consistently been associated with a reduced incidence of TB [32] and the generation of strong Th1-type immune responses [33, 34]. Our current data underline the capacity of the neonatal immune system for priming by BCG for strong Th1 and Th17-type anti-mycobacterial immunity in the spleen and lung mucosae and circulating antibody responses, despite its relative immaturity.
A further, widely reported, feature of BCG immunization in early life is the decreased incidence of neonatal and early childhood mortality due to unrelated and antigenically diverse pathogens, termed ‘pathogen agnostic’ protection [4, 30, 35, 36]. In the present study, the construction of MVA-AE, in addition to facilitating vaccination with two immunogenic proteins that are highly expressed by Mtb, also provided the opportunity to assess de novo development of immune responses against ESAT-6. It was notable that neonatal priming with BCG non-specifically enhanced ESAT-6-specific T cell responses to subsequent intranasal immunization with MVA-AE encoding this protein. BCG, which does not express ESAT-6, has been shown to activate non-specific antimicrobial activity of myeloid cells, a phenomenon recently termed ‘trained innate immunity’ [37, 38], and to promote heterologous lymphocyte activation [30, 36, 39], with T cell responses against unrelated bacterial and fungal antigens also enhanced and sustained in adults given BCG [40]. In our study, the marked enhancement of IFN-γ, IL-2 and IL-17 expression by ESAT-6-specific pulmonary CD4+ T cells in mice given BCG/MVA-AE may be reflective of these phenomena and should be beneficial in a vaccine setting, although further studies will be required to evaluate the contribution of such responses to the increased level of protection seen in this vaccine group.
Interleukin-17 appears to play a role in regulating cell-mediated adaptive immunity in TB infection. In humans, mutations in the transcription factor RORγT, crucial for development of IL-17A-producing cells, markedly decreased Mtb-specific IFNγ production by CD4+ CCR6+ αβ T cells and γδ T cells and increased susceptibility to Mtb infection [41]. In mice, adoptive transfer studies showed that Th17 cells could mediate protection against Mtb infection [42], while Th17 cells promote CD4+ T cell recruitment to pulmonary sites of infection, favor granuloma formation, and accelerate pathogen clearance in BCG-immunized mice challenged with Mtb [43, 44], and this process was enhanced by boosting with mycobacterial proteins [45]. IL-17 expression is apparently regulated by IL-23 in driving Th1 cell responses in this system [43, 46], while Mtb infection has been shown to dysregulate STAT3 signaling, selectively impairing production of IL-23 required for the differentiation of IL-23 receptor-expressing Th17 cells [43]. In the present study, it was notable that intranasal boosting of mice given BCG as neonates with MVA-AE significantly enhanced numbers of Mtb-specific CD4+ and CD8+ T cells producing IL-17 in the lung mucosae, including populations that concomitantly expressed combinations of IL-17, IL-2 and/or IFNγ, while markedly reducing Mtb titers recovered from pulmonary tissues after challenge. While CD8+ T cells expressing IL-17 were also numerous in the spleens of these mice, there was no evidence for CD4+ T cells expressing IL-17 or multifunctional CD4+ populations in the spleen, and no significant reduction in splenic Mtb growth, albeit occurring at much lower levels compared to the lungs.
Prime-boost strategies have been widely used in vaccine development, including for TB [21, 47]. While no clear correlates of protection have yet been defined for BCG, there is considerable interest in the development of effective booster vaccines for those previously vaccinated with BCG, given its widespread administration to neonates and children in regions where TB is endemic [4]. Several studies in small animal models of Mtb infection and in humans have shown that priming with BCG followed by boosting with recombinant viral vaccine vectors expressing TB proteins, or with mycobacterial proteins, generated strong CD4+ and CD8+ T cell immunity and enhanced protection against Mtb challenge [7–9, 15, 16, 45]. Data from recent studies in non-human primates have been mixed in this respect. Boosting BCG-primed animals with protein-based, or adenovirus or cytomegalovirus vector-based, Mtb immunogens failed to enhance BCG-mediated protection against Mtb challenge [48, 49], while a recent macaque study clearly demonstrated enhanced protective efficacy following intravenous BCG administration. These animals had markedly elevated levels of pulmonary T cell responses (mostly of the Th1-type but also some contribution from Th17 cells), including evidence for localized tissue-resident memory T cells (TRM), and higher antibody levels in bronchial fluids and plasma, compared to animals vaccinated intradermally or via aerosol [50]. In clinical studies, re-vaccination with BCG failed to enhance protection against TB in a large-scale study in Brazil [5], although a reduced rate of QuantiFERON-TB-Gold assay conversion was seen in subjects in a high-transmission South African setting given BCG in infancy and revaccinated as adolescents with either BCG or H4:IC31, an immunogenic subunit vaccine [6]. An earlier phase 2 clinical vaccine trial involving recombinant MVA vaccine expressing Ag85A given intradermally to infants previously vaccinated with BCG failed to demonstrate protection beyond that mediated by BCG alone [10], despite enhancement of circulating Ag85A-specific T cell responses that were detected for several years [11, 12], while MVA85A is now in clinical trials as an aerosol vaccine [13, 14].
In summary, we have shown that delivery of recombinant MVA vaccine encoding Ag85A and ESAT-6 to the respiratory tract significantly improves the protective efficacy of neonatally-administered BCG against Mtb infection, while boosting BCG-induced Th1 and Th17-based immunity particularly in lung mucosae, and circulating antibody responses. Studies are underway in this system to further characterize both innate and adaptive immune responses, particularly in terms of local pulmonary innate lymphoid cell responses, lung tissue-resident memory T cell (TRM) responses, and local pulmonary antibody responses, and also to assess the protective efficacy of mucosal MVA boosting with other Mtb antigens in this system.
Highlights.
A recombinant poxvirus vaccine encoding Ag85A and ESAT-6 of M. tuberculosis (MVA-AE) was generated.
Respiratory boosting with MVA-AE enhanced protection against TB in mice given BCG as neonates.
Elevated Th1 and Th17 immunity was seen after MVA-AE boosting in lungs of mice given BCG as neonates.
MVA-AE boosting also generated lung CD4+ T cells against ESAT-6, not seen in mice given only BCG.
Acknowledgments
We thank Olga Nichols, Elizabeth Porretta and Robert Kutner for valuable technical assistance, and Drs. L. Wyatt and B. Moss (National Institutes of Health) for providing pLW44 and MVA. We also acknowledge the MHC Tetramer Production Facility, Baylor College of Medicine, Houston, Texas for generating PE-labeled Ag85A tetramers. The following reagents were obtained through BEI Resources, NIAID, NIH: Polyclonal Anti-Mycobacterium tuberculosis Antigen 85 Complex (FbpA/FbpB/FbpC; Genes Rv3804c, Rv1886c, Rv0129c) (antiserum, Rabbit), NR-13800; Polyclonal Anti-Mycobacterium tuberculosis ESAT6 (Gene Rv3875) (antiserum, Rabbit), NR-13803; Ag85A, Recombinant Protein Reference Standard, NR-49427; ESAT-6, Recombinant Protein Reference Standard, NR-49424.
Funding: This work was supported by NIH grants R01 AI058810 (AJR) and 5PO1 HL076100 (AJR), and by the Louisiana Vaccine Center funded by the Louisiana Board of Regents (PKSFI-PRS-02).
Footnotes
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Conflict of interest statement
The authors declare no conflict of interests.
Declaration of interests
The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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