Abstract
Myeloid cells, such as neutrophils, are produced in the bone marrow in high quantities and are important in the pathogenesis of vascular diseases such as pulmonary hypertension (PH). Although neutrophil recruitment into sites of inflammation has been well studied, the mechanisms of neutrophil egress from the bone marrow are not well understood. Using computational flow cytometry, we observed increased neutrophils in the lungs of patients and mice with PH. Moreover, we found elevated levels of IL-6 in the blood and lungs of patients and mice with PH. We observed that transgenic mice overexpressing Il-6 in the lungs displayed elevated neutrophil egress from the bone marrow and exaggerated neutrophil recruitment to the lungs, resulting in exacerbated pulmonary vascular remodeling, and dysfunctional hemodynamics. Mechanistically, we found that IL-6-induced neutrophil egress from the bone marrow was dependent on interferon regulatory factor 4 (IRF-4)-mediated CX3CR1 expression in neutrophils. Consequently, Cx3cr1 genetic deficiency in hematopoietic cells in Il-6-transgenic mice significantly reduced neutrophil egress from bone marrow and decreased neutrophil counts in the lungs, thus ameliorating pulmonary remodeling and hemodynamics. In summary, these findings define a novel mechanism of IL-6-induced neutrophil egress from the bone marrow and reveal a new therapeutic target to curtail neutrophil-mediated inflammation in pulmonary vascular disease.
Keywords: neutrophil, IL-6, pulmonary hypertension, CX3CR1, inflammation
Subject terms: Inflammation, Chemokines, Interleukins
Introduction
Pulmonary hypertension (PH) is a progressive cardiopulmonary disease characterized by elevated mean pulmonary arterial pressure at rest that leads to right ventricular failure, multiorgan dysfunction, and often death. The vascular manifestations of PH are associated with cellular and soluble inflammatory mediators.1,2 Inflammation plays an important role in the establishment of PH.3,4 We have recently shown that in PH, circulating monocytes are recruited to the lungs, differentiate into inflammatory interstitial macrophages, and participate in local lung inflammation and vascular remodeling.5,6 Notably, two molecules, soluble interleukin-6 (IL-6)7,8 and the fractalkine receptor C-X3-C motif chemokine receptor 1 (CX3CR1),6,9,10 which is expressed on the surface of monocytes and macrophages, have been found to be central effectors that regulate the recruitment of these cells to vascular sites of inflammation in PH,11–13 as well as other diseases.14,15
Neutrophils are a vital myeloid subset that are important in vascular remodeling16–18 and are the first cells to infiltrate sites of inflammation.19,20 The neutrophil/lymphocyte ratio in the peripheral blood is a marker of subclinical inflammation and is associated with poor prognosis in patients with pulmonary arterial hypertension (PAH)21,22 and other diseases.16,23,24 Once recruited to sites of inflammation, neutrophils create neutrophil extracellular traps and exacerbate angiogenesis25 and overall PH pathogenesis through different mechanisms, such as myeloperoxidase and elastase production.25–28
Certain aspects of the role of IL-6 in neutrophil trafficking are well documented.29,30 Neutrophil-mediated inflammation, particularly in vascular diseases such as PH, consists of at least three prerequisite steps: (a) exaggerated neutrophil production in the bone marrow or spleen, (b) neutrophil release from the sites of their production into the blood, and (c) the recruitment of neutrophils at sites of injury from the blood.29 Neutrophil production31,32 and recruitment at the sites of inflammation33,34 have been thoroughly studied. In contrast to our relatively advanced understanding of neutrophil production and recruitment, the molecular control of neutrophil egress from the bone marrow into the blood circulation in various vascular disease conditions has been largely understudied. Furthermore, while neutrophils express CX3CR1,35 any neutrophil-specific functions of this molecule have yet to be defined. In PAH, both the present study and published studies13,36,37 suggest that IL-6 is deleterious in PH pathogenesis. Using comprehensive molecular analyses of samples from PAH patients and genetically engineered rodent models of PH, our data identified IL-6 as a crucial trigger that promotes neutrophil egress, which is a process that is dependent upon CX3CR1. Consequently, by defining a crucial mechanism of neutrophil mobilization, this study identified multiple therapeutic targets that are specifically involved in neutrophil-mediated inflammation in pulmonary vascular disease.
Results
Neutrophils are increased in the blood and lungs of hypoxic mice and PH patients
To enumerate neutrophils in the blood of patients suffering from PAH, we used multicolor flow cytometry (Fig. S1A). The number and percentage of neutrophils in PAH blood were increased compared to those in healthy controls (Figs. 1A, S1B, Table S1). However, no significant difference in neutrophil numbers or frequencies was observed between idiopathic and scleroderma-associated PAH patients (Table S1, Fig. S1C). These data were confirmed by computational flow analysis of leukocyte populations in PAH blood vs. control blood (Figs. 1B, C, S2, S3). Furthermore, flow cytometry showed that the frequency and numbers of neutrophils were increased in samples representing multiple subtypes of PH, as defined by the World Symposium on Pulmonary Hypertension (WSPH)38 (Fig. S4). Of note, Group 3 PH patients suffering from lung disease displayed, on average, the highest levels of neutrophils in the blood. Circulating neutrophils in PAH patients consisted of at least three subpopulations phenotypically characterized by the expression of CD16, CD24, and CD14 (Figs. 1D, S5A). These three neutrophil populations were identified as CD16hi CD24lo (Neutro 1), CD16hi CD24hi CD14lo (Neutro 2), and CD16hi CD24hi CD14hi (Neutro 3) (Fig. S5A). All three populations were expanded in frequency and in numbers in the blood of PH patients compared to controls (Fig. S5B). Additionally, varying levels of elastase were found in the three populations of neutrophils (Fig. S5C). Furthermore, these three subpopulations had different inflammatory properties, as shown by gene expression analysis (Fig. S5D). Neutrophil Group 1 (Neutro 1) expressed the highest levels of the chemokine receptors CXCR1, CXCR2, and CXCR4 and cytokines such as IFNB, IL1B, LTB4R, and MPO. Spanning tree progression analysis confirmed the heterogeneity of neutrophils in the blood (Figs. 1E, S6A). These three neutrophil subpopulations were morphologically heterogeneous (Fig. S6B), with neutrophil group 1 exhibiting the lowest number of nuclear lobules and the highest nucleus-to-cytoplasm ratio (Fig. S6C).
Flow cytometry also revealed increased neutrophil accumulation in the lungs of PH patients (Figs. 1F, S7A, B, Supplementary Table 1) and mice with chronic hypoxia-induced PH (Figs. 1G–K, S8A, B). Of note, the 3-week hypoxia time point was found to be associated with the maximum number and frequency of blood and lung-infiltrating neutrophils, as shown by a time course experiment (Fig. S9A, B). These data are congruent with those of ours and others that revealed increased numbers of other myeloid cells, such as monocytes, in the lungs of hypoxic mice starting at day 3 and accumulating up to day 21 of hypoxia exposure.5,6 Similar to circulating neutrophils, we found three neutrophil populations in the lungs of PH patients (Fig. S10A). qPCR showed that these three neutrophil subpopulations expressed varying levels of CX3CR1 (Fig. S10B), with Neutro 1 cells expressing the highest levels. All three neutrophil subpopulations demonstrated increased CX3CR1 expression in PH. In summary, these data suggest increased mobilization of neutrophils from the bone marrow into blood circulation and recruitment to the lungs in PH.
IL-6 levels are elevated in the blood and lungs of hypoxic mice and PH patients
To determine the molecular cues responsible for neutrophil egress from the bone marrow and their subsequent infiltration in the lungs, we measured the levels of inflammatory cytokines and chemokines in the blood and lungs of PAH patients and mice with PH. We observed significantly increased Il-6 mRNA and protein levels in the lungs of hypoxic mice (Fig. 2A) and PAH patients (Fig. 2B) compared to controls. Additionally, elevated levels of IL-6 were found in the blood of hypoxic mice and PAH patients (Fig. 2C). A time course experiment revealed that IL-6 mRNA and protein levels peaked in mice at days 3 and 12 of hypoxia, respectively (Fig. S11).
Il-6 overexpression in mice triggers neutrophilia and worsens PH pathogenesis
To investigate the causative role of IL-6 in neutrophil egress from the bone marrow, we used a transgenic mouse strain that expresses pulmonary-specific Il-6, leading to secondary systemic increases in Il-6.36 Flow cytometric analysis revealed substantial increases in neutrophil numbers and frequencies in the lungs of these transgenic mice (Figs. 3A, S12A, B), which was confirmed by confocal imaging (Fig. 3B). As previously reported,36 these mice displayed increased pulmonary vascular histologic remodeling (Fig. 3B), as well as worsened hemodynamic manifestation of PH, as evidenced by increased right ventricular systolic pressure (RVSP) and right ventricular remodeling (RV/(LV+S) mass ratio or the Fulton index) (Fig. 3C). Additionally, Il-6-transgenic mice displayed increased numbers and frequencies of neutrophils in the blood (Figs. 3D, S12C). Moreover, significant decreases were observed in neutrophil numbers and frequencies in the bone marrow of these mice compared to wild-type control mice (Figs. 3E, S12D), indicating accelerated egress of this granulocyte subset from the bone marrow. Collectively, these data indicate that IL-6 is one of the driving forces of neutrophil egress from the bone marrow and recruitment to the lungs in PH.
Fractalkine receptor (CX3CR1) is necessary for neutrophil egress from the bone marrow
To understand the mechanisms of IL-6-driven neutrophil egress from the bone marrow, we measured the expression of CX3CR1, a chemokine receptor that is important for monocyte recruitment into inflamed tissues and PH,6 in neutrophils. To measure Cx3cr1 expression in neutrophils, we used Cx3cr1 reporter (Cx3cr1GFP/+) mice and measured the GFP mean fluorescence intensity by flow cytometry. We observed that neutrophils expressed Cx3cr1 (Fig. 4A). Computational flow cytometric analysis of lung leukocytes demonstrated that neutrophils (Ly-6ghigh, left panel of Fig. 4B) expressed Cx3cr1 (right panel) at a lower level than monocytes. Additionally, hypoxic mice exhibited increased numbers of Cx3cr1high neutrophils in the lungs after 3 weeks of hypoxia (Fig. 4C). Correspondingly, we found increased proportions of Cx3cr1high neutrophils in the lungs of Il-6-transgenic mice compared to wild-type control mice by confocal imaging (Fig. 4D). Thus, these data support the notion that Cx3cr1-expressing neutrophils may preferentially exit the bone marrow in PH.
To further investigate the role of Cx3cr1 in neutrophil migration from the bone marrow, we generated mice that lacked Cx3cr1 in hematopoietic cells by bone marrow transplantation of wild-type mice with Cx3cr1-null cells, followed by the induction of PH by chronic hypoxia exposure (Fig. 4E). We observed that global or hematopoietic-specific Cx3cr1-deficient mice exhibited decreased frequencies and numbers of neutrophils in the blood compared to those of mice with Cx3cr1-null hematopoietic cells (Fig. 4F). Additionally, the frequency and number of bone marrow neutrophils in Cx3cr1-deficient mice significantly increased, but the ratio of blood to bone marrow neutrophils in these mice substantially decreased (Fig. 4G). To examine neutrophil egress more specifically, we generated mixed chimeric mice by transferring Cx3cr1+/+ bone marrow cells into sublethally irradiated Cx3cr1−/− mice (Fig. 4H) and exposed these mice to hypoxia for 3 weeks. The frequency of donor-derived neutrophils (Cx3cr1+/+) in the blood was significantly higher than that of recipient-derived neutrophils lacking this chemokine receptor (Fig. 4I). Collectively, these data strongly indicate that neutrophils express Cx3cr1, which is necessary for their egress from the bone marrow in hypoxic PH.
IL-6 increases neutrophil-specific CX3CR1 expression via IRF-4
We found that Cx3cr1 mRNA expression was increased in the lungs of Il-6-transgenic mice compared to wild-type control mice (Fig. 5A). Additionally, the levels of Cx3cr1 protein in the bone marrow neutrophils of Il-6-transgenic mice expressing GFP under the Cx3cr1 promoter were increased compared to those of control mice (Fig. 5B), suggesting a role of Il-6 in increasing Cx3cr1 expression. To determine a causative link between these molecules, we differentiated HL-60 cells, a human promyeloblast cell line, into neutrophils and exposed these cells to recombinant IL-6 (Fig. S13A). Consistent with the increased Cx3cr1 expression in neutrophils in Il-6-transgenic mice, increased doses of IL-6 increased CX3CR1 expression at the mRNA and protein levels in the human neutrophil cell line (Fig. 5C), demonstrating that IL-6 augments CX3CR1 expression. These data indicate that neutrophils are capable of responding to IL-6-mediated signaling. To this end, we quantified pSTAT3 and pJAK, which are key factors in IL-6-mediated signaling, especially in cancer biology,39,40 in HL-60 cells treated with IL-6 (Fig. 5D) and pulmonary perivascular neutrophils from mice (Fig. 5E, F) and patients (Fig. 5G) with PH. We observed increased pSTAT3 and JAK expression in these cells.
Ingenuity pathway analysis suggested that Il-6 was associated with Cx3cr1 through two different transcription factors: Stat1 and Irf4 (Fig. 5H). We showed that exposure of differentiated HL-60 cells to IL-6 had a negligible effect on the activation of STAT-1 (p-STAT1) (Fig. S13B). Therefore, we concluded that the regulation of CX3CR1 by IL-6 must occur through a different transcription factor, such as IRF4. Consistently, IL-6 treatment induced the expression of IRF4 in HL-60 cells (Fig. 5I). To discern whether IL-6-induced CX3CR1 expression in neutrophils was IRF4-dependent, we treated differentiated human neutrophils with siRNA against IRF4 and exposed these cells to recombinant IL-6. siIRF4 efficiently inhibited IRF4 expression (Fig. S13C). IL-6-mediated CX3CR1 expression was abolished by siIRF4 treatment (Fig. 5J, K). Ingenuity pathway analysis indicated that STAT3 mediates IL-6-induced IRF4 upregulation. Consistently, knocking down STAT3 expression in HL-60 cells treated with recombinant IL-6 resulted in decreased IRF4 expression in these cells (Fig. 5L). Taken together, these data indicate that IL-6 increases CX3CR1 expression by activating IRF4 expression in neutrophils.
Cx3cr1 deficiency ameliorates IL-6-driven PH
Since Cx3cr1 deficiency decreased neutrophil egress from the bone marrow (Fig. 4) and neutrophils are known to drive PH pathogenesis,2,25,41 we sought to determine whether Cx3cr1 was essential for mediating the effects of IL-6 on PH. Thus, we generated Cx3cr1-deficient Il-6-transgenic mice. When exposed to hypoxia, these mice exhibited significantly fewer neutrophils in the lungs and blood than Il-6-transgenic mice expressing Cx3cr1 (Fig. 6A). Conversely, bone marrow neutrophil levels increased (Fig. 6A), and the proportions of neutrophils in the lungs, blood and bone marrow followed a similar pattern (Fig. S14). These data demonstrate that the absence of Cx3cr1 limits the recruitment of neutrophils to the lungs by increasing their retention in the bone marrow. Hemodynamic parameters of PH, such as elevated RVSP and the Fulton index (Fig. 6B), as well as pulmonary vascular histologic remodeling (Fig. 6C), were also attenuated in Cx3cr1-deficient Il-6-transgenic mice. These alterations were accompanied by decreases in proinflammatory cytokines, such as Ifnb, Il-1b, and Il-18, in the lungs (Fig. 6D). To assess the impact of Cx3cr1 deficiency on neutrophil recruitment in mice that do not overexpress Il6 in pneumocytes, we used Cx3cr1−/− mice. These mice exhibited reduced neutrophil recruitment to the lungs compared that of to Cx3cr1+/+ mice (Fig. S15). This result is consistent with the observation that Cx3cr1 deficiency decreases lung vascular remodeling in hypoxic conditions.6 To further understand the effect of IL-6 on neutrophil recruitment and PH pathogenesis, we housed Il6−/− mice under hypoxic conditions. Hypoxic mice that were deficient in Il6 exhibited fewer blood and lung neutrophils than hypoxic Il6+/+ mice despite similar neutrophil abundances in the bone marrow (Fig. S16A). Correspondingly, Il6−/− mice also exhibited attenuated features of PH, as shown by decreased RVSP and reduced lung remodeling compared to those of Il6+/+ mice (Fig. S16B). Taken together, these data indicate that Cx3cr1 is critical for Il-6-mediated neutrophil egress from the bone marrow and subsequent recruitment into the lungs of mice with PH, resulting in histologic and hemodynamic manifestations of PH in vivo.
Discussion
In summary, our study defines a mechanism of neutrophil egress from the bone marrow in PH that functionally link IL-6 to CX3CR1-dependent activity (Fig. 6E). While the pathogenic role of CX3CR1 has canonically been studied in monocytes and macrophages in PH,2,42–45 our findings identify a unique role for this molecule in neutrophils, significantly extending our mechanistic understanding of how these cells are produced, migrate, and home to sites of pulmonary vascular inflammation in PH. These findings also emphasize the deleterious role of IL-6 in PH pathogenesis by contributing to inflammatory myeloid cell recruitment to the lungs. In contrast, Mickael et al. reported that global genetic ablation of IL-6 and smooth muscle-specific IL-6 receptor deficiency was detrimental to S. mansoni-induced PH.46 A molecular explanation underlying this discrepancy has not fully been elucidated but could be associated with differences in IL-6-dependent neutrophil recruitment. Given that neutrophils appear to play a major role in PH pathogenesis, our findings offer valuable mechanistic insight into the mobilization of these cells during PH pathogenesis, paralleling their importance in other vascular diseases such as atherosclerosis47,48 and rheumatoid arthritis.13,49
Our findings provide important insights into the roles of IL-6 in PH. IL-6 levels have been correlated with right ventricular dysfunction in PH patients.12 In accordance with these results, a recent study showed that upregulation of the IL-6 receptor on the surface of smooth muscle cells promotes their proliferation and contributes to overall vascular remodeling in PAH,13 rendering classic IL-6 signaling a potential therapeutic target for treating patients with PAH.50 As such, a phase II clinical trial using an IL-6 receptor antagonist in patients with PAH is underway.37 Our study adds substantially to these findings by describing the importance of IL-6 in inducing CX3CR1 expression in neutrophils, thus driving egress of these cells from bone marrow. Although it has been reported that neutrophils express IL-6R,51,52 the current study does not investigate the importance of this receptor in neutrophil egress.
Moreover, our work adds to ongoing studies of the pleiotropic role of CX3CR1 in PH pathogenesis. CX3CR1 is the only known receptor of CX3CL1 and is highly expressed by monocytes and macrophages.5,6,53–55 Hypoxic mice lacking Cx3cr1 exhibited less monocyte-mediated inflammation and lung remodeling than hypoxic wild-type mice.6 Our study demonstrated that neutrophils also express CX3CR1, albeit at low levels. Mice deficient in CX3CR1 in hematopoietic cells displayed diminished neutrophil numbers in the lungs. However, it is not clear whether this decreased neutrophil recruitment in the lungs is solely dependent upon neutrophil egress from bone marrow or mediated by the direct reduction in CX3CR1-mediated neutrophil recruitment in the lungs. Nonetheless, we cannot rule out the contribution of other CX3CR1-expressing hematopoietic cells, such as monocytes, to IL-6-mediated exacerbation of PH pathogenesis. Additionally, even though our data reveal that neutrophils greatly depend on Cx3cr1 to exit the BM in the context of PH, other chemokine receptors might be needed for neutrophil egress, as shown by the number of Cx3cr1−/− neutrophils present in the lungs. Future experiments utilizing conditional Cx3cr1 deficiency in specific leukocyte populations will be required to address this question.
In addition to defining the fundamental molecular axis controlling neutrophil egress, our data suggest the potential of characterizing neutrophil subtypes as a diagnostic tool in PH. Within small cohorts of patients recruited at a single center, we found distinct alterations in the number and profile of neutrophils among WSPH PH subtypes, with Group 3 PH patients demonstrating the highest levels of neutrophils in the blood. However, while prior studies have corroborated our findings and shown elevations in blood neutrophil counts in certain PH populations,56,57 it is notable that steady-state neutrophilia is not typical. Future studies encompassing larger cohorts of PH patients (WSPH PH subtypes 1–4) are warranted to define any time-dependence of neutrophil egress during the course of PH development. Nevertheless, our in vivo findings on hypoxic WT mice (representative of WSPH group 3) and Il6tg mice (WSPH group 1) were consistent with previously found results showing elevated neutrophil counts in PH patients. Moreover, given our findings of alterations in neutrophil inflammatory states, coupling neutrophil counts with gene expression profiling could offer an even greater diagnostic or prognostic discernment in PH and should be explored.
Our findings also offer new therapeutic strategies for PH, such as developing neutralizing antibodies against CX3CR1 or IL6-R and/or targeted depletion of IRF4. IRF4 is a transcription factor that belongs to the interferon regulatory factor family (IRF). IRFs are potent regulators of interferon production in response to various infections and inflammation and modulate the production of interferon-inducible genes.58 The interaction between IL6, IRF4, and CX3CR1 has been reported in the literature.59,60 Similar to our observation, Balbanian et al. demonstrated that CD4+ T lymphocytes expressing high levels of CX3CR1 were recruited to the lungs to pulmonary ECs with CX3CL1 expression.61 The mechanism by which leukocyte CX3CR1 expression is increased remains unclear. IL6/IRF4-mediated elevations in CX3CR1 expression, as shown in our study, may be common in both neutrophils and T lymphocytes. Further experiments are warranted to delineate the importance of IL-6 in T lymphocyte recruitment to the lungs in PH. Although a recent report showed alterations in IRF4 expression in PAH patients,62 mechanistic data demonstrating the involvement of IRF4 in PH have been lacking until now. Our study identifies IRF4 as another potential therapeutic target to reduce PH severity, but future preclinical work will be needed to ascertain the efficacy of pharmacologically targeting IRF4 to alleviate PH pathogenesis.
Materials and methods
Human samples and cell storage
Lungs and peripheral blood from PH patients and healthy donors were collected and processed as previously described.63 To define the clinical PH subtype, after hemodynamic identification, third-party expert clinicians reviewed clinical notes and relevant studies to determine the WSPH classification.38 Leukocytes were separated from total blood by a Ficoll gradient as previously described.6
Animals
All animal experiments were conducted according to NIH guidelines under protocols approved by the Institutional Animal Care and Use Committee of the University of Pittsburgh. Adult male and female C57BL/6 wild-type, Cx3cr1GFP/GFP and lung-specific Il-6-overexpressing transgenic mice (10–12 weeks old) were obtained from Jackson Lab. As previously described,6 to induce PH, mice were placed in normobaric hypoxic chambers with 10% O2 for 3 weeks. RVSP was recorded via right heart catheterization as previously described.64 The heart was flushed with 10 mL of PBS, and the right ventricle (RV) was separated from the left ventricle (LV). Both ventricles were weighed, and RV/LV + S (Fulton index) mass ratios were calculated.
Bone marrow reconstitution
To assess the importance of Cx3cr1 expression in neutrophil egress, C57BL/6 wild-type and Cx3cr1GFP/GFP mice were lethally irradiated (10 Gy). Subsequently, each mouse was injected with approximately 1 million bone marrow hematopoietic cells from C57BL/6 wild type or Cx3cr1GFP/GFP mice by i.v. under anesthesia.
Organ harvesting and flow cytometry
Organs were harvested, and single-cell suspensions were prepared as previously reported.6,63 The following panel of antibodies were used to analyze the myeloid cell population in mice: anti-CD45.2 (104), Siglec F (SH2.1), CD11c (N418), CD11b (M1/70), CD115 (AFS98), and Ly6G (1A8). Neutrophils were identified as CD11b+, Ly6G+, and CD115−. The following panel of antibodies was used to analyze the myeloid cell population in humans: anti-CD45 (HI30), CD206 (19.2), CD14 (61D3), CD16 (3G8), and CD24 (ML5). Neutrophils were identified as CD14− CD24low, and CD16+. A Fortessa flow cytometer (BD) was used to acquire the data, which were analyzed with FlowJo software (Tree Star).
Cell sorting, cytospin, and Giemsa staining
Human lung and blood neutrophils were sorted using a FACS Aria II directly in RNA extraction buffer or suspended in FACS buffer. The following panel of antibodies was used to stain the neutrophil population in human samples: CD14 (61D3), CD45 (HI30), CD16 (3G8), and CD24 (ML5). Three neutrophil populations were sorted as CD16hi CD24lo (Neutro 1), CD16hi CD24hi CD14lo (Neutro 2), and CD16hi CD24hi CD14hi (Neutro 3). These neutrophil subpopulations were collected in FACS tubes with caps and centrifuged for 10 min at 1000 rpm. The cells (~50,000) were resuspended in 200 µl of cold 2% FBS-PBS in a 1.5 ml Eppendorf tube. The cells were deposited onto poly-l-lysine-coated “+” slides using a cytospin (800 rpm for 3 min). The cells were then processed for Giemsa staining.
Computational flow cytometry
bh-SNE and PhenoGraph plots depicting murine and human leukocyte subpopulations in the lungs and blood were generated with cyt3 (MATLAB) as previously described.65 Spanning-tree progression analysis of density-normalized events (SPADE) was performed to determine the heterogeneity of circulating leukocytes in PAH patients as previously described.66
Immunofluorescence
Lung sections were prepared and stained as previously described.6 Remodeling scores were assessed in α-SMA–stained vessels (<100 mm in diameter) using ImageJ software by measuring the arterial wall thickness divided by the inner diameter (Fiji), as previously described.64 All measurements were performed in a blinded manner.
Ingenuity pathway analysis
Guided by IPA, we focused on gene sets that were targets of IL-6 signaling. Briefly, we selected IL6 from the list of upstream regulators and CX3CR1 from the gene list and added them to My Pathway. We then selected CX3CR1 and grew a network involving transcriptional regulators. This network displayed all transcription factors that modulated CX3CR1 expression. We then selected all of these transcription factors and IL6 and connected these factors together.
HL-60 cell differentiation and transcription factor inhibition
All-trans retinoic acid (ATRA) (Sigma Aldrich) was dissolved in 100% dimethyl sulfoxide (DMSO) to obtain a 5 mM stock solution. This solution was further diluted to a working concentration of 1 µM. HL-60 cells underwent ATRA-mediated differentiation for 5 days. After 5 days, the medium containing 1 µM ATRA was replaced, and the cells were treated with siRNA against IRF4. Concomitantly, HL-60 cells were treated with 100 ng/mL or 400 ng/mL IL-6. The cells were then incubated at 37 °C for 24 h, after which gene expression was analyzed and apoptosis assays were performed.
Statistical analysis
The data were compiled with Prism software (GraphPad). Statistics were generated and are presented as the mean ± SEM. The normality of the data distribution was determined by Shapiro–Wilk tests. For normally distributed data, statistical significance between two categories of analyzed samples was calculated using two-tailed Student’s t tests. For multiple category comparisons, one-way ANOVA was used with a post hoc Bonferroni test. Differences with P values <0.05 were considered statistically significant.
Ethical approval
All experimental procedures involving the use of human lung tissue included the relevant receipt of written informed consent and were approved by the Committee for Oversight of Research and Clinical Training Involving Decedents (no. 101) at the University of Pittsburgh, as well as the Institutional Review Board of the University of Pittsburgh (no. REN17020169/IRB020810) and the Institutional Review Board at Boston Children’s Hospital. All experimental procedures involving the use of human peripheral blood included the relevant receipt of written informed consent and were approved by the Institutional Review Board of the University of Pittsburgh (no. REN16070123/PRO11070366), as well as the Institutional Review Board of the University of Pittsburgh (no. REN17030011/IRB0306040). Ethical approval for this study and informed consent conformed to the standards of the Declaration of Helsinki.
Supplementary information
Acknowledgements
This work was supported by National Institute of Health grants R00HL12076, R01HL143967, and R01HL142629 to P.D.; NIH grants R01 HL124021, HL 122596, HL 138437, and UH2/UH3 TR002073; and the American Heart Association Established Investigator Award 18EIA33900027 to S.Y.C.; the AHA Transformational Project Award (19TPA34910142), AHA Innovative Project Award (19IPLOI34760566) and ALA Innovation Project Award (IA-629694) to P.D.; the VMI Postdoctoral Training Program in Translational Research and Entrepreneurship in Pulmonary and Vascular Biology T32 funded by the National, Heart, Lung and Blood Institute (NHLBI) to J.F.; the AHA postdoctoral fellowship award 20POST35210088 to S.B.V.; the American Heart Association Grant 19CDA34730030 to R.K.; and NIH Grants and R01HL135872 to B.B.G. We thank the NIH-supported microscopy resources at the Center for Biologic Imaging (NIH grant 1S10OD019973-01). We thank the Center for Organ Recovery & Education (CORE) as well as organ donors and their families for the generous donation of tissues used in this study.
Author contributions
J.F. conducted experiments, analyzed the data, and wrote the paper. J.Z., Y.Y.T., R.K., L.S., B.K., and B.B.G. conducted experiments. S.B.V., S.P.O.N., A.A., G.C.B., L.S., and B.K. conducted experiments and analyzed the data. A.W., J.S., and M.R. recruited patients and provided peripheral blood and lung samples from healthy donors and PAH patients. S.Y.C. and P.D. designed the research study, analyzed the data, and composed the paper.
Competing interests
S.Y.C. has served as a consultant for Zogenix, Aerpio, and United Therapeutics. S.Y.C. holds research grants from Actelion and Pfizer. S.Y.C. has filed patent applications regarding the targeting of metabolism in PH. The authors declare no other competing interests.
Footnotes
These authors contributed equally: Stephen Y. Chan, Partha Dutta.
Contributor Information
Stephen Y. Chan, Email: chansy@pitt.edu
Partha Dutta, Email: duttapa@pitt.edu.
Supplementary information
The online version of this article (10.1038/s41423-020-00608-1) contains supplementary material.
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