Table 3.
Genome-to-genome distance estimates for eukaryotic genera
| Fungi | Distance: Scale: 0 to 1 | Distance: Scale: 0 to 1 |
|---|---|---|
| Ascomycota interspecific distance | Metschnikowia bicuspidata (crab parasite) | Metschnikowia fruticola |
| Metschnikowia bicuspidata yeast cell (Mby) (Daphnia pulex parasite used in this study) | 0.191 | 0.168 |
| Zoopagomycota intergeneric distance | Piptocephalis cylindrospora | Dimargaris cristalligena |
| Dimargaris cristalligena | 0.163 | |
| Syncephalis pseudoplumigaleata | 0.140 | 0.047 |
| Thamnocephalis sphaerospora | 0.160 | 0.167 |
| Piptocephalis cylindrospora | 0.163 | |
| Chytridiomycota Intergeneric distance | Cpi | Batrachochytrium dendrobatidis |
| Caulochytrium protostelioides isolate (Cpi) | 0.172 | |
| Blyttiomyces helices | 0.159 | 0.120 |
| Interphylum distance | Cpi (Chytridiomycota) | Batrachochytrium dendrobatidis (Chytridiomycota) |
| Rozella allomycis (Cryptomycota) | 1.000 | 0.145 |
| Mby (Daphnia pulex parasite used in this study) (Ascomycota) | 0.317 | 0.139 |
| Dimargaris cristalligena (Zoopagomycota) | 0.217 | 0.131 |
| Thamnocephalis sphaerospora (Zoopagomycota) | 0.200 | 0.160 |
| Piptocephalis cylindrospora (Zoopagomycota) | 0.200 | 0.141 |
| Syncephalis pseudoplumigaleata (Zoopagomycota) | 0.199 | 0.127 |
| Cilliate protists | Distance: scale: 0 to 1 | |
| CiPr_NSBU | 0.013 | |
| CiPr_NSBW | 0.013 | |
| CiPr_NSBX | 0.012 | |
| CiPr_NSBY | 0.012 | |
| CiPr_NSCG | 0.012 | |
| CiPr_NSCA | 0.012 | |
| CiPr_Co-assembly | 0.038 | |
| Astramina rara GCA_000211355.2_ASM21135v2_genomic | 0.086 | |
| Param_tetraurelia GCF_000165425.1_ASM16542v1_genomic | 0.134 | |
| Param_biaurelia GCA_000733385.1_ASM73338v1_genomic | 0.136 | |
| Param_sexaurelia GCA_000733375.1_ASM73337v1_genomic | 0.136 | |
| Sterkiella GCA_001273305.2_ASM127330v2_genomic | 0.142 | |
| Sphaeroforma GCF_001186125.1_Spha_arctica_JP610_V1_genomic | 0.158 | |
| Reticulomyxa GCA_000512085.1_Reti_assembly1.0_genomic | 0.161 | |
| Ichthyophthirius multifiliis GCF_000220395.1_JCVI-IMG1-V.1_genomic | 0.162 | |
| Naegleria_fowleri_1.0 GCA_000499105.1_genomic | 0.168 | |
| Tetra_borealis_V1 GCA_000260095.1_genomic | 0.178 | |
| Param_caudatum GCA_000715435.1_43c3d_assembly_v1_genomic | 0.179 | |
| Euglena gracilis GCA_001638955.1_Euglena_mito_Newbler_genomic | 0.180 | |
| Tetrahymena_thermoph GCF_000189635.1_JCVI-TTA1-2.2_genomic | 0.181 | |
| Trypanosoma GCA_000227375.1_ASM22737v1_genomic | 0.190 |
Whole-genome distance was estimated using genome-to-genome distance calculator (GGDC), formula 2 (Meier-Kolthoff et al., 2013). For the intraspecific distance estimates see Figure 6. Species names: CiPr, ciliate protist from compost followed by unique single-cell genome identifier. Ciliate genomes retrieved from NCBI have their NCBI genome identifier after species name.