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Plant Biotechnology Journal logoLink to Plant Biotechnology Journal
. 2020 Nov 22;19(4):745–756. doi: 10.1111/pbi.13501

Plant‐made dengue virus‐like particles produced by co‐expression of structural and non‐structural proteins induce a humoral immune response in mice

Daniel Ponndorf 1, Yulia Meshcheriakova 1, Eva C Thuenemann 1, Albor Dobon Alonso 2, Ross Overman 2, Nicholas Holton 2, Stuart Dowall 3, Emma Kennedy 3, Martin Stocks 4, George P Lomonossoff 1, Hadrien Peyret 1,
PMCID: PMC8051607  PMID: 33099859

Summary

Dengue virus (DENV) is an emerging threat causing an estimated 390 million infections per year. Dengvaxia, the only licensed vaccine, may not be adequately safe in young and seronegative patients; hence, development of a safer, more effective vaccine is of great public health interest. Virus‐like particles (VLPs) are a safe and very efficient vaccine strategy, and DENV VLPs have been produced in various expression systems. Here, we describe the production of DENV VLPs in Nicotiana benthamiana using transient expression. The co‐expression of DENV structural proteins (SP) and a truncated version of the non‐structural proteins (NSPs), lacking NS5 that contains the RNA‐dependent RNA polymerase, led to the assembly of DENV VLPs in plants. These VLPs were comparable in appearance and size to VLPs produced in mammalian cells. Contrary to data from other expression systems, expression of the protein complex prM‐E was not successful, and strategies used in other expression systems to improve the VLP yield did not result in increased yields in plants but, rather, increased purification difficulties. Immunogenicity assays in BALB/c mice revealed that plant‐made DENV1‐SP + NSP VLPs led to a higher antibody response in mice compared with DENV‐E domain III displayed inside bluetongue virus core‐like particles and a DENV‐E domain III subunit. These results are consistent with the idea that VLPs could be the optimal approach to creating candidate vaccines against enveloped viruses.

Keywords: virus‐like particles, dengue virus, Flavivirus, Nicotiana benthamiana, transient expression, antigen display, bluetongue virus CLPs

Introduction

Dengue virus (DENV) is a pathogenic virus that belongs to the family Flaviviridae. Four DENV serotypes (1–4) are currently recognized, all of which are transmitted by Aedes mosquitoes and which cause an estimated 390 million DENV infections per year (Bhatt et al., 2013). While the majority of infections are asymptomatic, DENV can also cause severe health problems including dengue haemorrhagic fever and dengue shock syndrome, which can be fatal (Halstead, 2007). DENV infection of cells occurs via receptor‐binding, uptake of the virus into the cell via endocytosis and release of the viral genome into the cytosol (Rodenhuis‐Zybert et al., 2010). The viral genome consists of a single strand of positive‐sense RNA, encoding a polyprotein containing three structural proteins (SP) and seven non‐structural proteins (NSP). The SPs include the capsid (C), the precursor membrane (prM) and the envelope (E) protein. Upon co‐translational translocation into the endoplasmic reticulum (ER), the polyprotein is proteolytically cleaved by host proteases (signal peptidases and furin) and the virus‐encoded non‐structural protein complex, NS2B‐NS3 (Hasan et al., 2018; Lindenbach, 2007). After cleavage of the polyprotein, the immature virions assemble in the ER lumen. NS2A recruits the viral RNA, structural proteins and the protease NS2B‐NS3 to the site of virion assembly and coordinates nucleocapsid and virion formation (Xie et al., 2019). After cleavage of the polyprotein, the nucleocapsid is formed and buds into the ER lumen. After assembly, the immature virions contain the nucleocapsid, prM, E and the host‐derived lipid membrane. Maturation occurs in the secretory pathway via the Golgi and the trans‐Golgi network by acidification‐dependent conformational changes and furin cleavage of prM. After the virion is released to the extracellular milieu, pr is released, resulting in a mature virion with an icosahedral‐like symmetry and a size of about 50 nm (Li et al., 2008).

Aside from traditional prevention of infection based on vector control, Sanofi Pasteur’s Dengvaxia (CYD‐TDV), a tetravalent vaccine based on chimaeric live yellow fever virus displaying DENV prM‐E, is licensed in 20 countries. However, it is controversial due to concerns regarding vaccine safety in young, seronegative patients due to antibody‐dependent enhancement (ADE) of infection (WHO, 2018). Because of this, much effort has been invested to improve the current DENV vaccine or to develop alternatives, in such a manner as to avoid triggering ADE and instead providing strong immune protection against all four serotypes. Strategies include the development of DNA vaccines, the use of live attenuated DENV and the production of DENV virus‐like particles (VLPs), DENV‐E domain III (EIII) subunits and the presentation of DENV‐EIII on chimaeric VLPs (Bhamarapravati and Sutee, 2000; Galula et al., 2014; Gottschamel et al., 2016; Kanagaraj et al., 2011; Metz et al., 2018; Pang et al., 2019; Ramasamy et al., 2018; Urakami et al., 2017; Zhang et al., 2011). As reviewed by Fuenmayor et al. (2017), out of all these strategies, the use of VLPs appears to be the most promising one because VLPs show advantages with regard to safety and efficacy compared with other strategies. In line with this, Boigard et al. (2017) showed for Zika virus, a close relative of DENV, that a VLP‐based candidate vaccine led to a higher titre of neutralizing antibodies in mice compared with an inactivated virus reference vaccine. The use of VLPs that contain the whole DENV‐E protein is further beneficial compared with EIII presentation, because production of neutralizing antibodies to a DENV infection is not limited to EIII in humans. Instead, binding of neutralizing antibodies to quaternary epitopes of the E protein has been described (de Alwis et al., 2012; Wahala et al., 2009).

Immunogenic DENV VLPs have previously been produced by expression of DENV prM‐E constructs in various expression systems such as mammalian cells (Metz et al., 2018; Urakami et al., 2017; Zhang et al., 2011), insect cells (Charoensri et al., 2014) and Pichia pastoris (Mani et al., 2013; Sugrue et al., 1997). Compared with these expression systems, the use of plants as a production platform for pharmaceutical products offers potential advantages regarding safety, cost‐effectiveness and appropriate post‐translational modifications (Lico et al., 2012; Ma et al., 2005; Ma et al., 2003; Twyman et al., 2003). Various non‐enveloped VLPs such as bluetongue virus (BTV) (Thuenemann et al., 2013), hepatitis B core antigens (HBcAg) (Mechtcheriakova et al., 2006; Peyret et al., 2015), norovirus (NV) (Mathew et al., 2014), poliovirus (PV) (Marsian et al., 2017) and nervous necrosis virus (NNV) (Marsian et al., 2019) have been successfully produced using transient expression in Nicotiana benthamiana. In the case of BTV, PV and NNV, the plant‐produced VLPs have been shown to be capable of providing protective immunity. There are fewer examples of the plant‐based production of VLPs of enveloped viruses, though enveloped influenza virus VLPs presenting haemagglutinin have been produced and represent the first plant‐based VLP candidate vaccine in phase III clinical trials (Medicago Inc. Quebec, Canada) (D'Aoust et al., 2008; Lomonossoff and D'Aoust, 2016).

In this work, we analyse the potential of plants for the production of enveloped DENV VLPs, using the pEAQ‐HT expression system (Sainsbury et al., 2009) in Nicotiana benthamiana. We compared the expression of a prM‐E construct, as used in other expression systems, with the co‐expression of structural protein (C‐prM‐E) and a NS5‐truncated version of NSP. For the first time, we could show that enveloped DENV1 VLPs can be purified after assembly in plants. The humoral immune response to DENV1 VLPs was analysed and compared with DENV‐EIII‐presenting BTV core‐like particles (CLPs) and a recombinant DENV‐EIII subunit in a mouse model. We show that VLPs induced a stronger B‐cell response than BTV‐CLPs displaying EIII and the EIII subunit alone, which is consistent with the idea that VLPs are more efficient than the other strategies in this regard.

Results

To produce DENV VLPs in N. benthamiana, we utilized two main strategies: expression of just a prM‐E construct (denv1‐prM‐E), which has been shown to lead to the formation of immunogenic subviral particles for different flaviviruses in various expression systems without the presence of NSP (Garg et al., 2017; Mason et al., 1991; Pincus et al., 1992; Takahashi et al., 2009), and the co‐expression of the whole SP (denv1‐sp) and a NS5‐truncated version of NSP (denv1‐nsp). The NS5 replicase gene was almost entirely deleted for biosafety reasons, to ensure that there was no risk of viral replication in any downstream experiment. For the second strategy, several constructs of denv‐sp were analysed (Figure 1). Along with the unmodified sequence, we introduced two modifications in the DENV‐E protein, which improved the secretion of DENV VLPs in other expression systems: a point mutation that replaces phenylalanine (F) with alanine (A) at position 108 in the fusion loop structure of the E protein (denv1‐sp‐f108a) as described by Urakami et al. (2017); and a combination of the point mutation and the replacement of the stem/anchor region of DENV1‐E with the corresponding sequence of Japanese encephalitis virus (JEV) (denv1‐sp‐f108a‐jev) (Chang et al., 2003; Hsieh et al., 2008).

Figure 1.

Figure 1

Organization of the DENV polyprotein and expression constructs used in this study (size of protein regions is not to scale). Top: Full DENV polyprotein containing the structural proteins (SP): capsid (C) in yellow, precursor membrane (prM) in green and light green and envelope (E) in cyan, and the non‐structural proteins (NSP) NS1 to NS5. Cleavage sites within the polyprotein are shown as triangles: NS3 = brown triangles, Furin = red and signal peptidase = purple. We expressed the full SP encoding the C, prM and E (denv1‐sp); a prM‐E construct (denv1‐prM‐E) containing the anchor region between C and prM (dashed region) and the NS3 cleavage site; denv1‐sp‐f108a, a version of SP carrying a F108A point mutation in the fusion loop of DENV‐E (*) and a version of denv1‐sp‐f108a in which we replaced the stem/anchor region of DENV‐E with the homologous sequence of Japanese encephalitis virus (grey shades in denv1‐sp‐f108a‐jev). Apart from denv1‐prM‐E, all constructs were co‐expressed with a NS5‐truncated version of the non‐structural proteins (NSP) (denv1‐nsp). For transient expression in Nicotiana benthamiana, all constructs were cloned into the pEAQ‐HT expression vector via AgeI and XhoI cloning sites (Sainsbury et al., 2009). RB: right border, LB: left border, p35S: cauliflower mosaic virus 35S promotor, CPMV: cowpea mosaic virus, UTR: untranslated region, NOS‐T: nopaline synthase terminator, p19: RNA silencing suppressor, 35S T: cauliflower mosaic virus 35 S terminator, neomycin phosphotransferase II (kanamycin resistance).

Expression analysis of DENV constructs

To analyse whether DENV proteins can be expressed in plants and are released into the total soluble protein (TSP) fraction, N. benthamiana plants were agroinfiltrated with the respective constructs (Figure 1) and harvested at 6 days post‐inoculation (dpi). The insoluble fraction (pellet) and the TSP were separated by centrifugation and analysed for the presence of prM and E by Western blot analysis with antibodies against prM and E, respectively.

As shown in Figure 2, we observed different expression patterns between the individual constructs and construct combinations that were mainly influenced by the presence of the non‐structural proteins. Figure 2a shows that the prM moiety is only detected in the total soluble protein fraction when denv1‐nsp is co‐expressed with denv1‐sp. Moreover, we detected two sizes of DENV‐E of about 49 and 55 kDa, respectively (Figure 2a). The expected size of the glycosylated E protein is ~55 kDa, so we hypothesized that the 49 kDa form might be a non‐glycosylated version of E, or a degradation product. Because the 55 kDa version could be detected in the TSP only after co‐expression of denv1‐nsp, incorrect processing of the E protein in the absence of NSP seems likely. This might also be the case for denv1‐prM‐E (Figure 2b), which was not co‐expressed with denv1‐nsp and led to the detection of only the 49 kDa fragment of E, and no detection of prM at all. By contrast, the prM moiety could be detected in the TSP after expressing denv1‐sp‐f108a in the presence of denv1‐nsp, but not after expressing denv1‐sp‐f108a‐jev, regardless of the presence of NSP (Figure 2c). The detected size of 18 kDa in all cases where prM is detected indicates that this protein is not cleaved to pr and M (each ~9 kDa) in plants, most likely due to the lack of furin in N. benthamiana (Wilbers et al., 2016).

Figure 2.

Figure 2

Western blot of DENV expression analysis in N. benthamiana. Uncropped versions of the Western blots are shown in Figure S2. Leaves were harvested 6 days post‐inoculation and analysed as described in Materials and methods. Primary antibodies against DENV‐E (upper row) and DENV prM (lower row) were used to detect the respective proteins. SeeBlue Plus2 pre‐stained protein standard was used as a marker. Band sizes are indicated in kDa. pEAQ‐HTgfp (gfp) was used as negative control. (a) Co‐expression of pEAQ‐HT‐denv1‐sp and pEAQ‐HT‐denv1‐nsp. The non‐structural proteins are required to release prM (~18 kDa) in the soluble fraction. E occurs at 55 and 49 kDa. The 55 kDa size is only visible in the TSP after co‐expression of pEAQ‐HT‐denv1‐nsp, indicating aberrant processing in the absence of NSP. (b) pEAQ‐HT‐denv1‐prM‐E led to no detection of prM and the release of E in the TSP in the 49 kDa form. (c) Vertical line within blot separates TSP and pellet fraction for better visualization. PrM and a 55 kDa version of E can be detected in the TSP after co‐expression of pEAQ‐HT‐denv1‐sp‐f108a and pEAQ‐HT‐denv1‐nsp. For pEAQ‐HT‐denv1‐sp‐f108a‐jev, no proteins could be detected in the TSP, indicating a negative influence of the JEV sequence on SP solubility.

In contrast to prM, the E protein could be detected for all constructs expressed in the presence of NSP, though size and solubility of the detected E protein varied between E‐expressing constructs. Without co‐expression of denv1‐nsp, we could not detect the E protein from expression of denv1‐sp‐f108a or denv1‐sp‐f108a‐jev (Figure 2c). While the presence of NSP led to the release of E into the TSP for denv1‐sp‐f108a, the protein remained insoluble for denv1‐sp‐f108a‐jev, indicating a negative influence of the JEV sequence on protein processing and solubility in plants. Uncropped images of the original Western blots shown in Figure 2 can be found in Figure S2.

These results show that DENV1 structural proteins can be expressed successfully in plants and that the presence of NSP has a substantial influence on the SP. This is consistent with NS3 and NS2B (at least) being processed and proteolytically active in plants, because the activity of NS3 depends on the presence of NS2B (Falgout et al., 1991, Perera and Kuhn, 2008).

Since the expression of full‐length SP together with NSP gave the most promising results at this stage, we analysed the same strategy with DENV serotypes 2 and 4. However, we could not detect any protein expression for either serotype (Figure S1).

Purification and characterization of DENV1 VLPs

To determine whether the expression of denv1‐prM‐E and the co‐expression of denv1‐nsp with denv1‐sp or denv1‐sp‐f108a led to the formation of VLPs, a three‐step ultracentrifugation‐based purification protocol (shallow sucrose gradient, glycerol gradient and long sucrose gradient) was developed as described in Materials and Methods. Transmission electron microscopy (TEM) analysis with negative staining revealed the assembly and formation of VLPs after co‐expression of denv1‐sp and denv1‐nsp. These particles varied in size from 25 to 40 nm and looked comparable to a DENV2 VLP‐positive control produced in mammalian cells (Figure 3), which showed a similar variation in size. The size of the VLPs and the presence of uncleaved prM suggest that the purified VLPs did not undergo the maturation process. TEM analysis of DENV1‐prM‐E showed more impurities and fewer particles than DENV1‐SP. The DENV‐SP‐F108A‐JEV samples showed a high background of plant‐derived impurities and the presence of VLPs could not be confirmed unequivocally, though some VLP‐like structures were seen (Figure 3).

Figure 3.

Figure 3

TEM analysis of purified samples: samples were negatively stained with 2% (w/v) uranyl acetate as described in Materials and methods. Magnifications of pictures is shown on the bottom left. Scale bars on the bottom right are 100 nm each. Particles for DENV1‐SP + NSP (top left) look comparable to a DENV2 VLP‐positive control (top right). DENV1‐prM‐E and DENV1‐SP‐F108A + NSP were less convincing due to the presence of plant‐derived impurities, but VLP‐like structures are visible in the sample (white arrows).

To further characterize the VLPs, we used PNGase F to determine whether the purified particles are glycosylated. DENV‐E protein contains two N‐linked glycosylation sites at positions N67 and N167. Mondotte et al. (2007) showed that deglycosylation of either site leads to a visible size shift in a Western blot (Mondotte et al., 2007). We estimated the expected size shift of deglycosylation from 55 kDa to about 49 kDa using a mammalian cell‐produced VLP‐positive control (Figure 4). Treatment with PNGase F led to a size shift in the control and for DENV1‐SP‐F108A, but not for DENV1‐prM‐E, which indicates that the E protein is not glycosylated in the latter case. For DENV1‐SP, the 55 kDa E band shows a shift to about 50 kDa after PNGase F treatment, while the 49 kDa band retains the same size. This indicates that the co‐expression of denv1‐sp and denv1‐nsp results in VLPs that contain a mixture of glycosylated and non‐glycosylated E protein. A proteolytically cleaved version of the E protein that is not susceptible to deglycosylation because of loss of N67 and N167 would have an estimated size of 37 kDa. Therefore, it is unlikely that the 49 kDa is a product of proteolysis.

Figure 4.

Figure 4

Deglycosylation of DENV1‐VLPs using PNGase F. Samples were treated under non‐denaturing conditions with (+) and without (−) PNGase F for 24 h at 37 °C. Size shift of bands indicates removal of N‐glycans at position N67 and/or N167 of the E protein. The expected size of the deglycosylated E protein is about 49 kDa. C+: Commercial DENV2 VLPs produced in mammalian cells.

The size difference between the commercial, mammalian cell‐derived DENV control and the plant constructs before treatment is likely caused by differences in glycosylation between the two expression systems.

Antigen display inside of bluetongue virus core‐like particles and design of an E domain III subunit

Since we could not produce VLPs for other DENV serotypes, and presentation of a DENV‐EIII domain on hepatitis B core antigen VLPs previously led to antibody production in mice (Pang et al., 2019), we analysed EIII display as a possible alternative to a VLP approach. In an attempt to provide improved T‐cell‐based immunity, packaging of the antigen on the inner surface of a VLP was explored, as the antigen should be protected until autophagy by antigen‐presenting cells, thereby allowing efficient presentation. Therefore, we displayed the EIII ectodomain of DENV1, DENV4 and Zika virus on the inner surface of BTV core‐like particles (B‐CLPs) by N‐terminal fusion of the antigen to bluetongue VP3 (Thuenemann and Lomonossoff, 2018, Charpilienne et al., 2001). Unmodified B‐CLPs and B‐CLPs presenting the EIII domain of DENV1, DENV4 and Zika were expressed in plants, and purified and analysed by TEM, SDS‐PAGE and mass spectrometry. We could show that integration of the EIII did not prevent VLP assembly (Figure S3) and confirmed integration of the respective antigens by mass spectrometry (Figure S4) and a visible size shift of VP3 in SDS‐PAGE (Figure 5).

Figure 5.

Figure 5

Analysed candidate vaccines and Coomassie‐stained SDS‐PAGE control: The respective vaccine candidates were expressed in plants, purified and analysed by SDS‐PAGE. DENV1‐VLPs were produced by co‐expressing DENV1‐SP and NSP. SDS‐PAGE shows signals for prM (18 kDa) and E (~55 kDa). Empty bluetongue core‐like particles (BTV‐CLPs) as negative control (c‐) were produced by co‐expression of BTV VP3 (103 kDa) and VP7 (39 kDa). For antigen display inside BTV‐CLPs, the E domain III (EIII) of DENV1, DENV4 and ZIKA was fused to the N terminus of BTV‐VP3. Co‐expression of BTV‐VP3 and V7 leads to assembly of CLPs and integration of the N‐terminal fused antigens. The Coomassie‐stained SDS‐PAGE shows the size difference between c‐ VP3 and VP3 fused to EIII. The EIII soluble subunit (14 kDa) showed the expected size of 14 kDa and high purity.

To compare the VLP approach to a soluble subunit antigen strategy, we also produced a histidine‐tagged DENV1 EIII subunit. The peptide was translocated to the ER by using the transit peptide of Arabidopsis thaliana basic chitinase and a C‐terminal KDEL sequence for ER retention. The protein was expressed in N. benthamiana, purified by immobilized metal affinity chromatography and analysed by SDS‐PAGE (Figure 5).

Antigenicity of DENV1‐VLPs

To determine whether the purified DENV1 VLPs are immunologically active, we conducted antigenicity assays in 6‐to 9‐week‐old BALB/c mice using the vaccine candidates shown in Figure 5.

Six mice per group were immunized in a prime‐boost manner (0 and 14 days) for all tested vaccine candidates. Additionally, DENV1‐VLPs, B‐CLP‐DENV1‐EIII, B‐CLP‐DENV4‐EIII and B‐CLP‐ZIKV‐EIII were analysed in a single immunization (day 0), resulting in a total of 10 tested groups. For the VLPs/B‐CLP groups, a 10 µg/dose was applied, while for the EIII subunit, the concentration was adjusted to 0.7 µg/dose to analyse comparable molar amounts of delivered antigen. All candidates were applied without adjuvants.

Bodyweight and temperature were monitored over 28 days as indicators for animal health. No evidence of weight loss or any temperature fluctuations were detected, indicating that animals remained healthy throughout the experiment.

To detect virus‐specific antibody responses, ELISA plates were coated with mammalian cell‐produced DENV1, DENV4 and Zika virus (ZIKV) VLPs and ZIKV E protein. The mouse serum samples were applied and analysed for antibody binding to the antigen. As shown in Figure 6, only sera collected from mice immunized with DENV1‐VLPs showed specific binding to DENV1 antigen. Some cross‐reactivity was observed to DENV4 and ZIKV VLPs, but not to ZIKA E. Surprisingly, the antibody response after a single immunization was stronger compared with the prime‐boost group, although this was not statistically significant and might result from the small number of mice per group. These results indicate that VLPs are more efficient B‐cell response activators in mice compared with comparable doses of the DENV1 subunit and the display of EIII within BTV CPLs.

Figure 6.

Figure 6

Humoral response of DENV1 VLPs, EIII domains displayed in bluetongue CLPs and the DENV1‐EIII subunit. Six mice per group were immunized in a single or prime‐boost manner. Collected sera of immunized mice were tested in a dilution series against commercial DENV1, DENV4 and ZIKA VLPs, as well as recombinant ZIKA envelope protein (ZIKV‐Env). Lines show mean values with error bars denoted standard error. Only DENV1‐VLPs stimulated the production of reacting antibodies, indicating that in mice, VLPs are more efficient antigens in terms of B‐cell response than comparable amounts of the DENV1 subunit alone or the display of EIII on bluetongue CLPs.

Discussion

The aim of this study was to analyse the suitability of plants as a production platform for flaviviral VLPs. Immunogenic DENV VLPs have been produced in mammalian cells (Metz et al., 2018; Urakami et al., 2017; Zhang et al., 2011), insect cells (Charoensri et al., 2014) and yeast (Mani et al., 2013; Sugrue et al., 1997). These VLPs were produced using DENV prM‐E constructs, which led to the assembly of VLPs in the absence of non‐structural proteins. This strategy was also analysed by Kanagaraj et al. (2011) for DENV3 VLPs in lettuce chloroplast, and the expression of the E protein was shown, but the data analysing the assembly of DENV3 VLPs were not conclusive. In contrast to the approach using just prM‐E constructs in other systems, our results show that this strategy was not successful in Nicotiana benthamiana. To achieve VLP assembly, glycosylation and solubility in plants, the co‐expression of DENV‐NSP was necessary. This indicates that protein processing in plants for DENV constructs differs compared with other expression systems. This is further underlined by the observation that the replacement of the stem/anchor region of DENV1‐E with the sequence of JEV seemed to prevent VLP secretion in plants instead of promoting it as described in mammalian cells (Chang et al., 2003; Hsieh et al., 2008). Despite the different expression strategy, our plant‐made VLPs showed similarities in size and appearance to VLPs expressed in mammalian cells and led to B‐cell activation and antibody production in mice. Furthermore, as observed in the current study, Hsieh et al. (2008) described the presence of two sizes of DENV‐E. Our data suggest that this might be caused by a mixture of glycosylated and non‐glycosylated E protein. At this point, we can only speculate what causes the mix in glycosylation pattern, but once we integrated the F108A mutation in the E protein, we could only detect the glycosylated size of E. It might be possible that the F108A mutation in the fusion loop of E promotes secretion as described by Urakami et al. (2017) influencing the glycosylation efficiency of VLPs in plants. However, we did not observe an increase in VLP yield caused by F108A but instead faced more difficulties separating these VLPs away from plant impurities, which makes it difficult to definitively confirm that this mutant allows assembly into VLPs in plants.

As described for mammalian cell‐expressed DENV VLPs (Metz et al., 2018; Urakami et al., 2017), we observed that the prM protein was not cleaved into pr and M, which means that the VLPs are not matured and most likely present prM on the VLP surface (Li et al., 2008). For plant‐made VLPs, this observation was not surprising, because plants do not produce furin (Wilbers et al., 2016), the protease that cleaves prM during viral maturation (Li et al., 2008). However, the presence of prM on the VLP surface could be problematic for a vaccine candidate, because anti‐prM antibodies are non‐neutralizing and enhancing (Smith et al., 2016). A solution for this problem could be the co‐expression of a recently designed human furin variant, which showed high in vivo activity in plants (Mamedov et al., 2019).

A potential VLP‐based DENV vaccine must contain all four serotypes of DENV to avoid the potential of ADE. Because the expression of DENV3 prM‐E constructs was previously shown in lettuce chloroplasts (Kanagaraj et al., 2011), we initially tried to produce VLPs for DENV2 and 4. Surprisingly, we could not detect any protein expression for either serotype. We interpret this as being caused by differences in the efficiency of expression and conformational folding of the DENV proteins between various sero‐ or even genotypes, since radical differences in plant‐produced viral protein yield between different serotypes of the same virus has been observed on numerous occasions: notably, poliovirus (Marsian, 2016) and bluetongue virus (Fay, 2018). This should be considered for further work in this field, because finding a suitable genotype of the respective serotypes for expression in plants is likely to be a key determinant of recovered yield. Had this project gone differently, we would have compared VLPs of the four different DENV serotypes, but we were only able to consistently express VLPs for DENV‐1. It should be noted that DENV‐1 VLPs concentrated the majority of our efforts in terms of optimizing construct design and purification protocol, so it is possible that more time and resources would have allowed us to obtain VLPs of the other serotypes as well. Understanding and correcting the causes for differing yield between these serotypes would allow for the development of a plant‐produced tetravalent vaccine.

We were however able to test a range of strategies, and so antigen display and a subunit vaccine strategy were tested as potential alternatives to VLPs. We designed bluetongue core‐like particles (B‐CLP) carrying DENV1, DENV4 and Zika EIII antigens on the inside of the particle. Of the many strategies investigated to obtain VLP‐based flavivirus vaccine candidates in plants (most of which are not discussed here), this approach was by far the most successful in terms of recovered yield and ease of purification. Indeed, BCA assay quantification of the DENV VLP vaccine preparation indicated that purified recovered yield was about 2 µg of VLP per gram of fresh‐weight‐infiltrated leaf tissue (FWT) after three successive ultracentrifugation steps and multiple buffer exchange/concentration steps, while the B‐CLPs yielded 5–15 µg/g FWT after just one ultracentrifugation step and a single buffer exchange/concentration step. We therefore reasoned that these B‐CLPs were worth testing in mice despite the fact that they represent an unorthodox approach to antigen presentation (with the antigen 'presented' on the inside of the VLP); however, we hypothesized that this approach may result in improved T‐cell responses. This decision was supported by the publication of a similar approach using GFP fused to the inside of rotavirus particles, to elicit an antibody response to GFP (Charpilienne et al., 2001), although that study used adjuvant and higher inoculum doses compared with the protocol used here. As an alternative, we could have included tandem hepatitis B core‐based CLPs displaying DENV‐EIII on their outer surface (as described in Pang et al., 2019) for the mouse immunization studies, but preferred to analyse the more novel B‐CLP candidates.

While DENV1 VLPs induced an antibody response in mice, none of the DENV‐B‐CLPs showed any effect at the doses used. In line with this, serum from mice immunized with B‐CLP‐Zika EIII did not lead to any detectable antibody response when tested against the commercial Zika envelope protein. Antigen display of DENV‐EIII domain on mosaic hepatitis B surface antigens (Ramasamy et al., 2018) and on hepatitis B core antigen VLPs (Arora et al., 2013; Pang et al., 2019) previously led to an immune response in mice. We therefore conclude that B‐CLP is a poor carrier for DENV and Zika EIII domain antigens in terms of B‐cell activation in mice. DENV1 VLPs were also superior compared to the EIII domain subunit antigen, which was not unexpected, because VLPs are usually more efficient due to their size and repetitive surface (Bachmann and Jennings, 2010; Bachmann and Zinkernagel, 1997; Link et al., 2012). We did not observe any increase in antibody titres in the mice that received a booster of DENV1 VLPs compared with those that received only the prime. In fact, antibody titres from boosted animals were lower than in those that were only primed, although this difference was not statistically significant. It is not clear why this might be the case, but there are examples of booster vaccinations (with live attenuated virus vaccines) having limited effect on the stimulation of the immune response (Christenson and Bottiger, 1994; Kongsgaard et al., 2017). We also carried out interferon‐gamma ELISPOT assays on the splenocytes of vaccinated mice, and the results of these suggest that there may be a specific T‐cell response stimulated by the B‐CLPs (but not by the DENV1 VLPs) after a prime‐boost regimen; however, the results were not statistically significant, so no firm conclusions could be drawn from these experiments (Figure S6).

For further studies, it would be interesting to directly compare the neutralizing antibody response of DENV1 VLPs with E‐DIII displaying hepatitis B particles, because the production of neutralizing antibodies in humans is not limited to the EIII region but rather involves the quaternary structures formed by E protein multimers (de Alwis et al., 2012; Wahala et al., 2009). Furthermore, the extension of the EIII domain subunit with a part of the E domain II led to improved neutralizing antibody titre (Park et al., 2020), indicating that the use of VLPs displaying the whole E protein is likely to be the most suitable DENV vaccine strategy, provided that prM cleavage and maturation of VLPs can be achieved to avoid the production of non‐neutralizing, but enhancing antibodies. In fact, we attempted to display the entire DENV1 E ectodomain on the surface of tandem hepatitis B core particles to compare this external antigen display strategy with our DENV1 VLPs, but we were unable to produce such full‐length E‐displaying HBcAg CLPs.

This work joins a very small number of published examples of plant‐produced enveloped VLPs that could be purified and shown to be immunogenic. The only other examples to our knowledge are influenza virus haemagglutinin (HA) VLPs (D'Aoust et al., 2010; D'Aoust et al., 2008) and chimaeric VLPs composed of the ectodomain of Rift Valley fever virus Gn fused to the transmembrane and cytosolic domains of influenza HA (Mbewana et al., 2019). Our work therefore represents the first example of such plant‐produced enveloped VLPs in which influenza HA is not used to supply the transmembrane domain of the viral glycoprotein. At present, plants are a challenging expression system for these types of VLPs, because of differences in protein processing compared with other expression systems and challenging product purification compounded by low yield. However, if a more suitable purification system is established and we gain more insights into the protein processing of DENV proteins in N. benthamiana, plants could one day prove to be a highly scalable and cost‐efficient expression platform, as they are for influenza VLPs.

Methods

Construction of plant expression vectors

Coding regions of the structural (SP) and a NS5‐truncated version of non‐structural proteins (NSP) of DENV serotype 1 (strain Hawaii, GenBank: KM204119.1), serotype 2 (Strain New Guinea C, GenBank KM204118.1) and serotype 4 (Strain H241, GenBank KR011349), and the structural proteins of Zika virus (strain ZikaSPH2015, GenBank KU321639) were codon‐optimized for expression in N. benthamiana and synthetized by GeneArt (Life Technologies Ltd., United Kingdom). The prM‐E sequence (denv1‐prM‐E) was amplified from denv1‐sp using primers denv1‐prM‐E‐fw and denv1‐prM‐E‐rv (Table S1). The F108A point mutation, replacing a phenylalanine at position 108 of the DENV‐E protein with alanine (Urakami et al., 2017), was inserted using the GeneArt site directed mutagenesis kit (Invitrogen™, USA) into denv1‐sp according to the manufacturer’s protocol using primers denv1‐f108a‐fw and denv1‐f108a‐rv (Table S1) resulting in denv1‐sp‐f018a. The stem/anchor region of DENV1‐E (amino acids 398‐491) in denv1‐sp‐f108a was replaced with the corresponding sequence of JEV (strain Nakayama, GenBank: EF571853.1) according to Chang et al. (2003) and Hsieh et al. (2008) resulting in denv1‐sp‐f108a‐jev. E domain III fusions to BTV VP3 were made by amplifying denv1‐sp with primers DENV1‐EIII‐fw and DENV1‐EIII‐rv, denv4‐sp with primers DENV4‐EIII‐fw and DENV4‐EIIID3‐rv, and with primers ZIKV‐EIII‐fw and ZIKV‐EIII‐rv (Table S1). All amplified E domain III fragments were flanked by NruI/AgeI and BspEI restrictions sites for cloning into pEAQ‐GFP:VP3 (Thuenemann and Lomonossoff, 2018). The EIII subunit was amplified from pEAQ‐HT‐DENV1‐SP using primers DENV1‐EIII‐fw and rv (Table S1). For targeting to the ER, an N‐terminal transit peptide from Arabidopsis thaliana basic chitinase (MKTNLFLFLIFSLLLSLSSAE) was amplified to DENV1‐EIII using primer TP‐Atl‐fw. For purification, a 6xHis‐tag was amplified using primer DENV1‐EIII‐his‐rv.

All coding regions were flanked by AgeI and XhoI restriction sites and cloned into the similarly digested pEAQ‐HT expression vector (Peyret and Lomonossoff, 2013, Sainsbury et al., 2009). Plasmids were transformed into E.coli top 10 cells (Life Technologies Ltd, Thermo Fisher Scientific, UK) for plasmid propagation, and sequences were confirmed by sequencing. All plasmids were transformed into Agrobacterium tumefaciens LBA4404 (or AGL1 for pEAQ‐HT‐denv1‐EIII) for transient expression in N. benthamiana.

Protein expression and analysis

Transient expression in 3‐ to 4‐week‐old N. benthamiana plants was carried out by agroinfiltration as described by Thuenemann et al. (2013). For B‐CLPs, constructs for EIII:VP3 fusion proteins were co‐infiltrated with pEAQ‐VP7HT (Thuenemann et al., 2013). Leaves were harvested 6 days post‐infiltration (dpi) and analysed for protein expression modified from Peyret et al. (2015). A total of 6 leaf discs were punched out of the leaves using a cork borer (number 6, Sigma‐Aldrich Co. Ltd., catalogue number Z165220). The discs were homogenized in 270 µL NPI buffer (50 mm sodium phosphate, 300 mm NaCL, pH8.0, EDTA‐free complete protease inhibitor cocktail (Roche Diagnostics GmbH, Germany)) using a Bead Ruptor 24 (Camlab, United Kingdom, speed = 4, 30 s, 5 °C). Homogenized samples were centrifuged (10 min, 16 000 g , 5 °C), and supernatant was collected and clarified a second time under the same conditions. The pellet was resuspended in 200 µL NPI buffer. Pellet and clarified supernatant were mixed in a 1:1 ratio with loading buffer, which consisted of a 3:1 ratio of NuPAGE LDS buffer (Novex, Life Technologies, Carlsbad, CA) and 2‐mercaptoethanol. Samples were then boiled for 20 min and clarified for 10 min at room temperature (16 000 g ).

Samples were analysed by electrophoresis on a 4%–12% (DENV‐E) or 12% (DENV prM) NuPAGE Bis‐Tris polyacrylamide gels (Novex, Life Technologies). Gels were stained using InstantBlue™ (Expedeon Ltd., UK) or analysed by Western blot as follows: proteins were blotted on a nitrocellulose membrane using the Trans‐Blot Turbo™ RTA Transfer Kit in a Trans‐Blot Turbo™ System (Bio‐Rad). Membranes were blocked overnight in blocking buffer (5% (w/v) skimmed milk powder in phosphate‐buffered saline with 0.1% (v/v) Tween‐20). Primary antibodies were used in a 1:2000 dilution in blocking buffer for 2 h at room temperature (RT): anti‐DENV‐E: mouse, monoclonal (cat. number: MCA2277, Bio‐Rad, United Kingdom); and anti‐DENV prM: rabbit polyclonal (cat. number: GTX128093, Insight Biotechnology Ltd., United Kingdom). The secondary antibodies were diluted 1:10 000 in blocking buffer and incubated for 1 h at RT: anti‐rabbit (Amersham™, goat anti‐rabbit IGG, HRP, cat. number: RPN4301GE Healthcare, United Kingdom) and anti‐mouse (HRP‐goat anti‐mouse, cat. number: 626520, Life Technologies). For development, chemiluminescent substrate (Immobilon™, Millipore, Burlington, MA) was used and chemiluminescence was detected using an ImageQuant LAS 500 (GE Healthcare UK Ltd., United Kingdom).

Isolation of DENV1 virus‐like particles from plant material

Leaves were harvested at 6 dpi and blended in 3 volumes of TNE buffer (10 mm Tris‐HCl, 120 mm NaCl, 1 mm EDTA, EDTA‐free complete protease inhibitor cocktail (Roche Diagnostics GmbH, Germany), pH = 8.0). Crude extract was filtered through one layer of Miracloth (Merck KGaA, Germany) and clarified (30 min, 4 °C, 29 000 g ). The supernatant was filtered through a 0.45‐µm filter (Sartorius GmbH, Germany) and loaded on a discontinuous 10%–70% (w/v) sucrose gradient (10% steps, 2 mL each fraction, sucrose prepared in TNE buffer). Fractions were collected from the bottom in 2 mL steps after 4‐h centrifugation in a SureSpin 630/36 rotor (Thermo Fisher Scientific) at 167 000 g , 4 °C, 4 h, and analysed by Western blot for the presence of DENV‐E. The 40% fraction was diluted 1:1 with TNE and loaded on a discontinuous glycerol gradient (2 mL fractions; 10%, 15%, 20%, 30% (v/v) gradient; glycerol diluted in TNE buffer). These gradients were centrifuged in a TH641 rotor (Thermo Fisher Scientific) at 274 000 g , 4 °C, 4 h. Fractions were collected from the top of the gradient in 2 mL steps. The DENV‐E‐positive fractions were determined by Western blot, pooled and concentrated to a final volume of 2 mL using Amicon Ultra‐15 100 000 MWCO spin concentrators (Merck Millipore Ltd., Ireland) as described by the manufacturer. To remove residual glycerol, the buffer was exchanged to TNE during concentration. For the final purification, the concentrated samples were loaded on a second discontinuous sucrose gradient (20%–60% (w/v)) and centrifuged at 274 000 g , 4 °C, 3 h in a TH641 rotor (Thermo Fisher Scientific). The gradients were fractionated from the top and analysed by Western for the presence of DENV‐E. Figure S5 shows the Western blots used to decide which fractions of the three different gradients to take forward in the purification. Positive fractions from the final gradient were concentrated to a final volume of about 2 mL as described before, and sucrose was removed during concentration by buffer exchange with phosphate‐buffered saline (PBS)‐G (PBS 100, Formedium, UK, pH = 7.4, 10% (v/v) glycerol). Samples were snap‐frozen in liquid nitrogen and stored at −80°C until further analysis by SDS‐PAGE, BCA assay protein quantification (Thermo Fisher Scientific) and transmission electron microscopy.

Purification of B‐CLPs

Leaf tissue was harvested at 8 dpi and blended in 3 times the volume of BTV CLP extraction buffer (50 mm Bicine, pH 8.4, 140 mm NaCl, 1% (w/v) NLS [N‐lauroylsarcosine sodium salt], 1 mm DTT, 0.5 × Complete EDTA‐free Protease Inhibitor) using a Waring blender. The homogenized material was filtered through 2 layers of Miracloth and clarified by centrifugation (13 000 g , 10 °C, 10 min).

The clarified supernatant was loaded on an Optiprep gradient (20%, 30%, 40%, 50%, 3 mL per fraction). Optiprep was prepared in 6× CLP purification buffer (300 mm Tris‐HCl, pH8, 840 mm NaCl, RT). Gradients were centrifuged in a SureSpin 630/36 rotor (Thermo Fisher Scientific) at 85710 g, 10 °C, 3 h. 7 fractions (first fraction 2 mL, fraction 2–7 1 mL each) were collected from the bottom of the tube, and 6 µL of each fraction was analysed by SDS‐PAGE to identify fractions containing CLPs. Figure S5 shows the gel used to decide which fractions to take forward. These were concentrated to a final volume of about 2 mL, and Optiprep was removed during concentration by buffer exchange with phosphate‐buffered saline (PBS)‐G and characterized/stored as described above.

Purification of DENV1‐EIII

Plants were harvested at 4 dpi and blended in 3 times extraction buffer (50 mm Tris, 300 mm NaCl, 1 mm PMSF, 10 mm Na metabisulphate, pH 7.0) at medium speed for 40 s 4 times using a Waring blender. The homogenate was filtered using a 1‐µm bag filter (spectrum) and centrifuged at 4000 g for 15 min and 10 000 g for 15 min at 4 °C. Supernatant was filtered in 3 steps through a 1‐µm to 0.8‐µm and 0.22‐µm PolyCap filter (Whatman GE) followed by a 0.22‐µm PES bottle top filter (Nalgene) before immediately loading onto a 5 mL HiTrap Talon Crude column equilibrated in 50 mm Tris, 300 mm NaCl, pH 7.0 using an AKTA Avant (GE Healthcare). The column was washed as follows: 20 column volumes (CVs) of equilibration buffer, 10 CVs of wash buffer (50 mm Tris, 300 mm NaCl, 0.1 % Triton X‐100, pH 7.0) and 10CVs of equilibration buffer. Protein was eluted with 10CVs of elution buffer (50 mm Tris, 300 mm NaCl, 200 mm imidazole, pH 7.0.). The flow‐through sample was reloaded and the purification repeated to ensure that all material present was captured. Fractions from containing target protein, as confirmed by SDS‐PAGE, were pooled and concentrated using a PES 10k MWCO centrifugal concentrator (Millipore) before applying at 1 mL/min to a 120 mL Superdex 75 column (GE Healthcare) that had been pre‐equilibrated in gel filtration buffer (50 mm Tris, pH 7.0, 140 mm NaCl). Fractions containing target protein were pooled, 0.22 µm sterile‐filtered and concentrated using a 10 kDa MWCO centrifugal concentrator (Millipore) to 0.85 mg/mL.

For immunogenicity assays, all samples were buffer‐exchanged to PBS‐G and quantified using the Pierce BCA Protein Assay Kit (Thermo Fischer Scientific) according to the manufacturer’s protocol to calculate doses for animal experiments.

Negative‐stain transmission electron microscopy (TEM) and particle measuring

Samples were adsorbed on a 400 mesh carbon‐coated copper grid (EM resolutions UK) for 30 s. The grids were washed with 8 drops of H2Odd and stained with 2% (w/v) uranyl acetate for 15–30 s and imaged using a Talos F200C TEM fitted with a Gatan OneView camera. Particles were measured using the ImageJ software for Windows.

Deglycosylation of DENV VLPs

Glycerol‐free PNGase F (New England Biolabs Inc., USA) was used according to the manufacturer’s protocol under native conditions with an incubation time of 24 h at 37 °C. Western blot was used to analyse the samples as described above.

Immunogenicity assay

Immunogenicity assays were carried out by Public Health England as follows: Sixty BALB/c mice aged 6–9 weeks were purchased from a Home Office‐approved breeder and supplier (Envigo). The mice were implanted with a temperature and identity chip during an acclimatization period. Groups of n = 6 mice (consisting of equal numbers of female and males) were immunized via the subcutaneous route in a single or a prime‐boost manner on day 0 and 14 with 100 µL of each candidate vaccine. Empty bluetongue CLPs and DENV1 EIII subunit were only analysed in a prime‐boost manner. For the VLP or CLP groups, the concentration was 10 µg/dose and for the subunit vaccine 0.7 µg/dose for comparable antigen molarity. 14 days after the last immunization, all mice were sacrificed and blood was collected for immunological analysis. Antibody response was measured using ELISA. To detect specific antibodies, 96‐well plates (NUNC Maxisorp) were coated with 5 µg/mL of each of the following antigens diluted in carbonate–bicarbonate buffer (Thermo, Product #28382): recombinant Zika virus envelope protein (Native Antigen Company, ZIKVSU‐ENV‐100), Zika VLP (Native Antigen Company, ZIKV‐VLP‐250), DENV1 VLP (Native Antigen Company, DENV1‐VLP‐250) and DENV4 VLP (Native Antigen Company, DENV4‐VLP‐250). Ten plates for each antigen were prepared and left overnight at 2–8 °C. Plates were then washed three times with PBS containing 0.05% (v/v) Tween‐20 (PBS‐Tween) and blocked with PBS containing 10% (w/v) skimmed milk powder for 2 h at room temperature. Serum samples were serially diluted twofold in PBS containing 2.5% (w/v) skimmed milk powder from 1:50 to 1:3200 before being added to the test plates in duplicate test wells. Control preparations of anti‐dengue mAb (Native Antigen Company, MAB12267‐500) and anti‐Zika mAb (Native Antigen Company, MAB12312‐500) were made starting at 10 µg/mL and then with 10‐fold dilutions to 0.01 µg/mL. Each ELISA plate had the control preparations in addition to 4 wells with no samples (diluent alone). Plates were incubated for 1 h at 37°C and following three washes with PBS‐Tween, 100 µL/well of peroxidase‐conjugated goat anti‐mouse IgG detector antibody diluted 1:5000 was added (Jackson ImmunoResearch, Product 115‐035‐071). Following incubation for 1 h at 37°C, plates were washed another three times with PBS‐Tween and peroxidase substrate was added (KPL TMB microwell peroxidase substrate system, Product 5120‐0047). After approximately 30 min, the reaction was halted by addition of stop solution (KPL TMB stop solution, Product 5420‐0026). Absorbances were read at a wavelength of 450 nm. Sample‐specific results were obtained by subtraction of the average absorbance from the 4 wells containing diluent only.

Accession numbers

DENV Serotype 1 strain Hawaii: GenBank: KM204119.1

Serotype 2 strain New Guinea C: GenBank KM204118.1

Serotype 4 strain H241: GenBank KR011349.

Zika strain ZikaSPH2015: GenBank KU321639.

Conflict of interest

G.P.L. declares that he is a named inventor on granted patent WO 29087391 A1, which describes the HyperTrans transient expression system used in this manuscript.

Authors' contributions

DP, YM, ET, HP, ADA and RO designed constructs, and conducted expression tests in plants and purification and analysis of DENV1‐VLPs, BTV‐CLPs and DENV1‐EIII. SD and EK designed and conducted immunogenicity assays. HP, NH, MS and GPL supervised the work and gave scientific advice. All authors contributed to the manuscript.

Supporting information

Figure S1Anti‐DENV E and anti‐prM Western blot of leaves co‐infiltrated with DENV‐SP and DENV‐NSP of serotype 1,2 and 4. Plants where harvested 6 dpi and analysed as described in material and methods. C = 100 ng DENV2‐VLPs positive control.

Figure S2Uncropped Western blots as shown in Figure 2 in the main text. A: Co‐expression of DENV1‐SP + DENV1‐NS3 (*) is not discussed in the original manuscript. No nonspecific bands or uncleaved polyproteins were detected. B: Membrane was cut after blotting and the upper part was analysed with anti‐DENV‐E and the lower part with anti‐prM antibodies.

Figure S3TEM analysis of purified bluetongue (BTV) core‐like particles (BTV c‐) displaying E domain III (EIII) of DENV1, DENV4 and Zika. Particles were negatively stained with 2% (w/v) uranyl acetate.

Figure S4Mass spectrometry analysis of B‐CLPs: The amino acid sequence of the ED3:VP3 fusion proteins was confirmed by mass spectrometry following a tryptic digest of gel‐purified protein. The presented data show an alignment of the N‐terminal E domain III sequences only. Green boxes show the sequences confirmed by presence of peptides in mass spectrometry. Homologous residues between DENV1, DENV4, and Zika EIII are shown in blue.

Figure S5Blots/gels of gradient fractions during purification of candidate vaccine VLPs. Samples were treated as described in material and method. Top: Fractions of the 3 different gradients used to purify DENV1 VLPs were analysed by anti‐E Western blotting, with the cleanest, most concentrated fractions (red stars) being pooled and taken forward to the next step. After the final sucrose gradient, the fractions indicated were pooled, buffer‐exchanged and concentrated as indicated in the Materials and Methods. Bottom: Fractions of the Optiprep gradients used to purify B‐CLPs were analysed by SDS‐PAGE with the cleanest fractions (red stars) being pooled and taken forward for buffer exchange and concentration as indicated in the Materials and Methods. The purification of the vaccine preparations involved numerous identical gradients being processed in parallel to increase production capacity, each of which was fractionated and analysed separately: representative blots and gels are shown here.

Figure S6Interferon‐gamma ELISPOT assays on splenocytes of vaccinated mice. An increased number of antigen‐specific IFN‐γ secreting cells to the peptides covering the ectodomain antigens were observed in animals immunized with the B‐CLP vaccine candidates under a prime‐boost approach, but not with a single immunization (6a). Statistical analysis using the non‐parametric Mann‐Whitney statistical test didn’t show any significant difference (P > 0.05) between these levels and that of the groups containing the bluetongue vector alone, likely due to the number of animals used (n = 6) and variability between animals. Peptide pools spanning the DENV1 E protein did not show any specific reactivity in the immunized animals (6b).

Table S1 Used cloning primers: fw = forward, rv = reverse. Cloning sites: yellow = AgeI, green = XhoI, blue = BspEI, bold/underlined = NruI. Red sequence in F108A substitution of phenylalanine with alanine in DENV‐E.

PBI-19-745-s001.pdf (759.2KB, pdf)

Acknowledgements

We thank Kim Findlay, Elaine Barclay and Jake Richardson of the John Innes Centre bio‐imaging facility for their support with the electron microscopy, as well as Gerhard Saalbach of the John Innes Centre Proteomics platform for support with mass spectrometry. At the John Innes Centre, this work was supported by the United Kingdom Biotechnology and Biological Sciences Research Council (BBSRC) Grant BB/L020955/1, the Institute Strategic Programme Grant 'Molecules from Nature‐Enhanced Research Capacity' (BBS/E/J/000PR9794) and the John Innes Foundation. This research was funded by the Department of Health and Social Care using UK Aid funding and was managed by the BBSRC. Views expressed in this article are those of the authors and do not necessarily reflect those of the employing institutions or the Department of Health and Social Care.

Ponndorf, D. , Meshcheriakova, Y. , Thuenemann, E. C. , Dobon Alonso, A. , Overman, R. , Holton, N. , Dowall, S. , Kennedy, E. , Stocks, M. , Lomonossoff, G. P. and Peyret, H. (2021) Plant‐made dengue virus‐like particles produced by co‐expression of structural and non‐structural proteins induce a humoral immune response in mice. Plant Biotechnol. J. 10.1111/pbi.13501

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Figure S1Anti‐DENV E and anti‐prM Western blot of leaves co‐infiltrated with DENV‐SP and DENV‐NSP of serotype 1,2 and 4. Plants where harvested 6 dpi and analysed as described in material and methods. C = 100 ng DENV2‐VLPs positive control.

Figure S2Uncropped Western blots as shown in Figure 2 in the main text. A: Co‐expression of DENV1‐SP + DENV1‐NS3 (*) is not discussed in the original manuscript. No nonspecific bands or uncleaved polyproteins were detected. B: Membrane was cut after blotting and the upper part was analysed with anti‐DENV‐E and the lower part with anti‐prM antibodies.

Figure S3TEM analysis of purified bluetongue (BTV) core‐like particles (BTV c‐) displaying E domain III (EIII) of DENV1, DENV4 and Zika. Particles were negatively stained with 2% (w/v) uranyl acetate.

Figure S4Mass spectrometry analysis of B‐CLPs: The amino acid sequence of the ED3:VP3 fusion proteins was confirmed by mass spectrometry following a tryptic digest of gel‐purified protein. The presented data show an alignment of the N‐terminal E domain III sequences only. Green boxes show the sequences confirmed by presence of peptides in mass spectrometry. Homologous residues between DENV1, DENV4, and Zika EIII are shown in blue.

Figure S5Blots/gels of gradient fractions during purification of candidate vaccine VLPs. Samples were treated as described in material and method. Top: Fractions of the 3 different gradients used to purify DENV1 VLPs were analysed by anti‐E Western blotting, with the cleanest, most concentrated fractions (red stars) being pooled and taken forward to the next step. After the final sucrose gradient, the fractions indicated were pooled, buffer‐exchanged and concentrated as indicated in the Materials and Methods. Bottom: Fractions of the Optiprep gradients used to purify B‐CLPs were analysed by SDS‐PAGE with the cleanest fractions (red stars) being pooled and taken forward for buffer exchange and concentration as indicated in the Materials and Methods. The purification of the vaccine preparations involved numerous identical gradients being processed in parallel to increase production capacity, each of which was fractionated and analysed separately: representative blots and gels are shown here.

Figure S6Interferon‐gamma ELISPOT assays on splenocytes of vaccinated mice. An increased number of antigen‐specific IFN‐γ secreting cells to the peptides covering the ectodomain antigens were observed in animals immunized with the B‐CLP vaccine candidates under a prime‐boost approach, but not with a single immunization (6a). Statistical analysis using the non‐parametric Mann‐Whitney statistical test didn’t show any significant difference (P > 0.05) between these levels and that of the groups containing the bluetongue vector alone, likely due to the number of animals used (n = 6) and variability between animals. Peptide pools spanning the DENV1 E protein did not show any specific reactivity in the immunized animals (6b).

Table S1 Used cloning primers: fw = forward, rv = reverse. Cloning sites: yellow = AgeI, green = XhoI, blue = BspEI, bold/underlined = NruI. Red sequence in F108A substitution of phenylalanine with alanine in DENV‐E.

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