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. 2021 Apr 2;9(4):744. doi: 10.3390/microorganisms9040744

Correction: De Vogel, F.A., et al. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms 2021, 9, 186

Fons A de Vogel 1,2, Cathleen Schlundt 3,†, Robert E Stote 4, Jo Ann Ratto 4, Linda A Amaral-Zettler 1,3,5,*
PMCID: PMC8067014  PMID: 33918534

The authors wish to make the following corrections to this paper [1]:

1. Change to Section 3.1. Isolate Identification

The 16S rRNA gene sequences are deposited under GenBank accession numbers MW435594-MW435596 and in CPXXXXXXX-CPXXXXX. Associated metadata are specified in Supplementary Tables S9 and S10.

To the correct version, as follows:

The 16S rRNA gene sequences are deposited under GenBank accession numbers MW435594-MW435596 and in JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000. Associated metadata are specified in Supplementary Tables S9 and S10.

2. Change to Section 3.4. Whole-Genome Sequencing

The RASTtk annotated genomes are available online via https://rast.nmpdr.org/ by logging in as guest and can be found under ID numbers 6666666.521526 (Rhodobacter sp. NTK016B), 6666666.521528 (Bacillus sp. NTK034), 6666666.521530 (Bacillus sp. NTK071) and 6666666.521531 (Bacillus sp. NTK074B). The raw sequence reads are deposited in the NCBI Sequence Read Archive under BioProject PRJNA649735 with sample accession numbers SRR12354198 to SRR12354201. Annotated genomes are also deposited in INSDC under references CPXXXXXX-CPXXXXXX, and associated metadata are specified in Supplementary Table S10.

To the correct version, as follows:

The RASTtk annotated genomes are available online via https://rast.nmpdr.org/ by logging in as guest and can be found under ID numbers 6666666.521526 (Rhodobacter sp. NTK016B), 6666666.521528 (Bacillus sp. NTK034), 6666666.521530 (Bacillus sp. NTK071), and 6666666.521531 (Bacillus sp. NTK074B). The raw sequence reads are deposited in the NCBI Sequence Read Archive under BioProject PRJNA649735 with sample accession numbers SRR12354198 to SRR12354201. Assembled genomes are deposited in INSDC under references JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000, and associated metadata are specified in Supplementary Table S10.

3. Change to Data Availability Statement

The genome data obtained in this study can be found there under BioProject number PRJNA649735. More specifically, the raw genome sequence reads are deposited in the NCBI Sequence Read Archive with accession numbers SRR12354198-SRR12354201 and annotated genomes are deposited in INSDC under accession numbers CPXXXXXX-CPXXXXXX. The annotated genomes are also available online at RAST via https://rast.nmpdr.org/, when logging in with a guest-account. They can be found under ID numbers 6666666.521526, 6666666.521528, 6666666.521530, and 6666666.521531.

To the correct version, as follows:

The genome data obtained in this study can be found there under BioProject number PRJNA649735. More specifically, the raw genome sequence reads are deposited in the NCBI Sequence Read Archive with accession numbers SRR12354198-SRR12354201 and assembled genomes are deposited in INSDC under accession numbers JAFKOK000000000, JAFKOJ000000000, JAFKOI000000000, and JAFKOH000000000. The annotated genomes are available online at RAST via https://rast.nmpdr.org/, when logging in with a guest-account. They can be found under ID numbers 6666666.521526, 6666666.521528, 6666666.521530, and 6666666.521531.

4. Addition to Supplementary Table S8

Protein NCBI Protein Accession Species Signal Peptide Oxyanion Hole Lipase Box Catalytic Triad (S-H-A) Reference
Hypothetical protein ◄ XXXXXX Bacillus sp. NTK074B 1-22 57-57 119-123 121-223-256 This study
Hypothetical protein sed_3530 ABV38134 Shewanella sediminis HAW-EB3 1-23 67-73 160-164 162-269-331 [84]
Lipase A P37957 Bacillus subtilis strain 168 1-31 36-42 106-110 108-164-187 [85]
Lipase class 2 ABZ77296 Shewanella halifaxensis HAW-EB4 1-23 67-73 160-164 162-269-331 [84]
Lipase precursor ◄ XXXXXX Vibrio alginolyticus ATCC 33787 1-23 33-39 104-108 106-253-275 This study
Lipase precursor ◄ XXXXXX Vibrio proteolyticus NBRC 13287 1-23 35-41 106-110 108-255-277 This study
PhaZ7 Q939Q9 Paucimonas lemoignei 1-38 80-86 172-176 174-280-344 [86–88]
Thermostable lipase Q842J9 Geobacillus zalihae T1 1-28 37-43 139-143 141-345-386 [89,90]
Triacylglycerol lipase WP_005101273 Acinetobacter multispecies 1-29 50-56 125-129 127-280-302 [91]
Triacylglycerol lipase WP_005101276 Acinetobacter multispecies 1-23 44-50 120-124 122-267-289 [91]
Triacylglycerol lipase WP_064094572 Acinetobacter multispecies 1-21 42-48 117-121 119-266-288 [91]
Triacylglycerol lipase P22088 Burkholderia cepacian ATCC 21808 1-44 54-60 129-133 131-308-330 [92,93]
Triacylglycerol lipase Q05489 Burkholderia glumae ATCC 6918 1-39 49-55 124-128 126-302-324 [94,95]
Triacylglycerol lipase P26876 Pseudomonas aeruginosa PAO1 1-26 35-41 106-110 108-255-277 [96,97]

To the correct version, as follows:

Protein NCBI Protein Accession Species Signal Peptide Oxyanion Hole Lipase Box Catalytic Triad (S-H-A) Reference
Hypothetical protein ◄ MBN8191285 Bacillus sp. NTK074B 1-22 57-57 119-123 121-223-256 This study
Hypothetical protein sed_3530 ABV38134 Shewanella sediminis HAW-EB3 1-23 67-73 160-164 162-269-331 [84]
Lipase A P37957 Bacillus subtilis strain 168 1-31 36-42 106-110 108-164-187 [85]
Lipase class 2 ABZ77296 Shewanella halifaxensis HAW-EB4 1-23 67-73 160-164 162-269-331 [84]
Lipase precursor ◄ ALR91050 Vibrio alginolyticus ATCC 33787 1-23 33-39 104-108 106-253-275 Direct Submission (08-DEC-2015)
Lipase precursor ◄ GAD66740 Vibrio proteolyticus NBRC 13287 1-23 35-41 106-110 108-255-277 Direct submission (10-SEP-2013)
PhaZ7 Q939Q9 Paucimonas lemoignei 1-38 80-86 172-176 174-280-344 [86–88]
Thermostable lipase Q842J9 Geobacillus zalihae T1 1-28 37-43 139-143 141-345-386 [89,90]
Triacylglycerol lipase WP_005101273 Acinetobacter multispecies 1-29 50-56 125-129 127-280-302 [91]
Triacylglycerol lipase WP_005101276 Acinetobacter multispecies 1-23 44-50 120-124 122-267-289 [91]
Triacylglycerol lipase WP_064094572 Acinetobacter multispecies 1-21 42-48 117-121 119-266-288 [91]
Triacylglycerol lipase P22088 Burkholderia cepacian ATCC 21808 1-44 54-60 129-133 131-308-330 [92,93]
Triacylglycerol lipase Q05489 Burkholderia glumae ATCC 6918 1-39 49-55 124-128 126-302-324 [94,95]
Triacylglycerol lipase P26876 Pseudomonas aeruginosa PAO1 1-26 35-41 106-110 108-255-277 [96,97]

5. Addition to Table S10 (only Partly Shown):

NCBI BioProject number PRJNA649735 PRJNA649735 PRJNA649735 PRJNA649735
NCBI BioSample number SAMN15677905 SAMN15677906 SAMN15677907 SAMN15677908
NCBI SRA accession number SRR12354201 SRR12354200 SRR12354199 SRR12354198
NCBI Genome accession number

To the correct version, as follows:

NCBI BioProject number PRJNA649735 PRJNA649735 PRJNA649735 PRJNA649735
NCBI BioSample number SAMN15677905 SAMN15677906 SAMN15677907 SAMN15677908
NCBI SRA accession number SRR12354201 SRR12354200 SRR12354199 SRR12354198
NCBI Genome accession number JAFKOK000000000 JAFKOJ000000000 JAFKOI000000000 JAFKOH000000000

The authors would like to apologize to the readers for any inconvenience caused by these changes.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.

Footnotes

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Reference

  • 1.De Vogel F.A., Schlundt C., Stote R.E., Ratto J.A., Amaral-Zettler L.A. Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates. Microorganisms. 2021;9:186. doi: 10.3390/microorganisms9010186. [DOI] [PMC free article] [PubMed] [Google Scholar]

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