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. 2021 Apr 29;16(4):e0250796. doi: 10.1371/journal.pone.0250796

Risk factors for unfavorable outcome and impact of early post-transplant infection in solid organ recipients with COVID-19: A prospective multicenter cohort study

Sonsoles Salto-Alejandre 1,2, Silvia Jiménez-Jorge 1,2, Nuria Sabé 3, Antonio Ramos-Martínez 4, Laura Linares 5, Maricela Valerio 6, Pilar Martín-Dávila 7, Mario Fernández-Ruiz 8, María Carmen Fariñas 9, Marino Blanes-Juliá 10, Elisa Vidal 11, Zaira R Palacios-Baena 2,12, Román Hernández-Gallego 13, Jordi Carratalá 3, Jorge Calderón-Parra 4, María Ángeles Marcos 5, Patricia Muñoz 6,14, Jesús Fortún-Abete 7, José María Aguado 8, Francisco Arnaiz-Revillas 9, Rosa Blanes-Hernández 10, Julián de la Torre-Cisneros 11, Luis E López-Cortés 2,12, Elena García de Vinuesa-Calvo 13, Clara M Rosso 2,15, Jerónimo Pachón 2,16,*, Javier Sánchez-Céspedes 1,2, Elisa Cordero 1,2,16; on behalf of The COVIDSOT Working Team
Editor: Stanislaw Stepkowski17
PMCID: PMC8084252  PMID: 33914803

Abstract

The aim was to analyze the characteristics and predictors of unfavorable outcomes in solid organ transplant recipients (SOTRs) with COVID-19. We conducted a prospective observational cohort study of 210 consecutive SOTRs hospitalized with COVID-19 in 12 Spanish centers from 21 February to 6 May 2020. Data pertaining to demographics, chronic underlying diseases, transplantation features, clinical, therapeutics, and complications were collected. The primary endpoint was a composite of intensive care unit (ICU) admission and/or death. Logistic regression analyses were performed to identify the factors associated with these unfavorable outcomes. Males accounted for 148 (70.5%) patients, the median age was 63 years, and 189 (90.0%) patients had pneumonia. Common symptoms were fever, cough, gastrointestinal disturbances, and dyspnea. The most used antiviral or host-targeted therapies included hydroxychloroquine 193/200 (96.5%), lopinavir/ritonavir 91/200 (45.5%), and tocilizumab 49/200 (24.5%). Thirty-seven (17.6%) patients required ICU admission, 12 (5.7%) suffered graft dysfunction, and 45 (21.4%) died. A shorter interval between transplantation and COVID-19 diagnosis had a negative impact on clinical prognosis. Four baseline features were identified as independent predictors of intensive care need or death: advanced age, high respiratory rate, lymphopenia, and elevated level of lactate dehydrogenase. In summary, this study presents comprehensive information on characteristics and complications of COVID-19 in hospitalized SOTRs and provides indicators available upon hospital admission for the identification of SOTRs at risk of critical disease or death, underlining the need for stringent preventative measures in the early post-transplant period.

Introduction

In December 2019, the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), causative agent of coronavirus disease 2019 (COVID-19), emerged in China [1]. It spread globally, becoming a public health emergency and a pandemic of historic dimensions [2]. Spain has been one of the most affected countries in the world in terms of absolute number of diagnosed cases and deaths per capita [3], causing a dramatic decline in donations and transplantation procedures per day, with mean numbers dropping from 7.2 to 1.2 and 16.1 to 2.1, respectively [4].

The clinical spectrum of COVID-19 ranges from asymptomatic disease to pneumonia, life-threatening complications, and ultimately death [57]. Risk factors for severe disease in the general population include older age and comorbidities [8], but the impact of chronic immunosuppression related to transplantation on COVID-19 is not well known. Despite widespread concern that COVID-19 clinical phenotypes may be more severe among solid organ transplant recipients (SOTRs) due to a poorer inflammatory response and greater organ injury, data on this population are limited to a few case series and generally small retrospective cohorts [925].

As hospitals around the world prepare for a rising and maintained incidence of COVID-19, important questions on the natural history of the disease, susceptibility of SOTRs, severity risk factors, and transplant specific management of antivirals and immunosuppressants remain unanswered [26]. This multicenter study aimed to shed light on said matters, presenting the clinical characteristics, treatments, and predictors of unfavorable outcomes (intensive care unit (ICU) admission and/or death) in 210 consecutively hospitalized adult SOTRs with COVID-19.

Materials and methods

Design and patients

We conducted a nationwide prospective observational cohort study (S1 Table for STROBE checklist) within the Spanish Network for Research in Infectious Diseases (REIPI) and the Group for the Study of Infection in Transplantation and the Immunocompromised Host (GESITRA-IC). Investigators from the 12 participating centers from different regions of Spain were asked to include all consecutive SOTR adults hospitalized with confirmed COVID-19 by real-time polymerase chain reaction (RT-PCR) assay for SARS-CoV-2 in respiratory samples, from 21 February to 6 May 2020. The baseline was the date of hospital admission, and the follow-up censoring date was 6 June 6 2020. The study protocol was approved by the Ethics Committee of Virgen del Rocío and Virgen Macarena University Hospitals (C.I. 0842-N-20), as well as by the proper institutional review board of each participating center (individual codes are listed in the Supporting Information), and complied with the Helsinki Declaration. Written informed consent was established as a mandatory requirement for all patients.

Data collection

The data source was the electronic medical record system. Anonymized data were collected using an electronic Case Report Form (eCRF) and added to a database specifically designed for this study built using Research Electronic Data Capture (REDCap) tools [27]. The registered variables included demographics, comorbidities, transplant type and date, signs and symptoms at admission, baseline laboratory tests and chest X-ray findings, complications during hospitalization, management of immunosuppression, therapeutics with purported activity against COVID-19, adjunctive strategies to modulate the host inflammatory response, and clinical outcomes.

Event of interest

The clinical outcomes of patients after 30 days follow-up were categorized into favorable (full recovery and discharged or stable clinical condition) and unfavorable (admission to ICU or death). For patients who were discharged and subsequently readmitted during the study period, only the first hospital admission episode was considered for purposes of analysis. The primary endpoint was the occurrence of an unfavorable outcome, that is, a composite of ICU admission and/or death.

Statistical approach

A descriptive analysis of all obtained data was performed. Categorical variables were presented as n (%) and continuous variable as mean (standard deviation (SD)) or median (interquartile range (IQR)) according to the normality of the distribution. We used the χ2-test, Yates’ Correction for Continuity, Student’s t-test, or Welch’s t-test to compare between-group differences, as appropriate.

To examine factors associated with unfavorable clinical outcomes, quantitative variables were dichotomized based on normal ranges and in the cut-offs associated with unfavorable outcomes in the general population [28], after addressing their effects as continuous. Univariable and multivariable logistic regression analyses were performed, and bivariate relationships between all predictors were thoroughly explored to account for potential confounding, collinear, and interaction effects.

For obtaining a reduced set of variables from the predictors identified in the univariable analysis, a multivariable analysis was carried out using three criteria to achieve the most accurate model: relevance to clinical situation, statistical significance (P < 0.10), and adequate number of events to allow for meaningful analysis. An automated backward stepwise selection was used for exclusion of variables utilizing a 5% probability threshold [29]. Gender, presence of comorbidities, lung transplantation, and immunosuppression regimens with high doses of mofetil mycophenolate (≥1080 mg/day) or prednisone (≥20 mg/day) appeared as possible confounders and were therefore included in the final model for adjustment. White blood cell count and oxygen saturation were excluded to prevent collinearity, since neutrophil count and respiratory rate were part of the model. We found no clinically meaningful interactions among the potential ones examined (sex and inflammatory markers, age, and immunity response), which were not therefore included in the model as a term.

Although there are no defined well-validated measures of immunosuppression intensity, we performed a univariable analysis to specifically assess the following as possible surrogates in accordance with prior studies: earlier time post-transplant, thoracic (lung or heart) compared to non-thoracic graft, receipt of augmented mofetil mycophenolate and prednisone dosages, and higher number of baseline maintenance immunosuppressive agents [12, 30, 31]. To further ascertain the impact of a shorter interval between transplantation and COVID-19 diagnosis, as well as the type of transplant received, on unfavorable outcome, we carried out a sensitivity analysis where the roles of the dependent and independent variables were inverted.

Analyses were done using the software package SPSS (Version 26.0. Armonk, NY: IBM Corp.). All P-values were derived from two-tailed tests, and those <0.05 were considered statistically significant.

Results

Patients’ characteristics and clinical presentation

The cohort included 210 hospitalized adult SOTRs in which SARS-CoV-2 was detected by RT-PCR from nasopharyngeal swabs (97.6%), sputum (1.9%), and endotracheal aspirate (0.5%). One hundred eight (51.4%) patients were kidney recipients, 50 (23.8%) were liver, 33 (15.7%) were heart, 15 (7.1%) were lung, and 4 (1.9%) were kidney–pancreas recipients. The median time from transplant to COVID-19 diagnosis was 6.6 (IQR 2.8–13.1) years. Six (2.9%) patients were in the first month posttransplant, 12 (5.7%) in the first three months, 18 (8.6%) in the first six months, and 29 (13.8%) in the first-year posttransplant. The median admission date was 25 March 2020, with little variability between centers (IQR from March 18 to April 1). Median length of hospitalization was 13 (IQR 7–19) days. Sixty-three (30.0%) patients experienced an unfavorable outcome at final follow-up, and 147 (70.0%) patients had a favorable course of the disease. Patients’ characteristics, of the total cohort and categorized by clinical outcome, are shown in Table 1.

Table 1. Demographics, comorbidities, clinical data, and baseline immunosuppression in all patients and by clinical outcome at final follow-up.

All (n = 210) Favorable Outcome (n = 147) Unfavorable Outcome (n = 63) P-value
Age in years, mean (SD) 63 (12) 61 (11) 65 (7) .01
 Age ≥ 70 (%) 60 (28.6) 32 (21.8) 28 (46.6) .001
Male sex (%) 148 (70.5) 104 (70.7) 44 (69.8) .90
Organ transplant (%)
 Kidney 108 (51.4) 74 (50.3) 34 (54.0) .63
 Liver 50 (23.8) 37 (25.2) 13 (20.6) .48
 Heart 33 (15.7) 24 (16.3) 9 (14.3) .71
 Lung 15 (7.1) 9 (6.1) 6 (9.5) .56
 Kidney-pancreas 4 (1.9) 3 (2.0) 1 (1.6) 1.00
Years from transplant to diagnosis, median (IQR) 6.6 (2.8–13.1) 7.1 (3.1–13.8) 5.5 (1.4–11.6) .048
Comorbidities (%)
 Diabetes mellitusa 70 (33.3) 42 (28.6) 28 (44.4) .03
 Chronic lung diseaseb 42 (20.0) 27 (18.4) 15 (23.8) .37
 Chronic cardiopathyc 54 (25.7) 31 (21.1) 23 (36.5) .02
 Chronic kidney diseased 74 (35.2) 46 (31.3) 28 (44.4) .07
 Chronic liver diseasee 29 (13.8) 18 (12.2) 11 (17.5) .32
 Cancerf 25 (11.9) 15 (10.2) 10 (15.9) .25
 Morbid obesityg 10 (4.8) 9 (6.1) 1 (1.6) .16
Presenting symptoms (%)
 Fever 140 (66.7) 101 (68.7) 39 (61.9) .34
 Rhinorrhea 14 (6.7) 13 (8.8) 1 (1.6) .10
 Odynophagia 16 (7.6) 10 (6.8) 6 (9.5) .69
 Myalgias 54 (25.7) 42 (28.6) 12 (19.0) .15
 Headache 18 (8.6) 16 (10.9) 2 (3.2) .07
 Cough 137 (65.2) 94 (63.9) 43 (68.3) .55
 Expectoration 34 (16.2) 23 (15.6) 11 (17.5) .74
 Pleuritic chest pain 11 (5.2) 10 (6.8) 1 (1.6) .22
 Dyspnea 81 (38.6) 44 (29.9) 37 (58.7) < .001
 Diarrhea 81 (38.6) 59 (40.1) 22 (34.9) .48
 Vomiting 20 (9.5) 14 (9.5) 6 (9.5) 1.00
 Impaired consciousness 14 (6.7) 6 (4.1) 8 (12.7) .046
Days from symptoms onset to diagnosis, median (IQR) 6 (3–10) 6 (3–11) 5 (3–8) .64
Baseline immunosuppression (%)
 Mofetil mycophenolate 145 (69.0) 101 (68.7) 44 (69.8) .87
 Azathioprine 5 (2.4) 4 (2.7) 1 (1.6) 1.00
 Ciclosporin 18 (8.6) 9 (6.1) 9 (14.6) .05
 Tacrolimus 156 (74.3) 110 (74.8) 46 (73.0) .78
 Sirolimus/everolimus 49 (23.3) 38 (25.9) 11 (17.5) .19
 Prednisone 146 (69.5) 97 (66.0) 49 (77.8) .09

aTreated with insulin or antidiabetic oral drugs, or presence of end-organ diabetes-related disease.

bIncluding chronic obstructive pulmonary disease, obstructive sleep apnea, and asthma.

cIncluding cardiac insufficiency, coronary heart disease, aortic aneurysm, and peripheral arterial disease.

dMild (creatinine between 1.5–2 mg/dL) or moderate/severe (creatinine > 3 mg/dL or dialysis) renal impairment.

eMild (without portal hypertension) or moderate/severe (cirrhosis, varices, encephalopathy, ascites) liver disease.

fPresence of an active solid or hematologic malignant neoplasm.

gBody mass index ≥ 40 kg/m2, or ≥ 35 kg/m2 plus experiencing obesity-related health conditions.

In brief, males accounted for 148 (70.5%) patients, the median age was 63 (IQR 51–71) years, and 28.6% were ≥70 years old. The age distribution of patients stratified by clinical outcome is shown in Fig 1. Age ≥70 years (P = 0.001) and shorter time from transplantation (P = 0.048) were associated with a poor clinical result, unlike other baseline demographics including sex or type of graft. At least one comorbidity was present in 85.2% patients, the most common being chronic kidney disease (35.2%), followed by diabetes mellitus (33.3%) and chronic cardiopathy (25.7%), all of which were more prevalent in the unfavorable outcome group. The median duration of symptoms before hospitalization was six (IQR 3–10) days, and the most common symptoms were fever (66.7%), cough (65.2%), gastrointestinal disturbances (41.0%), and dyspnea (38.6%). Dyspnea upon presentation was associated with unfavorable outcomes (P < 0.001), while other initial symptoms were analogous between groups. Similarly, there were no differences among baseline immunosuppression, where triple therapy was the preferred maintenance regimen, and the subsequent clinical evolution of COVID-19.

Fig 1. Age distribution of patients stratified by clinical outcome.

Fig 1

Twenty-eight (46.6%) out of the 60 patients aged ≥ 70 years experienced an unfavorable outcome vs. 35 (23.3%) out of 150 patients aged < 70 years.

Chest X-ray, hemodynamic, and laboratory findings

One hundred eighty-nine (90.0%) SOTRs had abnormal chest X-ray images: 85.7% within the favorable and 100% in the unfavorable outcome groups (P = 0.002). Patients with unfavorable clinical outcomes had higher respiratory rate (P < 0.001) and lower capillary oxygen saturation (P = 0.03) on initial presentation than those with a favorable disease course. We also found between-group differences regarding the baseline laboratory values. In terms of blood counts, leukocytes were higher and lymphocytes lower in the unfavorable outcome group (P-values, respectively, 0.04 and 0.03). By the same token, organ injury and inflammatory biomarkers such as creatinine (P = 0.002), lactate dehydrogenase (P = 0.001), C-reactive protein (P = 0.01), and D-dimer (P = 0.03) were higher among patients who later were admitted to the ICU or died. These results and additional clinical details are available in Table 2.

Table 2. Initial chest x-ray imaging features, hemodynamic, and laboratory values in all patients and by clinical outcome at final follow-up in all patients and by clinical outcome at final follow-up.

All (n = 210) Favorable Outcome (n = 147) Unfavorable Outcome (n = 63) P-value
Infiltrate on chest x-ray (%) 189 (90.0) 126 (85.7) 63 (100) .002
Signs (%)
 Temperature > 37.5°C 59 (28.6) 40 (27.6) 19 (31.1) .61
 Systolic blood pressure < 90 mmHg 9 (4.5) 8 (5.7) 1 (1.6) .19
 Diastolic blood pressure < 60 mmHg 20 (9.9) 13 (9.3) 7 (11.3) .66
 Hart rate > 100 bpm 48 (25.1) 32 (24.4) 16 (26.7) .74
 Respiratory rate > 20 bpm 57 (31.1) 27 (21.1) 30 (54.5) < .001
 O2 sat < 95% 61 (29.2) 36 (24.7) 25 (39.7) .03
Blood counts, median (IQR)
 White blood cells x 1000/μL 5.6 (4.0–7.8) 5.3 (3.8–7.5) 6.2 (4.4–8.2) .04
 Neutrophils x 1000/μL 4.1 (2.9–5.9) 3.7 (2.8–5.6) 4.7 (3.1–6.8) .05
 Lymphocytes x 1000/μL .8 (.5–1.0) .8 (.5–1.1) .6 (.4-.9) .03
 Platelets x 1000/μL 164 (116–214) 158 (111–215) 173 (123–215) .26
Blood counts (%)
 White blood cells > 11 x 1000/μL 16 (7.6) 8 (5.4) 8 (12.7) .13
 Neutrophils > 7.5 x 1000/μL 25 (12.3) 14 (9.9) 11 (17.7) .12
 Lymphocytes < 1 x 1000/μL 142 (68.6) 94 (64.4) 48 (78.7) .04
 Platelets < 130 x 1000/μL 67 (33.0) 48 (33.8) 19 (31.1) .71
Chemistries, median (IQR)
 Creatinine mg/dL 1.6 (1.1–2.3) 1.5 (1.0–2.2) 1.9 (1.3–2.4) .20
 AST U/L 30 (22–44) 29 (21–42) 37 (26–52) .17
 ALT U/L 23 (15–35) 21 (15–32) 27 (17–41) 1.00
 Lactate dehydrogenase U/L 270 (223–366) 255 (207–323) 349 (255–484) .001
Chemistries (%)
 Creatinine > 1.3 mg/dL 133 (63.9) 83 (57.2) 50 (79.4) .002
 AST > 30 U/L 81 (49.7) 50 (45.5) 31 (58.5) .12
 ALT > 40 U/L 37 (18.6) 22 (15.9) 15 (24.6) .15
 Lactate dehydrogenase ≥ 300 U/L 79 (40.9) 42 (31.6) 37 (61.7) < .001
Additional laboratory values, median (IQR)a
 C-reactive protein mg/L 59.6 (26.9–127.2) 44.0 (20.6–112.6) 89.7 (47.3–133.9) .14
 D-dimer ng/mL 612 (367–1399) 574 (340–1060) 799 (476–2315) .03
Additional laboratory values (%)a
 C-reactive protein ≥ 100 mg/L 69 (33.5) 40 (27.8) 29 (46.8) .01
 D-dimer ≥ 600 ng/mL 91 (52.3) 56 (47.9) 35 (61.4) .09

aThese values were not available for all patients (C-reactive protein N = 206, D-dimer N = 174).

Initial treatment approach, immunosuppression handling, and clinical outcomes

Antiviral or host-targeted therapies were administered to 200 (95.2%) patients, with the most used being hydroxychloroquine (193 (96.5%)), lopinavir/ritonavir (91 (45.5%)), and tocilizumab (49 (24.5%)). Lopinavir/ritonavir (P = 0.003) and tocilizumab (P < 0.001) during hospitalization, as well as high flow therapy or mechanical ventilation (P < 0.001), were more common practices towards severely ill patients (Table 3).

Table 3. Treatment and complications in all patients and by clinical outcome at final follow-up.

All (n = 210) Favorable Outcome (n = 147) Unfavorable Outcome (n = 63) P-value
Changes in immunosuppression (%)a
 Decrease or stop antimetabolite 110/150 (73.3) 77/105 (73.3) 33/45 (73.3) 1.00
 Decrease or stop calcineurin inhibitors 119/170 (70.0) 82/118 (69.5) 37/52 (71.2) .83
 Decrease or stop mTOR inhibitors 35/49 (71.4) 26/38 (68.4) 9/11 (81.8) .63
 Decrease or stop steroids 13/146 (8.9) 7/97 (7.2) 6/49 (12.2) .48
Viral or host-targeted medications (%)b
 Hydroxychloroquine 193/200 (96.5) 134/140 (95.7) 59/60 (98.3) .61
 Lopinavir/ritonavir 91/200 (45.5) 54/140 (38.6) 37/60 (61.7) .003
 Darunavir/cobicistat 7/200 (3.5) 4/140 (2.9) 3/60 (5.0) .74
 Interferon 6/200 (3.0) 2/140 (1.4) 4/60 (6.7) .12
 Tocilizumab 49/200 (24.5) 23/140 (16.4) 26/60 (43.3) < .001
 Azithromycin 34/200 (17.0) 28/140 (20.0) 6/60 (10.0) .09
 Methylprednisolone 20/200 (10.0) 14/140 (10.0) 6/60 (10.0) 1.00
Highest level of respiratory support (%)
 High flow/non-invasive mechanical ventilation 22 (10.5) 3 (2.0) 19 (30.2) < .001
 Intubation 24 (11.4) 0 (0) 24 (38.1) < .001
Complications during hospitalization (%)
 Acute respiratory distress syndrome 54 (26.0) 9 (6.2) 45 (72.6) < .001
 Hospital-acquired coinfections 24 (11.9) 9 (6.3) 15 (25.9) < .001
 Shock 15 (7.3) 0 (0) 15 (25.0) < .001
 Graft dysfunction 12 (5.7) 9 (6.1) 3 (4.8) .95
 Graft lost 5 (2.4) 3 (2.0) 2 (3.2) 1.00

aDenominator includes patients on the agent at baseline and known adjustment status.

bDenominator includes all patients under viral or host-targeted treatment.

Immunosuppressive therapy was modified in 82.4% of cases, mainly by discontinuing mofetil mycophenolate and reducing tacrolimus, while maintaining prednisone dosages. For each agent, antimetabolite doses were decreased or stopped in 110/150 (73.3%) patients, calcineurin inhibitors in 119/170 (70.0%), and mTOR inhibitors in 35/49 (71.4%) patients. One hundred thirty-three out of 146 (91.1%) patients had steroid doses maintained (Table 3).

Complications were more prevalent in the unfavorable outcome group compared to the non-ICU or alive patients (P < 0.001). Twelve (5.7%) patients experienced graft dysfunction at the end of follow-up, resulting in transplant loss for five patients (Table 3). Overall, 37 (17.6%) SOTRs required ICU admission, and 45 (21.4%) died. A total of ten (4.8%) patients were discharged and re-admitted during the study period.

Predictors of unfavorable outcomes

Unadjusted baseline predictors of unfavorable outcomes are shown in S2 Table. In the final multivariable analysis, adjusted for gender, comorbidities, type of transplant, and doses of immunosuppressive agents, four baseline risk factors were independently associated with increased odds of ICU admission or death: age ≥70 years (P = 0.01), respiratory rate >20 bpm (P = 0.001), lymphocytes <1 x 1000/μL (P = 0.04), and lactate dehydrogenase ≥300 U/L (P = 0.04). A forest plot presenting the respective odds ratio and 95% confidence interval is shown in Fig 2.

Fig 2. Independent baseline predictors of unfavorable outcome.

Fig 2

Among potential surrogates of immunosuppression intensity, we found a novel association between unfavorable outcomes and the temporal proximity of COVID-19 to transplantation (S3 Table). Through a series of sensitivity analyses, we further demonstrated the negative impact of an earlier post-transplant infection on clinical prognosis (Table 4), as well as the lack of association between the type of graft received and the occurrence of unfavorable outcomes (S4 Table).

Table 4. Baseline risk factors, management, and outcomes vs. time from transplantation to COVID-19 diagnosis.

All (n = 210) ≤ 6 months from transplant to diagnosis (n = 18) > 6 months from transplant to diagnosis (n = 192) P-value
Baseline risk factors (%)
 Age ≥ 70 years 60 (28.6) 4 (22.2) 56 (29.2) .53
 Diabetes mellitus 70 (33.3) 6 (33.3) 64 (33.3) 1.00
 Chronic cardiopathy 54 (25.7) 5 (27.8) 49 (25.5) 1.00
 Chronic kidney disease 74 (35.2) 5 (27.8) 69 (35.9) .49
 Dyspnea 81 (38.6) 8 (44.4) 73 (38.0) .59
 Respiratory rate > 20 bpm 57 (31.1) 7 (53.8) 50 (29.4) .13
 O2 sat < 95% 61 (29.2) 6 (33.3) 55 (28.8) .69
 Lymphocytes < 1 x 1000/μL 142 (68.6) 14 (77.8) 128 (67.7) .38
 Creatinine > 1.3 mg/dL 133 (63.9) 12 (66.7) 121 (63.7) .80
 Lactate dehydrogenase ≥ 300 U/L 79 (40.9) 8 (50.0) 71 (40.1) .44
 C-reactive protein ≥ 100 mg/L 69 (33.5) 7 (41.2) 62 (32.8) .48
 D-dimer ≥ 600 ng/mL 91 (52.3) 12 (85.7) 79 (49.4) .05
Baseline immunosuppression (%)
 Mofetil mycophenolate 145 (69.0) 15 (83.3) 130 (67.7) .17
 Azathioprine 5 (2.4) 0 (0) 5 (2.6) 1.00
 Ciclosporin 18 (8.6) 1 (5.6) 17 (8.9) 1.00
 Tacrolimus 156 (74.3) 17 (94.4) 139 (72.4) .08
 Sirolimus/everolimus 49 (23.3) 2 (11.1) 47 (24.5) .32
 Prednisone 146 (69.5) 14 (77.8) 132 (68.8) .09
Changes in immunosuppression (%)a
 Decrease or stop antimetabolite 110/150 (73.3) 8/15 (53.3) 102/135 (75.6) .12
 Decrease or stop calcineurin inhibitors 119/170 (70.0) 9/17 (52.9) 110/153 (71.9) .11
 Decrease or stop mTOR inhibitors 35/49 (71.4) 2/2 (100) 33/47 (70.2) .91
 Decrease or stop steroids 13/146 (8.9) 2/14 (14.3) 11/132 (8.3) .80
Viral or host-targeted medications (%)b
 Hydroxychloroquine 193/200 (96.5) 15/16 (93.8) 178/184 (96.7) 1.00
 Lopinavir/ritonavir 91/200 (45.5) 6/16 (37.5) 85/184 (46.2) .50
 Darunavir/cobicistat 7/200 (3.5) 1/16 (6.3) 6/184 (3.3) 1.00
 Interferon 6/200 (3.0) 1/16 (6.3) 5/184 (2.7) .98
 Tocilizumab 49/200 (24.5) 6/16 (37.5) 43/184 (23.4) .34
 Azithromycin 34/200 (17.0) 0/16 (0) 34/184 (18.5) .11
 Methylprednisolone 20/200 (10.0) 1/16 (6.3) 19/184 (10.3) .86
Highest level of respiratory support (%)
 High flow/non-invasive mechanical ventilation 22 (10.5) 3 (16.7) 19 (9.9) .62
 Intubation 24 (11.4) 5 (27.8) 19 (9.9) .06
Complications during hospitalization (%)
 Acute respiratory distress syndrome 54 (26.0) 7 (41.2) 47 (24.6) .23
 Hospital-acquired coinfections 24 (11.9) 4 (25.0) 20 (10.8) .20
 Graft dysfunction 12 (5.7) 2 (11.1) 10 (5.2) .62
 Graft lost 5 (2.4) 1 (5.6) 4 (2.1) .91
Final outcome (%)
 Intensive care unit admission 37 (17.6) 8 (44.4) 29 (15.1) .01
 Death 45 (21.4) 6 (33.3) 39 (20.3) .32
 Unfavorable* 63 (30.0) 10 (55.6) 53 (27.6) .01

aDenominator includes patients on the agent at baseline and known adjustment status.

bDenominator includes all patients under viral or host-targeted treatment.

*Clinical outcome is categorized into favorable (full recovery and discharged or stable clinical condition) and unfavorable (admission to ICU or death).

Two subgroups of the study population were considered of possible higher risk: patients suffering from graft dysfunction at day 30, and those with COVID-19 acquisition during the first month post-transplant. A detailed description of their main characteristics, outcomes, and management is provided in S5 and S6 Tables.

Discussion

In this large, prospective, nationwide study of SOTRs hospitalized with COVID-19 followed for 30 days, 17.6% required ICU admission, and the mortality rate was 21.4%. Older age, high respiratory rate, lymphopenia, and elevated level of lactate dehydrogenase at presentation were independently associated with ICU admission and/or death. Similarly, an earlier post-transplant SARS-CoV-2 infection was demonstrated as a risk factor for unfavorable outcomes.

The majority of patients were male with a median age over 60 years, conforming to prior published large nationwide cohorts of the general population hospitalized with COVID-19 [32] and the 2019 Spanish National Transplant Organization Annual Report [33].

The potential negative impact of transplantation on clinical outcomes of COVID-19 has been discussed, and the few authors that directly compared results in SOTRs and general population indicated that ICU admission and death rates were higher among the immunocompromised hosts [34, 35]. However, studies including multivariable analyses of severity risk factors among hospitalized general populations with COVID-19, though with variable durations of follow-up, showed mortality and ICU admission estimates generally comparable to the ones reported for the current SOTR cohort [3639]. The presented fatality rate in our study was also similar to the average of estimates derived from prior small and heterogeneous studies on hospitalized SOTRs [1012, 18, 30, 34] and just one percentage point higher than the single previously published multicenter prospective SOTR cohort study (20.5%) [40]. By comparing these incidence rates with those of clinical influenza for high-risk groups, we found close resemblance in the probability of ICU admission (ranging from 11.8 to 28.6%) but less likelihood of dying (between 2.9 and 14.3%) from flu among hospitalized patients [4143], which may be due to the existence of accessible and effective treatment.

Among the underlying comorbidities assessed, chronic cardiomyopathy, diabetes mellitus, and chronic kidney disease were all present in more than one fourth of the patients included and were associated with increased odds of unfavorable outcomes. This is in accordance with the previously described comorbidities associated with ICU admission or death in the general population [8, 36]. COVID-19 pneumonia at the time of diagnosis (defined by chest X-ray infiltrates) was also associated with unfavorable outcomes, as reported in general population studies [37, 38] and in the US multicenter SOTR cohort [40]. Moreover, no patients without pneumonia in our cohort required ICU admission or died at final follow-up, solidifying pneumonia as a major determinant of unfavorable outcomes in SOTRs.

The most common presenting symptoms in our cohort included fever, cough, and dyspnea, which were significantly associated with a poor clinical outcome. More atypical presentations, such as vomiting or diarrhea, were also reported among a significant proportion of SOTRs. This highlights that immunocompromised hosts often present with unusual or attenuated signs and symptoms of infection, leading to late presentations or missed diagnosis, and potentially worse results.

Among the inflammatory parameters measured at hospital admission, creatinine, lactate dehydrogenase, C-reactive protein, and D-dimer levels were higher within the unfavorable outcome group. However, the overall variation in these biomarkers was less pronounced than that observed in the general population of hospitalized patients with COVID-19 [31, 4446], which is biologically plausible. This being the case, further investigation is required to address whether the lower inflammatory response and greater immunosuppression characterizing SOTRs have impacts on COVID-19 clinical outcomes.

The fundamental implication of our study is the identification of specific and independent predictors (age ≥70 years, respiratory rate >20 bpm, lymphocytes <1 x 1000/μL, and lactate dehydrogenase ≥300 U/L) for unfavorable outcomes in hospitalized SOTRs with COVID-19, which could ease the development of future research and guidelines targeted at high-risk transplanted populations. Furthermore, we showed that an interval shorter than six months between transplantation and COVID-19 diagnosis has a negative impact on mortality and ICU admission rates, which is a risk that should be considered when deciding which patients should proceed with transplantation. Finally, although analogous to the general population, mortality in SOTRs hospitalized with SARS-CoV-2 infection is dramatically high, and the promotion of preventive strategies and treatments will be crucial to mitigate the adverse impacts of the COVID-19 pandemic in these patients.

The strengths of the present study are the strong design, the multicenter participation approach to make the results generalizable and comparable, the standardized and anonymous collection of data using an electronic Case Report Form, and the 30-day duration of follow-up. In parallel, we have faced some limitations. First, our study is centered on hospitalized patients, and thus the conclusions reached may not be applicable to those SOTRs attended in the outpatient setting. Second, testing limitations probably led to undercounting of mild or asymptomatic cases, and the ensuing selection bias towards more severely ill patients. Finally, the cases included only represent the early COVID-19 epidemic. Therefore, the potential benefit of therapies that are now implemented more widely, such as remdesivir and convalescent plasma, have not been addressed.

In summary, among hospitalized SOTR with COVID-19, ICU admission and death rates were high, and they were similar to those reported in the general population. Unfavorable outcomes were mainly driven by respiratory pathology (represented by a high breathing rate), older age, and two laboratory features at presentation, namely lymphopenia and elevated level of lactate dehydrogenase. An earlier post-transplant SARS-CoV-2 infection was established as a novel risk factor for ICU need and mortality. While this study provides preliminary indicators available upon hospital admission for identifying patients at risk of critical disease or death, it is an urgent priority to find efficacious antiviral treatments and to investigate the role of the immune response in COVID-19, especially in the population of SOTRs, where it is vital to guide suitable and prompt immunomodulatory management.

Supporting information

S1 File. The COVIDSOT working team.

(DOCX)

S2 File. Institutional review board approval number of each participating center.

(DOCX)

S1 Table. STROBE checklist.

(DOCX)

S2 Table. Univariable models of baseline risk factors associated with unfavorable outcome.

(DOCX)

S3 Table. Univariable models of potential surrogates of immunosuppression intensity vs. unfavorable outcome.

(DOCX)

S4 Table. Clinical outcomes according to the type of transplant received.

(DOCX)

S5 Table. Description of patients suffering from graft dysfunction at day 30 (n = 12).

(DOCX)

S6 Table. Description of patients with COVID-19 acquisition during the first month posttransplant (n = 6).

(DOCX)

S1 Dataset. Minimal anonymized data set necessary to replicate the study findings.

(XLSX)

Acknowledgments

COVIDSOT working team

Lead author: Elisa Cordero (elisacorderom@gmail.com).

Virgen del Rocío University Hospital-IBiS, University of Seville, Seville, Spain: Elisa Cordero, Jerónimo Pachón, Manuela Aguilar-Guisado, Judith Berastegui-Cabrera, Gabriel Bernal-Blanco, Pedro Camacho, Marta Carretero, José Miguel Cisneros, Juan Carlos Crespo, Miguel Angel Gómez-Bravo, Carmen Infante-Domínguez, Silvia Jiménez-Jorge, Laura Merino, Clara Rosso, Sonsoles Salto-Alejandre, Javier Sánchez-Céspedes, José Manuel Sobrino-Márquez. Bellvitge University Hospital, Bellvitge Biomedical Research Institute-IDIBELL, University of Barcelona, Barcelona, Spain: Jordi Carratalá, Nuria Sabé, Carme Baliellas, Oriol Bestard, Carles Diez, José Gonzàlez-Costello, Laura Lladó, Eduardo Melilli. Puerta de Hierro University Hospital, Madrid, Spain: Antonio Ramos-Martínez, Jorge Calderón-Parra, Ana Arias-Milla, Gustavo Centeno-Soto, Manuel Gómez-Bueno, Rosalía Laporta-Hernández, Alejandro Muñoz-Serrano, Beatriz Sánchez-Sobrino. Clinic University Hospital-IDIBAPS, University of Barcelona, Barcelona, Spain: Asunción Moreno, María Ángeles Marcos, Laura Linares, Marta Bodro, María Ángeles Castel, Frederic Cofán, Jordi Colmenero, Fritz Dieckmann, Javier Fernández, Dra. Marta Farrero, Miquel Navasa, Félix Pérez-Villa, Pedro Ventura. Gregorio Marañón University Hospital, CIBERES, Madrid, Spain: Maricela Valerio, Patricia Muñoz, Víctor Fernández-Alonso, Maria Olmedo-Samperio, Carlos Ortíz, Sara Rodríguez-Fernández, Maria Luisa Rodríguez-Ferrero, Magdalena Salcedo, Eduardo Zataraín. Ramón y Cajal University Hospital, Madrid, Spain: Pilar Martín-Dávila, Jesús Fortún-Abete, Juan Carlos Galán, Cristina Galeano-Álvarez, Francesca Gioia, Javier Graus, Sara Jiménez, Mario J. Rodríguez. 12 de Octubre University Hospital/i+12, CIBERCV, Madrid, Spain: José María Aguado, Mario Fernández-Ruiz, Amado Andrés, Juan F. Delgado, Carmelo Loinaz, Francisco López-Medrano, Rafael San Juan. Marqués de Valdecilla University Hospital-IDIVAL, University of Cantabria, Santander, Spain: Carmen Fariñas, Francisco Arnaiz de las Revillas, Marta Fernández-Martínez, Ignacio Fortea-Ormaechea, Aritz Gil-Ongay, Mónica Gozalo-Marguello, Claudia González-Rico, Milagros Heras-Vicario, Víctor Mora-Cuesta. La Fe University Hospital, Valencia, Spain: Marino Blanes-Julia, Rosa Blanes-Hernández, Luis Almener-Bonet, María Isabel Beneyto-Castelló, Victoria Miguel Salavert-Lletí, Aguilera-Sancho-Tello, Amparo Solé-Jover. Reina Sofía University Hospital-IMIBIC, Córdoba, Spain: Elisa Vidal, Julián de la Torre-Cisneros, Rafael León, Álvaro Torres de Rueda, José Manuel Vaquero. Virgen Macarena University Hospital-IBiS, Seville, Spain: Zaira R. Palacios-Baena, Luis E. López-Cortés, David Gutiérrez-Campos, Marie-Alix Clement, Marta Fernández-Regaña, Inmaculada López-Hernández, Natalia Maldonado-Lizarazo, Ana Belén Martín-Gutiérrez, Rocío Valverde. Badajoz University Hospital, Extremadura, Spain: Román Hernández-Gallego, Elena García de Vinuesa-Calvo.

Data Availability

All relevant data are within the paper and its Supporting information files.

Funding Statement

This study was supported by Plan Nacional de I+D+i 2013‐2016 and Instituto de Salud Carlos III, Subdirección General de Redes y Centros de Investigación Cooperativa, Ministerio de Ciencia, Innovación y Universidades, Spanish Network for Research in Infectious Diseases (REIPI RD16/0016); co‐financed by European Development Regional Fund “A way to achieve Europe”, Operative Program Intelligence Growth 2014‐2020. EC and JSC received grants from the Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación, Proyectos de Investigación sobre el SARSCoV-2 y la enfermedad COVID-19 (COV20/00370; COV20/00580). JSC is a researcher belonging to the program “Nicolás Monardes” (C-0059–2018), Servicio Andaluz de Salud, Junta de Andalucía, Spain. SS-A is supported by a grant from the Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación, Proyectos de Investigación sobre el SARS-CoV-2 y la enfermedad COVID-19 (COV20/00370).

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Decision Letter 0

Stanislaw Stepkowski

8 Feb 2021

PONE-D-21-01017

Risk factors for unfavorable outcome and impact of early post-transplant infection in solid organ recipients with COVID-19: A prospective multicenter cohort study

PLOS ONE

Dear Dr. Pachon,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

The main criticism is the quality of writing. The authors need to re-edit the entire manuscript for English and grammer.

The manuscript needs to be revised as indicated by the reviewers:

Reviewer # 1:

The manuscript is well written. I have one question: in the analysis, there were 10 patients that were discharged and readmitted during the study period. For those 10 patients, how many days between their discharge and readmission? How many of them yield unfavorable outcomes? Will the results change significantly if including their 2nd hospital admission episode in the logistic regression? Because the p-value for lactate dehydrogenase >= 300 is just slightly smaller than 0.05 and its 95% CI is also very close to 1, it is possible that a slight change in the data would change the conclusion. The same for Lymphocytes < 1, p-value close to 0.05 and 95% CI close to 1.

Another question is: some variables were “dichotomized based on normal ranges” in the analysis. I would like to know if these thresholds were determined by authors or based on some well-established or well-accepted criteria.

Reviewer # 2

This is an interesting paper. The study is well designed and with proper statistical analysis of the data.  However, the manuscript is poorly written and needs extensive editing to correct for typos and grammatical errors. I have few minor comments.

Line 159: Replace  confusion by confounding

Line 311. Clarify hypothetically

Line 327: Spell out the “abovementioned unfavorable outcomes”

Line 329: What is severity risk factor?

Line 349:   Replace “cardiopathy”  with  “cardiomyopathy”

Line 351: Add “and” after “included, “

Line 377: Replace “proved” with “showed”.

Line 385: Replace “accurate” with “strong

==============================

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: No

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript is well written. I have one question: in the analysis, there were 10 patients that were discharged and readmitted during the study period. For those 10 patients, how many days between their discharge and readmission? How many of them yield unfavorable outcomes? Will the results change significantly if including their 2nd hospital admission episode in the logistic regression? Because the p-value for lactate dehydrogenase >= 300 is just slightly smaller than 0.05 and its 95% CI is also very close to 1, it is possible that a slight change in the data would change the conclusion. The same for Lymphocytes < 1, p-value close to 0.05 and 95% CI close to 1.

Another question is: some variables were “dichotomized based on normal ranges” in the analysis. I would like to know if these thresholds were determined by authors or based on some well-established or well-accepted criteria.

Reviewer #2: This is an interesting paper. The study is well designed and with proper statistical analysis of the data. However, the manuscript is poorly written and needs extensive editing to correct for typos and grammatical errors. I have few minor comments.

Line 159: Replace confusion by confounding

Line 311. Clarify hypothetically

Line 327: Spell out the “abovementioned unfavorable outcomes”

Line 329: What is severity risk factor?

Line 349: Replace “cardiopathy” with “cardiomyopathy”

Line 351: Add “and” after “included, “

Line 377: Replace “proved” with “showed”.

Line 385: Replace “accurate” with “strong”

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

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Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: Yes: sadik A. khuder

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Apr 29;16(4):e0250796. doi: 10.1371/journal.pone.0250796.r002

Author response to Decision Letter 0


10 Mar 2021

March 10, 2021

Stanislaw Stepkowski

Academic Editor

PLOS ONE

Dear Dr Stepkowski,

We are sending the revised version of our manuscript “Risk factors for unfavorable outcome and impact of early post-transplant infection in solid organ recipients with COVID-19: A prospective multicenter cohort study (PONE-D-21-01017)”. In this revised version we have addressed all the questions and the requests of the Reviewers, which are detailed below.

Moreover, to assure the quality of writing we have made a proofreading process to re-edit the entire manuscript for English and grammar.

Regarding the Journal additional requirements, we have: 1. assured to meet the PLOS ONE´s requirements; 2. included in the Methods section the information about the participants recruitment and demographics (line 123); 3. uploaded the minimal anonymized data set as Supporting Information files (S7 File); 4. added the ORCID iD of the corresponding author in Editorial Manager; and 5. added the information on the COVIDSOT Working Team in the acknowledgments section.

We hope that this revised version of the manuscript will fulfill the requirements to be accepted for publication in PLOS ONE.

Kind regards,

Jerónimo Pachón, MD, PhD

Emeritus Professor of Medicine

Institute of Biomedicine of Seville, Virgen del Rocio University Hospital, University of Seville

Av. Manuel Siurot s/n, 41013, Seville, Spain

Email: pachon@us.es

ORCID: 0000-0002-8166-5308

Reviewer # 1:

The manuscript is well written. I have one question: in the analysis, there were 10 patients that were discharged and readmitted during the study period. For those 10 patients, how many days between their discharge and readmission? How many of them yield unfavorable outcomes? Will the results change significantly if including their 2nd hospital admission episode in the logistic regression? Because the p-value for lactate dehydrogenase >= 300 is just slightly smaller than 0.05 and its 95% CI is also very close to 1, it is possible that a slight change in the data would change the conclusion. The same for Lymphocytes < 1, p-value close to 0.05 and 95% CI close to 1.

Thanks to the Reviewer by his positive appreciation of the manuscript. Please see below the answers to the two questions.

Regarding the question on the 10 patients readmitted during the study period: i) the median of days from discharges to readmissions was 7 days (range 1 to 19); therefore, we consider the readmission as part of the same episode of SARS-CoV-2 infection; ii) only one patient needed intensive care after readmission, but he also required it during his first admission; and the 10 patients were discharged alive after the readmissions; iii) in summary, there was no change in the number of unfavorable outcome (a composite of ICU admission and/or death) in the cohort of the 210 solid organ transplantation recipients.

Another question is: some variables were “dichotomized based on normal ranges” in the analysis. I would like to know if these thresholds were determined by authors or based on some well-established or well-accepted criteria.

To examine factors associated with unfavorable clinical outcome, we dichotomized quantitative variables based on normal ranges, and after addressing their effect as continuous variables. The cut-offs used to dichotomize the variables were chosen based both in the normal values and in the cut-offs associated with unfavorable outcome when we analyzed the general population (Salto-Alejandre S et al. J Infect 2021 Feb;82(2):e11-e15. doi: 10.1016/j.jinf.2020.09.023. Epub 2020 Sep 25).

Following the Reviewer question, to clarify it we have changed the sentence of the previous manuscript as follows: “… quantitative variables were dichotomized based on normal ranges and in the cut-offs associated with unfavorable outcome in the general population [28], after addressing their effect as continuous.” (lines 155-157 of the revised manuscript). We have added this new reference [28] in the manuscript.

Reviewer # 2

This is an interesting paper. The study is well designed and with proper statistical analysis of the data. However, the manuscript is poorly written and needs extensive editing to correct for typos and grammatical errors. I have few minor comments.

Thanks to the Reviewer by his positive appreciation of the design and the data analysis.

Line 159: Replace confusion by confounding

We have replaced confusion by confounding (line 159 of the revised manuscript), as requested by the Reviewer.

Line 311. Clarify hypothetically

Besides the main objective of the study, we wanted to supply descriptive data on patients with possible poorer outcome, because of graft dysfunction (12 patients) or developing COVID-19 in the period of maximal immunosuppressive therapy as it is the first month after receiving the transplant (6 patients). In this regard “hypothetically” was used as synonymous of “possible”. To clarify it, we have substituted the sentence “Two subgroups of the study population were considered, hypothetically, of higher risk” for “Two subgroups of the study population were considered of possible higher risk” (line 309 of the revised manuscript).

Line 327: Spell out the “abovementioned unfavorable outcomes”

Following the Reviewer request we have changed it to “ICU admission and/or death” (lines 318-319 of the revised manuscript).

Line 329: What is severity risk factor?

Severity was used as synonymous of unfavorable outcome. To clarify it, we have changed this sentence as follows: “… as a risk factor for unfavorable outcome.” (lines 319-320 of the revised manuscript).

Line 349: Replace “cardiopathy” with “cardiomyopathy”

Following this request, we have replaced “cardiopathy” with “cardiomyopathy” (line 340 of the revised manuscript).

Line 351: Add “and” after “included, “

As requested, we have added “and” (line 342 of the revised manuscript).

Line 377: Replace “proved” with “showed”.

As requested, we have replaced “proved” with “showed” (line 368 of the revised manuscript).

Line 385: Replace “accurate” with “strong”.

As requested, we have replaced “accurate” with “strong” (line 376 of the revised manuscript).

Attachment

Submitted filename: Response to Reviewers_10-3-21.docx

Decision Letter 1

Stanislaw Stepkowski

14 Apr 2021

Risk factors for unfavorable outcome and impact of early post-transplant infection in solid organ recipients with COVID-19: A prospective multicenter cohort study

PONE-D-21-01017R1

Dear Dr. Pachon,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Stanislaw Stepkowski

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

None

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: The authors have addressed all of my comments appropriately. I recommend acceptance of this manuscript.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #2: Yes: Sadik Khuder

Acceptance letter

Stanislaw Stepkowski

19 Apr 2021

PONE-D-21-01017R1

Risk factors for unfavorable outcome and impact of early post-transplant infection in solid organ recipients with COVID-19: A prospective multicenter cohort study

Dear Dr. Pachón:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Stanislaw Stepkowski

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 File. The COVIDSOT working team.

    (DOCX)

    S2 File. Institutional review board approval number of each participating center.

    (DOCX)

    S1 Table. STROBE checklist.

    (DOCX)

    S2 Table. Univariable models of baseline risk factors associated with unfavorable outcome.

    (DOCX)

    S3 Table. Univariable models of potential surrogates of immunosuppression intensity vs. unfavorable outcome.

    (DOCX)

    S4 Table. Clinical outcomes according to the type of transplant received.

    (DOCX)

    S5 Table. Description of patients suffering from graft dysfunction at day 30 (n = 12).

    (DOCX)

    S6 Table. Description of patients with COVID-19 acquisition during the first month posttransplant (n = 6).

    (DOCX)

    S1 Dataset. Minimal anonymized data set necessary to replicate the study findings.

    (XLSX)

    Attachment

    Submitted filename: Response to Reviewers_10-3-21.docx

    Data Availability Statement

    All relevant data are within the paper and its Supporting information files.


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