Abstract
Cancer‐associated fibroblasts (CAFs) regulate cancer progression through the modulation of extracellular matrix (ECM) and cancer cell adhesion. While undergoing a series of phenotypic changes, CAFs control cancer–stroma interactions through integrin receptor signaling. Here, we isolated CAFs from patients with non‐small‐cell lung cancer (NSCLC) and examined their gene expression profiles. We identified collagen type XI α1 (COL11A1), integrin α11 (ITGA11), and the ITGA11 major ligand collagen type I α1 (COL1A1) among the 390 genes that were significantly enriched in NSCLC‐associated CAFs. Increased ITGA11 expression in cancer stroma was correlated with a poor clinical outcome in patients with NSCLC. Increased expression of fibronectin and collagen type I induced ITGA11 expression in CAFs. The cellular migration of CAFs toward collagen type I and fibronectin was promoted via ERK1/2 signaling, independently of the fibronectin receptor integrin α5β1. Additionally, ERK1/2 signaling induced ITGA11 and COL11A1 expression in cancer stroma. We, therefore, propose that targeting ITGA11 and COL11A1 expressing CAFs to block cancer–stroma interactions may serve as a novel, promising anti‐tumor strategy.
Keywords: cancer‐associated fibroblast, cancer, stroma interaction, collagen type I, collagen type XI α1, integrin alpha‐11, non‐small‐cell lung cancer, transforming growth factor beta
Here, we analyzed gene expression profiles of non‐small‐cell lung cancer‐associated fibroblasts (CAFs). TGF‐β1 induced production of fibronectin and collagen type I in the cancer stroma, which next promoted the combined expression of integrin α11 and collagen type XI α1 in CAFs. Integrin α11+/collagen type XI α1+ CAFs relocalized within the cancer stroma in a fibronectin‐ and collagen type I‐dependent manner and promoted cancer cell migration.
Abbreviations
- CAF
cancer‐associated fibroblasts
- CAGE
cap analysis of gene expression
- COL11A1
collagen type XI α1
- COL1A1
collagen type I α1
- DEGs
differentially expressed genes
- DMEM
Dulbecco’s modified Eagle medium
- ECM
extracellular matrix
- GO
gene ontology
- HFL‐1
human fetal lung fibroblasts
- HPF
high‐power fields
- ITGA11
integrin α11
- NSCLC
non‐small‐cell lung cancer
- TGF‐β
transforming growth factor beta
- α‐SMA
α‐smooth muscle actin
1. Introduction
Cancer‐associated fibroblasts (CAFs) constitute the key cellular components of cancer stroma in many solid cancer types and contain heterogeneous subpopulations that have distinct phenotypes and functions [1]. CAFs influence the major cancer hallmarks and promote malignant cancer cell conversion [2]. The continuous interactions of CAFs with cancer cells lead to altered fibroblast phenotypes with specific features, such as activated myofibroblasts. Furthermore, CAFs are responsible for excess extracellular matrix (ECM) deposition and potentially lead to cancer cell proliferation and migration to promote cancer development [3, 4, 5, 6]. Thus, targeting cancer‐associated stromal components, including CAFs, is essential for developing effective anti‐cancer therapies [7, 8, 9]. Although the CAF‐specific phenotype is directly related to accelerated cancer progression, its interaction with cancer cells has not been fully characterized. In this study, we focused on integrin α11 (ITGA11) and collagen type XI α1 (COL11A1) that are commonly overexpressed in non‐small‐cell lung cancer (NSCLC) tissues [10, 11]. We hypothesized that ITGA11 and COL11A1 may regulate altered CAF phenotypes and could play a role in cancer progression and associated poor prognoses. The pro‐fibrotic growth factor, transforming growth factor beta (TGF‐β) 1, accelerates trans‐differentiation to the activated myofibroblast and promotes ECM production and migration toward ECM signals, such as fibronectin [12, 13, 14, 15]. Furthermore, TGF‐β1‐stimulated collagen type I is a known ligand of ITGA11 in fibroblast [16]. TGF‐β1 stimulates both ITGA11 and COL11A1 in fibroblasts via the SMAD signaling pathway [17, 18]. Therefore, we analyzed whether ITGA11 and COL11A1 regulate CAF‐mediated bioactivity through fibronectin or collagen type I and could potentially serve as highly specific biomarkers for activated CAFs in NSCLC patients.
Integrins are heterodimeric transmembrane receptors composed of α and β subunits, and are involved in myofibroblast differentiation, cell adhesion, migration, and activation of the TGF‐β1 pathway in different fibrotic models [19, 20, 21]. The recent analysis of ITGA11, using highly selective mAbs, demonstrated expression of α11 in subsets of CAFs in various tumor types [22]. It will be interesting to determine which of the multiple collagen‐producing fibroblast subtypes in the lung [23] expresses ITGA11β1. However, ITGA11 expression was shown to be restricted to lung fibroblasts as a specific collagen receptor and was not detected in other stromal cell types [24]. While ITGA11 promotes myofibroblast differentiation and collagen reorganization, cancer–stromal ITGA11 expression has been found to be associated with cancer cell metastatic potential [17, 25, 26].
COL11A1 encodes the collagen type XI α1 chain, a minor fibrillar collagen, which is a part of the common gene signatures associated with poor clinical outcomes [27, 28] and is known as a surrogate CAF biomarker in diverse cancer stroma [29, 30, 31, 32, 33].
In this study, we investigated whether CAFs have a unique fibroblast phenotype compared to common lung fibroblasts, using bioinformatic analyses on differentially expressed genes (DEGs). We introduced cap analysis of gene expression (CAGE) to analyze the comprehensive promoter activity in CAFs and identified potential mediators of CAF‐specific candidate genes that play a pivotal role in ECM‐mediated migratory capacity and ECM‐binding integrins through cancer cell–CAF interaction. We further examined the expression and localization of ITGA11 and COL11A1 in human CAFs and tumor tissues derived from NSCLC patients to validate ITGA11 and COL11A1 as specific cancer stroma biomarker.
2. Materials and methods
2.1. Patient samples and culture of lung fibroblasts
The Ethics Committee of Juntendo University School of Medicine approved this study (No. 18‐130). All subjects provided written informed consent to participate in this experimental study, according to our institutional guidelines. The study methodologies conformed to the standards set by the Declaration of Helsinki.
A total of 16 paired control (normal lung fibroblasts) and CAF samples were obtained from resected lung tissues of patients with pathologically diagnosed NSCLC from the Department of General Thoracic Surgery of Juntendo University School of Medicine. Primary lung fibroblasts were isolated from lung specimens as previously described [34]. Briefly, CAFs were isolated from the tumor tissue core. Paired normal lung fibroblasts (control) were obtained from the portions of lung parenchymal tissues as distal as possible from any tumor cells. Human primary fibroblasts derived from the tissue (referred to as ‘P0’) exhibited a typical spindle‐shaped fibroblast‐like morphology and were confirmed positive for vimentin and negative for cytokeratin staining. Passages 4 through 6 of primary lung fibroblasts were used for chemotaxis and ELISA to exclude the effect of differences in passage number and culture conditions.
The patients ranged in age from 44 to 79 years (63.9 ± 9.6); 13 of the patients were male, and three patients were female. There were 12 patients who smoked, and four who had never smoked. Histological differentiation was classed as high in three patients, moderate in five patients, and low in eight patients. The pathological stage was diagnosed as stage 1 in 11 patients, stage 2 in two patients, stage 3 in two patients, and stage 4 in one patient. The clinical pathology was adenocarcinoma in 11 patients and squamous cell carcinoma in five patients. Relapse occurred in five patients who had undergone surgery without preoperative chemotherapy or radiation (Table S1).
HFL‐1 human fetal lung fibroblasts (catalog no. CCL‐153) and A549 human lung adenocarcinoma (catalog no. CCL‐185) cell lines were purchased from American Type Culture Collection (Manassas, VA, USA); NIH 3T3 murine embryo fibroblast (catalog no. EC93061524‐F0), and BEAS‐2B human normal bronchial epithelium (catalog no. EC95102433) were purchased from European Collection of Authenticated Cell Cultures (Salisbury, UK). Cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM; Wako Pure Chemical Industries, Osaka, Japan) supplemented with 10% FCS (Sigma‐Aldrich, St. Louis, MO, USA), 100 µg·mL–1 penicillin, 250 µg·mL−1 streptomycin, and 1 µg·mL−1 amphotericin B in a humidified atmosphere of 5% CO2. Sub‐confluent cells were removed from the dishes with 0.05% trypsin‐EDTA (Wako Pure Chemical Industries). TGF‐β1 was purchased from R&D Systems (Minneapolis, MN, USA). ERK inhibitor 3‐(2‐aminoethyl)‐5‐[(4‐ethoxyphenyl) methylene]‐2,4‐thiazolidinedione,monohydrochloride (catalog no. CAS1049738‐54‐6) was from Calbiochem (Dallas, TX, USA). Fibronectin (catalog no.11051407001) was from Roche (Mannheim, Germany). Collagen type I native protein derived from human placenta (NBP1‐97266) was from Novus Biologicals (Centennial, CO, USA). Recombinant human COL11A1 (catalog no.MBS718449_COA) was from MyBioSource (San Diego, CA, USA).
2.2. Fibroblast chemotaxis
Fibroblast‐mediated chemotaxis and A549‐mediated chemotaxis were measured using a Boyden blind‐well chamber (Neuro Probe, Gaithersburg, MD, USA) as previously described [35, 36]. In treatment experiments, TGF‐β1 (10 pm), recombinant human COL11A1, human fibronectin (20 µg·mL−1), or human collagen type I (1 µg·mL−1) was added to the cells of the upper chamber. Supernatant media from the cultured control fibroblasts or CAFs for A549‐mediated chemotaxis or human fibronectin (20 µg·mL–1), or human collagen type I (1 µg·mL–1) for fibroblast‐mediated chemotaxis was placed in the lower chamber as the chemoattractant. Chemotaxis was assessed by counting the number of cells in five high‐power fields (5HPF). Wells containing serum‐free DMEM served as negative controls.
2.3. Measurement of fibronectin, TGF‐β1, and collagen type XI α1 levels
Sub‐confluent lung fibroblasts grown in 6‐well plates were deprived of serum for 2 h and stimulated with or without 10 pm TGF‐β1. The supernatant from the cultured cells was harvested after 24 h and stored at −80 °C until analysis. Fibronectin, TGF‐β1, and COL11A1 production by the cells were determined using human fibronectin (R&D Systems), TGF‐β1 (R&D Systems), and COL11A1 (Abnova, Taipei, Taiwan) ELISA kits, respectively, according to the manufacturers' instructions.
2.4. Immunohistochemistry and scoring of histological staining in lung tissue
Lung samples were fixed in 10% neutral‐buffered formalin for 48 h, embedded in paraffin, and then cut in 4‐μm sections. Antigen retrieval was performed in EDTA/TRS buffer (pH 9.0; ITGA11) or in citrate buffer (pH 6.0; COL11A1). The sections were incubated with primary rabbit polyclonal antibody against ITGA11 (1 : 100 dilution, Ab198826; Abcam, Cambridge, UK) or COL11A1 (1 : 100 dilution, Ab64883, Cambridge, UK), followed by Dako REAL kit (K5007). Human liver cancer tissue was stained as a positive control for ITGA11 according to the manufacturer's datasheet. Human pancreatic ductal adenocarcinoma was used as the positive control for COL11A1, according to a previous report [29]. Rabbit IgG antibody (Ab172730) was used as a negative control (Fig. S1a).
The immunolabeling of markers was scored by two observers (ST and MI), without knowledge of the patient's clinical data, under a microscope at 100× magnification. Immunochemical staining for ITGA11 and COL11A1 was scored in a semi‐quantitative manner that reflected the staining intensity and percentage of area with stained cells. Staining intensity (I) was classified as 0 (no staining), +1 (weak staining), +2 (distinct staining), or +3 (strong staining). The percentage of positively stained cells (PC) was graded as 0 (0%), 1 (1–9%), 2 (10–49%), or 3 (≥ 50%). H‐scores were obtained as Σ (I × PC), where I and PC indicate the staining intensity and the percentage of cells stained at each intensity, respectively.
2.5. Western blot analysis
To standardize the culture conditions, HFL‐1 cells were cultured at a density of 0.5 × 105 mL−1. The medium was changed to serum‐free DMEM for 24 h, and cells were treated with the designated concentration of TGF‐β1, CAS1049738‐54‐6, fibronectin, or collagen type I incubated in 37 °C.
For the conditioned media experiments, A549, BEAS‐2B, and HFL‐1 cells were cultured at a density of 1 × 105 mL−1. The medium was harvested after changing to serum‐free DMEM for 48 h. HFL‐1 cells were cultured at a density of 0.5 × 105 mL−1, and the harvested medium from the respective cell types was applied; cell lysates were prepared for western blotting after 0, 24, 48, and 72 h.
Primary antibodies against the following proteins were used for western blotting: ITGA11 (1 : 1000 dilution; Ab198826), COL11A1 (1 : 800 dilution; Ab64883), α‐smooth muscle actin; α‐SMA (1 : 1000 dilution; Sigma‐Aldrich; cat. no. A2547), fibronectin (1 : 1000 dilution; Enzo Life Sciences, Inc., Farmingdale, NY, USA; cat. no. BML‐FG6010‐0100), SMAD3 (1 : 800 dilution; Cell Signaling Technology, Beverly, MA, USA; cat. no. 9513), phospho‐SMAD3 (1 : 1000 dilution; Cell Signaling Technology; cat. no. 9520), p44/42 MAPK (ERK1/2) (1 : 2000 dilution; Cell Signaling Technology; cat. no. 4695), phospho‐p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (1 : 2000 dilution; Cell Signaling Technology; cat. no. 4370), integrin α5 (A‐11) (1 : 500 dilution; Santa Cruz, Dallas, TX, USA; cat. no. sc‐166665), integrin β1 (A‐4) (1 : 500 dilution; Santa Cruz; cat. no. sc‐374429), and β‐actin (1 : 5000 dilution; FUJIFILM Wako Pure Chemical Corporation; cat. no. 281‐98721). Bound antibodies were visualized using peroxidase‐conjugated secondary antibodies and enhanced chemiluminescence with a LAS4000 image analyzer (GE Healthcare Bio‐Science AB, Uppsala, Sweden); band intensity was analyzed with an ImageQuant TL (GE Healthcare Bio‐Science AB).
2.6. Small interfering RNA‐mediated ITGA11 knockdown
Small interfering RNAs (siRNAs) targeting ITGA11 (Stealth RNAi HSS117658, HSS117660, HSS176942) were custom synthesized by Invitrogen (Life Technologies, Carlsbad, CA, USA). The sequences of the siRNA against ITGA11 were as follows:
#1 Stealth RNAi HSS117658
sense: 5′‐GGGCCAGCAGAUAGGCUUACUUUAAAGU‐3′
anti‐sense: 5′‐AAAGUAAGAGCCUAUCUGCUGGCCC‐3′,
#2 Stealth RNAi,HSS117660,
sense: 5′‐GGCUUUCCAGAAGGGUGGAAGGAAA‐3′,
anti‐sense: 5′‐UUUCCUUCCACCCUUCUGGAAAGCC‐3′,
#3 Stealth RNAi HSS176942,
sense: 5′‐GGGCCUCCCUUCAGCUGCAUCUUCA‐3′,
anti‐sense: 5′‐UGAAGAUGCAGCUGAAGGGAGGCCC‐3′.
The siRNA negative control was purchased from Invitrogen (cat. no. #12935400, Invitrogen by Life Technologies). HFL‐1 cells were plated with 1 × 105 mL−1 onto 60 mm dishes. Before transfection, the cells were grown to 50–80% confluence and medium was changed to serum‐free DMEM without antibiotics. The siRNAs were transfected into HFL‐1 cells using Lipofectamine reagent (Lipofectamine™ RNAiMAX; Lot no.2021708) at a concentration of 20 pmol·cm−2 dish. The transfection complex (siRNA and the transfection reagent mixture) were mixed in Opti‐MEM medium (Invitrogen, Life Technologies) and followed by incubation for 20 min at room temperature before added to cells. After 4–6 h, the cell culture medium was changed back to Opti‐MEM medium and incubated at 37 °C for 48 h. Transfected cells were then collected for western blotting and fibroblast chemotaxis as described above.
2.7. Retroviral vector construction and transfection
3.6 kb DNA fragment containing cDNA of human ITGA11 with a C‐terminal DYKDDDDK (FLAG) was excised from pcDNA3.1(+)_ITGA11FLAG [37] by EcoRI and XhoI digestion and subsequently treated with Klenow fragment. The 3.6 kb DNA was ligated into HincII‐digested and CIAP (calf intestine alkaline phosphatase)‐treated pBABE‐puro (Addgene, Watertown, MA, USA). The constructed plasmid was transfected into HEK293T together with packaging and envelope vectors. The resulting viruses were infected into the target cells. After infection, transfected NIH 3T3 with either pBabe‐hTERT‐puro vector or PLKO‐1‐shRNA‐hygro vectors were cultured for 4–6 days and were selected in the presence of the appropriate antibiotic for each plasmid; puromycin (1 μg·mL−1) or hygromycin (50 μg·mL−1), respectively. Treated cells were also infected with nearly 90% infection efficiency by a PRRL‐GFP virus enriched by ultracentrifugation. Transfected cells were then collected after completed transfection for western blotting and chemotaxis as described above.
The retroviral vector encoding the full‐length transmembrane form of ITGA11 cDNA was a gift from Kindai University Faculty of Biology‐Oriented Science and Technology Wakayama, Japan [37]. Additionally, a retroviral vector encoding the green florescence protein was used as a negative control [38].
2.8. CAGE analysis to identify candidate markers of CAFs
CAGE libraries were prepared using a previously described protocol [39]. Briefly, thawed human fibroblast cells were passaged every 3 days at a cell density of 1 × 105 mL−1. The second passages were used to standardize the culturing condition. The cells were harvested, and double‐stranded RNA/cDNA was produced by reverse transcription from total RNA extracts using the SuperScript III kit (Life Technologies), purified, oxidized with sodium periodate to generate aldehydes from the diols of the ribose at the cap structure and 3ʹ‐end, and biotinylated with biotin hydrazide (Vector Laboratories, Burlingame, CA, USA). Single‐stranded cDNA was recovered after digestion of the single‐stranded RNA with RNase I (Promega, Madison, WI, USA) and ligated with 3ʹ‐end and 5ʹ‐end adaptors specific to the samples. Double‐stranded cDNAs were synthesized and mixed for sequencing in one lane of an Illumina HiSeq2500 sequencer (Illumina, San Diego, CA, USA). CAGE reads including a base ‘N’ or matching a ribosomal RNA sequence (U13369.1) identified by rRNAdust were excluded [40]. The CAGE reads were aligned to the reference genome (hg19) using Burrows‐Wheeler Aligner (version 0.7.10) [39], and comparison of quantified transcription between CAFs and control lung fibroblasts was indicated only with a high mapping quality of ≥ 20 using SAMtools (version 0.1.19) [41]. The robust peak set identified in the FANTOM5 project [42, 43] was used as a reference set for the transcription start sites; the number of mapped reads starting from these regions was used as the raw signal for promoter activities.
2.9. Graphing and statistical analysis
Comparisons between the control fibroblasts and CAFs were performed with paired Wilcoxon tests when paired samples within a group were available. Two‐tailed Mann–Whitney U‐test and unpaired Student's t‐tests were used for comparisons between the two unpaired groups. Bonferroni correction and Dunnett's test were used for the grouped data. Spearman was used for the correlation. For these comparisons, each subject was considered as an individual data point. Differences were considered statistically significant at P values < 0.05. Data were analyzed using prism 7 software (GraphPad Inc., San Diego, CA, USA). Results were presented as mean ± SD of at least three independent experiments to confirm the same tendency, and a representative picture was shown. For CAGE reads, expression (activity) levels of individual promoters for differential analyses were quantified as counts per million (CPM) after normalization by the relative log expression method [41] and subjected to differential analysis using edgeR (version 3.2.4) [44] in R/Bioconductor [45]. Gene ontology (GO) enrichment analysis was performed using david software (Laboratory of Immunopathogenesis and Bioinformatics, Frederick, MD, USA) [46].
3. Results
3.1. Promoter activity profiles in cancer‐associated fibroblasts and normal fibroblasts
To demonstrate the quantitative profiles of genome‐wide CAF promoter activity, we analyzed 16 sample pairs of CAFs and their corresponding control fibroblasts using a CAGE protocol [39]. Statistically significant differentially expressed promoters (false discovery rate, FDR < 1%) (Fig. 1A) were identified in CAFs from NSCLC tissues, and 390 and 121 promoters were upregulated and downregulated, respectively (Table S2). Three distinct phenotypes between CAFs and normal fibroblasts were demonstrated by heat map analysis (Fig. 1B). We identified DEGs that altered promoter activity in CAFs vs. normal fibroblasts, including the previously reported CAF‐specific markers, POSTN and PDPN [9]. We then focused on three enriched gene candidates as CAF‐specific markers, COL11A1, ITGA11, and its ligand COL1A1 (Fig. 1). COL11A1 and ITGA11 enriched four isotype promoters, each, and COL1A1 enriched nine isotype promoters (Table S2). Two GO terms, ECM organization and cell adhesion, were identified in CAFs including ITGA11 and COL1A1. ECM organization also included COL11A1 (Table S3). Cell adhesion is one of the most significant GO terms for biological processes including the integrin‐mediated fibrogenic process, suggesting that ITGA11‐mediated interaction with the ECM promotes bioactivity of CAFs [47].
3.2. Immunohistochemical expression of integrin α11 and collagen type XI α1 in cancer stroma
Representative tumor sections showed higher ITGA11 and COL11A1 expressions in intratumoral cancer epithelium and cancer stroma compared to normal lung tissue (Fig. 2A). Appropriate positive and negative controls were stained according to the manufacturers' protocol and a previous report (Fig. S1a) [29].
Intratumoral expression levels (H‐score) of ITGA11 and COL11A1 in cancer epithelium and cancer stroma were significantly higher than those in normal lung tissue (Fig. 2B,C). Furthermore, ITGA11 expression in cancer stroma was closely correlated to the expression of COL11A1 in cancer stroma, but not to that in cancer epithelium (Table 1: P = 0.0006). In addition, the H‐score of ITGA11 in the cancer stroma was significantly higher in the relapse group than that in the nonrelapsed group following surgery (Fig. 2D), however, not in the cancer epithelium (Fig. 2E). We also analyzed the H‐score of ITGA11 in the cancer stroma and cancer epithelium at different pathological stages. In the cancer stroma, the H‐score of ITGA11 at stage 2B was significantly higher than that at stage 1A (Fig. 2F). However, the H‐score of ITGA11 in cancer epithelium was not associated with the pathological stage (Fig. 2G). In contrast, the H‐score of COL11A1 was not associated with recurrence or pathological stage (Fig. S2a–d). Thus, ITGA11 expression level in the cancer stroma involving CAFs serves as the crucial surrogate biomarker rather than that in the cancer epithelium itself.
Table 1.
Measurement | P‐value | Spearman : r | |
---|---|---|---|
Intratumoral immunostaining (H‐score) | |||
Cancer epithelium | Cancer stroma | ||
ITGA11 | ITGA11 | 0.7176 | −0.05823 |
Collagen type XI α1 | Collagen type XI α1 | 0.7984 | 0.04114 |
ITGA11 | Collagen type XI α1 | 0.3288 | 0.1564 |
Collagen type XI α1 | ITGA11 | 0.332 | −0.1554 |
Cancer stroma | Cancer stroma | ||
ITGA11 | Collagen type XI α1 | 0.0006* | 0.511 |
Cancer epithelium | Cancer epithelium | ||
ITGA11 | Collagen type XI α1 | 0.252 | 0.183 |
Immunoblotting of CAFs | |||
ITGA11 | Collagen type XI α1 | 0.1289 | 0.3971 |
P < 0.001.
3.3. Cancer‐associated fibroblast migration and expression of integrin α11, integrin α5, integrin β1, and collagen type XI α1
Since ITGA11 and COL11A1 gene expression were upregulated in CAFs compared to the control fibroblasts, the protein expression level of ITGA11, COL11A1, and the associated protein expression levels of representative fibronectin receptors were assessed using western blotting (Fig. 3A, Fig S1b). CAFs expressed higher levels of ITGA11 (Fig. 3B: P = 0.0002) and COL11A1 (Fig. 3C: P = 0.0002) compared to control fibroblasts. Meanwhile, integrin α5 and integrin β1 expression levels of CAFs did not differ from that of control fibroblasts (Fig. 3D: P = 0.1167, Fig. 3E: P = 0.9399).
Next, the altered functional phenotypes of CAFs compared to control fibroblasts were examined by observing fibroblast‐mediated migration toward fibronectin. Migration ability toward fibronectin was higher in CAFs than in control fibroblasts (Fig. 3F,G: controls: 471.2 ± 121.7 cells per five HPF, CAFs: 608.5 ± 131.2 cells per five HPF). The result was significant when two different statistical comparison methods were used, that is, by separating the two groups between the control fibroblasts and CAFs (P = 0.005, Fig. 3F), and by using the CAFs‐corresponding control fibroblasts in the same donor as the paired analysis (P = 0.0013, Fig. 3G), although the fibronectin receptor expression levels were similar in both groups.
To validate the role of ITGA11 and COL11A1 in CAF migration, we investigated whether the expression levels of ITGA11 and COL11A1 in CAFs were related to their migration. CAF migration positively correlated with ITGA11 expression levels (Fig. 3H: r = 0.562, P = 0.026), but not with the expression levels of COL11A1 (Fig. 3I: r = 0.127, P = 0.641). Released COL11A1 in harvested media from CAFs and control fibroblasts was measured using ELISA, and the effect of recombinant human COL11A1 on HFL‐1 migration was investigated. CAFs released significantly higher levels of COL11A1 compared to the control fibroblasts (Fig. S3a: P = 0.0056); however, COL11A1 did not directly stimulate HFL‐1‐mediated migration toward fibronectin (Fig. S3b).
Since collagen type I is known to be the direct ligand of ITGA11, which is overexpressed in CAFs, we also examined the effect of collagen type I on CAF migration. Migration ability toward collagen type I was higher in CAFs than in control fibroblasts (Fig. 3J: controls: 244.6 ± 51.4 cells per five HPF, CAFs: 474.4 ± 120.4 cells per five HPF).
3.4. Response of cancer‐associated fibroblasts to TGF‐β1 and fibronectin
CAFs express the activated myofibroblast marker α‐SMA which is generally induced by TGF‐β1 stimulation [9]. Since TGF‐β1 stimulates α‐SMA production and fibronectin release, and is known as the autocrine or paracrine mediator of lung fibroblast‐dependent migration [48, 49], we assessed whether TGF‐β1 (Fig. 4A) and fibronectin (Fig. 4B) change the phenotype of HFL‐1 fibroblasts. More than 10 pm of TGF‐β1 significantly stimulated ITGA11 expression after 24 h (Fig. 4C), and fibronectin rapidly stimulated ITGA11 expression after 8 h (Fig. 4D). Collagen type XI α1 showed a similar tendency to ITGA11 (Fig. 4E,F). Next, we assessed whether the response to TGF‐β1 on fibronectin release and migration of CAFs was altered. Fibronectin release from CAFs (Fig. 4G: P = 0.0007) and migration of CAFs (Fig. 4H: P = 0.0295) were significantly higher than those of the control fibroblasts. Meanwhile, TGF‐β1 significantly stimulated fibronectin release (control fibroblasts: P = 0.0044, CAFs: P = 0.0095) and migration toward fibronectin (control fibroblasts: P = 0.0001, CAFs: P = 0.0002) in both groups, although the changes in the relative increase of fibronectin release and migration following TGF‐β1 treatment between groups were the same (Fig. 4G,H). Therefore, ITGA11 and COL11A1 expression levels induced by TGF‐β1 in CAFs altered their character at the point of fibronectin release.
The response to addition of exogenous TGF‐β1 between groups did not differ, yet an enhanced migration ability was observed in CAFs (Fig. 3F,G); therefore, we measured the endogenous TGF‐β1 release. The relative production of TGF‐β1 did not differ between the groups (Fig. S4), suggesting that the activated bioactivities of CAFs were partially independent on the TGF‐β1‐SMAD3 pathway [48].
3.5. Collagen type I‐mediated integrin subunit regulation and fibroblast migration
To further elucidate the role of ITGA11‐mediated migration, we examined the effect of collagen type I on ITGA11, integrin α5, and integrin β1 expressions (Fig. 5A). The expression of ITGA11 was enhanced by collagen type I after 48 h treatment in a dose‐dependent manner (Fig. 5B); meanwhile, the expression of integrin subunits α5 and β1 did not change (Fig. 5C,D). Since fibronectin stimulated ITGA11 expression (Fig. 4D), we investigated the effect of 8 h pretreatment with fibronectin (20 µg·mL−1) on fibroblast migration toward collagen type I. The fibronectin pretreatment significantly stimulated HFL‐1 migration (Fig. S5) and enhanced CAF migration as compared to control fibroblasts toward collagen type I (Fig. 5E). Since collagen type I also stimulated ITGA11 (Fig. 5B), we investigated the effect of 48 h pretreatment with collagen type I (1 µg·mL−1) on migration toward fibronectin. Pretreatment with collagen type I (1 µg·mL−1) significantly stimulated HFL‐1 migration (Fig. S5) and enhanced CAF migration as compared to control fibroblasts toward fibronectin (Fig. 5F). These data suggest both fibronectin and collagen type I may play a role as a chemoattractant in accelerating ITGA11‐mediated CAF migration.
3.6. Regulation of ERK1/2 signal activation in cancer‐associated fibroblasts
Blockade of ITGA11 gene expression reduces ERK activation in cancer cells [25, 50]; therefore, we examined the phosphorylation status of ERK1/2 in CAFs compared to control fibroblasts (Fig. 6A). The relative increase in p‐ERK1/2 was significantly higher in CAFs than in control fibroblasts (Fig. 6B). Furthermore, we investigated whether the ERK1/2 signal was related to the increased level of CAF migration. Treatment with ERK inhibitor, CAS 1049738‐54‐6, suppressed HFL‐1 migration toward fibronectin and collagen type I (Fig. 6C,D). The inhibitory effect of the CAS 1049738‐54‐6 on TGF‐β1‐stimulated HFL‐1 migration toward fibronectin was further suppressed as inhibitor concentration increased. These results showed that the activated bioactivities of CAF migration involved the ERK1/2 signaling pathway. To elucidate the role of ERK1/2 signaling in ITGA11, COL11A1 and fibronectin regulation, ITGA11, COL11A1, and fibronectin expression levels in HFL‐1 were measured. TGF‐β1‐induced ITGA11, COL11A1, and fibronectin expression were significantly suppressed by CAS 1049738‐54‐6 (10 μm) (Fig. 6E‐G).
3.7. Phenotypic alteration of lung fibroblasts via fibroblast–lung cancer cell interaction
Cancer‐associated fibroblasts are known to promote growth, invasion, and metastasis of cancer cells via CAF–cancer cell interactions [9]. Therefore, we assessed whether the phenotypic transformation of normal lung fibroblasts to CAFs occurred by examining the response of fibroblasts to conditioned media from A549 adenocarcinoma cells, as an in vitro fibroblast–cancer cell interaction model. Conditioned media from A549 cultures significantly stimulated ITGA11 expression in HFL‐1 cells (Fig. 7A: P = 0.007) at 72 h and COL11A1 expression at 48 and 72 h (Fig. 7B: 48 h; P = 0.007, 72 h; P = 0.0317) compared to treatment with media from BEAS‐2B cells, derived from normal bronchial epithelium, obtained from autopsy of noncancerous individuals, or HFL‐1 cells. However, conditioned media from A549 cultures did not stimulate integrin α5 or integrin β1 expression (Fig. 7C,D). Next, we assessed the migration of A549 cells induced by media harvested from control fibroblasts or CAFs. Harvested media from CAFs significantly stimulated migration (P = 0.0313) of A549 compared to that of the control fibroblasts (Fig. 7E).
3.8. Effect of ITGA11 genetic modification on fibroblast features
To investigate the specific roles of ITGA11 in CAFs, we first knocked down ITGA11 in HFL‐1. Silencing ITGA11 (Fig. 8A,B) suppressed p‐ERK1/2 (Fig. 8H), migration toward fibronectin, and collagen type I (Fig. 8J,K). However, ITGA11 silencing did not affect COL11A1 (Fig. 8C), integrin α5 (Fig. 8D) or integrin β1 (Fig. 8E), fibronectin (Fig. 8F), α‐SMA (Fig. 8G), or p‐SMAD3 (Fig. 8I) expression. To investigate the specific roles of ITGA11 in fibroblasts, we next overexpressed it in NIH 3T3 cells, which caused an increase in α‐SMA expression (Fig. 8L) and stimulated migration toward fibronectin (Fig. 8M).
3.9. Schematic illustration of acquired features of the phenotype of cancer‐associated fibroblasts
TGF‐β1‐stimulated fibronectin and collagen type I production induce ITGA11 expression in fibroblasts, resulting in accelerated CAF‐mediated migration toward fibronectin and collagen type I via ERK1/2 signal without changing integrin α5 β1 expressions. These recruitments of overexpressed ITGA11 CAFs into lung cancer stroma induce cancer cell migration through cancer cell–CAF interaction. The released fibronectin induced COL11A1 production, which was accompanied by ITGA11 expression via ERK1/2 signal in cancer stroma. This leads to further CAFs with specific phenotype: ‘ITGA11+/ COL11A1+ CAF’, through the CAF–cancer cell interaction (Fig. 9).
4. Discussion
In this study, we identified 390 enriched DEGs including the previously reported CAF marker, ITGA11, and several collagen subtypes including COL11A1 and the representative ligand of ITGA11, COL1A1, as well as 121 depleted DEGs, in 16 paired samples of normal lung fibroblasts and CAFs derived from NSCLC patients. We also conducted a series of bioinformatics analyses on DEGs to explore CAF‐specific candidates associated with the increase in CAF migratory capacity. The GO analysis revealed that activated fibrotic processes, including ECM organization and cell adhesion, were enriched in CAFs, with specific DEGs including ITGA11, COL1A1, and COL11A1 in ECM organization (Table S3). Hence, increase in the expression of ITGA11 may promote CAF migration toward fibronectin and collagen type I, although COL11A1 did not act as a direct chemoattractant for fibroblast‐mediated migration. Thus, CAFs are likely controlled by transcriptional regulatory networks distinct from those in normal lung fibroblasts.
In the present study, overexpressed ITGA11 in CAF, increased migration toward collagen type I, known as the representative ligand of ITGA11, was consistent in integrin receptor‐mediated migration. In the previous study, neutralizing anti‐integrin α5 and β1 antibodies for the blockade of fibronectin receptor partially attenuated TGF‐β1‐stimulated lung fibroblast migration toward fibronectin [51]. These results suggest that some other CAF‐specific functional mechanism, perhaps through ITGA11 regulation, may be involved in fibroblast migration. Interestingly, the increasing capacity of CAF‐mediated migration toward fibronectin was associated with upregulation of the ITGA11 via ERK1/2 signaling. Furthermore, pretreatment of CAFs with fibronectin or collagen type I, which induced ITGA11 in fibroblasts, significantly enhanced migration toward both collagen type I and fibronectin, compared to the control fibroblasts. These data suggest CAFs overexpressed ITGA11, causing a specific response in their migration toward fibronectin and collagen type I, whereas integrin α5 or β1 were not affected. Previous reports using CAFs demonstrated that specific integrin receptor subtypes, including integrin α5β1 and αVβ3, are receptors for organizing fibronectin to promote directional cancer cell invasion [52, 53]. Furthermore, integrin α5β1 and αVβ3 have been shown to cross talk with other integrins, such as integrin α6β1, and they synergistically enhance cell attachment [54, 55]. Therefore, although fibroblast migration toward fibronectin is thought to involve the fibronectin receptor, integrin α5β1, we have been unable to demonstrate the nature of the direct contribution. This study provides additional evidence that overexpression of ITGA11 in CAFs enhanced their migration toward fibronectin and collagen type I. Some differential integrin‐specific cross talk between integrin α5β1‐ and ITGA11‐mediated migration toward fibronectin may involve CAF‐specific functional bioactivity, and these mechanisms could be considered as unique CAF features.
The functions of ITGA11 related to fibrotic processes have previously been reported in ITGA11 knockdown hepatic stellate cells, which resulted in reduced TGF‐β1‐induced differentiation and fibrotic characteristics, as indicated by loss of protrusions, attenuated adhesion and migration, and impaired contractility of collagen I matrices in these cells [45]. In addition, ITGA11‐deficient mice showed decreased α‐SMA expression co‐localized with ITGA11 in the cancer stroma. Stromal ITGA11 expression affects the tumorigenicity and metastatic potential of NSCLC cells, as ITGA11 overexpression in CAFs increases their interaction with cancer cells [17, 50, 56, 57]. We demonstrated that the genetic inhibition of ITGA11 not only suppressed the lung fibroblast migration only toward collagen type I but also toward fibronectin without downregulation of neither fibronectin nor integrin subunits α5 and β1. Meanwhile, the genetic overexpression of ITGA11 stimulated α‐SMA expression and migration toward fibronectin. This result suggested that ITGA11+ CAFs were the representative crucial target among the heterogenetic activated myofibroblast features.
Our results are consistent with previous studies, which showed that TGF‐β1 induces ITGA11 expression in lung fibroblasts [58], and when CAFs were exposed to TGF‐β1, we observed an increase in fibronectin release, and migration toward fibronectin in CAFs; however, the response of TGF‐β1 was not high as compared to control fibroblasts. The ITGA11 promoter is involved in regulating the function of SMAD‐binding elements [24], while ITGA11 expression in CAFs modulated transcriptional targets of the TGF‐β1 signaling pathway [25]. However, in this study, ITGA11 siRNA suppressed ERK1/2 activation but did not regulate the canonical SMAD3 signal. Alternatively, tumor cell lysates from ITGA11−/− mice reduce the levels of activated ERK1/2 compared with those from ITGA11+/+ mice [25]. Similarly, we demonstrated that ERK1/2 phosphorylation was increased in CAFs, while treatment with an ERK inhibitor, CAS 1049738‐54‐6, suppressed TGF‐β1‐induced lung fibroblast migration toward fibronectin and collagen type I, as ITGA11, COL11A1, and fibronectin expressions were reduced. Therefore, acceleration of CAF migration may be independent of the canonical TGF‐β1‐SMAD3 pathway, potentially via fibrotic lung fibroblast which did not show an enriched ITGA11 in CAGE analysis, as we previously described [48]. TGF‐β1‐induced fibronectin also resulted in excessive deposition of COL11A1, accompanied by ITGA11 expression in the cancer stroma, resulting in a CAF‐specific phenotype: ITGA11+/ COL11A1+ CAFs.
Herein, we have validated that the cancer cell‐mediated education of fibroblasts results in a change of phenotype from normal fibroblasts to CAFs. Moreover, supernatant media from lung adenocarcinoma cells (A549) strongly induced ITGA11 and COL11A1 expression, compared to that from normal epithelial cells (BEAS‐2B), without affecting expression of integrin α5 or β1 in HFL‐1. Meanwhile, the supernatant from CAFs containing abundant fibronectin significantly stimulated cancer cells (A549) migration compared to that from control lung fibroblasts. Thus, we propose the CAF‐specific phenotype is activated through interactions between cancer cells and CAFs, which results in the development of tumors by accelerating the infiltration of both CAFs and cancer cells. Both ITGA11 and COL11A1 were highly expressed in cancer stroma compared to normal lung tissue and the expression level of ITGA11 correlated with that of COL11A1, suggesting interaction with the cancer stroma. Furthermore, overexpressed ITGA11 in cancer stroma was clinically associated with high recurrence following surgical resection, as well as with progression of pathological stage in NSCLC patients. Although whether CAFs are associated with good or poor prognosis remains unclear and is contradictory in different studies [59], these results provide strengthened evidence for cross‐regulation of ITGA11 and COL11A1 in cancer stroma, suggesting that ITGA11+/ COL11A1+ CAFs may be a new candidate biomarker for clinical outcomes based on CAF‐mediated tumorigenicity in patients with NSCLC.
5. Conclusions
To the best of our knowledge, this is the first study demonstrating altered gene expression in CAFs compared to normal fibroblasts using CAGE analysis. We showed that the altered phenotypes are likely caused by cancer cell–stromal fibroblast interactions. Our results provide additional evidence that increased fibronectin‐ and collagen type I‐induced ITGA11 expression promoted the CAF migration mechanism via ERK1/2 signaling with overexpression of COL11A1, the CAF‐mediated surrogate biomarker. In addition, overexpressed ITGA11 accompanied by COL11A1 expression in cancer stroma was associated with a poor clinical outcome. These may have contributed to further activation of the cancer stroma by the interaction of the infiltrating ITGA11+/ COL11A1+ CAFs with the cancer microenvironment. The ITGA11+/ COL11A1+ CAFs subtype, therefore, may serve as a key determinant for the progression of NSCLC and may be considered for novel anti‐tumor strategies through the blockade of cancer cell–stroma interactions.
Conflict of interest
The authors declare no conflict of interest.
Author contributions
MI (Iwai) and MT were responsible for cell culture, biochemical studies, and interpretation of results. ST designed the study, and ST, MI (Iwai), and MT wrote the manuscript. HK contributed to bioinformatics analyses and manuscript writing. YH, MI (Itoh), and HK prepared the CAGE results. ST, TO, MH, AO, YH, MI (Itoh), HK, KY, KS, and KT provided technical advice and assisted in the interpretation of results. ST, TO, KK, YN, JW, IS, KT, and SO recruited patients and obtained their written informed consent. KY kindly gifted the vector to overexpress the ITGA11 gene and provided technical advice for overexpression. YK, AO, and YI prepared the vector to overexpress ITGA11 in fibroblasts. All authors critically reviewed and contributed to the final manuscript.
Peer Review
The peer review history for this article is available at https://publons.com/publon/10.1002/1878‐0261.12937.
Supporting information
Acknowledgements
We are grateful to the Laboratory of Morphology and Image Analysis and the RIKEN Genome Network Analysis Service for CAGE data production. We thank Yasushi Kogo, Yoshiyuki Tanaka, Kiyoko Kato, Satoshi Inoue, Satoshi Takeuchi, Tetsuro Oishi, and Takashi Ohtsu for technical assistance and advice, and Shimizu Kazue for technical assistance and advice of immunohistochemistry. We thank you for your encouragement to complete this project, with a heartfelt gratitude.
This study was supported by Grant‐in‐Aids for Young Scientists (Research Project Number: 15K19430 to MT); Grant‐in‐Aids for Young Scientists (Research Project Number: 19K17683 to YN); Grants‐in‐Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology, Japan (Research Project Number: 23591161 to ST). Japan Society for the Promotion of Science, a research grant from MEXT through the RIKEN Preventive Medicine and Diagnosis Innovation Program to YH; a research grant from MEXT to RIKEN Omics Science Center; and a research grant from MEXT to RIKEN Center for Life Science Technologies (Division of Genomic Technologies).
Moe Iwai and Miniwan Tulafu contributed equally to this work
Data Accessibility
All data related to this study are available from the corresponding author upon reasonable request.
References
- 1. Kalluri R (2016) The biology and function of fibroblasts in cancer. Nat Rev Cancer 16, 582–598. [DOI] [PubMed] [Google Scholar]
- 2. Orimo A & Weinberg RA (2006) Stromal fibroblasts in cancer: a novel tumor‐promoting cell type. Cell Cycle 5, 1597–1601. [DOI] [PubMed] [Google Scholar]
- 3. Hynes RO (2009) The extracellular matrix: not just pretty fibrils. Science 326, 1216–1219. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Levental KR, Yu H, Kass L, Lakins JN, Egeblad M, Erler JT, Fong SF, Csiszar K, Giaccia A, Weninger W et al. (2009) Matrix crosslinking forces tumor progression by enhancing integrin signaling. Cell 139, 891–906. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5. Pickup MW, Mouw JK & Weaver VM (2014) The extracellular matrix modulates the hallmarks of cancer. EMBO Rep 15, 1243–1253. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6. White ES (2015) Lung extracellular matrix and fibroblast function. Ann Am Thorac Soc 12 (Suppl 1), S30–33. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7. Hanahan D & Coussens LM (2012) Accessories to the crime: functions of cells recruited to the tumor microenvironment. Cancer Cell 21, 309–322. [DOI] [PubMed] [Google Scholar]
- 8. Joyce JA (2005) Therapeutic targeting of the tumor microenvironment. Cancer Cell 7, 513–520. [DOI] [PubMed] [Google Scholar]
- 9. Togo S, Polanska UM, Horimoto Y & Orimo A (2013) Carcinoma‐associated fibroblasts are a promising therapeutic target. Cancers 5, 149–169. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10. Chong IW, Chang MY, Chang HC, Yu YP, Sheu CC, Tsai JR, Hung JY, Chou SH, Tsai MS, Hwang JJ et al. (2006) Great potential of a panel of multiple hMTH1, SPD, ITGA11 and COL11A1 markers for diagnosis of patients with non‐small cell lung cancer. Oncol Rep 16, 981–988. [PubMed] [Google Scholar]
- 11. Wang KK, Liu N, Radulovich N, Wigle DA, Johnston MR, Shepherd FA, Minden MD & Tsao MS (2002) Novel candidate tumor marker genes for lung adenocarcinoma. Oncogene 21, 7598–7604. [DOI] [PubMed] [Google Scholar]
- 12. Biernacka A, Dobaczewski M & Frangogiannis NG (2011) TGF‐beta signaling in fibrosis. Growth Factors 29, 196–202. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13. Lee CG, Cho SJ, Kang MJ, Chapoval SP, Lee PJ, Noble PW, Yehualaeshet T, Lu B, Flavell RA, Milbrandt J et al. (2004) Early growth response gene 1‐mediated apoptosis is essential for transforming growth factor beta1‐induced pulmonary fibrosis. J Exp Med 200, 377–389. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Sugiura H, Ichikawa T, Liu X, Kobayashi T, Wang XQ, Kawasaki S, Togo S, Kamio K, Mao L, Ann Y et al. (2009) N‐acetyl‐L‐cysteine inhibits TGF‐beta1‐induced profibrotic responses in fibroblasts. Pulm Pharmacol Ther 22, 487–491. [DOI] [PubMed] [Google Scholar]
- 15. Togo S, Liu X, Wang X, Sugiura H, Kamio K, Kawasaki S, Kobayashi T, Ertl RF, Ahn Y, Holz O et al. (2009) PDE4 inhibitors roflumilast and rolipram augment PGE2 inhibition of TGF‐{beta}1‐stimulated fibroblasts. Am J Physiol Lung Cell Mol Physiol 296, L959–L969. [DOI] [PubMed] [Google Scholar]
- 16. Johnston EF & Gillis TE (2017) Transforming growth factor beta‐1 (TGF‐β1) stimulates collagen synthesis in cultured rainbow trout cardiac fibroblasts. J Exp Biol 15, 2645–2653. [DOI] [PubMed] [Google Scholar]
- 17. Carracedo S, Lu N, Popova SN, Jonsson R, Eckes B & Gullberg D (2010) The fibroblast integrin alpha11beta1 is induced in a mechanosensitive manner involving activin A and regulates myofibroblast differentiation. J Biol Chem 285, 10434–10445. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18. Zhang Q, Hou X, Evans BJ, VanBlaricom JL, Weroha SJ & Cliby WA (2018) LY2157299 monohydrate, a TGF‐βR1 inhibitor, suppresses tumor growth and ascites development in ovarian cancer. Cancers 10, 260. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19. Henderson NC & Sheppard D (2013) Integrin‐mediated regulation of TGFbeta in fibrosis. Biochim Biophys Acta 1832, 891–896. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20. Humphries JD, Byron A & Humphries MJ (2006) Integrin ligands at a glance. J Cell Sci 119, 3901–3903. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21. Hynes RO (2002) Integrins: bidirectional, allosteric signaling machines. Cell 110, 673–687. [DOI] [PubMed] [Google Scholar]
- 22. Zeltz C, Alam J, Liu H, Erusappan PM, Hoschuetzky H, Molven A, Parajuli H, Cukierman E, Costea DE, Lu N et al. (2019) alpha11beta1 integrin is induced in a subset of cancer‐associated fibroblasts in desmoplastic tumor stroma and mediates in vitro cell migration. Cancers, 11, 765. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23. Tsukui T, Sun KH, Wetter JB, Wilson‐Kanamori JR, Hazelwood LA, Henderson NC, Adams TS, Schupp JC, Poli SD, Rosas IO et al. (2020) Collagen‐producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis. Nat Commun 11, 1920. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24. Lu N, Carracedo S, Ranta J, Heuchel R, Soininen R & Gullberg D (2010) The human alpha11 integrin promoter drives fibroblast‐restricted expression in vivo and is regulated by TGF‐beta1 in a Smad‐ and Sp1‐dependent manner. Matrix Biol 29, 166–176. [DOI] [PubMed] [Google Scholar]
- 25. Navab R, Strumpf D, To C, Pasko E, Kim KS, Park CJ, Hai J, Liu J, Jonkman J, Barczyk M et al. (2016) Integrin alpha11beta1 regulates cancer stromal stiffness and promotes tumorigenicity and metastasis in non‐small cell lung cancer. Oncogene 35, 1899–1908. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26. Talior‐Volodarsky I, Connelly KA, Arora PD, Gullberg D & McCulloch CA (2012) alpha11 integrin stimulates myofibroblast differentiation in diabetic cardiomyopathy. Cardiovasc Res 96, 265–275. [DOI] [PubMed] [Google Scholar]
- 27. Cheon D, Tong Y, Sim M, Dering J, Berel D, Cui X, Lester J, Beach JA, Tighiouart M, Walts AE et al. (2014) A collagen‐remodeling gene signature regulated by TGF‐β signaling is associated with metastasis and poor survival in serous ovarian cancer. Clin Cancer Res 20, 711–723. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28. Wu Y‐H, Chang T‐H, Huang Y‐F, Huang H‐D & Chou C‐Y (2014) COL11A1 promotes tumor progression and predicts poor clinical outcome in ovarian cancer. Oncogene 33, 3432–3440. [DOI] [PubMed] [Google Scholar]
- 29. García‐Pravia C, Galván JA, Gutiérrez‐Corral N, Solar‐García L, García‐Pérez E, García‐Ocaña M, Amo‐Iribarren JD, Menéndez‐Rodríguez P, García‐García J, de Los Toyos JR et al. (2013) Overexpression of COL11A1 by cancer‐associated fibroblasts: clinical relevance of a stromal marker in pancreatic cancer. PLoS One 8, e78327. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Jia D, Liu Z, Deng N, Tan TZ, Huang RY, Taylor‐Harding B, Cheon D, Lawrenson K, Wiedemeyer WR, Walts AE et al. (2016) A COL11A1‐correlated pan‐cancer gene signature of activated fibroblasts for the prioritization of therapeutic targets. Cancer Lett 382, 203–214. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31. Fuentes‐Martínez N, García‐Pravia C, García‐Ocaña M, Menéndez‐Rodríguez P, Amo JD, Suárez‐Fernández L, Galván JA, De Los Toyos JD and Barneo L (2015) Overexpression of proCOL11A1 as a stromal marker of breast cancer. Histol Histopathol 30, 87–93. [DOI] [PubMed] [Google Scholar]
- 32. Raglow Z & Thomas SM (2015) Tumor matrix protein collagen XIα1 in cancer. Cancer Lett 357, 448–453. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33. Vázquez‐Villa F, García‐Ocaña M, Galván JA, García‐Martínez J, García‐Pravia C, Menéndez‐Rodríguez P, Rey CG, Barneo‐Serra L & de Los Toyos JR (2015) COL11A1/(pro)collagen 11A1 expression is a remarkable biomarker of human invasive carcinoma‐associated stromal cells and carcinoma progression. Tumour Biol 36, 2213–2222. [DOI] [PubMed] [Google Scholar]
- 34. Holz O, Zuhlke I, Jaksztat E, Muller KC, Welker L, Nakashima M, Diemel KD, Branscheid D, Magnussen H & Jörres RA (2004) Lung fibroblasts from patients with emphysema show a reduced proliferation rate in culture. Eur Respir J 24, 575–579. [DOI] [PubMed] [Google Scholar]
- 35. Bartram U & Speer CP (2004) The role of transforming growth factor beta in lung development and disease. Chest 125, 754–765. [DOI] [PubMed] [Google Scholar]
- 36. Boyden S (1962) The chemotactic effect of mixtures of antibody and antigen on polymorphonuclear leucocytes. J Exp Med 115, 453–466. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37. Yoshida K, Park A‐M, Ozaki S & Munakata H (2014) Interaction of calcium‐ and integrin‐binding protein 1 with integrin α 11 and its possible involvement in pulmonary fibrosis. Adv Biol Chem 4, 59–66. [Google Scholar]
- 38. Stewart SA, Dykxhoorn DM, Palliser D, Mizuno H, Yu EY, An DS, Sabatini DM, Chen IS, Hahn WC, Sharp PA et al. (2003) Lentivirus‐delivered stable gene silencing by RNAi in primary cells. RNA 9, 493–501. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39. Murata M, Nishiyori‐Sueki H, Kojima‐Ishiyama M, Carninci P, Hayashizaki Y & Itoh M (2014) Detecting expressed genes using CAGE. Methods Mol Biol 1164, 67–85. [DOI] [PubMed] [Google Scholar]
- 40. Li H & Durbin R (2009) Fast and accurate short read alignment with Burrows‐Wheeler transform. Bioinformatics 25, 1754–1760. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41. Anders S & Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11, R106. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42. Arner E, Daub CO, Vitting‐Seerup K, Andersson R, Lilje B, Drablos F, Lennartsson A, Rönnerblad M, Hrydziuszko O & Vitezic M (2015) Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 347, 1010–1014. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43. FANTOM Consortium and the RIKEN PMI and CLST , Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV & Lizio M et al. (2014) A promoter‐level mammalian expression atlas. Nature 507, 462–470. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44. Robinson MD, McCarthy DJ & Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139–140. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5, R80. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46. da Huang W, Sherman BT & Lempicki RA (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4, 44–57. [DOI] [PubMed] [Google Scholar]
- 47. Bansal R, Nakagawa S, Yazdani S, van Baarlen J, Venkatesh A, Koh AP, Song WM, Goossens N, Watanabe H, Beasley MB et al. (2017) Integrin alpha 11 in the regulation of the myofibroblast phenotype: implications for fibrotic diseases. Exp Mol Med 49, e396. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48. Kadoya K, Togo S, Tulafu M, Namba Y, Iwai M, Watanabe J, Okabe T, Jin J, Kodama Y, Kitamura H et al. (2019) Specific features of fibrotic lung fibroblasts highly sensitive to fibrotic processes mediated via TGF‐beta‐ERK5 interaction. Cell Physiol Biochem 52, 822–837. [DOI] [PubMed] [Google Scholar]
- 49. Togo S, Holz O, Liu X, Sugiura H, Kamio K, Wang X, Kawasaki S, Ahn Y, Fredriksson K, Skold CM et al. (2008) Lung fibroblast repair functions in patients with chronic obstructive pulmonary disease are altered by multiple mechanisms. Am J Respir Crit Care Med 178, 248–260. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50. Navab R, Strumpf D, Bandarchi B, Zhu CQ, Pintilie M, Ramnarine VR, Ibrahimov E, Radulovich N, Leung L, Barczyk M et al. (2011) Prognostic gene‐expression signature of carcinoma‐associated fibroblasts in non‐small cell lung cancer. Proc Natl Acad Sci USA 108, 7160–7165. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51. Sugiura H, Liu X, Kobayashi T, Togo S, Ertl RF, Kawasaki S, Kamio K, Wang XQ, Mao L, Shen L et al. (2006) Reactive nitrogen species augment fibroblast‐mediated collagen gel contraction, mediator production, and chemotaxis. Am J Respir Cell Mol Biol 5, 592–599. [DOI] [PubMed] [Google Scholar]
- 52. Erdogan B, Ao M, White LM, Means AL, Brewer BM, Yang L, Washington MK, Shi C, Franco OE, Weaver AM et al. (2017) Cancer‐associated fibroblasts promote directional cancer cell migration by aligning fibronectin. J Cell Biol 216, 3799–3816. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53. Miyazaki K, Oyanagi J, Hoshino D, Togo S, Kumagai H & Miyagi Y (2019) Cancer cell migration on elongate protrusions of fibroblasts in collagen matrix. Sci Rep 9, 292. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54. Ly DP, Zazzali KM & Corbett SA (2003) De novo expression of the integrin alpha5beta1 regulates alphavbeta3‐mediated adhesion and migration on fibrinogen. J Biol Chem 24, 21878–21885. [DOI] [PubMed] [Google Scholar]
- 55. Hozumi K, Teranishi Y, Enomoto S, Katagiri F, Kikkawa Y & Nomizu M (2019) Identification of specific integrin cross‐talk for dermal fibroblast cell adhesion using a mixed peptide‐chitosan matrix. J Biomater Appl 7, 893–902. [DOI] [PubMed] [Google Scholar]
- 56. Parajuli H, Teh MT, Abrahamsen S, Christoffersen I, Neppelberg E, Lybak S, Osman T, Johannessen AC, Gullberg D, Skarstein K et al. (2017) Integrin alpha11 is overexpressed by tumour stroma of head and neck squamous cell carcinoma and correlates positively with alpha smooth muscle actin expression. J Oral Pathol Med 46, 267–275. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57. Zhu CQ, Popova SN, Brown ER, Barsyte‐Lovejoy D, Navab R, Shih W, Li M, Lu M, Jurisica I, Penn LZ et al. (2007) Integrin alpha 11 regulates IGF2 expression in fibroblasts to enhance tumorigenicity of human non‐small‐cell lung cancer cells. Proc Natl Acad Sci USA 104, 11754–11759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58. Honda E, Yoshida K & Munakata H (2010) Transforming growth factor‐beta upregulates the expression of integrin and related proteins in MRC‐5 human myofibroblasts. Tohoku J Exp Med 220, 319–327. [DOI] [PubMed] [Google Scholar]
- 59. Paulsson J & Micke P (2014) Prognostic relevance of cancer‐associated fibroblasts in human cancer. Semin Cancer Biol 25, 61–68. [DOI] [PubMed] [Google Scholar]
Associated Data
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Supplementary Materials
Data Availability Statement
All data related to this study are available from the corresponding author upon reasonable request.