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All runs were carried out on RefSeq Cyanobacteria (918 genomes) using a distance threshold of 0.80 (JELLYFISH k12, 1-JI), 0.091 (Mash k12, Mash distance) and 0.069 (Mash k16, Mash distance). JI, Jaccard Index.
| k-mer engine | Time | # representatives | ||
|---|---|---|---|---|
| Strict | Loose | Strict | Loose | |
| Mash k12 | 0h56 | 1h44 | 73 | 49 |
| Mash k16 | 11h19 | 13h15 | 550 | 529 |
| JELLYFISH k12 | 3h14 | 7h30 | 73 | 52 |
