Abstract
Beef and mutton production has been aided by breeding to integrate allelic diversity for myostatin (MSTN), but a lack of diversity in the MSTN germplasm has limited similar advances in pig farming. Moreover, insurmountable challenges with congenital lameness and a dearth of data about the impacts of feed conversion, reproduction, and meat quality in MSTN-edited pigs have also currently blocked progress. Here, in a largest-to-date evaluation of multiple MSTN-edited pig populations, we demonstrated a practical alternative edit-site-based solution that overcomes the major production obstacle of hindlimb weakness. We also provide long-term and multidomain datasets for multiple breeds that illustrate how MSTN-editing can sustainably increase the yields of breed-specific lean meat and the levels of desirable lipids without deleteriously affecting feed-conversion rates or litter size. Apart from establishing a new benchmark for the data scale and quality of genome-edited animal production, our study specifically illustrates how gene-editing site selection profoundly impacts the phenotypic outcomes in diverse genetic backgrounds.
Supporting Information
The supporting information is available online at 10.1007/s11427-020-1927-9. The supporting materials are published as submitted, without typesetting or editing. The responsibility for scientific accuracy and content remains entirely with the authors.
Keywords: MSTN-edited pigs, multidomain evaluation, genetic background, editing strategy
Acknowledgements
This work was supported by the National Major Transgenic Breeding Project (2008ZX08006-003, 2011ZX08006-003, 20137X08006-003, 2014ZX08006-003, and 2016ZX08006-001), the National Key Basic Research Development Plan (2015CB943100), the Key Projects of the National Natural Science Foundation of China (30830080 and 31330074), and China Postdoctoral Foundation Project (2018M631648). We thank all researchers involved in these projects for their help and valuable suggestions. We would like to thank Prof. Xijun Yin and his research team at Yanbian University, and Prof. Yaofeng Zhao and his research team at China Agricultural University for valuable advice on this experiment. We also thank Ninghe National Original Pig Farm and the Breeding Swine Quality Supervision and Testing Center of the Ministry of Agriculture and Rural Affairs of the People’s Republic of China (Wuhan and Chongqing) for performance testing. Finally, we thank Prof. Defa Li, Prof. Junjun Wang, Dr. Shuai Zhang, and Xiaoming Song of the China Agricultural University for useful discussions related to the design and execution of net energy experiments.
Supporting Information
Compliance and ethics The author(s) declare that they have no conflict of interest. All animal experiments described in this study were reviewed and approved by the Animal Care and Use Committee of the Institute of Animal Sciences, Chinese Academy of Agricultural Sciences. All experiments were performed in accordance with the approved guidelines for animal care and management (IAS2012-11).
Footnotes
Contributed equally to this work
Contributor Information
Yulian Mu, Email: mouyulian@caas.cn.
Tad Sonstegard, Email: tad@acceligen.com.
Kui Li, Email: likui@caas.cn.
References
- Ai H, Fang X, Yang B, Huang Z, Chen H, Mao L, Zhang F, Zhang L, Cui L, He W, et al. Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing. Nat Genet. 2015;47:217–225. doi: 10.1038/ng.3199. [DOI] [PubMed] [Google Scholar]
- Boman IA, Klemetsdal G, Nafstad O, Blichfeldt T, Våge DI. Impact of two myostatin (MSTN) mutations on weight gain and lamb carcass classification in Norwegian White Sheep (Ovis aries) Genet Sel Evol. 2010;42:4. doi: 10.1186/1297-9686-42-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cotton TR, Fischer G, Wang X, McCoy JC, Czepnik M, Thompson TB, Hyvönen M. Structure of the human myostatin precursor and determinants of growth factor latency. EMBO J. 2018;37:367–383. doi: 10.15252/embj.201797883. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cyranoski D. Super-muscly pigs created by small genetic tweak. Nature. 2015;523:13–14. doi: 10.1038/523013a. [DOI] [PubMed] [Google Scholar]
- Dai Y, Vaught TD, Boone J, Chen SH, Phelps CJ, Ball S, Monahan JA, Jobst PM, McCreath KJ, Lamborn AE, et al. Targeted disruption of the α1,3-galactosyltransferase gene in cloned pigs. Nat Biotechnol. 2002;20:251–255. doi: 10.1038/nbt0302-251. [DOI] [PubMed] [Google Scholar]
- Etemadi A, Sinha R, Ward MH, Graubard BI, Inoue-Choi M, Dawsey SM, Abnet CC. Mortality from different causes associated with meat, heme iron, nitrates, and nitrites in the NIH-AARP Diet and Health Study: population based cohort study. BMJ. 2017;357:j1957. doi: 10.1136/bmj.j1957. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Food Security Information Network. (2020). Global Report on Food Crises 2020 September update: in times of COVID-19. Available from: URL: https://www.fsinplatform.org/sites/default/files/resources/files/GRFC2020_September%20Update_0.pdf.
- Fowler VR, Bichard M, Pease A. Objectives in pig breeding. Anim Sci. 1976;23:365–387. doi: 10.1017/S0003356100031482. [DOI] [Google Scholar]
- Groenen MAM, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, et al. Analyses of pig genomes provide insight into porcine demography and evolution. Nature. 2012;491:393–398. doi: 10.1038/nature11622. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Havlík P, Valin H, Herrero M, Obersteiner M, Schmid E, Rufino M C, Mosnier A, Thornton PK, Böttcher H, Conant RT, et al. Climate change mitigation through livestock system transitions. Proc Natl Acad Sci USA. 2014;111:3709–3714. doi: 10.1073/pnas.1308044111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Joulia-Ekaza D, Cabello G. Myostatin regulation of muscle development: molecular basis, natural mutations, physiopathological aspects. Exp Cell Res. 2006;312:2401–2414. doi: 10.1016/j.yexcr.2006.07.010. [DOI] [PubMed] [Google Scholar]
- Kambadur R, Sharma M, Smith TPL, Bass JJ. Mutations in myostatin (GDF8) in double-muscled belgian blue and piedmontese cattle. Genome Res. 1997;7:910–915. doi: 10.1101/gr.7.9.910. [DOI] [PubMed] [Google Scholar]
- Kang JD, Kim S, Zhu HY, Jin L, Guo Q, Li XC, Zhang YC, Xing XX, Xuan MF, Zhang GL, et al. Generation of cloned adult muscular pigs with myostatin gene mutation by genetic engineering. RSC Adv. 2017;7:12541–12549. doi: 10.1039/C6RA28579A. [DOI] [Google Scholar]
- Kang, Q., Hu, Y., Zou, Y., Hu, W., Li, L., Chang, F., Li, Y., Lu, D., Sun, Z., Zhang, R, et al. (2014). Improving pig genetic resistance and muscle production through molecular biology. In: Proceedings, 10th World Congress of Genetics Applied to Livestock Production. Vancouver.
- Kanis E, De Greef KH, Hiemstra A, van Arendonk JAM. Breeding for societally important traits in pigs. J Anim Sci. 2005;83:948–957. doi: 10.2527/2005.834948x. [DOI] [PubMed] [Google Scholar]
- Keele JW, Fahrenkrug SC. Optimum mating systems for the myostatin locus in cattle. J Anim Sci. 2001;79:2016–2022. doi: 10.2527/2001.7982016x. [DOI] [PubMed] [Google Scholar]
- Kolkman I, Opsomer G, Aerts S, Hoflack G, Laevens H, Lips D. Analysis of body measurements of newborn purebred Belgian Blue calves. Animal. 2010;4:661–671. doi: 10.1017/S1751731109991558. [DOI] [PubMed] [Google Scholar]
- Lee SJ, McPherron AC. Myostatin and the control of skeletal muscle mass. Curr Opin Genets Dev. 1999;9:604–607. doi: 10.1016/S0959-437X(99)00004-0. [DOI] [PubMed] [Google Scholar]
- Li ZC, Li P, Liu DW, Li DF, Wang FL, Su YB, Zhu ZP, Piao XS. Determination of the energy value of corn distillers dried grains with solubles containing different oil levels when fed to growing pigs. J Anim Physiol Anim Nutr. 2017;101:339–348. doi: 10.1111/jpn.12445. [DOI] [PubMed] [Google Scholar]
- Matika O, Robledo D, Pong-Wong R, Bishop SC, Riggio V, Finlayson H, Lowe NR, Hoste AE, Walling GA, Del-Pozo J, et al. Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs. PLoS Genet. 2019;15:e1007759. doi: 10.1371/journal.pgen.1007759. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McPherron AC, Lawler AM, Lee SJ. Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member. Nature. 1997;387:83–90. doi: 10.1038/387083a0. [DOI] [PubMed] [Google Scholar]
- McPherron AC, Lee SJ. Double muscling in cattle due to mutations in the myostatin gene. Proc Natl Acad Sci USA. 1997;94:12457–12461. doi: 10.1073/pnas.94.23.12457. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Merks JWM, Mathur PK, Knol EF. New phenotypes for new breeding goals in pigs. Animal. 2012;6:535–543. doi: 10.1017/S1751731111002266. [DOI] [PubMed] [Google Scholar]
- Mosher DS, Quignon P, Bustamante CD, Sutter NB, Mellersh CS, Parker HG, Ostrander EA. A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs. PLoS Genet. 2007;3:e79. doi: 10.1371/journal.pgen.0030079. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pan DK, Zhang L, Zhou YR, Feng C, Long C, Liu X, Wan R, Zhang J, Lin AX, Dong EQ, et al. Efficient production of omega-3 fatty acid desaturase (sFat-1)-transgenic pigs by somatic cell nuclear transfer. Sci China Life Sci. 2010;53:517–523. doi: 10.1007/s11427-010-0080-x. [DOI] [PubMed] [Google Scholar]
- Park KM, Kim DJ, Paik SG, Kim SJ, Yeom YI. Role of E2F1 in endoplasmic reticulum stress signaling. Mol Cells. 2006;21:356–359. [PubMed] [Google Scholar]
- Qian L, Tang M, Yang J, Wang Q, Cai C, Jiang S, Li H, Jiang K, Gao P, Ma D, et al. Targeted mutations in myostatin by zincfinger nucleases result in double-muscled phenotype in Meishan pigs. Sci Rep. 2015;5:14435. doi: 10.1038/srep14435. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ren H, Zheng X, Chen H, Li K. Transgenic pigs carrying a synthesized fatty acid desaturase gene yield high level of co-3 PUFAs. Agric Sci China. 2011;10:1603–1608. doi: 10.1016/S1671-2927(11)60157-0. [DOI] [Google Scholar]
- Schuelke M, Wagner KR, Stolz LE, Hübner C, Riebel T, Kömen W, Braun T, Tobin JF, Lee SJ. Myostatin mutation associated with gross muscle hypertrophy in a child. N Engl J Med. 2004;350:2682–2688. doi: 10.1056/NEJMoa040933. [DOI] [PubMed] [Google Scholar]
- Sokoła-Wysoczańska E, Wysoczański T, Wagner J, Czyż K, Bodkowski R, Lochyński S, Patkowska-Sokoła B. Polyunsaturated fatty acids and their potential therapeutic role in cardiovascular system disorders—A review. Nutrients. 2018;10:1561. doi: 10.3390/nu10101561. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stinckens A, Luyten T, Bijttebier J, Van den Maagdenberg K, Dieltiens D, Janssens S, De Smet S, Georges M, Buys N. Characterization of the complete porcine MSTN gene and expression levels in pig breeds differing in muscularity. Anim Genets. 2008;39:586–596. doi: 10.1111/j.1365-2052.2008.01774.x. [DOI] [PubMed] [Google Scholar]
- Sutherland C. Belgian blue cattle. Vet Record. 1985;117:645–646. doi: 10.1136/vr.117.24.645. [DOI] [PubMed] [Google Scholar]
- Tanihara F, Takemoto T, Kitagawa E, Rao S, Do LTK, Onishi A, Yamashita Y, Kosugi C, Suzuki H, Sembon S, et al. Somatic cell reprogramming-free generation of genetically modified pigs. Sci Adv. 2016;2:e1600803. doi: 10.1126/sciadv.1600803. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walker RG, Czepnik M, Goebel EJ, McCoy JC, Vujic A, Cho M, Oh J, Aykul S, Walton KL, Schang G, et al. Structural basis for potency differences between GDF8 and GDF11. BMC Biol. 2017;15:19. doi: 10.1186/s12915-017-0350-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang K, Ouyang H, Xie Z, Yao C, Guo N, Li M, Jiao H, Pang D. Efficient generation of myostatin mutations in pigs using the CRISPR/Cas9 system. Sci Rep. 2015;5:16623. doi: 10.1038/srep16623. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang K, Tang X, Xie Z, Zou X, Li M, Yuan H, Guo N, Ouyang H, Jiao H, Pang D. CRISPR/Cas9-mediated knockout of myostatin in Chinese indigenous Erhualian pigs. Transgenic Res. 2017;26:799–805. doi: 10.1007/s11248-017-0044-z. [DOI] [PubMed] [Google Scholar]
- Wójcik S, Engel WK, McFerrin J, Askanas V. Myostatin is increased and complexes with amyloid-β within sporadic inclusion-body myositis muscle fibers. Acta Neuropathol. 2005;110:173–177. doi: 10.1007/s00401-005-1035-3. [DOI] [PubMed] [Google Scholar]
- Yu LZ, Tang H, Wang JY, Wu Y, Zou LL, Jiang YL, Wu CX, Li N. Polymorphisms in the 5′ regulatory region of myostatin gene are associated with early growth traits in Yorkshire pigs. Sci China Ser C. 2007;50:642–647. doi: 10.1007/s11427-007-0075-4. [DOI] [PubMed] [Google Scholar]
- Yu Z, Li Y, Meng Q, Yuan J, Zhao Z, Li W, Hu X, Yan B, Fan B, Yu S, et al. Comparative analysis of the pig BAC sequence involved in the regulation of myostatin gene. Sci China Ser C. 2005;48:168–180. doi: 10.1007/BF02879670. [DOI] [PubMed] [Google Scholar]
- Zhang GF, Liu DW, Wang FL, Li DF. Estimation of the net energy requirements for maintenance in growing and finishing pigs. J Anim Sci. 2014;92:2987–2995. doi: 10.2527/jas.2013-7002. [DOI] [PubMed] [Google Scholar]
- Zheng Y, Li Y, Satija A, Pan A, Sotos-Prieto M, Rimm E, Willett WC, Hu FB. Association of changes in red meat consumption with total and cause specific mortality among US women and men: two prospective cohort studies. BMJ. 2019;365:l2110. doi: 10.1136/bmj.l2110. [DOI] [PMC free article] [PubMed] [Google Scholar]