Skip to main content
PLOS One logoLink to PLOS One
. 2021 Jun 9;16(6):e0252266. doi: 10.1371/journal.pone.0252266

Hierarchical effects facilitate spreading processes on synthetic and empirical multilayer networks

Casey Doyle 1,*, Thushara Gunda 1, Asmeret Naugle 1
Editor: Irene Sendiña-Nadal2
PMCID: PMC8189515  PMID: 34106983

Abstract

In this paper we consider the effects of corporate hierarchies on innovation spread across multilayer networks, modeled by an elaborated SIR framework. We show that the addition of management layers can significantly improve spreading processes on both random geometric graphs and empirical corporate networks. Additionally, we show that utilizing a more centralized working relationship network rather than a strict administrative network further increases overall innovation reach. In fact, this more centralized structure in conjunction with management layers is essential to both reaching a plurality of nodes and creating a stable adopted community in the long time horizon. Further, we show that the selection of seed nodes affects the final stability of the adopted community, and while the most influential nodes often produce the highest peak adoption, this is not always the case. In some circumstances, seeding nodes near but not in the highest positions in the graph produces larger peak adoption and more stable long-time adoption.

Introduction

The diffusion and spread of new practices is a crucial part of the evolution of societies and organizations, particularly in regards to the adoption innovations or procedural updates. Due to a litany of structural and cultural barriers, however, innovation spread can be slow and eventually lead to the death of the new innovation. This situation creates a stagnant environment that stifles production and growth; thus identifying and removing these barriers to adoption is crucial for the efficiency and health of long-standing organizations. Complicating any study on this type of structure, however, are the various channels that communications can flow through, often including formal hierarchical networks as well as informal social and working connections. In this paper, we focus on the differences between these formal and informal structures and how innovation adoption is affected by the characteristics of each. Additionally, we look at selection strategies for the seed nodes, or innovators within the system, and compare the costs and benefits of having highly influential nodes as the first adopters in the system.

The basic mechanism of innovations adoption is captured by the Dosage Model [1], an elaboration on the classic epidemiological susceptible-infected-recovered (SIR) [2] model that is extended to contain more detail and capture the memory aspects of social contagion. As an agent based model with memory effects, this framework is particularly well-suited to studying how small changes in the dynamics of state transitions or structural differences in the system affect the overall success of a new idea. This functionality is critical to studying innovation diffusion, as the significant role of peer communication [3] and the influence of clustering [4] are essential to properly modeling the adoption processes. Further, the application of organizational change provides a strong incentive to study the minimal commitment or seed size that still leads to wide-scale adoption on the network, a hallmark of epidemiological models that focus on identifying critical nodes in the epidemic process [5, 6].

Using epidemiological models as a base system for social simulations in this way has become a common practice, and the concept of social contagion has proven to be a useful tool in modeling how information and even innovation travels in complex networks [710]. Still, while the spreading processes themselves have striking similarities, the two applications differ greatly in the end goal of the simulation; epidemiological models are generally concerned with identifying the nodes that can be immunized or the structures that resist spreading whereas social systems are often concerned with nodes and structures that facilitate spread. Further, the varied and overlapping forms of possible communication between nodes opens the door for different scales and methods of transmission, leading naturally to the study of multilayered and interconnected networks. These underlying structures can better capture the effects of differing types of communications, such as leadership communications, that affect the final decision making process of individuals [10].

Due to their high degree of applicability to real world systems, multilayered networks and their effects on classical spreading models have become a field of great interest in recent years [1113], in particular for the ability of the interconnected structure to allow for epidemics under parameterizations that would stifle spreading on a monoplex network [1416]. This popularity has led to studies of different types of structures, rules, and metrics to measure the effects of the multilayered structures, with topics ranging from network resiliency to lexical, negotiation, and opinion spread applications [1721]. In particular, efforts to find the optimal immunization strategies using SIR dynamics in multilayered networks have shown differences in optimal immunization strategies depending on the underlying network and distribution of immunizations across layers [2224]. Further studies on the topic have shown epidemics that are unable to cross layers on networks lacking sufficient interconnectedness [25], and even effects on spreading in the case of competing diseases and procedurally-generated networks [26, 27]. Finally, other dynamic systems including the threshold model [28] and prisoner’s dilemma [21] have also found optimal strategies for multilayered networks, and the problem has even been solved via mean-field considerations [29].

The theoretical groundwork laid by these prior studies has paved the way for more detailed considerations of the topic using empirical data to inform the network structures. In this paper we take this approach, building a system that considers real-world effects in two ways; first, we use the Dosage Model rather than a pure SIR consideration, allowing us to tailor the dynamics to our system of focus. In particular, this paper is interested in innovation and procedural change in large, multi-level organizations, and as such the memory aspect of the dosage model is useful for creating the resistance towards change characteristic of individuals in corporate hierarchies. Second, we define our network structure in terms of a management hierarchy, first building synthetic networks that mirror what can be found in the real world, taking data from the Sandia National Laboratories (SNL) organizational structure to build two competing networks that represent different modes of social interaction and possible spread. This allows us to tailor our model to a specific real-world process and compare different communication channels and seed selection strategies to determine the optimal choices for sustained adoption.

Methods

Multilayer dosage model

The dynamics of the model discussed here are based on the Dosage Model proposed by Dodds and Watts [1], incorporating the same three states as the SIR model (susceptible, infected, and removed) with a more complicated state transition scheme (see Fig 1). Rather than flat probabilities controlling the state transitions, nodes undergo transitions based on how many doses towards switching they have received in a given memory window, T. Each node i has an individual dosage threshold, di*, drawn from a Gaussian distribution with a mean of 1, a standard deviation of 0.5, and a minimum di*>0, that controls their eligibility for state transitions and allows for a heterogeneous reluctance towards switching throughout the population. Each micro-time step, defined as one interaction, a node is selected to be active in the role of ‘listener’. A subsequent node is selected from that node’s connections to be the ‘speaker’. If the ‘speaker’ is in the infected (I) state, they confer a random dose, drawn from a Gaussian distribution with a mean of 0.5〈d*〉 and a standard deviation of 0.25〈d*〉, to the ‘listening’ node. If the ‘speaker’ is not in state I then they simply confer a dose of 0. Each node keeps a memory record of its last T doses (for this paper, we use a memory window T = 5 to set a characteristic time for our simulations), and upon receiving a new dose (including null doses), ‘listening’ nodes check their cumulative dose at that time, Dt,i=t0=t-Tt0=tdt0 (where dt0 is the dosage the node received during transaction t0) against their dosage threshold. If they are in state S and Dt,i>di*, they transition to state I. Conversely, if they are in state I and Dt,i<di*, they have a probability r = 1/T, or r = 0.2, of entering the removed state (R), signifying that they have abandoned the new innovation due to perceived lack of support. This removal rate is chosen for its symmetry with the infection memory time scale, however a brief investigation of varying removal rates is also conducted. In our formulation state R is absorbing, with no probability of removed nodes to become infected again, though they remain active nodes in the simulation capable of conferring doses of 0 to other nodes. As such, the only possible ending state of the system in the long time limit is the eradication of the I state as that is the only system state with no further possible state changes. This is a common feature of SIR models, of which the model used here is an elaboration on and thus follows similar trajectories. An important difference, though, is that by utilizing the memory window T > 1 the system obtains the ability to enter metastable states that provide long tails on surviving active communities [1], the effect of which is analyzed here. In this paper we utilize only a single value for T with limited testing on varying values of r as the sensitivity of these values has been studied previously, showing that increasing the size of the memory window increases the tail end of the simulation and persistence of the I state exponentially. By holding this value constant in our simulations we can investigate other values that affect the peak spread and persistence of the infection, revealing structures that favor these metastable states. Further discussion of the state behavior over time as well as plots of the state transitions and prior work on parameter sensitivity is included in S1 Appendix.

Fig 1. Dosage model state transitions.

Fig 1

Each node has three possible states, S, I, and R. Nodes gain doses towards switching states every time they ‘listen’ to another node; doses are nonzero if the ‘speaking’ node is in state I and zero otherwise. When a node in state S has a cumulative dosage over the past T time steps, Di,t, greater than its threshold, di*, it switches to state I. When a node in state I has a cumulative less than its threshold, it has a 20% change per activation to switch to state R. State R is absorbing.

We further modify the basic version of the dosage model above to fit the scenario of corporate or organizational change by adding in multi-layer considerations to the dynamics. The original dosage model is already well-suited to the memory and peer-influence heavy, slow moving nature of this sort of large scale organization of interest, but the addition of management layers requires extra consideration for the differences in peer communications versus communications from supervisors. To this end, we define multilayer communication rules such that intra-layer communications (e.g., staff to staff) and upward inter-layer communications (e.g., staff to manager) are defined as outlined above. Downward inter-layer communications (e.g., manager to staff), however, have greater weight if the manager is pushing adoption. To accomplish this, if a node from a higher layer in the graph is in the I state, when they speak to a node from a lower layer they always confer a dose equal to the downstream node’s threshold. This guarantees an immediate switch for the downstream node, but leaves them vulnerable to permanent removal if they were not already familiar with the adopted idea or do not have their adoption reinforced by others within T time steps, fitting with organizational mandates that can easily lose staff interest if not supported widely.

The selection of this model is motivated by the application of organizational innovation spread, with each of the compartments and state transitions being chosen for those purposes. In this work, the S state represents nodes that are unaffiliated with and have not adopted the new innovation or procedure. The I compartment represents adopters that are actively promoting the innovation, and the R compartment represents the rejection of the innovation and its promotion. The R state is made absorbing in the model, meaning that nodes cannot leave that state, to account for the disenchantment and active resistance that is seen in innovation adoption [30], as well as to reflect the specific context of management and organizational innovation rejection, where there are many common causes and perspectives to explain lasting innovation rejection [31]. The focus of this model is on the social and hierarchical pressures on the adoption of the innovation, and as such the infection has no internal drive for individuals to remain in that state. In application, this means that the modeled innovation would not have a positive efficiency that would allow it to be self-sustaining or to resurge once rejected. Since our study is on the effects of these social pressures, using a neutral framework allows us to examine only those effects on the system. Additionally, our time scale and static view of the innovation does not allow for long term effects such as the evolution of the innovation, further indicating the likelihood of long term rejection. Finally, there is no state transition directly from S to R under the assumption of good faith on the part of the agents. Nodes in state I and nodes in state R behave identically in their outward interactions, both passing on zero dose in their interactions, but only nodes in state R that have negative firsthand experience with the innovation present the active resistance to deny a large social pressure coming either from a superior node or multiple peers.

For each model run, seeding is handled randomly by layer, testing the spreading due to a minimal seed (1 node) and that of the introduction of an established community (0.015N nodes). Nodes are randomly selected and are all within the layer of interest for that test, i.e., staff seeding will place either 1 or 0.015N nodes in state I randomly throughout the staff layer but will track infection spread across all layers.

Synthetic networks

First, as a baseline for our investigation, we create synthetic versions of the multilayer manager networks to understand the primary effects and effect sizes expected of the dosage model with advantaged managerial layers. To this end, we start with a base layer built from a random geometric graph (RGG) [32], chosen for its community oriented structure, with Nstaff = 1000 nodes, dim = 2, p = 2, and r = (〈k〉/(Nstaff * π))1/2, where the average degree 〈k〉 = 20 to match empirical data and Nstaff is the size of the base layer of the hierarchy. This graph is then partitioned into c different communities, where c = .06Nstaff or 60 communities in this case to match the management representation at the first level of the empirical networks. Communities are partitioned using the Fluid Communities algorithm [33], chosen for its ability to assign a consistent number of communities across many runs. Doing so fully divides the system, leading to a skewed normal distribution of community sizes with an average community size of 16.667 nodes, a standard deviation of 5.642, and with skewing parameter α = 2.6, location ξ = 10.417 and scale ω = 8.420. Then a second layer for the management nodes is spawned as an independent network before being interconnected to the staff network with interlayer edges connecting each manager node to the staff nodes in a single downstream community. The number of nodes in the management layer is exactly equal to the number of partitions created in the staff layer, m = c = 0.06N. This is exactly analogous to the interlayer connections used in the empirical datasets, while the intralayer connections between the managers are created independently based on various random graph models including no connections, full connections, RGG, Erdős–Rényi (ER) random graphs [34], and Barabási–Albert random graphs [35] with the same 〈k〉 = 20 as well as ER graphs of varying 〈k〉. For these networks, 〈k〉 = 20 was chosen to match the empirical networks described in the next section. Further explanation of the community size distribution and synthetic network creation are captured in S1 Appendix and S1 Sample code respectively.

Empirical networks

After the analysis of various synthetic network structures, we study the spreading effects on an empirical hierarchical dataset based on the employment structure of Sandia National Laboratories. Access to this data was overseen by the Sandia National Laboratories data governance committee, and all data was fully anonymized before being made available to the authors. From this data we build two separate graphs, one that contains the strict corporate organization lines at the time of study, referenced here as the Line-Org graph, and one that leverages the time individuals spent working together over a two year period prior to draw connections between nodes, referenced here as the Project/Task (Project) graph. Both networks use the same population pool and thus have the same number of layers, N = 1942 and nl = 5 respectively. The first layer has N1 = 1787 nodes in it, while the second has N2 = 115 nodes, third has N3 = 33 nodes, fourth N4 = 6 nodes, and the final layer has just a single node N5 = 1. The data to reconstruct these networks are included as Supporting Files. Additionally, S1 Appendix contains a replication of the key analysis done here on an existing publicly available manufacturing dataset for comparison [36, 37].

Line-Org graph

The first emprical graph used contains the straight organizational structure based on official department listings and job titles. For intra-layer connections, this means that each staff member is connected to everyone else in their department and have no connections outside of it (i.e., a staff member is department 1111 will be connected only to all other staff members in department 1111). Similarly, a manager will be connected to all other managers within their group on the second layer (i.e., a manager for department 1111 will be connected only to other managers for groups 111X). This continues up the chain until all 5 layers in the dataset are accounted for. The inter-layer connections are controlled via the management lines, for example the manager of 1111 is connected downstream to all staff in department 1111 and upstream to the second level manager of group 111X. In this way, the network is controlled against isolated nodes through the single connecting director at the top of the chain in level 5. As shown in Fig 2(A) and Table 1, this network is highly modular with each individual department being very insular and relying on the upper layers to connect groups to each other. It has extreme clustering coefficients due to the high number of triangles within the intra-layer connections and low closeness centrality due to the lack of connection between groups. Finally, it is characterized by a fairly consistent degree distribution across layers as the groups are designed to be reasonably similar in size.

Fig 2. Empirical network visualizations.

Fig 2

Nodes are color coded by layer: staff nodes are pink, level 1 managers are green, level 2 managers are light blue, level 3 managers are orange, and level 4 is dark blue. A: Visualization of the Line-Org network. B: Visualization of the Project network.

Table 1. Network statistics of empirical networks by layer.
Line-Org Project
Ccentrality k Cclustering Ccentrality k Cclustering
Layer 1 0.16 20.05 0.99 0.27 13.75 0.29
Layer 2 0.19 20.85 0.60 0.35 93.21 0.46
Layer 3 0.22 9.73 0.57 0.36 100.09 0.64
Layer 4 0.27 12.33 0.48 0.31 11.33 0.39
Layer 5 0.26 7.0 1.0 0.26 9.0 0.58
Total 0.16 19.89 0.97 0.28 19.91 0.31

Shows various centrality and clustering statistics for each empirical network to inform on the structure, where 〈Ccentrality〉 is the average closeness centrality, 〈k〉 is the average degree, and 〈Cclustering〉 is the average clustering coefficient for the nodes in each layer.

Project graph

As mentioned, the second empirical graph uses the same nodes as the first, but alters the intra-layer connections such that they are defined by time spent concurrently on a project rather than strict corporate structure. This way, this graph represents a more social network that considers how interactions may occur organically between regular work confluence rather than through mandates by defined organizations within the company. To accomplish this, we draw edges between any two individuals that have worked on projects together for more than 370 hours total (regardless of how many projects the time is split between); the threshold of 370 hours was chosen to preserve the overall average degree from the Line-Org network. The inter-layer connections remain the same, as manager communication to staff maintains a level of corporate formality that is well represented by the direct line from superior to subordinate. In comparison to the Line-Org network, Fig 2 and Table 1 show that the Project network is highly centralized with the first two management levels serving as the major hub tying the majority of nodes together. It has higher closeness centralities across the board, while the degree distribution skews heavily towards the management layers as they are generally the nodes that have worked most broadly and for the longest periods of time within the network. In general, the clustering coefficient is significantly lower than the Line-Org network except in the dense management layers where clustering coefficients are comparable.

Results and discussion

Using the above network bases and spreading processes, we model innovation adoption in large scale hierarchical systems. In particular, we look at what structures and parameterizations lead to the largest general adoption as well as the most robust population against removal and subsequent death of the innovation. Simulations are run for 1, 000, 000 micro-timesteps (∼ 1000 epochs where each epoch is defined as N interactions) and averaged over 1000 runs.

Synthetic networks

For the synthetic network outlined above, we first study the baseline case of the dosage model on a RGG with no management layer yielding a maximum concurrent adoption of Imax = 0.027 with only a single seed node and Imax = 0.141 with 0.015N seed nodes. Comparing these numbers to those where a management layer is included in the system, shown in Table 2, a significant increase in spreading with the multilayer structure is evident. Even without connections between the managers, the max adoption using only a single staff node doubles, and with a larger seed shows a 68% increase. Further, the performance of staff-seeded simulations is notably worse than using manager nodes as the seed, where over ∼ 10% of the population is reachable with only a single seed and to nearly half of the total population with a seed size of 0.015N. These trends are further emphasized when connections are created between the management nodes, in particular showing significant increases in the case of low seed sizes, where adoption in the system nearly doubles again with the addition of connections between managers. When managers are the seed, this further increase is even greater, and while more modest in the cases of large seeds the effect is still pronounced.

Table 2. Maximum adoption for different manager connection strategies.

Staff Seed Manager Seed
Minimal Seed Seed 0.015N Minimal Seed Seed 0.015N
Isolated 0.056 0.237 0.107 0.346
Fully Connected 0.095 0.354 0.265 0.550
RGG, 〈k〉 = 20 0.098 0.357 0.241 0.472
BA, 〈k〉 = 20 0.101 0.359 0.228 0.473
ER, 〈k〉 = 20 0.102 0.355 0.230 0.470

The average maximum adoption over 1000 runs on the synthetic network with various manager connection strategies. Average degrees of 20 were chosen for the management layer to match the base layer and the overall average of the empirical networks.

Interestingly, the structure of the connections between managers tends to matter less than the presence of the connections in the first place, as there are not significant differences between the three random graph structures tested, and further relatively minor differences exist between the fully connected manager layer and the randomly connected management layers. Table 2 shows only a small benefit towards the fully connected graph over the random graphs when the seed is on the management layer, while there is actually a very slight suppressive effect on the staff seeded nodes. This small suppression is minor enough to be within the error of the simulations, but may also reflect the management nodes’ ability to insulate themselves from the downstream nodes when they are highly connected. In the synthetic structure used here, management nodes are connected to an average of 16.67 downstream nodes, so while a certain level of connection between them allows for a more effective leveraging of the management spreading advantage, a high level of connection quickly attaches them to other mangers more so than downstream nodes. With a fully connected management layer, this means there are 3.6 times more management connections than there are staff connections, and when the seed is entirely contained in the staff layer this can diminish the speed with which the innovation moves across layers. On the contrary, this problem becomes moot if the seed is contained on the management layer, and the advantages of spreading on the higher network layer manifest more. In fact, as shown in Fig 3(A), with an ER connected management layer the maximum adoption increases for low connection densities between the management nodes and then levels off after a probability of connection of ∼0.3, corresponding to the point at which the average inter-layer degree of the management layer (〈k〉 = 18) is greater than the average intra-layer degree. The exception to this is the case of a large management seed, where increased connection of managers can no longer hinder the spread for that layer and thus only supports the overall adoption on the network. Finally, we look at the stability of the spread across system sizes, where Fig 3(B) shows that the average maximum infected population is stable for systems both smaller and larger than the N = 1000 case used in prior analysis. This analysis is done using a seed size of 1.5%, matching the seed size in in both the preceding analysis and that performed on the empirical networks. Additionally, the number of managers and the communities they represent is modulated for the system size, c = 0.06N and the average degree across all layers of the network is constant at 〈k〉 = 20 by keeping manager connections minimal.

Fig 3. Synthetic network spread.

Fig 3

Plot of average max adoption over 1000 runs. IM is the maximum adoption, p is the probability of connection for every pair of managers, and N is the overall system size. Management connections are made via ER random graph method. A: Average maximum adoption versus management connection density over 1000 runs. B: Average maximum adoption vs sysem size. Seed size is proportional total network size, set at 1.5% of the network. All networks have a number of managment communities c = 0.06N and an average node degree of 〈k〉 = 20.

Empirical networks

SI dynamics

To begin the analysis of multilayered dosage spreading on empirical networks, we first look at a simplified form with a removal rate of 0. This modification effectively makes the dynamics that of an SI system where the I state is absorbing, so rather than evaluating based on maximum adoption we consider the time taken to reach consensus where all nodes are in the I state. The results of this basic consideration can be see in Fig 4, showing that for all cases except those with weak seeding, the Project network outperforms the Line-Org network. When the seed is small and not highly influential (< 5 staff or < 2 level 1 managers), the Project network is liable to get stuck in metastable states and take extreme times to reach consensus, likely due to the higher probability of the seeding being placed in a remote, near-isolated node in this network. Additionally, the advantages of the Project network are most apparent in the later portions of the simulation as the system reaches high levels of consensus, indicating that the spreading in this type of network has faster convergence with a shorter tail despite the presence of near-isolated nodes. This is likely due to the fact that spreading is faster to near-isolated nodes (characteristic of the Project network) than to near-isolated clusters (characteristic of the Line-Org netowrk), as there is no group consensus to combat. If a node is attached only to one other node, then it is sufficient to wait for the Poisson selection process to activate that node after its sole neighbor has switched states, whereas a near-isolated community can self-perpetuate for long periods of time by becoming akin to an echo chamber. Finally Fig 4 shows that outside of extremely small seeds, there is virtually no difference between the spreading rate using level 1 managers as seeds versus level 2 managers on the Project network, while the Line-Org network shows a fairly flat advantage for each level increase in the system. This effect is also traceable to the structural differences in the layers of each network, as Table 1 and Fig 2 show that the Project network has an extremely dense central connection of nodes comprising largely of the first two management layers, while the Line-Org network is more evenly spread. The results in Fig 4 indicate that tapping into this dense core is of utmost importance to increased consensus as it allows spreading to occur throughout the elevated layers quickly and thus minimizing the difference between seeding among the management layers. Conversely, the tree-like layout of the Line-Org network emphasizes the more central position that each layer elevation grants and thus provides a flat benefit for each additional layer.

Fig 4. Time to consensus in SI framework.

Fig 4

Time to different levels of consensus with an absorbing I state for varying seed sizes, averaged over 1000 runs. A: Time to 100% consensus. B: Time to 90% consensus. C: Time to 74% consensus. D: Time to 50% consensus.

SIR dynamics

Extending to the SIR framework with a removal rate of r = 0.2, we perform a similar analysis as with the SI formulation. Fig 5 shows that the advantages of the Project network remain with the addition of the state R, providing a larger max adoption than the same dynamics on the Line-Org network. The only comparable value is with the bare minimum seed—a single staff node—and even there, unlike in the SI tests, the Project network slightly outperforms the Line-Org network. This change is due to the high likelihood of innovation death in the case of a single seed node in the SIR framework; in both networks a large amount of simulations will never spread past the seed node. This early death is even more likely in the Line-Org network since these isolated nodes have communities surrounding them to extinguish the innovation, while near-isolates in the Project network have only a single node with the ability to affect their state. In contrast, the strict SI framework does not allow for innovation death, and thus having the seed node have a higher number of neighbors simply speeds up the initial phase of the system coming to consenus. Further, outside of this fringe case the Project network provides significant advantages to the spreading process; at the top end, the Project network reaches over 70% of the total population while the Line-Org is unable to reach even 30% at its max. Further, Fig 5 also shows the benefit of the multilayered formulation leveraging the increased power of the higher layers, as the ‘Flat Network’ tests use the same edge requirements but remove the extra spreading rules for the management layers (effectively preserving the structure but ‘flattening out’ the network into a monoplex network). In this case, the maximum adoption in the system falls dramatically; for the Line-Org network, effectively no adoption occurs at all, and while the Project network has slightly more success it is still unable to produce a significant population of adopters without the multilayer support.

Fig 5. Max adoption with SIR dynamics.

Fig 5

Shows the average maximum population of nodes in state I for each combination of network, seed size, and seed level, averaged over 1000 runs. Includes a ‘flat network’ consideration, where management advantages are removed. A: Average max reach in the Line Org network structure. B: Average max reach in the Project network structure.

Finally, for innovation adoption understanding the longevity of the adopted population is just as important as the peak, leading us to consider the tail end of the adoption cycle and analyze not just the maximum number of individuals to reach state I but the long-time stability of this population. To this end, Fig 6 shows that the population of nodes in state I is considerably more stable in the Project network than the Line-Org network, leveling out much sooner and maintaining a long-time average of ∼10% of the maximum population versus the Line-Org’s ∼ 1% without fully leveling off even out to 3500 epochs. Similarly, Fig 6(C) shows that in addition to being more stable over time, the adoption process on the Project network is more resilient to higher removal rates in the system, showing minimal difference between removal rates above r ∼ 0.1. On the Line-Org network, however, the system continues to be sensitive to increases in the removal rate up to much higher values of r. Additionally, Fig 6(A) shows that for both networks the multilayer structure also adds stability to the network, maintaining a higher infected percentage in the long time limit than the flat network counterparts and reaching this long-time limit sooner for both networks. Finally, the seeding population’s effect on the long-time stability of the adopted populations should be noted, as while Fig 5 shows that the maximum population of adopted individuals increases when seeds are in the higher levels of the network, Fig 6(A) shows that seeding lower layers produces a more stable population in the long time limit. Even when accounting for the differences in maximum infection between the layers by looking at the raw percentage of nodes in state I (shown in Fig 6(B)), the effect causes all layers to have similar long-time limit expectations, with a slight advantage towards seeding the second layer rather than the highest layer. Further, in the medium time regime, despite having a significantly lower maximum adoption, the staff layer seeding displays the largest infected population for a large amount of time due to its later peak and slower decay. This is likely due to the vulnerability of the initial adopters on the network; they are the first to spread the innovation and thus have a large impact on its reach, but they are also most at risk for permanent removal since there are extremely limited opportunities for reinforcement in the early time regime. As such, placing the seeds in the positions of the greatest reach allows for a greater initial impact, but limits the long time viability of the innovation due to the likelihood of losing such a key node in the process. Considering this, it may be more prudent to seed nodes near but not in positions of power, so that by the time the key nodes are infected there is more likely to be a small community to prevent their total loss from the population. This is supported by Fig 6(C), where the largest long-time population is the second layer in the system, where the optimal balance of initial impact without the loss of the most central nodes can be achieved.

Fig 6. Stability of I population in long-time scenarios.

Fig 6

All seeds are size 0.015N and all data points are averaged over 1000 runs. A: The surviving percentage of the maximum infected population over time. B: The raw percentage of nodes in state I over time. C: Percent of the maximum adopted community remaining at time t = 515 with varying removal rates.

Seed selection strategies

In the preceding sections we utilize a random seeding scheme to start the innovation spread in our simulations, a method that provides a good general view of how the layers perform when utilized in large sample sizes, but for total network reach is not an optimal seeding strategy. Additionally, there is a relationship between the demographics, connectedness, and power that an individual has within a system and their willingness to become an early adopter of an innovation [38, 39]. Thus, from both the perspectives of truly understanding the network potential and to capture this behavioral correlation, it is important to consider more sophisticated seeding strategies. To this end, we repeated the simulations above utilizing three different network centrality measures that are commonly considered for diffusion optimization [40]: node degree [41], VoteRank [42], and onion layer (an enhanced KCore number) [43]. For these tests, to reduce the randomness and allow for more direct comparison of the algorithms being tested, we coordinate execution utilizing a set of 1000 unique random seeds, one for each run, that allows for identical node initialization and attempted transmission pathways. Thus, for each run that the algorithms are applied to, the nodes in the comparison networks have the same thresholds and attempt to give the same dosages along the same pathways.

The results, in Fig 7, show how these seed selection strategies perform on the two networks. First, the Line-Org network remains much less conducive to spread than the Project network for all strategies. The overall conclusion that the more centralized co-working network is more conducive to spread holds, and even with more advanced selection strategies the Line-Org network never reaches a majority of the network adopted. Additionally, there are further indications suggesting that seeding near but not in high powered nodes can match or even beat the performance of seeding at the top of the network. When utilizing a non-minimal seed, for all three selection strategies seeding to Level 1 managers outperforms seeding to Level 2 managers on the Line-Org network and seeding staff outperforms seeding Level 1 managers on the Project network. The prior result is weakly present even in random selection, Fig 5(A), but due to the large number of poorly connected staff the latter result is only visible when using the strategies in Fig 7. Further, identifying well-connected individuals massively improves the performance with minimal seeds, nearly matching the performance of large seed sizes when applied at the manager levels. Finally, when comparing the flat network to one that retains the hierarchical scheme but seeds across all layers, the advantages of leveraging hierarchical spreading mechanics are stark. In every case, the average maximum adoption is more than doubled. While targeted management seeding can be nearly matched just by identifying nodes using centrality measures, leveraging their influence over downstream nodes changes the dynamics of the system greatly in favor of widespread adoption.

Fig 7. Max adoption with SIR dynamics.

Fig 7

Shows the average maximum population of nodes in state I for each combination of network, seed size, and seed level, and selection algorithm averaged over 1000 runs. Includes a ‘flat network’ consideration, where management advantages are removed and an ‘all’ seed level where seeding is done by highest connected node regardless of level. A-C: Average max reach in the Line Org network structure for different seed selection strategies. D-F: Average max reach in the Project network structure for different seed selection strategies.

One of the keys to these hierarchical structures that allows them to respond so well to targeted seeding is the central node leadership of the working communities. As noted in [44], classical seed selection strategies often perform poorly on heavily community oriented networks and need a way to ensure the dispersal of seeds throughout the network. By targeting seeding at or near the management structure in these hierarchical networks, we are able to seed leader nodes with distinct communities, preventing issues of community overlap. Even when not actively targeting the managers, though, this phenomenon can be leveraged due to the manager skew in the network structure allowing leader nodes to be easily identified by the seed selection algorithms.

Conclusion

In social science studies, isolation of groups and lack of institutional support is known to stifle spread and prevent new ideas from taking hold over current preferences [45, 46]. In practice, however, many institutional organizations show a high degree of clustering and hierarchy that creates a complex, multilayer structure for innovations to flow through. This makes the details of the best pathways and connections for optimal performance difficult to parse. Even when considered in a multiplex or multilayer format, prior studies have focused on random connections and simple spreading mechanics to lay the groundwork for how interconnection between layers can affect the overall dynamics. Here we extend these prior studies and present the case of a sharper focus on real-world systems based on large scale organizations and management hierarchies by building both synthetic and empirical hierarchical networks and running a variation of the Dosage model on them. In doing so we show that adding management layers to networks can have extreme effects on spreading processes, doubling the maximum reach of the social contagion on community-based RGG networks, as well as showing that while connections within the management layer can increase the spread, only a small level of connectivity between managers is sufficient to maximize this effect in most cases. In the case of empirical networks, we build two networks based on the same real-world dataset, one based on corporate defined administrative groups (the Line-Org network) and the other based on the working connections created by time spent in collaboration (the Project network). We show that the centralized properties of the Project network are far more conducive to innovation flow than the heavily clustered structure of the Line-Org network, and that the addition of multilayer management considerations is essential to having widespread innovation adoption on the network. Further, we show that contrary to common intuition, using the most highly influential nodes as the seed does not always provide the best long term outcomes. Highly influential nodes are occasionally outperformed by carefully selected nodes at lower levels, and even when they do provide maximal peak adoption the long term stability of the adopted population is maximized by choosing nodes near the most influential nodes instead. This is a result of seed nodes being highly vulnerable to removal, which can permanently hinder the population of adopted nodes. In the networks used here, this means seeding the system with either staff or level 1 managers rather than the highest ranked nodes in the system.

These results advocate strongly for the increased effectiveness of innovation flow when both management structure and personal working relationships are leveraged rather than traditional methods of spreading via administrative lines, and suggest a more bottom-up rather than top-down approach for the adoptions of new innovations or policies. Although the analysis of the Polish Manufacturing dataset yielded similar patterns to the SNL dataset (see S1 Appendix), there are many areas that bear further investigation including alternative spreading processes or networks from other organizations. Additionally, the network frameworks here separate out the administrative and working networks into two distinct structures, but one of the strengths of multilayer networks is the ability to handle different types of communication modes between nodes. Here we consider the case of two different inter-connected networks with differing intra-layer connections, but they could be combined into a single more complex structure with both the interconnected network layers of the management hierarchy and the multiplex communication channels within each layer. Finally, the dosage model used here has a strict and individual form of memory for the dosage accumulation, but more complex and cognitively informed model memory handling for individuals in the presence of hierarchical power dynamics similar to other recent efforts in the area would be another possible avenue for future work [47]. Still, the work presented here yields another step towards the full picture of real-world spreading, where communication channels are not always clean and distinct such as in the case of large-scale organizations adopting new innovations.

Supporting information

S1 Appendix. Background plots, elaborations, and Polish manufacturing data.

Analysis of the hierarchical spreading model on a Polish Manufacturing network as a secondary empirical source to supplement the presented SNL data.

(ZIP)

S1 Sample code. Synthetic network creation python script.

Sample code for generating the hierarchical synthetic networks used in this paper. The code is written in Python and uses the NetworkX package for the creation of established network structures and community detection implementation [48].

(ZIP)

S1 Fig

(TIF)

S2 Fig

(TIF)

S3 Fig

(TIF)

S4 Fig

(TIF)

S5 Fig

(TIF)

S1 File. SNL node list.

This file contains a list of node ID’s and network levels for all nodes used in the Line-Org and Project networks.

(CSV)

S2 File. SNL Line-Org edge list.

This file contains a list of all edges between the nodes (contained in S1 File) for the Line-Org network.

(CSV)

S3 File. SNL Project edge list.

This file contains a list of all edges between the nodes (contained in S2 File) for the Project network.

(CSV)

S4 File. Polish Manufacturing node list.

This file contains a list of node ID’s and network levels for all nodes used in the Line-Org and Project networks.

(CSV)

S5 File. Polish Manufacturing Line-Org edge list.

This file contains a list of all edges between the nodes (contained in S5 File) for the Line-Org network.

(CSV)

S6 File. Polish Manufacturing emails.

This file contains a list of all edges between the nodes and the number of emails (contained in S5 File) for the Email network.

(CSV)

Data Availability

All relevant data are within the paper and its Supporting information files.

Funding Statement

Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. This paper describes objective technical results and analysis. Any subjective views or opinions that might be expressed in the paper do not necessarily represent the views of the U.S. Department of Energy or the United States Government. The Sandia National Laboratories website is https://www.sandia.gov/ The funders helped procure the data for this work.

References

  • 1. Dodds PSS, Watts DJJ. A generalized model of social and biological contagion. Journal of theoretical biology. 2005;232(4):587–604. doi: 10.1016/j.jtbi.2004.09.006 [DOI] [PubMed] [Google Scholar]
  • 2. Kermack WO, McKendrick AG. A Contribution to the Mathematical Theory of Epidemics. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 1927;115(772):700–721. doi: 10.1098/rspa.1927.0118 [DOI] [Google Scholar]
  • 3. Valente T. Network models of the diffusion of innovations. Computational and Mathematical Organization Theory. 1996;2(2):163–164. doi: 10.1007/BF00240425 [DOI] [Google Scholar]
  • 4. Kuandykov L, Sokolov M. Impact of social neighborhood on diffusion of innovation S-curve. Decision Support Systems. 2010;48(4):531–535. doi: 10.1016/j.dss.2009.11.003 [DOI] [Google Scholar]
  • 5. Krackhardt D. Social Networks and Liability of Newness. Trends in organizational behavior. 1996;3:159–173. [Google Scholar]
  • 6. Abrahamson E, Rosenkopf L. Institutional and competitive bandwagons: using mathematical modeling as a tool to explore innovation diffusion. Academy of Management Review. 1993;18(3):487–517. doi: 10.5465/amr.1993.9309035148 [DOI] [Google Scholar]
  • 7. Pastor-Satorras R, Castellano C, Van Mieghem P, Vespignani A. Epidemic processes in complex networks. Reviews of Modern Physics. 2015;87(3):925–979. doi: 10.1103/RevModPhys.87.925 [DOI] [Google Scholar]
  • 8. Levy DA, Nail PR. Contagion: A theoretical and empirical review and reconceptualization. Genetic, social, and general psychology monographs. 1993. [PubMed] [Google Scholar]
  • 9. Karsai M, Iñiguez G, Kaski K, Kertész J. Complex contagion process in spreading of online innovation. Journal of The Royal Society Interface. 2014;11(101):20140694. doi: 10.1098/rsif.2014.0694 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10. Iyengar R, Van den Bulte C, Valente TW. Opinion Leadership and Social Contagion in New Product Diffusion. Marketing Science. 2011;30(2):195–212. doi: 10.1287/mksc.1100.0566 [DOI] [Google Scholar]
  • 11. Boccaletti S, Bianconi G, Criado R, del Genio CI, Gomez-Gardeñes J, Romance M, et al. The structure and dynamics of multilayer networks. Physics Reports. 2014;544(1):1–122. doi: 10.1016/j.physrep.2014.07.001 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. De Domenico M, Granell C, Porter MA, Arenas A. The physics of spreading processes in multilayer networks. Nature Physics. 2016;12(10):901–906. doi: 10.1038/nphys3865 [DOI] [Google Scholar]
  • 13. Salehi M, Sharma R, Marzolla M, Magnani M, Siyari P, Montesi D. Spreading Processes in Multilayer Networks. IEEE Transactions on Network Science and Engineering. 2015;2(2):65–83. doi: 10.1109/TNSE.2015.2425961 [DOI] [Google Scholar]
  • 14. Wang H, Li Q, D’Agostino G, Havlin S, Stanley HE, Van Mieghem P. Effect of the interconnected network structure on the epidemic threshold. Physical Review E. 2013;88(2):022801. doi: 10.1103/PhysRevE.88.022801 [DOI] [PubMed] [Google Scholar]
  • 15. Cozzo E, Baños RA, Meloni S, Moreno Y. Contact-based social contagion in multiplex networks. Physical Review E. 2013;88(5):050801. doi: 10.1103/PhysRevE.88.050801 [DOI] [PubMed] [Google Scholar]
  • 16. Saumell-Mendiola A, Serrano MÁ, Boguñá M. Epidemic spreading on interconnected networks. Physical Review E. 2012;86(2):026106. doi: 10.1103/PhysRevE.86.026106 [DOI] [PubMed] [Google Scholar]
  • 17. Menichetti G, Remondini D, Panzarasa P, Mondragón RJ, Bianconi G. Weighted Multiplex Networks. PLoS ONE. 2014;9(6):e97857. doi: 10.1371/journal.pone.0097857 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18. Szell M, Lambiotte R, Thurner S. Multirelational organization of large-scale social networks in an online world. Proceedings of the National Academy of Sciences. 2010;107(31):13636–13641. doi: 10.1073/pnas.1004008107 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19. Stella M, Beckage NM, Brede M. Multiplex lexical networks reveal patterns in early word acquisition in children. Scientific Reports. 2017;7(1):46730. doi: 10.1038/srep46730 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Gómez-Gardeñes J, Reinares I, Arenas A, Floría LM. Evolution of Cooperation in Multiplex Networks. Scientific Reports. 2012;2(1):620. doi: 10.1038/srep00620 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21. Wang Z, Szolnoki A, Perc M. Optimal interdependence between networks for the evolution of cooperation. Scientific Reports. 2013;3(1):2470. doi: 10.1038/srep02470 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22. Buono C, Braunstein LA. Immunization strategy for epidemic spreading on multilayer networks. EPL (Europhysics Letters). 2015;109(2):26001. doi: 10.1209/0295-5075/109/26001 [DOI] [Google Scholar]
  • 23. Zhao D, Wang L, Li S, Wang Z, Wang L, Gao B. Immunization of Epidemics in Multiplex Networks. PLoS ONE. 2014;9(11):e112018. doi: 10.1371/journal.pone.0112018 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24. Yagan O, Qian D, Zhang J, Cochran D. Conjoining Speeds up Information Diffusion in Overlaying Social-Physical Networks. IEEE Journal on Selected Areas in Communications. 2013;31(6):1038–1048. doi: 10.1109/JSAC.2013.130606 [DOI] [Google Scholar]
  • 25. Dickison M, Havlin S, Stanley HE. Epidemics on interconnected networks. Physical Review E. 2012;85(6):066109. doi: 10.1103/PhysRevE.85.066109 [DOI] [PubMed] [Google Scholar]
  • 26. Sahneh FD, Scoglio C. Competitive epidemic spreading over arbitrary multilayer networks. Physical Review E. 2014;89(6):062817. doi: 10.1103/PhysRevE.89.062817 [DOI] [PubMed] [Google Scholar]
  • 27. Marceau V, Noël PA, Hébert-Dufresne L, Allard A, Dubé LJ. Modeling the dynamical interaction between epidemics on overlay networks. Physical Review E. 2011;84(2):026105. doi: 10.1103/PhysRevE.84.026105 [DOI] [PubMed] [Google Scholar]
  • 28. Yağan O, Gligor V. Analysis of complex contagions in random multiplex networks. Physical Review E. 2012;86(3):036103. doi: 10.1103/PhysRevE.86.036103 [DOI] [PubMed] [Google Scholar]
  • 29. Sahneh FD, Scoglio C, Van Mieghem P. Generalized Epidemic Mean-Field Model for Spreading Processes Over Multilayer Complex Networks. IEEE/ACM Transactions on Networking. 2013;21(5):1609–1620. doi: 10.1109/TNET.2013.2239658 [DOI] [Google Scholar]
  • 30. Kahma N, Matschoss K. The rejection of innovations? Rethinking technology diffusion and the non-use of smart energy services in Finland. Energy Research and Social Science. 2017;34:27–36. doi: 10.1016/j.erss.2017.05.024 [DOI] [Google Scholar]
  • 31. Abrahamson E. Managerial Fads and Fashions: The Diffusion and Rejection of Innovations. Academy of Management Review. 1991;16(3):586–612. doi: 10.2307/258919 [DOI] [Google Scholar]
  • 32. Penrose M, et al. Random geometric graphs. vol. 5. Oxford University Press; 2003. [Google Scholar]
  • 33.Parés F, Gasulla DG, Vilalta A, Moreno J, Ayguadé E, Labarta J, et al. Fluid Communities: A Competitive, Scalable and Diverse Community Detection Algorithm. Springer, Cham; 2018. p. 229–240. Available from: http://link.springer.com/10.1007/978-3-319-72150-7_19.
  • 34. Erdős P, Rényi A. On the evolution of random graphs. Publ Math Inst Hung Acad Sci. 1960;5(1):17–60. [Google Scholar]
  • 35. Barabási AL. Network Science. 1st ed. Cambridge University Press; 2016. [Google Scholar]
  • 36. Michalski R, Kajdanowicz T, Bródka P, Kazienko P. Seed Selection for Spread of Influence in Social Networks: Temporal vs. Static Approach. New Generation Computing. 2014;32(3-4):213–235. doi: 10.1007/s00354-014-0402-9 [DOI] [Google Scholar]
  • 37.Bender-deMoll S, Morris M, Wang L, van de Bunt G, Bossaert G, Meidert N, et al. networkDynamicData: Dynamic (Longitudinal) Network Datasets; 2016. Available from: https://cran.r-project.org/web/packages/networkDynamicData/.
  • 38. Naseri MB, Elliott G. Role of demographics, social connectedness and prior internet experience in adoption of online shopping: Applications for direct marketing. Journal of Targeting, Measurement and Analysis for Marketing. 2011;19(2):69–84. doi: 10.1057/jt.2011.9 [DOI] [Google Scholar]
  • 39. Rogers EM. Diffusion of innovations. Simon and Schuster; 2010. [Google Scholar]
  • 40.Erlandsson F, Bródka P, Borg A. Seed selection for information cascade in multilayer networks. In: International Conference on Complex Networks and their Applications. Springer; 2017. p. 426–436.
  • 41. Sabidussi G. The centrality index of a graph. Psychometrika. 1966;31(4):581–603. doi: 10.1007/BF02289527 [DOI] [PubMed] [Google Scholar]
  • 42. Zhang JX, Chen DB, Dong Q, Zhao ZD. Identifying a set of influential spreaders in complex networks. Scientific reports. 2016;6:27823. doi: 10.1038/srep27823 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43. Hébert-Dufresne L, Grochow JA, Allard A. Multi-scale structure and topological anomaly detection via a new network statistic: The onion decomposition. Scientific reports. 2016;6:31708. doi: 10.1038/srep31708 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 44. He JL, Fu Y, Chen DB. A novel top-k strategy for influence maximization in complex networks with community structure. PloS one. 2015;10(12):e0145283. doi: 10.1371/journal.pone.0145283 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 45. Stasser G, Titus W. Pooling of unshared information in group decision making: Biased information sampling during discussion. Journal of personality and social psychology. 1985;48(6):1467. doi: 10.1037/0022-3514.48.6.1467 [DOI] [Google Scholar]
  • 46. Kao AB, Couzin ID. Modular structure within groups causes information loss but can improve decision accuracy. Philosophical Transactions of the Royal Society B: Biological Sciences. 2019;374(1774):20180378. doi: 10.1098/rstb.2018.0378 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47. Michalski R, Szymanski BK, Kazienko P, Lebiere C, Lizardo O, Kulisiewicz M. Social networks through the prism of cognition. Complexity. 2018;2021. [Google Scholar]
  • 48.Hagberg AA, Schult DA, Swart PJ. Exploring Network Structure, Dynamics, and Function using NetworkX. In: Varoquaux G, Vaught T, Millman J, editors. Proceedings of the 7th Python in Science Conference. Pasadena, CA USA; 2008. p. 11–15.

Decision Letter 0

Irene Sendiña-Nadal

25 Jun 2020

PONE-D-20-06635

Hierarchical effects facilitate spreading processes on synthetic and empirical multi-layer networks

PLOS ONE

Dear Dr. Doyle,

First of all, we would like to thank you and your coauthors for submitting your manuscript to PLOS ONE and for the patience during the review process. We apologise for the huge delay we incurred in taking a decision, mainly caused by the current pandemic situation and that one of the two secured reviewers unfortunately had to drop out from the process without returning a report.

From a critical reading of the comments from the Reviewer #1, we conclude that your work should represent an interesting addition to the current literature devoted to spreading processes in networks. At the same time, according to the referee's comments, there are serious concerns about how the research has been performed. In particular, the referee points out problems with definitions and description of the model, and several issues about the different conducted experiments making difficult to support the  conclusions drawn in the manuscript.

On this basis, we regret that we cannot make you an offer of publication. However, we would be willing to consider a rebuttal and a revised version. At the same time, we imagine that carrying out some of the revisions may require a significant amount of additional work on your part.

Should you consider you can overcome all the referee's criticisms, and you wish your manuscript to be reconsidered in PLOS ONE, please respond point-by-point to all of the referee's comments and revise your manuscript as appropriate.

Please submit your revised manuscript by Aug 09 2020 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Irene Sendiña-Nadal

Academic Editor

PLOS ONE

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2.Thank you for clarifying how the empirical networks data was accessed. Please add the following text to your Methods: Empirical Networks section: 'Access to the data was overseen by the Sandia National Laboratories data governance committee, and all data was fully anonymized before being made available to the authors.

3.Thank you for stating the following in the Financial Disclosure section:

[ This study was funded by Sandia National Laboratories, a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

The Sandia National Laboratories website is https://www.sandia.gov/

The funders helped procure the data for this work.]

We note that you received funding from a commercial source: [National Technology & Engineering Solutions of Sandia, LLC]

Please provide an amended Competing Interests Statement that explicitly states this commercial funder, along with any other relevant declarations relating to employment, consultancy, patents, products in development, marketed products, etc.

Within this Competing Interests Statement, please confirm that this does not alter your adherence to all PLOS ONE policies on sharing data and materials by including the following statement: "This does not alter our adherence to PLOS ONE policies on sharing data and materials.” (as detailed online in our guide for authors http://journals.plos.org/plosone/s/competing-interests).  If there are restrictions on sharing of data and/or materials, please state these. Please note that we cannot proceed with consideration of your article until this information has been declared.

Please include your amended Competing Interests Statement within your cover letter. We will change the online submission form on your behalf.

Please know it is PLOS ONE policy for corresponding authors to declare, on behalf of all authors, all potential competing interests for the purposes of transparency. PLOS defines a competing interest as anything that interferes with, or could reasonably be perceived as interfering with, the full and objective presentation, peer review, editorial decision-making, or publication of research or non-research articles submitted to one of the journals. Competing interests can be financial or non-financial, professional, or personal. Competing interests can arise in relationship to an organization or another person. Please follow this link to our website for more details on competing interests: http://journals.plos.org/plosone/s/competing-interests

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: No

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: This paper presentments quite exciting topic which is very important in nowadays network science. However, there are still some issues to address before the paper can be published.

Major issues

1. It seems that through the paper authors use information, innovation and influence spread as synonyms when, in fact, they are three different sociological phenomena. Thus, please clearly state what is being modeled and evaluate; spread of information or spread of innovation.

2. Having 1, please elaborate on how the selected model (SIR) works in that scenario and how real processes can be translated to mechanisms of the model. For example, if we have spread of information we would have S – do not have information, I – informed, R – forget the information (then maybe it will be better to consider SIS). Innovation case -> S – not adopted, I – adopted, R – forgot/rejected the innovation -> but why one cannot adopt it again? Moreover, if we can reject the innovation why we cannot go straight from I to R based on many neighbouring nodes which already rejected the innovation? Please fully justify the model and the reasoning behind each element of the model.

3. Having 1 and 2, please clearly justify selected parameters for example, why a network is clustered into 60 clusters (is it always 60 or depends on the network size?, why 60?)? Why the probability of transition to R is 0.2, why not 0.1 or 0.5, what will be the effect on the process depending on selected probability? Why 370hours of collaboration and not 100 or 500? etc.

4. Selected networks are all of the same size 1000-1800 nodes which do not allow for results generalization. Please use both smaller and bigger networks to address both SMEs and large corporations at least for simulated data. For real networks, please use other “company/institution” datasets like Manufacturing emails (Radoslaw Michalski, Sebastian Palus, and Przemyslaw Kazienko. Matching organizational structure and social network extracted from email communication. In Lecture Notes in Business Information Processing, volume 87, pages 197--206. Springer Berlin Heidelberg, 2011.), Enron emails and Enron structure (Palus, S., Brodka, P., & Kazienko, P. (2011). Evaluation of organization structure based on email interactions. International Journal of Knowledge Society Research (IJKSR), 2(1), 1-13.) and others.

5. Selected approach for seed selection does not allow for (1) easy comparison of results between networks of various sizes and (2) results reproducibility. For (1), please consider using a percentage of a network as seeds (e.g. 1% or 0.5% of nodes will be seeds) instead of a fixed number of seeds. For (2), please consider using some seed selection strategy instead of random selection, e.g. top % of nodes with the highest degree. There is many seed selection strategies for multilayer and single layer networks (Erlandsson, F., Bródka, P., & Borg, A. (2017, November). Seed selection for information cascade in multilayer networks. In International Conference on Complex Networks and their Applications (pp. 426-436). Springer, Cham.). The most useful in case of the problem presented in the paper and high cauterization of nodes might be community structure based method like (He, J.-L., Fu, Y. & Chen, D.-B. A novel top-k strategy for influence maximization in complex networks with community structure. PloS one 10, e0145283 (2015).). Please also use simple degree as a benchmark. Please consider using some early adopters mechanism to introduce the real appearance of innovation in the company, which is usually done by people with some key characteristic (leaders, influencers, innovators) rather than random people.

6. What was the dosage threshold for each node? Was it always the same or it was selected randomly in each run. If randomly each time how you compare results between two networks if we have random seeds, random thresholds and random transition to R each time? Please consider coordinated execution approach similar to one used in (Jankowski, J., Szymanski, B. K., Kazienko, P., Michalski, R., & Bródka, P. (2018). Probing limits of information spread with sequential seeding. Scientific reports, 8(1), 1-9.) where you generate for example 10 000 instances of nodes threshold and R transitions plus add the seeds selected according to some heuristic/strategy. Then we can compare the results between networks for each instance and see what affect the network topology and/or seed selection strategy have on the spreading process.

7. Please evaluate if results are statistically significant

Minor issues

8. What is the difference between Dosage SI model and Linear threshold model –on the first glance, it looks the same. If they are the same, please consider noting that in the manuscript.

9. Please unify the naming convention in the paper, e.g. sometimes it is multilayered, sometimes multi-layered

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Jun 9;16(6):e0252266. doi: 10.1371/journal.pone.0252266.r002

Author response to Decision Letter 0


22 Dec 2020

In depth responses to each raised point by the reviewer and editor is included in the Response to Reviewers letter.

Editor:

1. We have updated the the file naming convention as well as the referencing inside the manuscript to conform with requirements.

2. The requested statement was added to the manuscript.

3. The cover letter has been updated to comply with the request.

Reviewer:

1. A full explanation has been added to the response letter, as well as updates throughout the manuscript to clarify the point.

2. This too has been included in the manuscript and the response letter to clarify and focus the paper.

3. Justification for parameter choices have been added to both the response and the manuscript.

4. We have run new simulations and conducted new analysis to comply with this request. This includes a new figure in the main body of the manuscript as well as the new S1 Appendix file that considers a new empirical dataset.

5&6. The requested analysis has been completed to confirm the reproducibility of the results, leading to a new section in the manuscript.

7. Explanation of the statistical significance of the Monte Carlo simulations is included in the response letter.

8. A clarification on the differences between the models is included in the response letter.

9. The manuscript has been cleared of these inconsistencies.

Attachment

Submitted filename: Response to Reviewers.pdf

Decision Letter 1

Irene Sendiña-Nadal

19 Jan 2021

PONE-D-20-06635R1

Hierarchical effects facilitate spreading processes on synthetic and empirical multi-layer networks

PLOS ONE

Dear Dr. Doyle,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please submit your revised manuscript by Mar 05 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols

We look forward to receiving your revised manuscript.

Kind regards,

Irene Sendiña-Nadal

Academic Editor

PLOS ONE

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: N/A

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: No

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The paper has been significantly improved, addressing most of the issues.

I am satisfied with the replay and changes made regarding comment 1, 4, 5, 6, 8 and 9. However, there are still some issues related to comment 2 and 3 in the manuscript

2. The model description is still not detailed enough with regards to motivation and reasons behind using SIR to spread innovations e.g.

• Can the innovation be ever accepted or at the end, it will always be rejected by the population? How this relates to real-world cases? Maybe fig 1 could extend (by adding 1b) by adding a theoretical S I R states dynamics – something like this https://en.wikipedia.org/wiki/Compartmental_models_in_epidemiology#/media/File:Graph_SIR_model_without_vital_dynamics.svg or this https://en.wikipedia.org/wiki/Compartmental_models_in_epidemiology#/media/File:SIR_trajectory.png and discuss this, also extend fig 6 could be extended in the same way, by adding the state dynamics from simulations

• According to line 132-133, “there is no state transition directly from I to R under the assumption of good faith on the part of the agents”. Should not it be from S to R since in line 91-93 we have “Conversely, if they are in state I and Dti < di, they have a probability r = 1=T, or r = 0:2, of entering the removed state (R), signifying that they have abandoned the new innovation due to perceived lack of support.”?

3a. Since the c=.06N, please provide the number of partitions in each simulation case. What is the distribution of partitions sizes? In line 150, please change Nstaff to N or introduce what Nstaff means.

3b. “Then, each community is given a `manager' node that is placed on a second layer in the graph and attached only to the downstream nodes that are within its assigned community.” How is it done? Randomly? How does it look in a real network? Does the “more important manager” (e.g. with a higher degree or some other user importance measure in manager layer) manage bigger groups?

3c Since some parameters are linked, e.g. removal rate and memory window I would like to know if other combinations of parameters have been tested and what would be the memory window if removal rate would be 0.1 or 0.3? Please include this discussion in the paper.

Additionally, since many recent papers (e.g. Social Networks through the Prism of Cognition, Complexity, vol. 2021, Article ID 4963903) indicates that people tend to forget, I would like to know if you have considered adding forgetting functions to your model, i.e. that older dosages have a weaker effect on the person?

Minor new comments

10 Please add a legend to fig 2 or add colours to the caption

11 Please unify the Y-ax on figures 3a and 3b (scale); 6a with 6b and 6c (formating);

12 Please make all data and code needed for reproduction available, including all synthetic networks generated for simulations which are currently unavailable. You can use CodeOcean or something similar to make your experimental environment capsule.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Jun 9;16(6):e0252266. doi: 10.1371/journal.pone.0252266.r004

Author response to Decision Letter 1


5 Mar 2021

Reviewer comments:

2. We have thoroughly discussed the theoretical aspects of this system both in the response to reviewers letter and have added a summary of this response into the paper. This includes the real-world analogue of our system, the long time behavior, and the timeseries state curves requested. Additionally, we have fixed the critical typo pointed out by the reviewer.

3. We have changed and clarified the description of the synthetic network build process as well as provided sample code in order to make this more accessible and reproducible for readers. We have also included an in depth discussion of the community size distribution produced by our method, including a fit for the PDF. Finally, we have furthered the theoretical discussion of the effect of different parameter values and combinations, highlighting prior work in this area that considers this on an analytical level for general values of the parameters of interest, and have discussed how these parameters relate to the phenomenon of forgetting in social systems.

10. This figure has been updated with a legend.

11. These figures have been reproduced to be more stylistically consistent.

12. We have included further discussion on the creation process of these structures as well as added S2 Sample Code, a python script that produces the synthetic network structures used in the paper.

Attachment

Submitted filename: Response to Reviewers.pdf

Decision Letter 2

Irene Sendiña-Nadal

6 Apr 2021

PONE-D-20-06635R2

Hierarchical effects facilitate spreading processes on synthetic and empirical multi-layer networks

PLOS ONE

Dear Dr. Doyle,

Thank you for submitting your manuscript to PLOS ONE. According to the referee's suggestion, it is convenient to add the material produced during the second round of revision into the supplementary information as it could better help readers to follow the work. Therefore, we invite you to submit a revised version of the supplementary information and the manuscript where needed to make appropriate reference to the supplemental material. 

Please submit your revised manuscript by May 21 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Irene Sendiña-Nadal

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: N/A

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The paper has been further improved and in my opinion is ready for publication; however, I would like the authors to include the materials from their round 2 replay (those not included in the main paper) as a supplementary material (they can extend S1 or add a new supplement), since I think some of them might help the reader to faster understand some elements, for example one look at fig 1 and 2 from the replay explains a lot.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Jun 9;16(6):e0252266. doi: 10.1371/journal.pone.0252266.r006

Author response to Decision Letter 2


10 May 2021

The requested material from the reviewer response has been added to the supplementary information as an extension to the S1 Appendix, and both the text explanations and figures referenced have been included. We thank the reviewer for their time and patience with this submission.

Attachment

Submitted filename: Response to Reviewer.pdf

Decision Letter 3

Irene Sendiña-Nadal

14 May 2021

Hierarchical effects facilitate spreading processes on synthetic and empirical multi-layer networks

PONE-D-20-06635R3

Dear Dr. Doyle,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Irene Sendiña-Nadal

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Irene Sendiña-Nadal

27 May 2021

PONE-D-20-06635R3

Hierarchical effects facilitate spreading processes on synthetic and empirical multilayer networks

Dear Dr. Doyle:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Irene Sendiña-Nadal

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Appendix. Background plots, elaborations, and Polish manufacturing data.

    Analysis of the hierarchical spreading model on a Polish Manufacturing network as a secondary empirical source to supplement the presented SNL data.

    (ZIP)

    S1 Sample code. Synthetic network creation python script.

    Sample code for generating the hierarchical synthetic networks used in this paper. The code is written in Python and uses the NetworkX package for the creation of established network structures and community detection implementation [48].

    (ZIP)

    S1 Fig

    (TIF)

    S2 Fig

    (TIF)

    S3 Fig

    (TIF)

    S4 Fig

    (TIF)

    S5 Fig

    (TIF)

    S1 File. SNL node list.

    This file contains a list of node ID’s and network levels for all nodes used in the Line-Org and Project networks.

    (CSV)

    S2 File. SNL Line-Org edge list.

    This file contains a list of all edges between the nodes (contained in S1 File) for the Line-Org network.

    (CSV)

    S3 File. SNL Project edge list.

    This file contains a list of all edges between the nodes (contained in S2 File) for the Project network.

    (CSV)

    S4 File. Polish Manufacturing node list.

    This file contains a list of node ID’s and network levels for all nodes used in the Line-Org and Project networks.

    (CSV)

    S5 File. Polish Manufacturing Line-Org edge list.

    This file contains a list of all edges between the nodes (contained in S5 File) for the Line-Org network.

    (CSV)

    S6 File. Polish Manufacturing emails.

    This file contains a list of all edges between the nodes and the number of emails (contained in S5 File) for the Email network.

    (CSV)

    Attachment

    Submitted filename: Response to Reviewers.pdf

    Attachment

    Submitted filename: Response to Reviewers.pdf

    Attachment

    Submitted filename: Response to Reviewer.pdf

    Data Availability Statement

    All relevant data are within the paper and its Supporting information files.


    Articles from PLoS ONE are provided here courtesy of PLOS

    RESOURCES