Abstract
The mitochondrial genome (mitogenome) of the Tripetaloceroides tonkinensis (Orthoptera: Tetrigoidea) was sequenced and annotated. The complete mitogenome has a length of 16,696 bp and consists of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and a A + T-rich region. Thirteen PCGs started with typical ATN codon and ended with complete stop codons (five with TAG, eight with TAA). The overall nucleotide composition was 42.7% of A, 10.34% of G, 25.87% of T, and 21.08% of C. The phylogenetic trees in the current study confirmed that T. tonkinensis was clustered with other Tetrigoidea species, and the study would improve our understanding for the mitogenomes of Tetrigoidea.
Keywords: Tetrigidae, Tripetalocerinae, Tripetaloceroides tonkinensis, mitogenome, phylogenetic analysis
Tripetaloceroides tonkinensis (Günther 1938), belongs to the genus Tripetaloceroides Storozhenko, within the subfamily Tripetalocerinae of Orthoptera. This subfamily currently includes four known genera worldwide, which are mainly distributed in Southeast Asia (Storozhenko 2013), and there are one known genus and species in China (Deng 2016). However, up to now, no mitochondrial sequence has been reported for Tripetalocerinae (NCBI, last visited on April 2021). To further advance evolutionary studies for Tripetalocerinae, we sequenced and analyzed the mitochondrial genome of Tripetaloceroides tonkinensis (GenBank accession no. MW770353), which will help to better understand the phylogenetic status of this species in Tetrigoidea.
Total genomic DNA was extracted from legs of adult specimen of T. tonkinensis using the DNeasy Blood & Tissue Kit (Qiagen, Dusseldorf, Germany) according to the manufacturer’s instructions. The samples of T. tonkinensis were collected from Nonggang Nature Reserve in Guangxi province of China (22.474261°N, 106.957389°E) in May 2020 and voucher specimen is deposited in Entomological Museum of Hechi University, Yizhou, China (EMHU) (the voucher no. ii6). The genomic DNA was sequenced using the illumina Novaseq platform (Personalbio, Shanghai, China). The mitogenome was assembled using Geneious 10.2.3 (Kearse et al. 2012), and all genes were annotated with MITOS Web Server (Bernt et al. 2013).
The size of the mitogenome sequence obtained from T. tonkinensis was 16,696 bp. The gene composition, order, and orientation of T. tonkinensis was the same as the mitogenomes of other tetrigid species, and each sequence included 13 protein-coding genes(PCGs), 2 ribosomal RNA genes (rrnL and rrnS), 22 transfer RNA genes (tRNAs), and a A + T-rich region. The composition of the genome contained 42.7% A, 10.34% G, 25.87% T, and 21.08% C, showing an obvious A + T bias (68.57%). Nine PCGs and 14 tRNAs were transcribed from the majority strand, while the remaining four PCGs (ND1, ND4, ND4L, and ND5), eight tRNAs, and two rRNAs were located on the minority strand. Thirteen PCGs started with typical ATN codon (one with ATC, three with ATA, four with ATT, and five with ATG) and ended with complete stop codons (five with TAG and eight with TAA), which were presumably completed as TAA by post transcriptional polyadenylation (Anderson et al. 1981). A total of 22 tRNAs were found interspersed in the mitogenomes of T. tonkinensis, which ranged in size from 62 bp (trnD and trnF) to 69 bp (trnQ and trnM). The two ribosomal RNA genes (rrnL and rrnS) occurred in T. tonkinensis mitogenomes between trnL1 and the A + T-rich region, separated by trnV gene. The lengths of rrnS and rrnL determined in T. tonkinensis were 737 bp and 1230 bp, respectively.
The phylogenetic relationships of T. tonkinensis were reconstructed using Bayesian Inference (BI) by MrBayes 3.2.6 (Ronquist et al. 2012), i.e. the BI tree was produced (Figure 1) based on 13 PCGs (10,911 bp) from mitogenomes of 15 tetrigid species and one outgroup (Myrmecophilus manni), respectively. As shown in Figure 1, Tetrigoidea was retrieved as monophyletic with strong support (posterior probability, PP = 1). T. tonkinensis split off earliest from the other taxa, was positioned as a sister group to the remaining Tetrigoidea (PP = 1), suggesting that it is the earliest species within Tetrigoidea.
Figure 1.
Phylogenetic tree obtained from BI analysis based on 13 concatenated mitochondrial PCGs. Values at nodes indicate BI posterior probabilities (PP).
Funding Statement
This work was supported by the National Natural Science Foundation of China [31900351, 31960111], Guangxi Natural Science Foundation [2020GXNSFBA159032], Young Teachers' Basic Ability Improvement Program of Guangxi Colleges and Universities [2019KY0641], High-level Scientific Research Program for the Talent of Hechi University [2019GCC009] and High level Innovation Team and Outstanding Scholars Program of Guangxi Colleges and Universities.
Disclosure statement
No potential conflict of interest was reported by the authors.
Data availability statement
The data that support the findings of this study are openly available in National Center for Biotechnology Information at https://www.ncbi.nlm.nih.gov/nuccore, Reference no. MW770353.
References
- Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature. 290(5806):457–465. [DOI] [PubMed] [Google Scholar]
- Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF.. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319. [DOI] [PubMed] [Google Scholar]
- Deng WA. 2016. Taxonomic study of Tetrigoidea from China [Ph.D. dissertation]. Wuhan: Huazhong Agricultural University. [Google Scholar]
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP.. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Storozhenko SY. 2013. Review of the subfamily Tripetalocerinae Bolívar, 1887 (Orthoptera: Tetrigidae). Zootaxa. 3718(2):158–170. [DOI] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
The data that support the findings of this study are openly available in National Center for Biotechnology Information at https://www.ncbi.nlm.nih.gov/nuccore, Reference no. MW770353.