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Virologica Sinica logoLink to Virologica Sinica
. 2012 Apr 11;27(2):109–119. doi: 10.1007/s12250-012-3230-4

Suppression of RNA interference pathway in vitro by Grass carp reovirus

Shuai Guo 1, Dan Xu 1, Hong-xu Xu 2, Tu Wang 1, Jia-le Li 1, Li-qun Lu 1,
PMCID: PMC8218150  PMID: 22492002

Abstract

The means of survival of genomic dsRNA of reoviruses from dsRNA-triggered and Dicer-initiated RNAi pathway remains to be defined. The present study aimed to investigate the effect of Grass carp reovirus (GCRV) replication on the RNAi pathway of grass carp kidney cells (CIK). The dsRNA-triggered RNAi pathway was demonstrated unimpaired in CIK cells through RNAi assay. GCRV-specific siRNA was generated in CIK cells transfected with purified GCRV genomic dsRNA in Northern blot analysis; while in GCRV-infected CIK cells, no GCRV-specific siRNA could be detected. Infection and transfection experiments further indicated that replication of GCRV correlated with the increased transcription level of the Dicer gene and functional inhibition of in vitro synthesized egfp-siRNA in silencing the EGFP reporter gene. These data demonstrated that although only the genomic dsRNA of GCRV was sensitive to the cellular RNAi pathway, unidentified RNAi suppressor protein(s) might contribute to the survival of the viral genome and efficient viral replication.

Key words: Grass carp reovirus (GCRV), RNA interference (RNAi), Dicer, Northern blot

Footnotes

Foundation items: The Shanghai committee of Science and Technology (Grant No.10PJ1404800) and the National Natural Science Foundation of China (Grant No. 31072244).

These authors contributed equally to this work.

References

  • 1.Aliyari R., Ding S. W. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunol Rev. 2009;227(1):176–188. doi: 10.1111/j.1600-065X.2008.00722.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Attoui H., Fang Q., Jaafar F. M., et al. Common evolutionary origin of aquareoviruses and orthoreoviruses revealed by genome characterization of Golden shiner reovirus, Grass carp reovirus, Striped bass reovirus and golden ide reovirus (genus Aquareovirus, family Reoviridae) J Gen Virol. 2002;83:1941–1951. doi: 10.1099/0022-1317-83-8-1941. [DOI] [PubMed] [Google Scholar]
  • 3.Bagasra O., Prilliman K. R. RNA interference: the molecular immune system. J Mol Histol. 2004;35:545–553. doi: 10.1007/s10735-004-2192-8. [DOI] [PubMed] [Google Scholar]
  • 4.Begemann G. MicroRNAs and RNA interference in zebrafish development. Zebrafish. 2008;5(2):111–119. doi: 10.1089/zeb.2008.0528. [DOI] [PubMed] [Google Scholar]
  • 5.Blevins T., Rajeswaran R., Shivaprasad P.V., et al. Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 2006;34:6233–6246. doi: 10.1093/nar/gkl886. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Cao M., Ren H., Pan X., et al. Inhibition of EGFP expression by siRNA in EGFP-stably expressing Huh-7 cells. J Virol Methods. 2004;119:189–194. doi: 10.1016/j.jviromet.2004.03.005. [DOI] [PubMed] [Google Scholar]
  • 7.Chang J., Provost P., Taylor J. M. Resistance of human hepatitis delta virus RNAs to dicer activity. J Virol. 2003;77(22):11910–11917. doi: 10.1128/JVI.77.22.11910-11917.2003. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Csorba T., Burgyán J. Gel mobility shift assays for RNA binding viral RNAi suppressors. Methods Mol Biol. 2011;721:245–252. doi: 10.1007/978-1-61779-037-9_15. [DOI] [PubMed] [Google Scholar]
  • 9.Dlakic M. DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold. Bioinformatics. 2006;22:2711–2714. doi: 10.1093/bioinformatics/btl468. [DOI] [PubMed] [Google Scholar]
  • 10.Francki R. I. B., Fauquet C. M., Knudson D. L., et al. Classification and Nomenclature of Viruses: Fifth Report of the International Committee on Taxonomy of Viruses. New York: Springer-Verlag; 1991. p. 2. [Google Scholar]
  • 11.Galiana-Arnoux D., Dostert C., Schneemann A., et al. Essential function in vivo for Dicer-2 in host defense against RNA viruses in dro-sophila. Nat Immunol. 2006;7:590–597. doi: 10.1038/ni1335. [DOI] [PubMed] [Google Scholar]
  • 12.Giraldez A. J., Giraldez R. M., Cinalli M. E., et al. MicroRNAs regulate brain morphogenesis in zebrafish. Science. 2005;308:833–838. doi: 10.1126/science.1109020. [DOI] [PubMed] [Google Scholar]
  • 13.Hammond S. M. Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett. 2005;579:5822–5829. doi: 10.1016/j.febslet.2005.08.079. [DOI] [PubMed] [Google Scholar]
  • 14.He Y., Xu H., Yang Q., et al. The use of an in vitro microneutralization assay to evaluate the potential of recombinant VP5 protein as an antigen for vaccinating against Grass carp reovirus. Virol J. 2011;8:132. doi: 10.1186/1743-422X-8-132. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Ibrahim F., Rohr J., Jeong W., et al. Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts. Science. 2006;314:1893. doi: 10.1126/science.1135268. [DOI] [PubMed] [Google Scholar]
  • 16.Jacobs B. L., Langland J. O. When two strands are better than one: the mediators and modulators of the cellular responses to double-stranded RNA. Virology. 1996;219(2):339–349. doi: 10.1006/viro.1996.0259. [DOI] [PubMed] [Google Scholar]
  • 17.Ji W. T., Chulu J. L., Lin F. L., et al. Suppression of protein expression of three avian reovirus S-class genome segments by RNA interference. Vet Microbiol. 2008;129(3–4):252–261. doi: 10.1016/j.vetmic.2007.11.025. [DOI] [PubMed] [Google Scholar]
  • 18.Kobayashi T., Chappell J. D., Danthi P., et al. Gene-specific inhibition of reovirus replication by RNA interference. J Virol. 2006;80(18):9053–9063. doi: 10.1128/JVI.00276-06. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Kobayashi T., Ooms L. S., Chappell J. D., et al. Identification of functional domains in reovirus replication proteins muNS and mu2. J Virol. 2009;83(7):2892–906. doi: 10.1128/JVI.01495-08. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Li B., Fan Y. D., Li Y. Q., et al. Highly efficient inhibition on replication of grass carp reovirus mediated by chemically synthesized small interfering RNAs. Chin J Virol. 2009;25(5):388–394. [PubMed] [Google Scholar]
  • 21.Liao S., Chen Y., Du F., et al. Resistance of siGCRV transgenic rare minnow (Gobiocypris Rarus) to grass carp reovirus. Acta Hydrobiol Sin. 2010;34(4):837–842. doi: 10.3724/SP.J.1035.2010.00837. [DOI] [Google Scholar]
  • 22.Lu L., Ho Y., Kwang J. Suppression of porcine arterivirus replication by baculovirus-delivered shRNA targeting nucleoprotein. Biochem Biophys Res Commun. 2006;340(4):1178–1183. doi: 10.1016/j.bbrc.2005.12.133. [DOI] [PubMed] [Google Scholar]
  • 23.Ma J., Wang W., Zeng L., et al. Inhibition of the replication of grass carp reovirus in CIK cells with plasmid-transcribed shRNAs. J Virol Methods. 2011;175(2):182–187. doi: 10.1016/j.jviromet.2011.05.008. [DOI] [PubMed] [Google Scholar]
  • 24.Matsumoto G., Kushibiki T., Kinoshita Y., et al. Cationized gelatin delivery of a plasmid DNA expressing small interference RNA for VEGF inhibits murine squamous cell carcinoma. Cancer Sci. 2006;97:313–321. doi: 10.1111/j.1349-7006.2006.00174.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Moissiard G., Voinnet O. Viral suppression of RNA silencing in plants. Mol Plant Pathol. 2004;5(1):71–82. doi: 10.1111/j.1364-3703.2004.00207.x. [DOI] [PubMed] [Google Scholar]
  • 26.Moissiard G., Voinnet O. RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc Natl Acad Sci USA. 2006;103:19593–19598. doi: 10.1073/pnas.0604627103. [DOI] [PMC free article] [PubMed] [Google Scholar] [Retracted]
  • 27.Parker G. S., Eckert D. M., Bass B. L. RDE-4 preferentially binds long dsRNA and its dimerization is necessary for cleavage of dsRNA to siRNA. RNA. 2006;12:807–818. doi: 10.1261/rna.2338706. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Patrick J., Paddison P. J., Caudy A. A., et al. Stable suppression of gene expression by RNAi in mammalian cells. Proc Natl Acad Sci U S A. 2002;99(3):1443–1448. doi: 10.1073/pnas.032652399. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Qiu T., Lu R., Zhang J., et al. Complete nucleotide sequence of the S10 genome segment of grass carp reovirus (GCRV) Dis Aquat Org. 2001;44:69–74. doi: 10.3354/dao044069. [DOI] [PubMed] [Google Scholar]
  • 30.Qu S., Zhang X., Zheng C., et al. Apoptosis of the cell line from grass carp (CIK) induced by fish reovirus. Acta Hydrobiol Sin. 2000;24(6):616–620. [Google Scholar]
  • 31.Su J., Zhu Z., Wang Y. Molecular cloning, characterization and expression analysis of the PKZ gene in rare minnow Gobiocypris rarus. Fish Shellfish Immunol. 2008;25:106–113. doi: 10.1016/j.fsi.2008.03.006. [DOI] [PubMed] [Google Scholar]
  • 32.Takeda A., Tsukuda M., Mizumoto H., et al. A plant RNA virus suppresses RNA silencing through viral RNA replication. EMBO J. 2005;24(17):3147–3157. doi: 10.1038/sj.emboj.7600776. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33.Tuschl T., Zamore P. D., Lehmann R., et al. Targeted mRNA degradation by double-stranded RNA in vitro. Genes Dev. 1999;13:3191–3197. doi: 10.1101/gad.13.24.3191. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34.Wang L., Zhou J. Y., Yao J. H., et al. U6 promoter-driven siRNA injection has nonspecific effects in zebrafish. Biochem. Biophys._Res Commun. 2010;391(3):1363–1368. doi: 10.1016/j.bbrc.2009.12.065. [DOI] [PubMed] [Google Scholar]
  • 35.Wang T., Liu P., Chen H. Preliminary study on the susceptibility of Gobiocypris rarus to hemorrhagic virus of grass carp (GCHV) Acta Hydrobiol Sin. 1994;18:144–149. [Google Scholar]
  • 36.Wang X. H., Aliyari R., Li W. X., et al. RNA interference directs innate immunity against viruses in adult Drosophila. Science. 2006;312:452–454. doi: 10.1126/science.1125694. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37.Weber F., Wagner V., Rasmussen S. B., et al. Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses. J Virol. 2006;8010:5059–5064. doi: 10.1128/JVI.80.10.5059-5064.2006. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Zhang C., Wang Q., Shi C., et al. Molecular analysis of grass carp reovirus HZ08 genome segments 1–3 and 5–6. Virus Genes. 2010;41(1):102–104. doi: 10.1007/s11262-010-0489-0. [DOI] [PubMed] [Google Scholar]

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