Table 3.
Comparison of MDCAN-Lys with existing predictors using the independent test set (the data are percentages). DeepSuccinylSite a and DeepSuccinylSite b represent DeepSuccinylSite with one-hot encoding and embedding encoding. The highest value in each category is shown in italic.
| Method | Acc | Sn | Sp | MCC | Gmean | AUC | AUPR |
|---|---|---|---|---|---|---|---|
| iSuc-PseAAC | 82.34 | 13.29 | 89.23 | 2.32 | 34.44 | - | - |
| iSuc-PseOpt | 72.33 | 31.17 | 76.45 | 2.32 | 48.81 | - | - |
| SuccinSite | 84.20 | 58.79 | 86.74 | 34.51 | 71.41 | - | - |
| pSuc-Lys | 78.39 | 23.22 | 83.89 | 5.47 | 44.14 | - | - |
| HybridSucc | 63.00 | 39.00 | 65.40 | 2.65 | 50.50 | - | - |
| DeepSuccinylSite a | 56.96 | 68.42 | 55.79 | 14.07 | 61.78 | 66.75 | 16.77 |
| DeepSuccinylSite b | 62.63 | 65.35 | 62.35 | 16.37 | 63.83 | 68.67 | 17.48 |
| Our Method | 72.96 | 70.32 | 73.23 | 27.33 | 71.76 | 79.03 | 25.24 |