Table 5.
Status (monophyletic, paraphyletic or polyphyletic) of different groups and the minimum number of clades they form (*) in the strict consensus tree of the phylogenetic analyses of two datasets: a large dataset of 505 terminals and a smaller dataset of 315 terminals from which we removed 190 putative recombinant genomes. All datasets include four partitions (ORF1ab, M, S and N) and represent subsets of the complete dataset of 2006 terminals. SARS‐CoV‐2‐related clade indicates SARS‐CoV‐2 plus associated Chiroptera‐hosted viruses
| Dataset | Clade | Status | No. of clades (*) |
|---|---|---|---|
| 505 terminals | Deltacoronavirus | Paraphyletic | 2 |
| 315 terminals | Deltacoronavirus | Polyphyletic | 2 |
| 505 terminals | Gammacoronavirus | Monophyletic (single terminal) | 1 |
| 315 terminals | Gammacoronavirus | Monophyletic (single terminal) | 1 |
| 505 terminals | Alphacoronavirus | Polyphyletic | 5 |
| 315 terminals | Alphacoronavirus | Polyphyletic | 6 |
| 505 terminals | Betacoronavirus | Polyphyletic | 3 |
| 315 terminals | Betacoronavirus | Polyphyletic | 9 |
| 505 terminals | MERS‐related | Monophyletic | 1 |
| 315 terminals | MERS‐related | Monophyletic | 1 |
| 505 terminals | SARS‐CoV‐related | Polyphyletic | 3 |
| 315 terminals | SARS‐CoV‐related | Polyphyletic | 2 |
| 505 terminals | SARS‐CoV‐2‐related | Monophyletic | 1 |
| 315 terminals | SARS‐CoV‐2‐related | Monophyletic | 1 |