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. 2021 May 19;13(13):1031–1056. doi: 10.2217/epi-2021-0037

Table 1. . miRNAs significantly altered by maternal separation and the interaction between maternal separation and sex across prefrontal cortex, amygdala and hippocampus..

miRNAs altered by MS
        CPM fold change    
  Accession ID Chromosome location miRNA MS: control p-value Sig.
Prefrontal cortex MIMAT0017093 chr2:165605923–165606020(+) miR-15b-3p 1.58 0.014
MIMAT0003211 chrX:140117518–140117589(-) miR-20b-5p 1.46 0.045
MIMAT0000847 chr10:75050839–75050925(+) miR-142-5p 1.33 0.003 §
MIMAT0000851 chr18:56969907–56969994(-) miR-145-5p 1.47 0.022
MIMAT0000876 chr6:136704961–136705057(+) miR-203a-3p 1.31 0.029
MIMAT0001547 chrX:158153377–158153467(+) miR-450a-5p 1.34 0.005 §
MIMAT0003121 chr1:215832088–215832160(-) miR-483-3p 1.70 0.036
Amygdala MIMAT0017105 chr8:55492542–55492625(-) miR-34b-3p 1.79 0.010
MIMAT0004723 chr8:55492024–55492100(-) miR-34c-3p 2.06 0.003 §
MIMAT0000814 chr8:55492024–55492100(-) miR-34c-5p 1.83 0.015
MIMAT0017122 chr11:88129773–88129854(+) miR-130b-5p -1.35 0.039
MIMAT0035734 chr14:30331049–30331131(-) miR-193b-3p 1.56 0.007
MIMAT0000877 chr1:240403000–240403109(+) miR-204-5p 1.36 0.013
MIMAT0017286 chr17:71809047–71809128(-) miR-466b-2-3p 1.39 0.008
MIMAT0037262 chr17:72066536–72066617(-) miR-466b-4-3p 1.39 0.008
MIMAT0024852 chr11:86857633–86857705(+) miR-1306-3p -1.38 0.047
Hippocampus MIMAT0001082 chr4:82199056–82199140(-) miR-196b-5p 2.59 0.048
MIMAT0000875 chr5:173490144–173490238(-) miR-200b-3p 1.57 0.028
MIMAT0017152 chr5:173490144–173490238(-) miR-200b-5p 2.66 0.011
MIMAT0000575 experimental miR-335 -1.36 0.028
MIMAT0017221 chr6:133877124–133877205(+) miR-487b-5p -1.43 0.033
MIMAT0017211 chr6:133706202–133706285(+) miR-540-5p -1.33 0.032
MIMAT0024853 chr13:44719335–44719401(+) miR-3473 1.34 0.025
miRNAs altered by the interaction between MS and sex
        CPM fold change    
  Accession ID Chromosome location miRNA M MS: M controls F MS: F controls p-value Sig.
Prefrontal cortex MIMAT0017087 chr11:16052873–16052966(+) let-7c-1-3p -1.23 1.27 0.016
MIMAT0000785 chr2:165606072–165606166(+) miR-16-5p 1.36 -1.04 0.023
MIMAT0000800 chr11:79380523–79380608(-) miR-28-5p 1.34 1.02 0.037
MIMAT0017146 chr8:117354364–117354454(+) miR-191a-3p -1.35 1.05 0.027
MIMAT0017148 chr1:221634786–221634870(+) miR-194-3p -1.33 1.44 0.040
MIMAT0004741 chr20:3816158–3816267(-) miR-219a-1-3p -1.37 1.28 0.025
MIMAT0003122 chr6:133739916–133739994(+) miR-370-3p -1.34 1.03 0.029
MIMAT0003201 chr6:133884178–133884257(+) miR-382-5p -1.34 1.01 0.027
MIMAT0017303 chr6:133893997–133894072(+) miR-410-5p -1.72 1.05 0.015
MIMAT0017304 chr6:133858849–133858924(+) miR-411-3p -1.48 1.04 0.038
MIMAT0017307 chr6:133715378–133715458(+) miR-434-5p -1.54 -1.09 0.015
MIMAT0003383 chr10:56844977–56845045(+) miR-497-5p 1.66 -1.05 0.027
MIMAT0003177 chr6:133892655–133892744(+) miR-541-5p -1.31 1.04 0.041
MIMAT0005325 chr15:46893157–46893235(+), chr15:47057496–47057574(+) miR-598-3p -1.36 1.09 0.042
MIMAT0035731 chr13:77065446–77065507(+) miR-1843b-3p -1.23 1.12 0.010
MIMAT0035740 chr6:91645144–91645212(-) miR-3084a-3p -1.27 1.36 0.035
MIMAT0017802 chr10:14603134–14603243(-) miR-3547 1.41 -1.58 0.024
MIMAT0025070 chr6:133878578–133878700(+) miR-6331 -1.41 1.09 0.015
Amygdala MIMAT0017089 chr17:16418221–16418309(+) let-7f-1-3p -1.15 1.27 0.014
MIMAT0003126 chr9:26795649–26795732(+) miR-133b-3p 1.50 -1.29 0.030
MIMAT0035739 chr19:43403103–43403169(+) miR-3084a-1-5p 1.63 -1.39 0.002 §
MIMAT0025056 chr17:34746552–34746678(+), chr17:35477422–35477548(+) miR-6319 1.14 -1.20 0.024
Hippocampus MIMAT0000778 chr17:16418221–16418309(+), chrX:21583272–21583354(+) let-7f-5p -1.11 1.35 0.035
MIMAT0004707 chr7:66802731–66802815(+) let-7i-3p 1.17 -1.32 0.026
MIMAT0035728 experimental miR-15a-5p 1.23 -1.46 0.024
MIMAT0000785 chr2:165606072–165606166(+) miR-16-5p 1.13 -1.38 0.033
MIMAT0004717 chr1:38238376–38238456(+), chr13:113782057–113782137(+) miR-29b-5p 1.11 -1.36 0.027
MIMAT0000815 chr5:167092491–167092592(+) miR-34a-5p 1.09 -1.48 0.038
MIMAT0000828 chr15:47964298–47964382(+), chr2:102311603–102311711(+), chr3:176406205–176406291(+) miR-124-3p -1.01 -1.42 0.047
MIMAT0000865 chr8:73030047–73030131(-), chr8:80928165–80928249(+) miR-190a-5p 1.23 -1.35 0.049
MIMAT0004736 chr10:67065896–67065981(+) miR-193a-5p 1.91 1.13 0.046
MIMAT0000581 chr10:109195251–109195316(-) miR-338-3p 1.44 -1.15 0.018
MIMAT0017306 chr8:117354821–117354903(+) miR-425-3p 1.02 -1.53 0.020
MIMAT0001626 chr6:133711425–133711538(+) miR-431 -1.35 1.26 0.037
MIMAT0017192 chr6:133712334–133712426(+) miR-433-5p -1.03 -1.47 0.035
MIMAT0001633 chr10:65291204–65291275(-) miR-451-5p 1.02 2.04 0.009
MIMAT0012823 chr4:63342943–63343026(+) miR-490-3p 1.22 -1.45 0.037
MIMAT0017217 chr6:133699509–133699592(+) miR-493-5p -1.26 1.22 0.048
MIMAT0005287 chr4:21673635–21673710(-) miR-879-5p 1.36 -1.39 0.006

For the main effect of MS, CPM fold change is expressed as a ratio of MS over control animals. For the interaction, CPM fold change is expressed as a ratio of MS over control animals in males only (left column) and females only (right column). Positive fold change indicates increased expression in MS, while negative values indicate decreased expression in MS compared with controls.

p < 0.05.

p ≤ 0.01.

§

p < 0.005.

CPM: Counts per million; F: Female; M: Male; MS: Maternal separation; Sig.: Significance.