Table 1. . miRNAs significantly altered by maternal separation and the interaction between maternal separation and sex across prefrontal cortex, amygdala and hippocampus.†.
miRNAs altered by MS | |||||||
---|---|---|---|---|---|---|---|
CPM fold change | |||||||
Accession ID | Chromosome location | miRNA | MS: control | p-value | Sig. | ||
Prefrontal cortex | MIMAT0017093 | chr2:165605923–165606020(+) | miR-15b-3p | 1.58 | 0.014 | † | |
MIMAT0003211 | chrX:140117518–140117589(-) | miR-20b-5p | 1.46 | 0.045 | † | ||
MIMAT0000847 | chr10:75050839–75050925(+) | miR-142-5p | 1.33 | 0.003 | § | ||
MIMAT0000851 | chr18:56969907–56969994(-) | miR-145-5p | 1.47 | 0.022 | † | ||
MIMAT0000876 | chr6:136704961–136705057(+) | miR-203a-3p | 1.31 | 0.029 | † | ||
MIMAT0001547 | chrX:158153377–158153467(+) | miR-450a-5p | 1.34 | 0.005 | § | ||
MIMAT0003121 | chr1:215832088–215832160(-) | miR-483-3p | 1.70 | 0.036 | † | ||
Amygdala | MIMAT0017105 | chr8:55492542–55492625(-) | miR-34b-3p | 1.79 | 0.010 | ‡ | |
MIMAT0004723 | chr8:55492024–55492100(-) | miR-34c-3p | 2.06 | 0.003 | § | ||
MIMAT0000814 | chr8:55492024–55492100(-) | miR-34c-5p | 1.83 | 0.015 | † | ||
MIMAT0017122 | chr11:88129773–88129854(+) | miR-130b-5p | -1.35 | 0.039 | † | ||
MIMAT0035734 | chr14:30331049–30331131(-) | miR-193b-3p | 1.56 | 0.007 | ‡ | ||
MIMAT0000877 | chr1:240403000–240403109(+) | miR-204-5p | 1.36 | 0.013 | † | ||
MIMAT0017286 | chr17:71809047–71809128(-) | miR-466b-2-3p | 1.39 | 0.008 | ‡ | ||
MIMAT0037262 | chr17:72066536–72066617(-) | miR-466b-4-3p | 1.39 | 0.008 | ‡ | ||
MIMAT0024852 | chr11:86857633–86857705(+) | miR-1306-3p | -1.38 | 0.047 | † | ||
Hippocampus | MIMAT0001082 | chr4:82199056–82199140(-) | miR-196b-5p | 2.59 | 0.048 | † | |
MIMAT0000875 | chr5:173490144–173490238(-) | miR-200b-3p | 1.57 | 0.028 | † | ||
MIMAT0017152 | chr5:173490144–173490238(-) | miR-200b-5p | 2.66 | 0.011 | † | ||
MIMAT0000575 | experimental | miR-335 | -1.36 | 0.028 | † | ||
MIMAT0017221 | chr6:133877124–133877205(+) | miR-487b-5p | -1.43 | 0.033 | † | ||
MIMAT0017211 | chr6:133706202–133706285(+) | miR-540-5p | -1.33 | 0.032 | † | ||
MIMAT0024853 | chr13:44719335–44719401(+) | miR-3473 | 1.34 | 0.025 | † |
miRNAs altered by the interaction between MS and sex | |||||||
---|---|---|---|---|---|---|---|
CPM fold change | |||||||
Accession ID | Chromosome location | miRNA | M MS: M controls | F MS: F controls | p-value | Sig. | |
Prefrontal cortex | MIMAT0017087 | chr11:16052873–16052966(+) | let-7c-1-3p | -1.23 | 1.27 | 0.016 | † |
MIMAT0000785 | chr2:165606072–165606166(+) | miR-16-5p | 1.36 | -1.04 | 0.023 | † | |
MIMAT0000800 | chr11:79380523–79380608(-) | miR-28-5p | 1.34 | 1.02 | 0.037 | † | |
MIMAT0017146 | chr8:117354364–117354454(+) | miR-191a-3p | -1.35 | 1.05 | 0.027 | † | |
MIMAT0017148 | chr1:221634786–221634870(+) | miR-194-3p | -1.33 | 1.44 | 0.040 | † | |
MIMAT0004741 | chr20:3816158–3816267(-) | miR-219a-1-3p | -1.37 | 1.28 | 0.025 | † | |
MIMAT0003122 | chr6:133739916–133739994(+) | miR-370-3p | -1.34 | 1.03 | 0.029 | † | |
MIMAT0003201 | chr6:133884178–133884257(+) | miR-382-5p | -1.34 | 1.01 | 0.027 | † | |
MIMAT0017303 | chr6:133893997–133894072(+) | miR-410-5p | -1.72 | 1.05 | 0.015 | † | |
MIMAT0017304 | chr6:133858849–133858924(+) | miR-411-3p | -1.48 | 1.04 | 0.038 | † | |
MIMAT0017307 | chr6:133715378–133715458(+) | miR-434-5p | -1.54 | -1.09 | 0.015 | † | |
MIMAT0003383 | chr10:56844977–56845045(+) | miR-497-5p | 1.66 | -1.05 | 0.027 | † | |
MIMAT0003177 | chr6:133892655–133892744(+) | miR-541-5p | -1.31 | 1.04 | 0.041 | † | |
MIMAT0005325 | chr15:46893157–46893235(+), chr15:47057496–47057574(+) | miR-598-3p | -1.36 | 1.09 | 0.042 | † | |
MIMAT0035731 | chr13:77065446–77065507(+) | miR-1843b-3p | -1.23 | 1.12 | 0.010 | ‡ | |
MIMAT0035740 | chr6:91645144–91645212(-) | miR-3084a-3p | -1.27 | 1.36 | 0.035 | † | |
MIMAT0017802 | chr10:14603134–14603243(-) | miR-3547 | 1.41 | -1.58 | 0.024 | † | |
MIMAT0025070 | chr6:133878578–133878700(+) | miR-6331 | -1.41 | 1.09 | 0.015 | † | |
Amygdala | MIMAT0017089 | chr17:16418221–16418309(+) | let-7f-1-3p | -1.15 | 1.27 | 0.014 | † |
MIMAT0003126 | chr9:26795649–26795732(+) | miR-133b-3p | 1.50 | -1.29 | 0.030 | † | |
MIMAT0035739 | chr19:43403103–43403169(+) | miR-3084a-1-5p | 1.63 | -1.39 | 0.002 | § | |
MIMAT0025056 | chr17:34746552–34746678(+), chr17:35477422–35477548(+) | miR-6319 | 1.14 | -1.20 | 0.024 | † | |
Hippocampus | MIMAT0000778 | chr17:16418221–16418309(+), chrX:21583272–21583354(+) | let-7f-5p | -1.11 | 1.35 | 0.035 | † |
MIMAT0004707 | chr7:66802731–66802815(+) | let-7i-3p | 1.17 | -1.32 | 0.026 | † | |
MIMAT0035728 | experimental | miR-15a-5p | 1.23 | -1.46 | 0.024 | † | |
MIMAT0000785 | chr2:165606072–165606166(+) | miR-16-5p | 1.13 | -1.38 | 0.033 | † | |
MIMAT0004717 | chr1:38238376–38238456(+), chr13:113782057–113782137(+) | miR-29b-5p | 1.11 | -1.36 | 0.027 | † | |
MIMAT0000815 | chr5:167092491–167092592(+) | miR-34a-5p | 1.09 | -1.48 | 0.038 | † | |
MIMAT0000828 | chr15:47964298–47964382(+), chr2:102311603–102311711(+), chr3:176406205–176406291(+) | miR-124-3p | -1.01 | -1.42 | 0.047 | † | |
MIMAT0000865 | chr8:73030047–73030131(-), chr8:80928165–80928249(+) | miR-190a-5p | 1.23 | -1.35 | 0.049 | † | |
MIMAT0004736 | chr10:67065896–67065981(+) | miR-193a-5p | 1.91 | 1.13 | 0.046 | † | |
MIMAT0000581 | chr10:109195251–109195316(-) | miR-338-3p | 1.44 | -1.15 | 0.018 | † | |
MIMAT0017306 | chr8:117354821–117354903(+) | miR-425-3p | 1.02 | -1.53 | 0.020 | † | |
MIMAT0001626 | chr6:133711425–133711538(+) | miR-431 | -1.35 | 1.26 | 0.037 | † | |
MIMAT0017192 | chr6:133712334–133712426(+) | miR-433-5p | -1.03 | -1.47 | 0.035 | † | |
MIMAT0001633 | chr10:65291204–65291275(-) | miR-451-5p | 1.02 | 2.04 | 0.009 | ‡ | |
MIMAT0012823 | chr4:63342943–63343026(+) | miR-490-3p | 1.22 | -1.45 | 0.037 | † | |
MIMAT0017217 | chr6:133699509–133699592(+) | miR-493-5p | -1.26 | 1.22 | 0.048 | † | |
MIMAT0005287 | chr4:21673635–21673710(-) | miR-879-5p | 1.36 | -1.39 | 0.006 | ‡ |
For the main effect of MS, CPM fold change is expressed as a ratio of MS over control animals. For the interaction, CPM fold change is expressed as a ratio of MS over control animals in males only (left column) and females only (right column). Positive fold change indicates increased expression in MS, while negative values indicate decreased expression in MS compared with controls.
p < 0.05.
p ≤ 0.01.
p < 0.005.
CPM: Counts per million; F: Female; M: Male; MS: Maternal separation; Sig.: Significance.