Feasibility and utility of facemask sampling in the detection of SARS-CoV-2 during an ongoing pandemic

Abstracts

Easy access to screening for timely identification and isolation of infectious COVID-19 patients remains crucial in sustaining the international efforts to control COVID-19 spread. A major barrier limiting broad-based screening is the lack of a simple, rapid, and cost-effective COVID-19 testing method. We evaluated the feasibility and utility of facemask sampling in a cohort of 42 COVID-19-positive and 36 COVID-19-negative patients. We used a prototype of Steri-Strips™ (3 M) applied to the inner surface of looped surgical facemasks (Assure), which was worn by patients for a minimum wear time of 3 h, then removed and sent for SARS-CoV-2 PCR testing. Baseline demographics and symptomatology were also collected. Facemask sampling positivity was highest within the first 5 days of symptomatic presentation. Patients with nasopharyngeal and/or oropharyngeal swab SARS-CoV-2 PCR Ct values < 25.09 had SARS-CoV-2 detected on facemask sampling, while patients with Ct values ≥ 25.2 had no SARS-CoV-2 detected on facemask sampling. Facemask sampling can identify patients with COVID-19 during the early symptomatic phase or those with high viral loads, hence allowing timely identification and isolation of those with the highest transmission risk. Given the widespread use of facemasks, this method can potentially be easily applied to achieve broad-based, or even continuous, population screening.

Introduction

Despite the recent rollout of vaccines, easy access to screening and rapid diagnostics to facilitate early identification and timely isolation of infectious COVID-19 patients remains crucial to control COVID-19 in the ongoing pandemic. To date, nearly 200 million cases of COVID-19 have been confirmed worldwide [1], mostly by nucleic acid amplification testing for SARS-CoV-2 from respiratory samples obtained from the nasopharynx, oropharynx, sputum [2], and, more recently, saliva [3]. The current tally likely represents the tip of the iceberg, as many clinical cases are not tested routinely due to the lack of resources and infrastructural support in many countries.

Nasopharyngeal swabbing (NPS) or oropharyngeal swabbing (OPS) is currently the most commonly used method by healthcare facilities worldwide to diagnose COVID-19. Although regarded as the gold standard diagnostic method, there are significant disadvantages. It is uncomfortable and off-putting and has led to the refusal of testing [4]. Furthermore, it is dependent on trained healthcare workers and availability of personal protective equipment and isolation facilities; therefore, large-scale, well-organized systemic testing programs using NPS/OPS testing are only feasible in some countries, and even then, it is done at staggering costs to healthcare systems and the economy. As a procedure, NPS/OPS swabbing can also cause trauma including minor bleeding to patients and is thus not without risks. Breakpoint fractures of the swab stick with retained foreign bodies [5, 6] have been reported, requiring endoscopic or surgical retrieval. The procedure also exposes screening staff to the unnecessary risk of droplet exposure from gag reflexes and coughing.

SARS-CoV-2 spreads predominantly by respiratory secretions [7, 8], and SARS-CoV-2 can be detected by direct swabbing of the inner surface of facemasks worn by patients with COVID-19 [9]. In the past year, a few studies have evaluated a few methods of facemask sampling (FMS) for the diagnosis of COVID-19. One group tested a prototypic duckbilled surgical mask with specialized 3D-printed sampling strips placed horizontally on the inside of the mask, worn by patients for 30 min, and demonstrated a pick-up rate of 65–70% in those which were concomitantly NPS positive [10]. Another group used a commercially available gelatine membrane applied on the inner surface of N95 masks, worn by patients for 30 min, and additionally requested participants to perform certain purposeful vocal tasks. Using this, they demonstrated a pick-up rate of 44.8% of concomitantly NPS-positive patients [11].

In this study, we investigated the feasibility of facemask sampling (FMS) using a prototype that was based on items that were regularly available in our hospital, such as looped surgical facemasks and wound closure strips, such as Steri-Strips™ (3 M), as a method for detecting SARS-CoV-2. The yield of FMS was compared with NPS/OPS using the SARS-CoV-2 reverse transcription quantitative PCR (RT qPCR) method.

Materials and methods

Patient recruitment and facemask sampling

Patients diagnosed with COVID-19 with positive NPS/OPSs were admitted to our institution and placed in isolation within 1–2 days after confirmation of a positive SARS-CoV-2 PCR test result. They were housed individually in negative-pressure isolation rooms with airborne precautions. Patients were recruited within 72 h of their first positive NPS/OPS. As negative controls, patients who were admitted to hospital via the emergency department who presented with fever or acute respiratory infection (ARI) symptoms or fulfilled Ministry of Health, Singapore (MOH) isolation criteria [12], and who had at least two negative NPS or OPS performed 24 h apart, were also recruited. All participants were instructed to don looped surgical facemasks (Assure) with three Steri-Strips™ (3 M) stuck horizontally on the inner surface of the facemask (Fig. 1) for a minimum of 3 h of wear time. There were no restrictions on vocal maneuvers, and patients could cough, sneeze, talk, laugh, or sleep as desired. The Steri-Strips™ were then removed from the facemask by personnel dressed in full personal protective equipment (including N95 masks, face shields, hair net, yellow gown, and gloves) using sterile forceps, applied onto a sterile pipette trip with no direct handling of the strips, and deposited directly into vials containing viral transport media for stabilization and transported at room temperature with Biological Agents and Toxins Act (Transportation) Regulation approved precautions.

Fig. 1.

Schemata of the FMS process. Patients were asked to don standard looped surgical face masks (Assure) with three Steri-Strips™ (3 M) applied horizontally to the inner surface of the mask. After at least 3 h of minimum wear time, the strips were removed with sterile forceps and placed into a vial containing transport media, and then into appropriate biohazard packaging for delivery to the laboratory for testing

SARS-CoV-2 RT-PCR

SARS-CoV-2 testing for this study was carried out by two College of American Pathologists (CAP)-accredited and Ministry of Health, Singapore-licensed service laboratories (Lucence Diagnostics Pte Ltd. and Singapore General Hospital Molecular Pathology Laboratory). For Lucence Diagnostics Pte Ltd., samples were placed in a primary collection tube which contained 1 ml of proprietary transport media. Viral nucleic acid was extracted using Viral Nucleic Acid Extraction Kit II (Geneaid Biotech Ltd, Taiwan) or QIAsymphony DSP Virus/Pathogen Kit (Qiagen, Germany) according to manufacturer’s instructions. For samples tested in the Singapore General Hospital Molecular Pathology Laboratory, samples were placed in a primary collection tube which contained 1 ml of laboratory proprietary lysis reagent. Viral nucleic acid extraction and SARS-CoV-2 diagnosis were carried out using the cobas SARS-CoV-2 test (Roche) according to the manufacturer’s instructions. The SARS-CoV-2 diagnosis was carried out using the CDC 2019-nCoV real-time (RT)-PCR diagnostic panel (USA) which targets the nucleocapsid gene of the virus [13]. Samples with a reported Ct value < 40 were considered positive.

Ethics approval

Ethics (CRIB reference number: 2020/2343) and biosafety approvals were obtained for this study. All patients gave informed consent to the study.

Statistical analyses

Statistical analyses were conducted using SPSS statistics (IBM, v26.0) and GraphPad Prism software. Pearson chi-square and Fisher’s exact tests were used for categorical variable outcomes. Mann–Whitney U-test was used for nonparametric variables. Tables were made using Microsoft Excel software. Figure graphics were generated using GraphPad Prism software.

Results

Patient demographics and characteristics

Between June 24, 2020 and November 2, 2020, a total of 90 patients were screened and recruited from the isolation wards at the Singapore General Hospital. Of these, 78 agreed to participate in the study and completed the sample collection described previously (Fig. 1). Forty-two patients with SARS-CoV-2 detected via NPS/OPS and 36 control patients with at least two negative NPS/OPS were recruited. Baseline demographics, including age, ethnicity, and past medical history, were comparable between the positive and control groups (Table 1). The median duration of symptomatic illness prior to FMS was 4 days for NPS-/OPS-positive patients and 5 days for NPS-/OPS-negative patients (p = 0.276). More patients in the NPS-/OPS-positive cohort presented with a sore throat (23.8% vs 5.6%, p = 0.031, and more patients in the NPS-/OPS-negative cohort presented with fever (55.6% vs 31%, p = 0.039); otherwise, there was no significant difference in presenting symptoms. Around 35.7% of the NPS-/OPS-positive patients were asymptomatic, while 5.4% of NPS-/OPS-negative patients were asymptomatic (p = 0.002) (Table 2). All patients were hemodynamically stable at recruitment, and none required supplemental oxygen throughout hospitalization.

Table 1.

A comparison of the demographics of patients with COVID-19 and negative controls

Feature	NPS/OPS		p value
	Positive, n = 42	Negative, n = 36
Age (years), median (IQR)	47.5 (6.0)	45.0 (24.0)	0.976
Duration of illness before FMS, median (IQR)	4.0 (2.0)	5.0 (9.0)	0.276
Number of days between NPS/OPS and FMS, median (IQR)	3.0 (1.0)	1.0 (2.0)	< 0.001
Ethnicity, n (%)
Bangladeshi	23 (54.8)	11 (30.6)	0.072
Chinese	9 (21.4)	11 (30.6)
Malay	0 (0.0)	3 (8.3)
Indian	8 (19.0)	6 (16.7)
Others	2 (4.8)	5 (13.0)

Mann–Whitney U-test for continuous variables and Fisher's exact test for categorical variables

Table 2.

A comparison of the symptomology of patients with COVID-19 and negative controls

Feature	NPS/OPS, n (%)		p value
	Positive, n = 42	Negative, n = 36
Past medical history
Nil	29 (69.0)	18 (50.0)	0.17
Hypertension	5 (11.9)	7 (19.4)	0.531
Hyperlipidaemia	0 (0.0)	6 (16.7)	0.008
Diabetes mellitus	2 (4.8)	5 (13.9)	0.239
Pre-existing upper respiratory tract conditions	3 (7.1)	5 (13.9)	0.460
Pre-existing lung conditions	1 (2.4)	2 (5.6)	0.593
Cerebrovascular accident	0 (0.0)	2 (5.6)	0.210
Obesity	0 (0.0)	2 (5.6)	0.210
Thyroid conditions	0 (0.0)	2 (5.6)	0.210
Single organ transplant	1 (2.4)	0 (0.0)	1.000
Others	1 (2.4)	8 (22.2)	0.010
Asymptomatic	15 (35.7)	2 (5.4)	0.002
Symptom	27 (64.3)	34 (94.4)
Cough	15 (35.7)	9 (25.0)	0.336
Fever	13 (31.0)	20 (55.6)	0.039
Sore throat	10 (23.8)	2 (5.6)	0.031
Runny nose	7 (16.7)	2 (5.6)	0.166
Abdominal pain	2 (4.8)	2 (5.6)	1.000
Myalgia	2 (4.8)	4 (11.1)	0.406
Ansomia	3 (7.1)	0 (0.0)	0.245
Aguesia	3 (7.1)	2 (5.6)	1.000
Diarrhea	2 (4.8)	0 (0.0)	0.497
Breathlessness	3 (7.1)	6 (16.7)	0.288
Blocked nose	1 (2.4)	0 (0.0)	1.000
Chest discomfort	1 (2.4)	3 (8.3)	0.330
Nausea	0 (0.0)	1 (2.8)	0.462

Fisher’s exact test for categorical variables

Facemask sampling positivity is highest within 5 days of onset of symptoms

In the cohort of 42 NPS-/OPS-positive patients, a total of 16 FMS strips were positive by SARS-CoV-2 PCR testing (38.1%), while all 36 patients in the NPS-/OPS-negative cohort had negative FMS results. The positive predictive value and negative predictive value of FMS were 100% and 58.1% (52.2–63.7%), respectively. The overall sensitivity and specificity of FMS were 38.1% (23.6–54.4%) and 100% (90.3–100%), respectively. The overall accuracy was 66.7%.

In NPS-/OPS-positive patients, FMS positivity was significantly associated with time from onset of fever (Fisher’s exact test, p = 0.0291) (Fig. 2a) or fever and ARI (FARI) symptoms (Fisher’s exact test, p = 0.0476) (Fig. 2b). FMS was positive in 6/7 (85.7%) of patients tested within the first 5 days of presentation with fever or FARI symptoms (Fig. 2a, b). In patients who presented with ARI symptoms without fever, FMS was positive in 10/16 (62.5%) of patients tested within the first 5 days, but overall, there did not seem to be a significant association with FMS positivity and time from onset of ARI symptoms (Fig. 2b).

Fig. 2.

FMS positivity is highest within 5 days of onset of symptoms. Scatter dot plots showing days from onset of a fever, b fever and ARI (FARI), or c ARI symptoms on which FMS was performed. The black-filled circles (●) represent FMS results from individual patients. The solid line represents day 5. * indicates p < 0.05

Facemask sampling positivity correlates with lower NPS/OPS Ct values

NPS/OPS Ct values were available for 36/42 patients with COVID-19. Of these 36 patients, those who had corresponding positive FMS had significantly lower NPS/OPS Ct values. All patients with NPS/OPS Ct values < 25.09 had SARS-CoV-2 detected by FMS, while patients with NPS/OPS Ct values ≥ 25.2 did not have SARS-CoV-2 detected on FMS (Pearson’s r =  − 0.89, p < 0.0001) (Fig. 3a). Symptomatic patients were more likely to have lower NPS/OPS Ct values than asymptomatic patients (mean values 24.95 vs 34.62, p = 0.027) (Fig. 3b). The mean Ct values on FMS strips were 29.4 (20.51–35.77) for N1 and 30.19 (24.3–35.29) for N2 (data not shown). There was no correlation between FMS Ct values and NPS/OPS Ct values (data not shown).

Fig. 3.

FMS positivity correlates with lower NPS/OPS Ct values. a Scatter dot plot showing NPS/OPS swab Ct values in 36 patients with positive or negative FMS. The black-filled circles (●) represent individual patients with detectable SARS-CoV-2 by PCR on FMS. The black squares (■) represent individual patients with undetectable SARS-CoV-2 by PCR on FMS. b Scatter dot plot showing NPS/OPS swab Ct values in 36 patients who were symptomatic vs asymptomatic at presentation. The black-filled circles (●) represent individual COVID-19 patients presenting with fever and/or ARI symptoms. The black squares (■) represent individual COVID-19 patients who presented asymptomatically. *** indicates p < 0.001. **** indicates p < 0.0001

Discussion

As the COVID-19 pandemic matures towards “the new normal” with anticipated repeated waves of infection [14], a cost-effective and reproducible method for SARS-CoV-2 testing, which allows for self-collection or rapid on-site collection for group screening, is becoming crucial for sustaining worldwide efforts in maintaining testing rigor even with rapid vaccine rollouts.

In this study, our purpose was to assess the utility and feasibility of FMS using materials which were already widely available, such as wound closure strips and surgical facemasks (Table 3). Using this method, FMS had a pick-up rate of 62.6–87.5% of patients who were tested within the first 5 days of symptom onset, which is consistent with previous studies [10, 11]. Additionally, FMS was able to distinguish symptomatic patients with COVID-19 from those presenting with fever or ARI symptoms without COVID-19. The reason why the yield of FMS would be less in those presenting with ARI symptoms alone without fever is unclear, but we postulate that it may have been affected by the subjectivity of reported symptoms, whereas fever may have been a more objective measurement.

Table 3.

Study costs and operational considerations for facemask sampling

Item	Cost/test (Singapore dollar)	Other considerations
1. Surgical looped facemask (Assure)	$0.13	Any facemask, even reusable facemasks which have been washed and dried, can potentially be used for sampling with strips. On the other hand, swabbing the inner surface of the facemask may result in variability depending on the mask type and method of swabbing
2. Steri-Strips (3 M)	$1.20
3. Disposable sterile forceps	$2.50	Wound closure strips are widely available
4. Equipment and reagents for sample collection and SARS-CoV-2 RT-PCR	As per laboratory
Operational considerations
1. Minimal training needed to perform sample collection, and the use of sterile forceps enables it to be done in an aseptic manner to reduce contamination
2. Facemask sampling with removable strips can be operationalized into batch testing

We also observed that an NPS/OPS Ct value < 25.09 was the value upon which FMS would turn positive by PCR. This tight correlation between NPS/OPS Ct values and detection on FMS remained consistent even though the samples had been sent to six different laboratories and processed with different protocols and reagents. In asymptomatic patients, FMS only picked up asymptomatic patients with NPS/OPS swab Ct value < 24. However, the sensitivity and specificity of FMS in asymptomatic patients were limited in this study, as most of our asymptomatic patients had NPS/OPS swab Ct values > 24.

Ct values have been used as a surrogate marker for “viral load,” with a low Ct value indicating a high viral RNA amount, and vice versa. Because SARS-CoV-2 can remain detectable in NPS/OPS swabs for up to 5 weeks after onset of symptoms, even though patients are no longer infectious [15], not having the means to differentiate infectious patients from those who have limited or no transmission risk has meant that many swab-positive patients may have been isolated unnecessarily and kept in quarantine over prolonged periods [16, 17]. Therefore, there has been an increasing debate regarding defining Ct thresholds or cutoffs to differentiate infectious patients from noninfectious or recovering COVID-19 patients to guide isolation or deisolation policies. Several studies have attempted to evaluate the correlation between NPS/OPS swab Ct values and SARS-CoV-2 recovery in cell culture. In a multicenter cohort of 73 COVID-19 patients in Singapore, when the Ct value was ≥ 30, no virus could be isolated [18]. Another report suggested that a Ct value > 33–34 was not associated with cell culture viral recovery [19], and another showed that only those with Ct mean average values of 18.8 ± 3.4 and median of 18.17 had virus recovery in cell culture [20]. Cell culture infectivity was no longer observed when Ct values were above 24 and after 8 days from symptom onset in one study [21]. Two virus culture studies found that no infectious isolates were obtained from any sample taken after day 8 of symptoms despite ongoing high viral loads [19, 22]. Although only the minority of patients with higher Ct values have a cultivable virus, the issues of operator-dependent variability, the lack of quantitative assays, and the lack of standardization across tests make it challenging for a consensus on Ct value thresholds and infectivity to be reached.

Although the sensitivity of FMS is lower than the reported figures for midturbinate, anterior nasal, combined NPS/OPS, or saliva as compared to NPS alone [23], it has the advantages of low cost, accessibility, and noninvasiveness, and, if combined with rapid antigen detection technologies, may potentially have rapid sample-to-diagnosis time — and hence can be of high cost-effective epidemiological value in settings where broad, regular, mass screening is required [16, 24]. With increasing cultural adaptation to mask wearing, widespread utilization of FMS can potentially be easy to execute to allow frequent testing — even up to multiple times per week. As FMS is highly sensitive at the early stage of illness, even potentially in asymptomatic patients, and in patients with low Ct values, a strategy of frequent mass surveillance can potentially identify those at the beginning of infection for timely isolation to stop onward spread, while dovetailing efforts for more detailed testing and quarantine if necessary.

Limitations

There are several operational limitations of this study which need to be addressed.

Firstly, it is a single-center study with small sample size. Although we had initially aimed to recruit at least 200 patients, the drastic decrease of COVID-19 cases in Singapore after July 2020 curtailed our recruitment.

Secondly, a portion of our positive cohort was asymptomatic and was incidentally discovered through routine biweekly NPS/OPS screening of high-risk groups which were being conducted at the time. For these asymptomatic patients, it was not possible to ascertain the duration of infection — and their high NPS/OPS Ct values suggested that most of them may have been at the recovery or noninfectious phase of illness.

Thirdly, due to operational workflows in our institution at the time, FMS was not done on the same day as NPS/OPS swabbing and swabs were performed by different healthcare workers and processed by different laboratories. Nevertheless, healthcare workers in our institution had undergone training on a single NPS/OPS collection protocol, which would decrease the heterogeneity of the reported NPS/OPS Ct values.

Fourthly, we are unable to definitively exclude the possibility of facemask strip contamination by external droplets or biological fluids. Indeed, extensive environmental contamination by SARS-CoV-2 in the environments of infected patients has been demonstrated in multiple studies in healthcare and community settings [9, 25–27]. Nevertheless, in our study protocol, the study facemasks were worn for specific periods of time by patients singly housed in negative-pressure isolation rooms and who were only visited by staff in full personal protective equipment. Sterile single-use forceps were used by trained personnel to transfer the wound closure strips immediately from the facemask directly into transportation vials. Therefore, external contamination of the facemask strips would have been highly unlikely.

In real-life situations, however, external contamination during self-collection of the strips can result in confounding false-positive results. Potential avenues to mitigate this include the use of rapid antigen detection technologies that bypass the steps needed for sample processing for RT-PCR. Conversely, empty or inadequately worn masks can result in false-negative facemask strips. We speculate that the addition of accessory detectors such as end-tidal carbon dioxide detector strips, which can semiquantitatively measure the amount of exhaled gases by virtue of carbon dioxide detection, or starch strips which changes color on contact with saliva, can serve as proxies for oropharyngeal or nasopharyngeal exposure — these also have the benefit of being potentially adaptable for rapid point-of-care facemask sampling. Alternatively, further studies could be done to see if introducing vocal maneuver, such as purposeful open-mouth breathing or coughing, would help to increase the sensitivity. False-negative results due to the presence of inhibitors of PCR amplification are unlikely due to the use of internal extraction and amplification controls.

Conclusions

As pandemic efforts mature and pivot towards strategies that allow for the “return to normalcy,” new methods for sustainable and broad-based screening are crucial for the gradual reopening of societies. FMS using widely available materials can offer the potential for easy screening of febrile patients during the early infectious phase of illness and thus facilitate timely isolation decisions.

Funding

Singapore General Hospital COVID-19 Resilience Innovation Grant. Low J.G.H. is funded by the National Medical Research Council, Singapore, through the Clinician Scientist Award.

Data availability

Nil.

Code availability

Nil.

Declarations

Ethics approval

Ethics (CRIB reference number: 2020/2343) and biosafety approvals were obtained for this study.

Consent to participate

All patients gave verbal informed consent to the study.

Consent for publication

Not applicable.

Conflict of interest

The authors declare no competing interests.