Abstract
In skeletal muscle tissue, an intriguing mechanical coupling exists between two ion channels from different membranes: the L-type voltage-gated calcium channel (CaV1.1), located in the plasma membrane, and ryanodine receptor 1 (RyR1) located in the sarcoplasmic reticulum membrane. Excitable cells rely on Cavs to initiate Ca2+ entry in response to action potentials. RyRs can amplify this signal by releasing Ca2+ from internal stores. Although this process can be mediated through Ca2+ as a messenger, an overwhelming amount of evidence suggests that RyR1 has recruited CaV1.1 directly as its voltage sensor. The exact mechanisms that underlie this coupling have been enigmatic, but a recent wave of reports have illuminated the coupling protein STAC3 as a critical player. Without STAC3, the mechanical coupling between Cav1.1 and RyR1 is lost, and muscles fail to contract. Various sequence variants of this protein have been linked to congenital myopathy. Other STAC isoforms are expressed in the brain and may serve as regulators of L-type CaVs. Despite the short length of STACs, several points of contacts have been proposed between them and CaVs. However, it is currently unclear whether STAC3 also forms direct interactions with RyR1, and whether this modulates RyR1 function. In this review, we discuss the 3D architecture of STAC proteins, the biochemical evidence for their interactions, the relevance of these connections for functional modulation, and their involvement in myopathy.
Keywords: adaptor protein, allosteric regulation, calcium channel, excitation–contraction coupling, structure–function, ryanodine receptor, skeletal muscle
Abbreviations: CaM, calmodulin; CDI, calcium-dependent inactivation; CTD, C-terminal domain; EC, excitation-contraction; MH, malignant hyperthermia; NAM, Native American myopathy; RyR1, ryanodine receptor 1; SR, sarcoplasmic reticulum; STAC, Src homology three and cysteine rich domain; VDI, voltage-dependent inactivation; VSD, voltage-sensing domain
Excitation–contraction coupling in muscle is the process whereby an electrical signal—a depolarization of the plasma membrane—leads to muscle contraction. The main step in this process is the release of Ca2+ from the sarcoplasmic reticulum (SR) in response to the depolarization. This process requires a highly specialized membrane system. The muscle plasma membrane, the sarcolemma, contains invaginations known as transverse tubules (T-tubules), which are flanked on either side by parts of the SR, forming the “triad” (Fig. 1). This allows for a very specialized signaling that involves two membrane proteins. Voltage-gated calcium channels (CaVs) located in the T-tubular membrane undergo conformational changes upon depolarization, resulting in the influx of Ca2+ from the extracellular space. Ryanodine receptors (RyRs), located in the SR membrane proximal to the CaVs, are then triggered to open, resulting in the release of Ca2+ from the SR. RyRs thus amplify the Ca2+ signal, a process that is key for muscle contraction. This process is fundamentally different in cardiac versus skeletal muscle. In both tissues, Ca2+ ions that enter through CaVs can bind to sites on the nearby RyRs, stimulating their opening. Ca2+ release by one RyR can also trigger neighboring RyRs. This process is known as calcium-induced calcium release (1). In skeletal muscle, however, the influx of Ca2+ is not a prerequisite for opening of RyRs (2, 3, 4). A widely accepted model is that conformational changes in CaV1.1, the skeletal muscle isoform, are transmitted mechanically to ryanodine receptor 1 (RyR1). Thus, RyR1 has recruited CaV1.1 as its voltage sensor, allowing for voltage-induced calcium release. This coupling is not unidirectional, as the presence of RyR1 also affects the gating of CaV1.1, including an increased current amplitude and altered activation kinetics (5, 6). Also called “retrograde” coupling, RyR1 seems to behave as an auxiliary protein that modulates CaV1.1.
Coupling between Cavs and RyRs is not exclusive to muscle tissue. For example, it has also been observed in the central nervous system, including cerebellar granule cells, sensory neurons, and hippocampal neurons (7, 8, 9, 10). In some cell types coupling may occur via direct interactions (11). Such signaling may regulate neuronal gene expression and synaptic plasticity (12).
Because of the critical role of these channels in muscle function, any mutation that affects either protein can have devastating consequences, often resulting in congenital myopathies. Similarly, mutations in the coupling protein STAC3 have been linked to “Native American myopathy” (a.k.a. “STAC3 disorder”), a neuromuscular disease that shares symptoms usually ascribed to RyR1 mutations. Thus, a complete picture of both the normal and pathophysiological mechanisms requires a full understanding of the entire “excitation–contraction complex.” To sketch a more precise role for STAC3 in this process, we first highlight the main features of two major players in excitation-contraction (EC) coupling: the channels CaV1.1 and RyR1.
Voltage-gated calcium channel architecture
Voltage-gated calcium channels are plasma membrane channels that are key regulators of many physiological processes in excitable cells (13). Upon depolarization of the plasma membrane, these channels open, resulting in the influx of extracellular Ca2+ into the cytosol. All CaVs contain an α1 subunit that is responsible for voltage sensing and includes the permeation pathway for Ca2+. Ten isoforms of α1 subunits are known in humans, which can be grouped into three classes: Cav1 (L-type), Cav2 (P/Q-, R-, N-type), and Cav3 (T-type). The α1 subunit conforms to the classic voltage-gated calcium and sodium channel architecture, consisting of four homologous but nonidentical repeats (Fig. 2). Each repeat contains six transmembrane (TM) helices (S1–S6): S1–S4 form the voltage-sensing domain (VSD), whereas S5 and S6 contribute to the pore-forming domain. These repeats are connected by variable, disordered intracellular loops (I-II loop, II-III loop, III-IV loop). The N and C termini are also cytoplasmic with the latter hosting interactions with several regulatory proteins (14). Members of the CaV1 and CaV2 families also contain auxiliary subunits, including an intracellular β subunit, an extracellular α2δ subunit and, in some cases, a 4-TM γ subunit.
Skeletal muscle exclusively expresses Cav1.1, whereas cardiac myocytes mostly express CaV1.2 with a small amount of CaV1.3 in atrial myocytes (13). Cryo-EM studies have shed light on the structure of CaV1.1, obtained from rabbit skeletal muscle tissue (Fig. 2) (15). The CaVβ subunit associates with the I-II loop and mediates trafficking and the activation and inactivation kinetics of the channel. Although poorly resolved in the cryo-EM density, crystal structures have revealed its architecture in more detail, resolving two structured domains (an SH3 and Guanylate Kinase or GK domain). The GK domain forms high-affinity interaction with the I-II loop (16, 17, 18, 19, 20). The two domains are separated and flanked by disordered regions. The α2δ subunit is entirely extracellular and thought to be membrane anchored through a lipid modification (21). The γ subunit is mostly membrane embedded, forming interactions with the VSD of Repeat IV.
In the context of EC coupling, cytosolic regions and subunits are possible candidates for mediating mechanical coupling. Indeed, a main role is attributed to the loop connecting repeats II and III (II-III loop) in CaV1.1, containing essential elements for the coupling to occur (22, 23). In addition, the CaVβ1a subunit, a particular splice variant of the β1 isoform, is also indispensable and its disordered C-terminal tail was found to be essential (24, 25, 26, 27). However, to date, unambiguous proof of interactions of these elements with RyR1 is lacking.
Ryanodine receptor architecture
RyRs are the largest known ion channels, with molecular weights exceeding 2 MDa (28). Three isoforms (RyR1–3) exist in humans and all mammalian species. Skeletal muscle mostly expresses RyR1, with a small amount of RyR3. RyR2 is the predominant isoform in cardiac myocytes. However, RyRs are found throughout the body, including the central nervous system (13, 29). All RyRs form homotetrameric assemblies, with each subunit containing ~5000 amino acid residues.
RyRs are related to voltage-gated channels, with a transmembrane region containing at least six (or possibly eight) transmembrane helices (30, 31, 32). Four of these constitute a pseudo-VSD, and two contribute to the pore. A remarkable feature is a large cytosolic cap, which contains >80% of the entire protein. This cap is readily visible in thin sections of muscle fibers as electron-dense protrusions that span almost the entire gap between the T-tubular and SR membrane (33). Figure 3 outlines the overall structure of the RyR1, as obtained via cryo-EM studies (30, 32, 34). The bulk of the cytosolic cap is built up by α-solenoid regions and a series of globular domains. The size of the protein enables binding of a wide range of auxiliary proteins and small molecules (35). The various domains exposed on the cytosolic surface are attractive candidates for possible interactions with other components that allow the mechanical coupling between CaV1.1 and RyR1 in skeletal muscle. The binding site for Ca2+ that is able to activate the channel is resolved (34) and is located next to a C-terminal Zn2+-finger domain immediately downstream of the last transmembrane segment.
RyRs are large allosteric proteins, such that conformational changes in regions far away from the pore can affect its opening. Cryo-EM studies have shown large movements of the cytosolic cap upon binding of activating ligands, such as Ca2+, ATP, and caffeine, and also by disease-associated mutations (34, 36, 37). A simplified description involves a “tilting” of the different subunits: the corners of the cytosolic cap move downward, whereas the center of the cytosolic surface moves upward and outward (Fig. 3). The implication for EC coupling is that, if conformational changes in CaV1.1 can stimulate a similar tilting of the cytosolic cap, it would indirectly facilitate or trigger opening of the RyR1 pore.
The search for the mechanism that enables the coupling has been ongoing for several decades and included a dissection of various regions in CaV1.1 and RyR1 that could form interactions with one another. One proposal included a direct interaction between the CaV1.1 II-III loop and a domain known as SPRY2 in RyR1 (38), but another study failed to confirm this contact (39). Direct contacts have also been suggested from freeze-fracture studies, which showed a tetrad of CaV1.1 channels juxtaposed to a single RyR1 (40). However, this does not preclude the presence of other small proteins that may link both channels. Although the field stagnated for a while, the appearance of STAC3 has spurred a new wave of investigations.
STAC3 in excitation–contraction coupling
In 1996, Watanabe and coworkers cloned cDNA encoding a small 403-amino-acid protein from mouse brain (41). Sequence analysis revealed the presence of an SH3 domain and cysteine-rich region, and hence the protein was called “STAC” (Src homology three and cysteine rich domains). Its function remained unknown for many years, but in 2013 two independent groups discovered that STAC3, a different isoform, is a critical component in skeletal muscle EC coupling. Using a forward genetic screen in zebrafish, Horstick et al. (42) isolated an autosomal recessive mutant with severe motor behavior defects. These zebrafish die as larvae and defective motor behaviors manifest early in development. After ruling out malfunction in the nervous system, contractile machinery, triad anatomy, and calcium stores the authors noted reduced calcium transients in the muscles, indicative of a defect in EC coupling. Mapping the mutation to the gene encoding STAC3, they determined that their isolated mutant resulted in a functionally null protein that, owing to a premature stop codon, was not synthesized. Mutant rescue experiments successfully restored calcium transients with wildtype STAC3. Pull-down assays showed that STAC3 immunoprecipitates with both Cav1.1 and RyR1, suggesting possible direct interactions. Similarly, Nelson et al. (43) found, through a knockout (KO) mouse model and primary myoblast culture, that STAC3 is required for EC coupling and localizes to the triad. STAC3-null mice are completely paralyzed and die at birth owing to asphyxia. They also found defects in muscle development, mass, and morphology. These findings led to renewed enthusiasm in the search for the elusive link between Cav1.1 and RyR1.
In humans, STAC3 is encoded by a gene in chromosome 12q13-14; it is a 364-residue (41 kDa) soluble protein expressed predominantly in skeletal muscle (43, 44). Protein and mRNA profiles confirm there is no STAC3 expression in cardiac or smooth muscle, and since these do not display the mechanical coupling, this would confirm a role for STAC3 specifically in skeletal muscle EC coupling. A more detailed sequence analysis shows that it consists of an N-terminal poly-Glu region and a C1 domain linked via intrinsically disordered regions to tandem SH3 domains (41). Two other isoforms, STAC1 and STAC2, also exist and share high sequence identity with STAC3; they are expressed in a variety of tissues including the brain, reproductive system, and endocrine system (45).
The complexity of muscle tissue makes it hard to decipher which components are essential for EC coupling and which are only modulators. Recently, EC coupling was recapitulated in nonmuscle cells and required the heterologous expression of only five components: Cav1.1, RyR1, CaVβ1a, STAC3, and a protein known as junctophilin (Fig. 1) (46). The latter is thought to organize the local membrane arrangement, by virtue of a C-terminal transmembrane helix, spanning the SR membrane, and an N-terminal MORN repeat domain that binds phospholipids in the T-tubular membrane (47). The Junctophilin 2 isoform was used in the study. This assembly of proteins is functional in tsA201 cells, with a depolarization of the plasma membrane resulting in Ca2+ release. Freeze-fracture electron microscopy confirms that a physical link is formed between the two calcium channels under these conditions wherein tetrads (corresponding to Cav1.1) are aligned with the RyR homotetramers. As each of the five components was essential for recapitulating EC coupling, this confirms STAC3 as a fundamental component. However, it cannot be excluded that other proteins, natively expressed in tsA201 cells, are also involved in the process.
The link between CaV1.1 and RyR1 is not unidirectional. The activation of RyR1, after depolarization of the plasma membrane, is also known as an “orthograde” signal. However, the presence of RyR1 also affects the properties of CaV1.1: RyR1 quickens the activation kinetics and increases the amplitude of current through Cav1.1, a phenomenon also known as “retrograde” coupling (5). Of interest, when all auxiliary subunits (β, α2δ, and STAC3) were coexpressed with CaV1.1 in tsA201 cells, the currents were remarkably similar to those in myotubes, despite the absence of RyR1 (48). Myotubes in which STAC3 is knocked out display conductive properties nearly identical to dyspedic myotubes (lacking RyR1), implying that STAC3 is required also for retrograde coupling (49).
Having presented an overview of the EC coupling machinery in skeletal muscle, we will now discuss what is known to date regarding the structure, function, and interactions of the STAC domains. Table 1 summarizes the various proposed interactions of CaV channels with domains in STAC.
Table 1.
Protein | Domain | Residue range | Binding partner | Functional significance | Expression system | Reference |
---|---|---|---|---|---|---|
STAC | C1 domain | 93–150 | Cav1.2 | Stable interaction, CDI | Dysgenic myotubes, tsA201 cells | (69) |
U-motif | 174–191 | Cav1.2, Cav1.3 | CDI | HEK293 cells | (77) | |
Linker region | 171–289 | Cav1.2 | CDI | tsA201 cells | (76) | |
Tandem SH3 | 245–364 | Cav1.1 II-III loop | ECC | Purified protein | (56) | |
Cav1.1 | II-III loop | 747–760 (minimal peptide) | STACa SH3 domains | ECC | Purified protein | (56) |
II-III loop | 745–765 | STACa SH3 domains | ECC | STAC3-null myotubes, tsA201 cells | (59) | |
Cav1.2 | Proximal CTD (IQ) | 1689–1716 | STACa | CDI | Dysgenic myotubes | (78) |
Proximal CTD | 1526–1858 | STACa | CDI | tsA201 cells | (76) | |
Cav1.3 | Proximal CTD (EF + pre-IQ) | 1463–1593 | STACa | CDI | HEK293 cells | (77) |
Cav3.2 | Distal NTD | 51–100 | STAC1 | Trafficking | tsA201 cells | (67) |
Abbreviations: CDI, calcium-dependent inactivation; ECC, excitation–contraction coupling.
All residues numbering is for the human isoform and the STAC numbering corresponds to STAC3.
The interaction is shown for all isoforms.
Domain architecture
STACs are composed of an N-terminal C1 domain linked via an intrinsically disordered region to two SH3 domains (41). C1 domains are typically lipid-binding modules originally described in protein kinase C (50). However, they also frequently act as protein–protein interaction motifs (51, 52, 53). An NMR structure is available for the STAC3 C1 domain (PBD ID 2DB6), although a description of this structure has not been published. The structure shows a typical C1 domain fold, with two Zn2+ ions bound. In each site, the Zn2+ is coordinated by three cysteines and one histidine (Fig. 4) (54). The region adjacent to the C1 domain, part of the NMR ensemble, is disordered. Secondary structure elements are limited to two antiparallel beta strands and a short alpha helix. In other proteins, C1 domains have been shown to be involved in lipid binding, namely, diacylglycerol or phorbol esters. Even among C1 domains with high sequence similarity, some are sensitive to lipids, whereas others (termed atypical) are not (50). Figure 4 shows the NMR structure of the PKCδC1B domain in complex with 13-acetylphorbol. Ligand binding does not induce significant conformational change in the protein (55). The lipid occupies a binding groove and hydrogens bonds the backbone of several residues. In STAC3, this groove is occupied by the sidechains of L115 and V111, which would clash with the ligand. Therefore, binding of phorbol esters to the STAC C1 domain would require substantial conformational changes. In addition, the electrostatic potential profiles of the proteins differ, with STAC3 having many positively charged residues surrounding the proposed binding pocket (Fig. 4). Although this makes the STAC3 C1 domain less likely to bind lipids, this remains to be verified experimentally.
SH3 domains are common protein-interaction modules that bind proline-rich segments containing a PxxP motif. We have recently solved high-resolution crystal structures of the tandem SH3 domains of all STAC isoforms (Fig. 4). Each domain is composed of a five-stranded anti-parallel beta sheet and short 310 helix (56, 57). The two domains are connected by an unusually short linker of only five residues, and their interface is extensive with many hydrophobic interactions. As a result, the two SH3 domains form a rigid unit, rather than forming two beads on a flexible string. They can thus form one continuous interface with another protein. The fold of all three isoforms is very similar.
There is no structural information available for either the N terminus or linker region of STAC3, although they are predicted to be disordered based on sequence. Thus, the C1 and tandem SH3 regions are likely very mobile relative to one another.
A critical interaction for EC coupling
The cytoplasmic linker between repeats II and III of Cav1.1 is a region long known to be critical for EC coupling (22, 23, 58). This linker region is sufficient to endow the cardiac isoform (Cav1.2) with the ability to support mechanical coupling in dysgenic (Cav1.1−/−) myotubes (22, 58). Through isothermal titration calorimetry we have shown that the proline-rich II-III loop binds to STAC proteins with low micromolar affinity (56). The “minimal motif” of Cav1.1 for this interaction comprises residues 747 to 760, containing three key proline residues, although a longer region encompassing residues 728 to 778 has higher affinity, suggesting there are additional binding determinants outside the minimal motif. Using colocalization as an indication of interaction, all STAC isoforms bind the II-III loop of Cav1.1 in tsA201 cells (59). Disrupting this interaction interferes with EC coupling and causes congenital myopathy (Fig. 5E) (56, 60).
We obtained a structure of the STAC2 SH3 domains in complex with a minimal peptide of the Cav1.1 II-III loop (Fig. 4). Central to this interaction on the side of STAC2 is W329 (equivalent to W284 in STAC3); when substituted to a serine, the binding to Cav1.1 is no longer detectable via isothermal titration calorimetry (56, 57). The first SH3 domain of STAC is the main contributor to binding; however, it alone has ~40-fold weaker binding compared with the tandem domains (56). The second SH3 domain contributes to binding through a water-mediated hydrogen bond, and likely also through general electrostatic interactions with negative charges on the II-III loop. However, this does not involve the area of this second SH3 domain that would form canonical interactions with proline-rich ligands. As this latter site remains unoccupied, it is thus free to potentially bind another protein. Molecular dynamics simulations predict that STAC3 binds the Cav1.1 peptide in a nearly identical manner to STAC2, despite several differing residues at the interface for these isoforms (57).
Cryo-EM studies have revealed the structure of CaV1.1 at greater than 3-Å resolution (61). However, owing to high intrinsic mobility, the cytosolic II-III loop and carboxy tail remain largely unresolved (Fig. 2). The next step would be a cryo-EM structure of STAC3 in complex with Cav1.1, allowing insights into the allosteric regulation STAC3 may have on this calcium channel.
Having established STAC3 as an important auxiliary protein in the functional coupling between Cav1.1 and RyR1 in skeletal muscle, we will delve into other diverse regulatory roles of STAC proteins discovered so far. To date, the roles have mostly focused on regulation of L-type CaV channels.
Functional effects of STACs on Cav channels
Channel trafficking
One unique property of Cav1.1 among CaVs is that it does not express well in nonmuscle cells (62, 63, 64). Although coexpression of Cav1.1 with the β and α2δ subunits gives low baseline membrane expression, this complex is mostly retained in the endoplasmic reticulum of heterologous systems (48, 65), and this has hampered systematic functional investigation of CaV1.1 via heterologous expression. However, when coexpressed also with STAC3, Cav1.1 robustly traffics to the plasma membrane (60). This complex shows conductive properties similar to those in myotubes. Conversely, myotubes and myofibers that lack STAC3 show reduced expression of both CaV1.1 and RyR1 (43, 49, 66).
Appreciable membrane expression of Cav1.1 can also be achieved when expressed with the γ-subunit in addition to β and α2δ, although this complex lacks normal Ca2+ currents (48). Calmodulin (CaM), which interacts with the carboxy tail of Cavs, can also rescue trafficking deficits for Cav1.1 (65). Truncation or replacement of the C-terminal domain (CTD) of the channel also increases surface expression. As such, STAC3 and CaM may mask a retention signal in the CTD, albeit by different mechanisms. Overall, STAC3 facilitates, but is not required for, trafficking of Cav1.1 to the plasma membrane. Analogously, STAC1 promotes surface expression of T-type Cav3.2 channels (67). This regulation depends on STAC1 binding the distal N-terminal domain. As experiments with CaV1.1 in heterologous expression systems were previously impractical, the ability of STAC to enhance expression now provides more opportunity for structure–function studies (46, 68).
Originally, experiments with fluorescently tagged STAC3 in dysgenic (Cav1.1 −/−) and STAC3-KO myotubes indicated that Cav1.1 is required for triad targeting of STAC3 (48, 69). That is, in the absence of Cav1.1, transfected STAC3 was diffusely spread through the cytoplasm. Conversely, a later report used an isoform-specific antibody to label endogenous STAC3 in myotubes and muscle fibers providing evidence to the contrary (70). Immunostaining suggests that STAC3 colocalizes with RyR1 in the absence of Cav1.1. The authors propose a competition model, where association of endogenous STAC3 is sufficiently strong in the triad as to prevent replacement with tagged STAC3. Cav1.1 presents additional binding sites, which can be occupied by exogenous protein. The recent generation of a double Cav1.1-STAC3 KO myotube cell line may provide further insight into this tentative model (57).
Armed with an improved understanding of how STAC proteins help transport of Cavs to the plasma membrane, we will describe their effect on the channels once they arrive at the plasma membrane, namely, the influence on calcium currents.
Calcium-dependent inactivation
Precise control of the current through voltage-gated calcium channels is critical for maintaining the proper Ca2+ signals in excitable cells. As such, negative feedback mechanisms exist, including voltage- and calcium-dependent inactivation (VDI and CDI), which readily reduce the currents (13). The mechanisms of these processes are not fully understood, but the ubiquitous calcium-sensing protein CaM is a critical regulator of CDI (71, 72, 73). CaM interacts with the IQ domain in the carboxy terminus of Cavs, as well as with an N-terminal region known as NSCaTE, present in some isoforms (74). In electrophysiology experiments, CDI is observed as an enhanced decay in currents when Ca2+ is used as a charge carrier versus Ba2+ (Fig. 5B). Several studies have demonstrated that STAC proteins inhibit both types of inactivation in L-type channels, although the effect on CDI has been investigated more thoroughly (Fig. 5, A and B) (56, 75). STACs do not appear to have any effect on calcium-dependent inactivation or calcium-dependent facilitation of non-L-type channels (Cav2.1 or Cav2.3) or Nav1.4 (76, 77).
Whole-cell calcium currents in tsA201 cells reveal that coexpression with STAC3 substantially reduces CDI of Cav1.2 (Fig. 5B) (48). This effect of STAC proteins in general is confirmed in Xenopus oocytes, rat hippocampal neurons, and HEK293 cells; it holds true also for Cav1.3 and Cav1.4 (56, 76, 77). However, inhibition by STAC1 and STAC2 in tsA201 cells depends on the calcium buffering conditions: reduction in CDI is considerably weaker under 0.5 mM EGTA than under 10 mM EGTA (78). Mechanistically, single-channel recordings show that STAC-bound channels preferentially adopt a high open probability mode (77).
Colocalization and electrophysiology experiments with Cav1.2/Cav2.1 chimeras in dysgenic cells suggest the proximal CTD is necessary for regulation by STACs (78). This region contains the IQ motif, known to bind CaM (71, 73). STAC3 fails to abolish CDI when Cav1.2 harbors the IQ domain of Cav2.1. Indeed, the key residues for STAC association overlap with those for CaM binding, suggesting that STAC may block CaM regulation. In contrast, using FRET 2-hybrid assays, Niu et al. (77) found that STACs have a 10-fold higher affinity for the EF-hand and pre-IQ motif than the IQ domain. A fusion channel with CaM tethered to the C terminus retains STAC inhibition, implying STACs are not competitive inhibitors of CaM. Finally, using fragments of Cav1.2 tagged with a surface-targeting peptide in tsA201 cells, Polster et al. (76) determined that multiple regions of the carboxy tail are important for STAC colocalization. However, the Pearson’s coefficient was similar with and without the IQ domain, arguing against its importance.
Also controversial are the corresponding regions of STAC important for CDI regulation. One consistent consensus is that the SH3 domains are dispensable for this function. Two independent studies agree that the disordered linker region between the C1 and SH3 domains is sufficient to abolish CDI, whereas the other isolated domains cannot (76, 77). One study specifically identified a 22-residue “U-motif” responsible for CDI suppression (77). This peptide was able to disrupt CDI when applied to ventricular myocytes. The linker region is poorly conserved between STAC isoforms (Fig. 6A), despite the ability of all to regulate CDI (albeit to different degrees). However, several residues within the U-motif appear conserved (77). Alternatively, another study has implied the importance of the C1 domain instead (78). One possibility is that the U-motif is the critical element that mediates the suppression, whereas the C1 domain can further stabilize the complex (Fig. 5D).
Using fluorescence recovery after photobleaching and chimeric experiments, Campiglio et al. (69) showed that STAC3 is stably incorporated into the Cav1.1 complex in dysgenic myotubes. Its turnover rate is comparable with that of Cavβ. In this system, the interaction is isoform specific on the side of STAC: STAC3 colocalizes with both Cav1.1 and Cav1.2, whereas STAC1 colocalizes only with Cav1.2 and STAC2 only poorly with CaV1.2. Absence of STAC2 binding allowed the authors to home in on the responsible domain by systematically replacing domains of STAC2 with those of STAC3. They deduced that the C1 domain is required for the stable interaction (Fig. 5C) and identified two critical residues (V104 and Y133) that likely form a protein-binding pocket. However, the isolated C1 domain cannot colocalize with Cav1.2 suggesting that other regions of the protein also facilitate this interaction. On the contrary, in STAC3-null myotubes and tsA201 cells, STAC1 and STAC2 do colocalize with Cav1.1. Dysgenic myotubes contain endogenous STAC3, which may compete with the other STAC isoforms. In STAC3-absent systems the C1 domain appears expendable for colocalization. Accordingly, multiple regions are likely responsible for STAC association with Cavs; these may diverge between the Cav isoforms.
Of interest, the ability of STAC3 to suppress CDI through interactions with the EF-hand motif is reminiscent of fibroblast growth factor homologous factor proteins, which can abolish CDI of NaV1.4 (77). These fibroblast growth factor homologous factor proteins reorient the EF-hand domain relative to the IQ domain (79, 80, 81, 82, 83), possibly interfering with the ability of Ca2+/CaM to bind to the IQ domain (81). In a clever experiment, an artificial CaV1.3 channel was engineered, containing a binding site for an SH3 domain from the adaptor protein Mona, just upstream of the IQ domain. Addition of this SH3 domain abolished CDI, showing that binding of proteins to the EF-hand domain and surrounding regions is a general mechanism through which CDI can be modulated (77). These parallel findings further stress that interactions between STAC3 and the CTD of L-type CaV channels have the ability to eliminate CDI.
STAC proteins thus function as potent inhibitors of the negative feedback mechanisms of Cavs. As the mechanism of CDI and VDI in voltage-gated calcium channels is incompletely understood from a structural viewpoint, further research is needed to fully understand the mechanism through which STAC interferes with it. Based on the cryo-EM structure of Cav1.1, the II-III loop would be adjacent to the C-terminal region in three-dimensional space, implying steric compatibility for interactions of the SH3 domains, C1 domain, and the U-motif with their proposed partners. In adult skeletal muscle, current activation through Cav1.1 requires 30 mV stronger depolarization than for EC coupling. Therefore, its primary function is not as a calcium channel, but rather as a voltage sensor. However, calcium currents may play a role in muscle differentiation and prolonged activity (84). In addition, it remains controversial whether Cav1.1 experiences CDI in a native physiological setting. Accordingly, it is difficult to speculate about the effect that inhibition of CDI by STAC3 may have in skeletal muscle. However, L-type calcium currents in a variety of neuronal cell types are prolonged and slowly inactivating (85, 86, 87). Diverse Ca2+-dependent processes like gene regulation and synaptic transmission may be affected by such Cav modulation.
Muscle differentiation
STAC3 is implicated in several studies as a regulator of skeletal muscle differentiation. Deletion of STAC3 from postnatal mice suggest its importance for skeletal muscle growth and fiber-type composition (88, 89). STAC3 deletion inhibited the transition from type I to type II fibers in fast twitch muscle. Depleted myofibers had greater SR-calcium release than controls. However, some of these results may be explained by lack of muscle activity affecting muscle size and fiber type (90). Separate studies have looked at the effect of STAC3 in differentiating C2C12 myoblasts, with differing conclusions. Ge et al. (91) found that the presence of STAC3 decreases the number of nuclei per myotube and reduces expression of myogenic markers, suggesting that STAC3 inhibits muscle differentiation. Similar results were found in bovine satellite cells (92). Conversely, Bower et al. (93) suggest that STAC3 is necessary for muscle differentiation, finding that knockdown via RNA interference inhibits myotube formation. Additional research is needed to reconcile these inconsistencies.
Does STAC3 interact with RyR1?
When STAC3 emerged as an essential component in EC coupling, the possibility arose that it could physically link CaV1.1 and RyR1 in skeletal muscle, by interacting with both channels simultaneously. Although the interactions between STAC3 and CaV1.1 are now well established and functionally verified, there is currently no unambiguous evidence for an interaction between STAC3 and RyR1. Although STAC3 is critical for the coupling, one possibility is that STAC3 alters the conformation of CaV1.1, including the II-III loop, thus stimulating direct interactions between CaV1.1 and RyR1. Another alternative is that STAC3 may recruit another protein, which then in turn interacts with RyR1.
There is indirect evidence that STAC3 may interact with RyR1, although this is inconclusive. For example, coimmunoprecipitation studies showed that RyR1 can pull down STAC3 and vice versa in zebrafish muscle (42). However, this is still compatible with an indirect interaction. A study with dysgenic myotubes, which lack CaV1.1, showed that heterologously expressed STAC3 was no longer incorporating into triads, in contrast with wildtype or dyspedic myotubes (the latter lacking RyR1) (48, 69). Although this solidifies Cav1.1 as a main binding partner for STAC3, it does not exclude the possibility that STAC3 can still bind RyR1, albeit weakly. Another study with an antibody against endogenous STAC3 did show STAC3 clustering in the triads of dysgenic myotubes (70). One possibility is that this represents an additional STAC3-binding site in triads, which is not displaced with heterologously expressed STAC3.
Regardless of whether STAC3 forms interactions with RyR1, it is clear that any such interaction would be very weak, similar to the entire EC-coupling complex. It is conceivable that multiple weak interaction points exist, for example, between RyR1 and CaVβ1, RyR1 and STAC3, or RyR1 and the CaV1.1 II-III loop, but none of them is strong enough to be easily detected. Indeed, both RyR1 and CaV1.1 can be routinely purified from skeletal muscle for cryogenic-electron microscopy studies, but neither seems to copurify with significant amounts of the other channel (15, 30, 32). This also underscores the inherent limitation with traditional biochemical preparations: as one of the first steps to purify membrane proteins involves detergent solubilization, the intricate triad membrane system is immediately disrupted, thus eliminating the high effective concentration of these proteins in situ, with the interactions now too weak to hold the complex together. Subtomogram averaging of EC coupling complexes in situ provide the most likely avenue to solve the entire EC coupling puzzle.
Disease
STAC3 is the target for mutations causing the rare neuromuscular disease Native American myopathy (NAM) (42, 60). NAM is an autosomal recessive disease (94, 95, 96, 97). Cases were first identified in members of the Lumbee Tribe of North Carolina; the prevalence within this community is difficult to estimate because of their cultural isolation (98). Since then, multiple STAC3 mutations, including the founder W284S mutation, have been identified in patients worldwide, so the name NAM is now a misnomer. We propose to use the term “STAC3 disorder” instead, which we will use from here on. Symptoms include short stature, muscle weakness, delayed motor development, cleft palate, scoliosis, and susceptibility to malignant hyperthermia (MH) (Table 2) (99). The last one is a disorder characterized by a hypermetabolic response upon administration of volatile anesthetics during surgery or muscle relaxants like succinylcholine (100). If untreated with dantrolene, MH can be fatal. It typically associates with mutations in RyR1, so its association with STAC3 further highlights the fact that these proteins are part of a larger complex. Many of the STAC3 disorder symptoms necessitate corrective surgery, which can then trigger MH responses, leading to several instances of severe MH-induced disability in patients. In fact, the first case of STAC3 disorder was reported based on an MH episode in a 3-month-old infant undergoing feeding gastronomy surgery owing to her difficulty swallowing (101). There have been several cases where STAC3 disorder is misdiagnosed owing to lack of formal diagnostic criteria, leading to unsuspected adverse reactions under general anesthesia (94, 99, 102). It is estimated that approximately one-third of patients die before the age of 18 years, prevalently from MH episodes or respiratory failure (98). There is currently no cure or treatment for this severely debilitating disease. Prevention of fatal episodes may come with genetic testing for accurate diagnosis and improved understanding of the molecular mechanisms of disease.
Table 3.
Isoform | Binding partner | Functional role | Assay | Reference |
---|---|---|---|---|
STAC1 | YWHAE | 14-3-3 protein | AC | (107, 116) |
ANKLE2 | Mitotic nuclear envelope reassembly, brain development | AC | (116, 117) | |
KANK2 | Transcriptional regulation | 2H | (118, 119) | |
NCKIPSD | Stress fiber formation, angiogenesis | 2H | (119, 120) | |
YWHAZ | 14-3-3 protein | AC | (116, 117) | |
KIAA1958 | Uncharacterized | 2H | (118, 119) | |
LZTS2 | Microtubule regulator; Wnt signaling | 2H | (118, 119) | |
PARP2 | DNA repair | PA, ES | (121) | |
STAC3 | ZCCHC10 | Uncharacterized | 2H | (118, 119, 122) |
CSNK2A1 | Serine/threonine-protein kinase complex subunit | 2H | (118, 119, 123) | |
PPARA | Transcription factor | 2H | (119, 122) | |
FAM133A | Uncharacterized | 2H | (118, 119) | |
EAF1 | Transcriptional transactivator | 2H | (119, 124) | |
ENKD1 | Uncharacterized | 2H | (119, 124) | |
C1ORF35 | Uncharacterized | 2H | (119, 124) | |
WDR54 | ERK signaling pathway | AC | (116, 117) | |
GTF2F1 | Transcription initiation factor | AC | (116, 117) | |
SREK1IP1 | Splicing regulator | 2H | (118, 119) |
Abbreviations: 2H, two hybrid assay; AC, affinity capture; ES, enzymatic study; PA, protein array; RS, reconstituted complex.
Data curated from the BioGrid, HuRT, IntAct, and UniProt databases.
The most commonly reported mutation is a tryptophan to serine substitution at residue 284 in the first SH3 domain of STAC3 (42). This residue is central to the interaction with the proline-rich II-III loop of Cav1.1, forming a hydrogen bond and cation-pi interactions with the peptide (Fig. 4) (56). Several other variants are reported in clinical databases (Fig. 6), but the clinical significance and severity is unclear from the available data. We have shown that W284S, F295L, and K329N affect EC coupling by weakening the interaction with the II-III loop (Fig. 5E) (57). However, these variants did not have significant effects on the structure or stability of the SH3 domains. Of interest, H311R in the second SH3 domain does not reduce binding to the II-III loop, and it also affects EC coupling (57). This suggests that this region may interact with another triad protein, such as RyR1. Myofibers harboring the W284S mutation have reduced Cav1.1 expression and rightshifted voltage-gated Ca2+ release and release significantly more Ca2+ in response to caffeine than wildtype fibers (60, 65). The latter is a result of increased luminal SR Ca2+.
A de novo mutation was reported in one gene copy of a Turkish patient that introduced a premature stop codon in the first SH3 domain (K288stop) (95). EC coupling is expected to be abolished with this mutant as it relies on the integrity of both SH3 domains. We also examined a variant in which four residues within a beta strand of the second SH3 domain are deleted by aberrant splicing (96). We found via size exclusion chromatography that this protein was aggregated, implying it is misfolded, likely leading to the disease phenotype (57).
Several variants are within or flanking the U-motif (R173C, V185A, M187K, R192T); these may potentially interfere with STAC’s regulation of CDI. Of the variants in the C1 domain, none involve Zn2+-coordinating residues. P100 is located within the typical lipid-binding region of C1 domains, but as described above it seems unlikely that STAC3 binds lipids, putting to question the effects this mutation would have.
As STAC3 interacts with CaV1.1, one could expect corresponding mutations in Cav1.1 that would give rise to a phenotype similar to STAC3 disorder. Although CaV1.1 is also a known target for MH (103), so far, no mutations have been identified in the STAC3-binding site within the II-III loop. Such mutations have been found in CaV1.2: several patients with type 8 long QT syndrome harbor mutations in a short segment of the Cav1.2 II-III loop, which maps directly to the STAC-binding site (104). Unexpectedly, these patients experience arrhythmic symptoms and sudden death. Although these residues would affect STAC binding in neuronal CaV1.2, STACs are reportedly absent from cardiac tissue, so the cardiac phenotype could not easily be explained from this observation. Possibly, another SH3-domain-containing protein may associate with this region in cardiac tissue, and the mutations affect this interaction.
Although most STAC protein variants map to STAC3, a de novo missense mutation in STAC2 is implicated in childhood-onset schizophrenia. Of interest, variants in RyR2 have also been associated with this disorder (105, 106). In addition, another mutation in STAC2 is associated with severe myopia. Both variants are located in the N-terminal region, between a poly-proline sequence and the C1 domain (Fig. 6). These variants highlight the role of STAC proteins in other tissues, but where they have been less studied.
Thus overall, STAC proteins have also emerged as targets for various disorders. Although a subset of the sequence variants in the STAC3 tandem SH3 domains can be readily understood in terms of affecting interactions with the CaV1.1 II-III loop, a complete understanding of variants in other regions will only be possible with a more complete picture of the various additional protein–protein interactions in which STACs are involved. In the next section, we discuss the various additional putative binding partners and signaling pathways involving STAC proteins.
STAC proteins in other signaling pathways
Although STAC proteins are now firmly established as modulators for L-type CaV channels and critical elements for muscle EC coupling, emerging evidence suggests that they play roles in other signaling pathways. Several proteomics screens have identified potential interacting partners of STAC proteins, as summarized in Table 3. Of note, STAC proteins have putative roles in several signaling pathways. STAC1 interacts with 14-3-3 proteins, a family expressed abundantly in the central nervous system and involved in cell proliferation and apoptosis (107). A novel splice variant of STAC1 is implicated in senescence in human mammary fibroblasts, which limits the proliferation potential of the cell (108). However, the potential mechanism of its involvement is unknown. STAC2 interferes with the RANK signaling complex formation to negatively regulate osteoclast formation (109). This isoform has also been identified as a differentially expressed gene in multiple studies of breast cancer, a tissue in which it is abundantly expressed (110, 111). Although STAC3 was originally believed to be expressed solely in skeletal muscle tissue, a recent study has found it is also expressed in Leydig cells of the male reproductive system (112). Here, STAC3 depletion appears to disrupt steroidogenesis by inducing mitochondrial dysfunction. Although many of these interactions remain to be validated through quantitative binding assays, the role of STACs as regulatory proteins may thus extend well beyond ion channels. A word of caution is needed, however, in regards to large screens that have aimed to identify the interactome of STAC proteins. As STAC proteins contain large stretches of positively charged residues, cell lysis can result in nonspecific binding to nucleic acid, which in turn can interact with a host of other proteins. These may lead to false-positive hits. Indeed, our own purification procedures of STAC proteins have shown that nucleic acid readily copurifies, and stringent washing procedures are required to remove these for any crystallographic or quantitative binding assay.
Table 2.
Reference | Descent | Cases | Symptoms | MH episodes | STAC3 variant |
---|---|---|---|---|---|
(94) | Qatari | 2 | Hypotonia, myopathic facies, generalized weakness, ptosis, cleft palate, growth delay, kyphoscoliosis, asymmetric hip position, long face, swallowing difficulty | 2/2 | W284S |
Puerto Rican | 2 | Facial & generalized weakness, cleft palate, hypotonia, respiratory impairment, hearing loss | 1/2 | W284S, Leu255IlefsX58 | |
(95) | Turkish | 1 | Congenital muscle weakness, scoliosis, respiratory impairment, ptosis, short stature, delayed motor development, oral hypotonia | No | K288∗, c.432+4A>T |
(97) | N/A | 1 | Hypotonia, respiratory impairment, cleft palate, club feet, adducted thumbed, hip dysplasia, muscle weakness, scoliosis | Yes | W284S |
(96) | African, Middle Eastern, Comorian, South American | 17 | (Variable) hypotonia, talipes, contractures, cleft palate, respiratory impairment, limb weakness, ptosis, facial weakness, muscle atrophy, scoliosis, spinal rigidity, hearing loss | 9/17 | W284S |
Afro-Caribbean | 1 | Multiple contractures, hypotonia, respiratory impairment, cleft palate, elevated hemi-diaphragm, facial weakness, scoliosis, ptosis, myopathic face | Yes | W284S, Δ333IVVQ336 | |
(98) | Lumbee | 14 | (Variable) delayed motor development, myopathic face, ptosis, downturned mouth, cleft palate, micrognathia, congenital joint contractures, scoliosis 36% mortality rate |
4/14 | N/A |
(42) | Lumbee | 5 | Not indicated in publication | N/A | W284S |
Abbreviation: MH, malignant hyperthermia.
If only one allele is listed, the variant is homozygous. If two are shown, each corresponds to one gene copy.
mRNA expression profiles indicate that STAC1 and STAC2 are also highly expressed in some nonexcitable cells. Knockout mice of STAC1 and STAC2 are available and in both cases are homozygous viable. The International Mouse Phenotyping Consortium reports no significant phenotypes for either model, although the data are not complete (113). Owing to overlap of expression profiles and high sequence similarity, it is also possible that one STAC isoform could compensate for loss of the other in tissues in which they are both expressed. Hence, a double knockout of both STAC1 and STAC2 may be required to elucidate their physiological roles.
STAC proteins are an emergent class of ion channel regulators. Although they were originally discovered in neurons, their function in muscle has been the focus of most literature to date, leaving the functional consequences of neuronal STACs largely unexplored. STAC1 and STAC2 are abundantly expressed in the central nervous system; they affect VDI and CDI of L-type voltage-gated calcium channels expressed in the same regions. Inhibition of channel inactivation leads to prolonged calcium currents and may affect diverse downstream calcium signaling processes, such as excitation–secretion and excitation-transcription coupling. Thus, STACs may affect these processes, although this remains to be shown. DStac, homologous to mammalian STAC genes, is expressed in muscles and a subset of neurons in Drosophila melanogaster. As in mammals and zebrafish, it is required for locomotion. In addition, it was shown to regulate the release of the exogenously expressed neuropeptide Dilp-2 (insulin-like peptide 2) from motor neuron boutons (114). Specifically, release of Dilp2-GFP was decreased in boutons with DStac knockdown, or where the SH3 domain had been deleted via CRISPR-Cas9. This regulation likely arises through an interaction with the major L-type Cav in these neurons (Dmca1), whereby DStac affects the calcium current that triggers neuropeptide release. Proctolin is the neuropeptide endogenously expressed in these boutons, and its release increases muscle contractions. Another neuropeptide, pigment-dispersing factor, regulates circadian rhythm in Drosophila, suggesting that neuropeptide release could link previous findings that DStac is required for normal circadian rhythm (115). These findings provide the first known function for STAC proteins in neurons.
Conclusion
STAC3 is a critical component of skeletal muscle EC coupling and holds potential as the auxiliary protein linking Cav1.1 and RyR1. STAC proteins have a myriad of regulatory roles for voltage-gated calcium channels in which they mediate functional interactions, trafficking, and channel inactivation. Many details of STAC function remain contentious: still entangled are the roles of the various domains and yet undiscovered are additional interacting partners.
From a structural biology viewpoint, obvious directions include cryo-EM structures of complexes of CaV1.1 + STAC3, or between RyR1 + STAC3. As either membrane protein can be readily purified from muscle tissue, and since resolutions near 3 Å can be obtained, various details of STAC3 binding could be revealed. However, the possibility exists, especially for CaV1.1, that the binding only involves very flexible regions. Indeed, the II-III loop is invisible in cryo-EM reconstructions of CaV1.1 to date, so this would only be successful if STAC3 binding immobilizes this element by virtue of additional contact points. In the case of RyR1, an intrinsic problem may be in the low affinity, and cross-linking may therefore need to be considered. In the ideal scenario, the entire EC coupling complex would be captured, but this is unlikely to happen using standard cryo-EM methods, as the membrane system of the triad will need to remain intact. As such, cryo-electron tomography, along with subtomogram averaging will be a worthwhile endeavor.
Given the ability of STAC1 and STAC2 to regulate CDI of L-type CaVs in the central nervous system, it will be of particular interest to see whether this affects various downstream Ca2+-dependent processes. Finally, with the emerging list of STAC interactors, the door is open for quantitative and structural investigations, which will help validate the proposed binders. Although the roles of these eclectic adaptor proteins had long remained elusive, we are slowly beginning to unravel their biological importance.
Conflicts of interest
The authors declare that they have no conflicts of interest with the contents of this article.
Acknowledgments
We thank Dr Ciaran McFarlane for proofreading this manuscript.
Author contributions
B. R. visualization; B. R., writing-original draft; B. R. and F. V. P. writing-review and editing.
Funding and additional information
This work was funded by grants from the RyR1 Foundation and CIHR (grant #PJT159601) to F. V. P. and NSERC and UBC to B. R.
Edited by Roger Colbran
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