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. 2021 Jul 12;16(7):e0254002. doi: 10.1371/journal.pone.0254002

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

Thomas H A Samuels 1,2,¤a,#, Romain Wyss 3,#, Stefano Ongarello 3, David A J Moore 1,2, Samuel G Schumacher 3,‡,*, Claudia M Denkinger 3,¤b,
Editor: Frederick Quinn4
PMCID: PMC8274836  PMID: 34252128

Abstract

Introduction

A highly sensitive triage test that captures most symptomatic patients at increased likelihood of having pulmonary tuberculosis (PTB) would ‘rule-out’ lower-risk patients from expensive confirmatory testing. Although studies have assessed the diagnostic accuracy of a C-reactive protein (CRP) triage test for PTB in HIV+ patients, limited data are available from HIV- cohorts.

Materials and methods

In this retrospective case-control study, 765 serum samples were selected from FIND’s biobank. Each sample had been collected from an adult presenting with respiratory symptomatology to district hospitals in South Africa and referral hospitals in Cambodia, Peru, Georgia and Vietnam between 2007–2017. Serum CRP measurements were obtained using a laboratory-based assay. CRP cutoff-points of ≥8mg/L and ≥10mg/L were predefined as a positive triage test result. The PTB reference standard was two contemporaneously collected sputum liquid culture results.

Results

CRP demonstrated an overall sensitivity for PTB of 79.8% (95%CI 75.5–83.5) and 77.7% (95%CI 73.4–81.6) for cutoff-points of 8mg/L and 10mg/L respectively. Specificity was 62.8% (95%CI 57.8–67.6%) and 66.6% (95%CI 61.1–70.7) respectively. Area-under-the-curve using Receiver Operating Characteristic analysis was 0.77 (95%CI 0.74–0.81). Threshold analysis showed optimal CRP cutoff-points were higher in HIV+ than HIV- participants. An algorithm in which CRP triage was followed by confirmatory Xpert MTB/Rif testing achieved a sensitivity of 75.1% (95%CI 69.0–80.4%) whilst decreasing Xpert usage by 40.6%.

Discussion

CRP may not meet the challenge of a catch-all TB triage test. However, it shows promise in HIV+ individuals. Further research is required in a prospective study using point-of-care platforms to further evaluate its capabilities.

Introduction

New diagnostic approaches are urgently needed to reduce tuberculosis (TB) incidence and meet WHO End TB targets [1]. The Xpert MTB/Rif assay (hereafter referred to as ‘Xpert’) is more sensitive than smear microscopy, faster than traditional culture methods and has been rolled out in many settings throughout the world [2, 3]. However, placement of the instrument at primary care level in low resource settings where the majority of individuals with TB first access care is restricted by its infrastructure requirements and cost [46]. Efforts are being made to develop Xpert platforms suited to the available infrastructure, but the cost of testing all people undergoing evaluation for presumed-TB remains prohibitive.

Currently, two weeks of cough is widely used as a prompt to initiate diagnostic testing for pulmonary TB (PTB). However, TB prevalence amongst these individuals is low [7]. Interest has therefore grown in the usage of a two-stage diagnostic algorithm in which a highly sensitive first triage test, applied to patients with symptoms of active pulmonary TB and deployed at the peripheral reaches of the healthcare system, effectively captures most subjects at higher likelihood of having TB. This triage test should also have sufficient specificity to enable ‘rule-out’ from the expensive second stage of testing for those at very low likelihood, creating significant resource savings especially in medium prevalence settings. The target product profile (TPP) suggested by the World Health Organization (WHO) for such a triage test specifies a minimum sensitivity of 90% and specificity of 70% against the confirmatory test for PTB [8].

C-reactive protein (CRP) is an attractive candidate as a triage test for TB. Many point-of-care (POC) CRP tests are commercially available with some costing less than US$1 [9], and this blood-based biomarker has shown promise in the diagnosis of subjects undergoing evaluation for TB. A recent meta-analysis has shown that CRP has a high sensitivity (93%) and moderate specificity (60%) amongst outpatients with PTB symptoms in high-burden settings, with data primarily coming from studies in people living with HIV [10]. Also, it has been shown to be an effective screening test for HIV+ patients and could reduce the number of Xpert tests required without comprising diagnostic yield over symptom-based screening [11, 12]. In contrast, the evaluation of the performance of CRP as a triage test has been less well-studied. A recent meta-analysis of diagnostic accuracy studies found CRP to perform with an overall sensitivity and specificity of 89% and 57% respectively for pulmonary TB, showing significant variation by geography, HIV status and clinical setting [13]. CRP was not deployed as a triage test in any of the included studies. However, several studies in HIV+ South African patients in which CRP has been used as a triage test demonstrated similar performance [14, 15]. To our knowledge no dedicated studies have done so in HIV- patients. Individuals who present to healthcare with symptoms suggestive of PTB are likely to have a greater burden of pyogenic infections and non-TB inflammatory conditions than populations being screened, which may negatively affect specificity compared with studies evaluating CRP in this context [10].

Although some studies have assessed the diagnostic accuracy of CRP in TB, no study has yet assessed the suitability of CRP for use as a triage test for individuals undergoing evaluation for presumed TB independent of HIV status in representative high endemic countries. In this study, we aimed to assess the diagnostic accuracy of quantitative laboratory-based CRP as a triage test for the detection of active TB in bio-banked serum samples taken from individuals with presumed TB presenting to secondary care across five high-burden TB countries.

Materials and methods

Ethics statement

All study-related activities were approved by the Human Research Ethics Committees (HREC) of the partners in-countries. These were: University of Cape Town, South Africa; Universidad Peruana Cayetano Heredia, Peru; Pham Ngoc Thach Hospital, Vietnam; Calmette Hospital, Cambodia; National Centre for Tuberculosis and Lung Diseases, Georgia.

Study population

For this retrospective nested case-control study, serum samples were selected from FIND’s biorepository. These samples were previously collected from adults presenting at district hospitals in South Africa and referral hospitals in Cambodia, Peru, Georgia and Vietnam between 2007 and 2017. Participants were included if age was greater to or equal to 18 years, if they were able to give informed consent and had presented with symptoms suggestive of pulmonary TB. Symptoms were specified as current cough, haemoptysis, recent weight loss, night sweats and fever. To be included in the analysis all participants had to provide both a blood sample and at least 2 sputum samples at enrolment prior to initiation of anti-tuberculous therapy. Blood samples were preserved in temperature-controlled freezers at -80°C from collection until CRP testing. Participants were excluded if they had received anti-tuberculous therapy within 60 days prior to enrolment.

The study followed a nested case-control design. Cases were individuals with TB and controls were individuals presenting with symptoms that warranted investigation and for whom sputum testing proved negative for M.tb. The cases and controls were chosen to reflect the geographic distribution, age and sex of participants across the entire cohort and were weighted to have at least 20% smear-negative results among culture-positive TB patients at each site and at least 25% of HIV+ patients overall. Cases and controls were matched by HIV status. All study-related activities were approved by the Human Research Ethics Committees of the partners in-countries. Written informed consent was obtained from patients, as per study protocol (protocol and consent form available upon request). Study participation did not affect standard of care. Reporting followed STARD guidelines [16].

Index test

Serum CRP levels were measured using the Multigent CRP Vario assay (a latex immunoassay) on Abbott Architect C8000 at Quest laboratories. For testing, in brief, the stored serum was thawed and then processed and interpreted, following the manufacturer’s protocol.

Reference testing

All sputum samples were processed using standardized protocols in centralized accredited laboratories of the partner institutions. The testing flow for the samples is available in the study protocol (S1 File). Testing was performed on all available sputum specimens and included smear fluorescence microscopy with Auramine staining, MGIT liquid culture (Becton Dickinson, Franklin Lakes, USA) and solid culture on Löwenstein-Jensen (LJ) medium. The presence of M.tb complex in solid and liquid culture was confirmed with MPT64 antigen detection and/or the MTBDRplus line probe assays (both Hain Lifesciences, Nehren, Germany). Xpert MTB/Rif (‘Xpert’, Cepheid, Sunnyvale, USA) was performed on sputum samples from 2011 onwards when it was available, following the manufacturer’s protocol. The operators of the index were blinded to the results of the reference standard.

Definitions

A CRP cutoff-point of ≥8mg/L or ≥10mg/L was predefined as a positive triage test. These values were chosen based on previous work [10, 11]. To obtain the best estimate of performance of CRP, a comparison was made against a microbiological reference standard (MRS). For this MRS, participants were assigned to two diagnostic categories using a combination of laboratory and clinical findings. Cases (TBpos) included patients with any culture positive for M.tb. Controls (TBneg) were patients with negative microscopy, cultures and Xpert tests (when available) for M.tb (and at least one non-contaminated culture result), who were not started on anti-TB treatment and were alive and improved at 8-weeks follow-up. Participants who did not fulfil these criteria were excluded from selection into the study. In order to evaluate CRP against the most likely confirmatory test available in low-and middle-income country (LMIC) settings, participants were classified based on a single sputum Xpert result (Xpert reference standard; XRS). Participants with an indeterminate Xpert result were excluded from the XRS. All classification of participants was done prior to performing the index test.

Sample size calculation

391 cases and 374 controls were sufficient to achieve a total 95% confidence interval (95%CI) width of <10% based on the targeted performances of the index test (a sensitivity of 90% and a specificity of 70% as per the minimum target product profile specified by the WHO). 212 HIV+ individuals were selected amongst these, 111 cases and 101 controls, achieving a total 95%CI width of 11% for sensitivity and 23% for specificity for HIV+ participants based on the same targeted test performance.

Statistics

For descriptive statistics, dichotomous variables were reported as numbers with percentages whilst continuous variables either as median with an inter-quartile range (IQR) if non-parametric or mean with a standard deviation (SD) if normally-distributed. The primary outcome was the overall estimates of sensitivity and specificity of CRP in the diagnosis of TB based on the MRS. Secondarily, we compared CRP against the Xpert reference standard. Results were reported for pre-defined CRP cutoff-points as point estimates with 95%CI calculated using Wilson’s method [17]. An analysis of the following sub-groups was prespecified: smear status, HIV status, number of symptoms (categorized as < = 1, 2–3 or > 3). Analyses by region and gender were post-hoc based-on data trends. Receiver Operating Curve (ROC) analysis was undertaken to explore the performance of alternative CRP thresholds. Post-hoc, optimal cutoff-points were selected using a manual data inspection approach. The total combined sensitivity and specificity deficit relative to the minimum TPP was calculated for all cutoff-points along the ROC curve. The optimal cutoff-point was defined as that with the lowest combined deficit. A log-scale linear multivariable regression model of the effect of a pre-defined selection of variables on CRP concentration was generated. Variables were selected for the multivariable model if the p-value was less than 0.1 in univariate analysis (see Supporting Information). Akaike information criterion (AIC) was used to build the best model. Log transformation of CRP concentration was used to achieve normal distribution of residuals. A complete case analysis was used. The relationship between CRP concentration and time-to-sputum culture positivity was explored using LOWESS and Pearson’s correlation coefficient. All analyses were performed using STATA 15 (StataCorp, USA). An analysis plan was predefined and is available upon request.

Results

Participants

Of the 765 participants included in the study, 307 (40.1%) were female and the median age was 36 (IQR 27–47) (Table 1). Xpert results were available for 527/765 (68.9%) participants. Participants were drawn from five countries, with the majority being from Peru, South Africa and Vietnam (87.6% of the total). HIV status was available for 96.7% of participants, of which 28.8% were seropositive. HIV seropositivity differed markedly between study sites, ranging from 0% (Georgia and Cambodia) to 63.7% (South Africa). CD4 counts were available for 44.6% of HIV+ participants, with a median count of 202 (IQR 76–444).

Table 1. Participant characteristics.

Participant Characteristics N (total participants = 765)
TBpos (n = 391) TBneg (n = 374)
Age Median (IQR) 33 (25–43) 39 (31–54)
Sex Female (%) 125 (32.0) 182 (48.7)
Male (%) 266 (68.0) 192 (51.3)
Site of Study Cambodia (%) 30 (7.7) 18 (4.8)
Georgia (%) 30 (7.7) 17 (4.5)
Peru (%) 125 (32.0) 138 (36.9)
South Africa (%) 70 (17.9) 70 (18.7)
Viet Nam (%) 136 (34.8) 131 (35.0)
Smear status S+C+ (% of TB cases) 289 (73.9)
S-C+ (% of TB cases) 102 (26.1)
HIV status Positive (% of participants with known HIV status) 111 (28.8) 102 (28.7)
Negative (% of participants with known HIV status) 274 (71.2) 253 (71.3)
Unknown (% of total) 6 (1.5) 19 (5.1)
CD4 Count <200 (% with CD4 count) 29 (61.7) 18 (37.5)
> = 200 (% with CD4 count) 18 (38.3) 30 (62.5)
Unknown (% of HIV+ participants) 64 (57.7) 54 (52.9)
Median CD4 count (IQR) 128 (71–357) 279 (106–515)
History of BCG Positive history of vaccination or scar present (%) 209 (53.5) 206 (55.1)
Negative history of vaccination (%) 78 (19.9) 83 (22.2)
Unknown history of vaccination and scar indeterminate (%) 74 (18.9) 68 (18.2)
Not obtained (%) 30 (7.7) 17 (4.5)
Prior history of TB Positive (%) 75 (19.2) 96 (25.7)
Negative (%) 312 (79.8) 275 (73.5)
Unknown (%) 4 (1.0) 3 (0.8)
QuantiFERON result Positive (% with result) 72 (73.5) 0 (0)
Negative (% with result) 20 (20.4) 120 (85.1)
Indeterminate (% with result) 6 (6.1) 21 (14.9)
Not obtained (% total participants) 293 (74.9) 233 (62.3)
Number of symptoms at presentation 1 (%) 41 (10) 118 (32)
2–3 (%) 195 (50) 183 (49)
4+ (%) 155 (40) 73 (19)
Symptoms at presentation Cough (%) 387 (99) 363 (97)
Haemoptysis (%) 88 (23) 37 (10)
Fever (%) 237 (61) 169 (45)
Night Sweats (%) 227 (58) 144 (39)
Recent weight loss (%) 142 (36) 164 (44)
GeneXpert MTB/Rif status (n = 527) Xpert+ (%) 183 (83) 0 (0)
Xpert- (%) 38 (17) 306 (100)

The vast majority of patients presented with cough. Night sweats, fever and haemoptysis were seen more frequently in TBpos participants, and frequently co-existed (S2 Fig). Thirty percent of participants presented with 4 or more symptoms, two-thirds of whom had TB.

Distribution of CRP

CRP varied significantly by TB status (Fig 1): the median CRP for TBpos participants was 47.1mg/L (IQR 12.3–93.0mg/L), and 4.25mg/L (IQR 1.3–19.1mg/L) for TBneg participants with a mean difference 41.3mg/L (95%CI 33.4–49.2mg/L). Similarly, CRP results were significantly higher in smear-positive TBpos participants compared to smear-negatives (median of 55.3mg/L (IQR 20.5–106.3mg/L) vs 18.7mg/L (IQR 2.2–59.3mg/L) p<0.001). Furthermore, median CRP concentration increased with the number of symptoms participants reported at presentation and was higher in HIV positive participants than HIV negative. Higher CRP concentrations were associated with shorter time to culture positivity, a proxy of mycobacterial load (S3 Fig).

Fig 1. The distribution of CRP amongst all study participants (n = 765).

Fig 1

A) by TB and smear status; B) by TB status and number of symptoms at presentation; C) by TB and HIV status. Lavender line demarcates a CRP threshold of 8mg/L–subjects below this line would not go forward for further testing in a triage-based algorithm. Gold lines demarcate median and inter-quartile range. TBneg = tuberculosis negative by MRS. TBpos = tuberculosis positive by MRS. HIV = human immunodeficiency virus. CRP = C-reactive protein.

The results of the multivariable regression are shown in Table 2. As expected from the CRP distribution shown in Fig 1, positive TB status and a positive smear microscopy result, as well as an increased number of symptoms at presentation, remained strongly associated with higher CRP results. Higher CRP results were also seen in HIV+ (p<0.001).

Table 2. Log-scale linear regression model of the effect of shown variables on CRP concentration.

Variable Log median fold-change in CRP (from reference) 95% Conf. Interval P value
Lower Upper
TB status TBpos 2.12 1.51 2.94 <0.001
TBneg Reference
Smear microscopy result Smear+ 2.60 1.85 3.67 <0.001
Smear- Reference
HIV status HIV+ 2.06 1.62 2.61 <0.001
HIV- Reference
Number of symptoms at presentation 4+ 4.46 3.22 6.18 <0.001
2–3 2.09 1.57 2.78 <0.001
1 Reference
n = 735 Prob > F: <0.0001 AIC = 2661 R-squared = 0.3817

Receiver Operating Characteristic (ROC) curve analysis

Fig 2A shows the ROC curve for data using the MRS. Area under the curve (AUC) equalled 0.77 (95%CI 0.74–0.81). CRP did not meet TPP at any cutoff-point. The CRP cutoff-point with the closest diagnostic performance to TPP was 12mg/L (sensitivity 76.0% (95%CI 71.5–79.9%), specificity 69.5% (95%CI 64.7–74.0%)). Fig 2B shows the ROC curve using the XRS. AUC equalled 0.83 (95%CI 0.79–0.87). However, CRP still did not meet the TPP at any cutoff-point using the XRS. A cutoff of 18mg/L gave a diagnostic performance closest to the TPP (sensitivity 84.7% (95%CI 78.8–89.2%), specificity 69.5% (95%CI 64.4–74.1%)). The effect of varying the CRP cutoff-point on diagnostic performance against the MRS and XRS is shown in the S3 and S5 Tables.

Fig 2. Receiver Operating Characteristic (ROC) curves demonstrating the performance of CRP in the diagnosis of PTB.

Fig 2

A) ROC curve against culture; B) ROC curve against Xpert MTB/Rif. The shaded orange area represents the sensitivity and specificity combinations that meet at least the minimum target of one of the Target Product Profile characteristics. Minimum (Sensitivity 90% Specificity 70%) and Optimal (Sensitivity 95% Specificity 80%) Target Product Profile targets are plotted. Pre-defined CRP cutoff-points are plotted as red circles and yellow squares with optimal CRP cutoff-points plotted as green diamonds; all have estimated performance stated. AUC = Area Under Curve; TPP = Target Product Profile; PTB = Pulmonary tuberculosis.

Sensitivity and specificity analysis

At a cutoff-point of 8mg/L, CRP concentrations were elevated in 451/765 participants including 312/391 participants with culture-confirmed TB. This corresponded to a sensitivity of 79.8% (95%CI 75.5–83.5). Using a cutoff-point of 10mg/L CRP concentrations were found to be elevated in 431/765 participants, including 304 with culture-confirmed TB, corresponding to a sensitivity of 77.7% (95%CI 73.4–81.6). The corresponding specificity was 62.8% (95%CI 57.8–67.6) using an 8mg/L cutoff-point and 66.6% (95%CI 61.1–70.7) using 10mg/L (Table 3). Against the XRS, CRP showed an overall sensitivity of 90.7% (95%CI 85.6–94.1) and a specificity of 57.3% (95%CI 52.0–62.4) at the 8mg/L cutoff-point (S2 Table). At a 10mg/L cutoff-point this was 89.6% (95%CI 84.4–93.3) and 60.8% (95%CI 55.5–65.8) respectively.

Table 3. Sensitivity and specificity of CRP in the diagnosis of culture-positive tuberculosis.

Variable (n/N) CRP ≥8mg/L CRP ≥10mg/L AUC (95%CI)
Sensitivity (95%CI) Specificity (95%CI) Sensitivity (95%CI) Specificity (95%CI)
Overall (391/765) 79.8 (75.5–83.5) 62.8 (57.8–67.6) 77.7 (73.4–81.6) 66.0 (61.1–70.7) 0.77 (0.74–0.81)
Smear Status
(289/663) Smear + (Culture+) 86.2 (81.7–89.7) 62.8 (57.8–67.6) 84.4 (79.8–88.2) 66.0 (61.1–70.7) 0.82 (0.79–0.85)
(102/476) Smear—(Culture+) 61.8 (52.1–70.6) 62.8 (57.8–67.6) 58.8 (49.1–67.9) 66.0 (61.1–70.7) 0.63 (0.57–0.70)
HIV status
(111/213) Positive 93.7 (87.6–96.9) 49.0 (39.5–58.6) 91.9 (85.3–95.7) 52.9 (43.3–62.3) 0.83 (0.78–0.89)
(274/527) Negative 74.8 (69.4–79.6) 68.0 (62.0–73.4) 72.6 (67.1–77.6) 71.1 (65.3–76.4) 0.76 (0.72–0.81)
Number of presenting symptoms
(41/159) 1 symptom 43.9 (29.9–59.0) 78.8 (70.6–85.2) 34.1 (21.6–49.5) 81.4 (73.4–87.4) 0.61 (0.51–0.71)
(195/378) 2–3 symptom 76.4 (70.0–81.1) 62.8 (55.6–69.5) 75.4 (68.9–80.9) 66.1 (59.0–72.6) 0.76 (0.71–0.81)
(155/228) 4+ symptom 93.5 (88.5–96.5) 37.0 (26.8–48.5) 92.5 (87.0–95.5) 41.1 (30.5–52.6) 0.77 (0.70–0.84)

N = total number of cases and controls, n = number of TBpos cases as defined by the MRS. Smear-positive (n = 289) and smear-negative (n = 102) participants were each assessed against all TBneg (n = 374) participants, giving a total of 663 and 476 included participants respectively.

Subgroup analyses

Diagnostic performance against the MRS was analysed for pre-specified sub-groups (Table 3). CRP became more sensitive but less specific as the number of symptoms at presentation increased. It showed greater sensitivity for smear-positive over smear-negative TB (86.2% (95%CI 81.7–89.7%) vs. 61.8% (95%CI 52.1–70.6%) at a cutoff-point of 8mg/L). CRP was highly sensitive for TB in HIV+ participants, showing a sensitivity of 93.7% (95%CI 87.6–96.9%) and 91.9% (95%CI 85.3–95.7%) at cutoff-points of 8mg/L and 10mg/L respectively (Table 3). However, specificity was suboptimal at 49.0% (95%CI 39.5–58.6%) and 52.9% (95%CI 43.3–62.3%) respectively. By contrast, in HIV- participants CRP was less sensitive but was markedly more specific, with a sensitivity of 74.8% (95%CI 69.4–79.6%) and specificity of 68.0% (95%CI 62–73.4%) at a cutoff-point of 8mg/L, and 72.6% (95%CI 67.1–77.6%) and 71.1% (95%CI 65.3–76.4%) at a cutoff-point of 10mg/L respectively.

The optimal cutoff-point was markedly different in HIV+ and HIV- participants, although the difference in the AUC between these two populations was not significant. For HIV- participants a CRP cutoff-point of 6mg/L gave a sensitivity of 78.5% (95%CI 73.2–82.9%) and a specificity of 64.4% (95%CI 58.4–70.1%), whilst in HIV+ participants a cutoff-point of 22.7mg/L gave a sensitivity of 85.6% (95%CI 77.9–90.9%) and a specificity of 69.6% (95%CI 60.1–77.7%)). Sub-analyses by country of origin are reported in the supporting information, along with analyses using the XRS (S2 and S4 Tables). Sensitivity and specificity showed a large degree of heterogeneity between study sites, although the number of participants at some sites were small.

CRP triage algorithm

A realistic implementation scenario for CRP triage testing would involve an algorithm in which a positive CRP triage result led to a confirmatory Xpert MTB/Rif test. Given such a scenario, the number of required confirmatory tests would be decreased by 40.6% using a CRP cutoff-point of 8mg/L. However, 55/221 TBpos participants with determinate Xpert results (24.9%) would be missed. By contrast, if Xpert MTB/Rif were implemented for all without CRP triage, 38 (17.2%) participants would be missed. Further details are provided in S6 Table.

Discussion

Currently, CRP is the only available inexpensive POC-compatible investigation with the potential to be a suitable triage test for tuberculosis. This study for the first time provides an assessment of the performance of a quantitative laboratory-based CRP test for the diagnosis of presumed TB in patients presenting across five high-burden TB countries independent of HIV status [14, 15]. Whilst the specificity against culture-defined TB was close to 70%, sensitivity was sub-optimal at 77.7% at a cutoff-point of 10mg/L. For Xpert-defined TB CRP sensitivity was 90.7% and thus met the sensitivity as defined in WHO Triage-TPP but fell 13 percentage points short of the specificity of the TPP at 8mg/L. Cutoff-points of 8mg/L and 10mg/L were selected on the basis of previous work [10, 11] but the optimal cutoff-point seems to occur at higher CRP concentrations. Considering the most likely implementation scenario with Xpert as a confirmatory test (as indicated in the TPP), 18mg/L would be the best cutoff-point in our dataset for a triage test. Whilst the use of CRP as a triage test would reduce usage of confirmatory Xpert testing by about 40% at a cutoff-point of 8mg/L, the results suggest it would lead to approximately a quarter of culture-positive cases being missed, 8 percentage points more in absolute terms than with an Xpert-for-all strategy.

CRP concentrations tended to be higher in individuals with more symptoms at presentation and those with smear-positive disease, and it performed with greater sensitivity in these patient groups. In addition, higher CRP at presentation was associated with a shorter time to culture positivity, confirming previous findings [11]. As smear-positive TB cases likely contribute as much as 80% of total disease transmission [18], and as an effective POC triage test would likely lead to the consideration of TB in more patients, it is possible that despite suboptimal diagnostic performance, CRP could still contribute to the reduction of TB disease burden compared with current practice and to the rational use of Xpert cartridges. However, the suboptimal specificity might make the implementation of the test in an Xpert-algorithm challenging, especially in low prevalence settings. An algorithm that considers clinical risk factors in addition, or sequential testing [19], could be considered.

An algorithmic approach using CRP to triage individuals to confirmatory Xpert testing shows promise. Over half of culture-positive cases that would have been missed by this algorithmic approach were missed Xpert diagnoses, not a result of CRP test performance (S1 Fig). Of note, Xpert MTB/Rif was 82.8% sensitive for culture-positive TB in this study, lower than reported in meta-analyses [20, 21]. Xpert Ultra is likely to become the predominant TB test on the Xpert platform and is shown to have improved sensitivity over Xpert MTB/Rif [22]. The transition to Ultra could lead to algorithm sensitivity gains, although would likely result in some decrease in specificity. Reducing Xpert cartridge consumption using an algorithmic approach would have important financial implications in low-income settings. Furthermore, in conjunction with the advent of smaller, more portable and robust Xpert platforms designed for use in LMIC community settings [23, 24], POC CRP testing in an algorithmic approach may provide an opportunity to increase test coverage at the location that the majority of TB patients initially access care [4], and could increase diagnostic pick-up. However, this study used laboratory-based methods to quantify CRP and the performance of any algorithm would need to be confirmed using POC-testing platforms to assess suitability for the field. Performance of field-based POC clinical tests vary widely, and so this would not be an insignificant translational barrier.

Although CRP did not meet the TPP overall, use of alternate cutoff-points based on HIV sero-status allowed for improved performance in HIV+ participants. This suggests that CRP at one defined cutoff-point might not meet the challenge of being a catch-all triage test for the global TB epidemic, but different cutoff-points might be necessary in high and low HIV-prevalence settings. Whilst CRP had excellent sensitivity in HIV+ participants at the pre-defined cutoff-points, specificity was far lower than in HIV- participants. The latter is likely to reflect one or both of the increased prevalence of infective pathologies or the baseline CRP found in HIV+ patients [2528]. Using a higher CRP cutoff-point for HIV+ participants improved specificity, almost meeting TPP using the XRS. Recent studies have suggested CRP has a role in TB screening of HIV+ individuals [11, 12]. This study supports previous work suggesting it could also have a role in triaging HIV+ patients undergoing evaluation for presumed TB, with CRP cutoff-points adjusted accordingly [14, 15]. Indeed, the WHO advocates HIV testing whenever TB is presumed [29] and mandatory POC HIV testing to inform CRP cutoff-point adjustment could assist in further operationalising HIV screening within TB programs. Despite concerns that the diagnostic specificity in HIV- participants would be compromised by the burden of alternative pyogenic and inflammatory conditions, the specificity of CRP for culture-positive TB in HIV negative participants was satisfactory. The suboptimal sensitivity seen in this patient group may be due to low levels of systemic immune activation at lower bacillary burdens, as suggested by the poor performance of CRP in smear negative disease.

CRP performance varied by study site (in a post-hoc analysis reported in the supporting information), tending to perform better outside south-east Asia. Previous data assessing the role of CRP in the diagnosis of TB have largely been from sub-Saharan Africa [10]. CRP has been found to better distinguish bacterial from viral illness in febrile patients in Asia compared to those from equatorial Africa. This is likely because of the burden of malaria and parasitic co-infection in the latter [30, 31]. However, it is likely the burden of TB/bacterial co-infection is higher in South-East Asia [32], adversely impacting the diagnostic performance of CRP in these settings. Furthermore, previous work by Brown et al. [33] suggests there may be intrinsic differences in host CRP response to TB between different ethnicities and mycobacterial strain type, raising the prospect of adjustment of CRP cutoff-points by geography in order to improve diagnostic performance. More work is required to better understand these observations.

This study has a number of strengths. It is the first study to explore the utility of CRP as a triage test and reports the diagnostic characteristics of CRP at a range of cutoff-points. It used participants from a range of study locations and with a range of mycobacterial burdens, and in doing so is largely representative of the global TB epidemic. The use of a laboratory-based analyser allowed assessment of the sensitivity and specificity of CRP without concerns introduced by the accuracy of POC platforms.

However, it also has some limitations. Smear negative participants made up 26% of TB cases in this study compared to approximately 50% generally reported in clinical practice [34]. CRP performed less well in these participants, and so overall test performance in a prospective setting may be worse than reported here. Facilities enabling liquid sputum culture are often not available at peripheral health centres in high-burden countries and so its use as a confirmatory test may be limited in these settings at present. However, Xpert could act as such a test; it is being rapidly scaled-up in high burden countries and endorsed by the WHO as a follow-on test for smear-negative PTB [35]. Whilst this study used laboratory-based CRP measurements, triage testing in peripheral health centres would require a POC platform. Performance of such platforms vary widely and would require further evaluation against a laboratory standard. Furthermore, the performance of the proposed algorithm would need to be determined prospectively using POC platforms in a population with more co-morbidities before any implementation of CRP for triage could occur.

CRP may not be the catch-all triage test that the global TB epidemic requires. However, it shows promise in certain patient groups: this study suggests a possible role in HIV+ individuals undergoing evaluation for presumed TB. Further research is required in a prospective study using POC-platforms to more thoroughly evaluate its capabilities in the field. Should these studies prove its utility, and in conjunction with the ongoing development of community-based Xpert platforms, it raises the possibility of increasing access to TB testing in resource-poor settings.

Supporting information

S1 Fig. Participant flow diagram for CRP cutoff-point of 8mg/L.

(TIF)

S2 Fig. Venn diagram showing distribution of TB-related symptoms in TBpos participants on presentation to health care (n = 391).

Numbers represent number of participants presenting with the indicated symptom complex. Total TBpos participants presenting with night sweats n = 227, with haemoptysis n = 88, with recent weight loss n = 269 and with none of the above n = 61.

(TIF)

S3 Fig. Scatterplot of CRP concentration against time to sputum liquid culture positivity for TBpos participants.

Blue dots represent individual CRP data points, red line demonstrates line of best fit and green demonstrates LOWESS locally weighted smoothing. As CRP concentration decreased linearly with increased time to sputum culture positivity, Pearson’s correlation was applied and found to be significant with a coefficient of -0.234 (p = 0.003).

(TIF)

S4 Fig

ROC curve analysis of CRP performance in the diagnosis of tuberculosis using A) the MRS and B) the XRS, by HIV status. The shaded orange area represents the sensitivity and specificity combinations that meet at least the minimum target of one of the Target Product Profile characteristics. Minimum (Sens 90% Spec 70%) and Optimal (Sens 95% Spec 80%) Target Product Profile targets are plotted as a black diamond and black triangle respectively. Pre-defined CRP cutoff-points are plotted as red circles and yellow squares with optimal CRP cutoff-points plotted as green diamonds. In A) optimal CRP cutoff-points occurred at 23mg/L for HIV+ participants and 6mg/L for HIV- participants. In B), these cutoff-points were 29mg/L (Sensitivity 90.3% Specificity 68.3%) and 11mg/L (Sensitivity 86.0% and Specificity 68.8%) respectively. AUC = Area Under Curve; ROC = Receiver Operating Characteristic; CRP = C-reactive protein; MRS = Microbiological reference standard; XRS+ Xpert MTB/Rif reference standard.

(TIF)

S5 Fig

ROC curve analysis of CRP performance in the diagnosis of tuberculosis against the MRS by A) Age of serum sample at time of CRP analysis and B) without Vietnamese sera older than 3,000 days. Variation by study site prompted post-hoc exploratory analysis, which revealed CRP diagnostic performance was significantly worse in pre-2011 samples taken in Viet Nam compared to those taken later. A significant negative correlation between CRP levels and serum sample age was seen in Vietnamese TBpos participants, without a similar correlation being observed in TBneg samples. Optimal sensitivity and specificity against MRS excluding this pre-2011 data (B) was 84.5% (95%CI 79.7–88.3) and 69.5% (95%CI 64.5–74.0) respectively at 12mg/L cutoff-point. This also explains much of the reported difference in CRP performance between the XRS and the MRS, as the pre-2011 Vietnamese participants did not receive Xpert testing. The shaded orange area represents the sensitivity and specificity combinations that meet at least the minimum target of one of the Target Product Profile characteristics. Minimum (Sens 90% Spec 70%) and Optimal (Sens 95% Spec 80%) Target Product Profile targets are plotted as a black diamond and a black triangle respectively. Pre-defined CRP cutoff-points are plotted as red circles (8mg/L) and yellow squares (10mg/L) with optimal CRP cutoff-points plotted as green diamonds. AUC = Area Under Curve; ROC = Receiver Operating Characteristic; CRP = C-reactive protein; MRS = Microbiological Reference Standard.

(TIF)

S1 Table. Characteristics of participants who received Xpert MTB/Rif testing.

(PDF)

S2 Table. Sensitivity and specificity of CRP against the XRS by study site, smear status, HIV status and number of symptoms at presentation.

N = total number of cases and controls, n = number of TBpos cases as defined by the XRS. Smear-positive (n = 289) and smear-negative (n = 102) participants were each assessed against all TBneg (n = 374) participants, giving a total of 663 and 476 included participants respectively.

(PDF)

S3 Table. Threshold analysis of the performance of CRP against the XRS using ROC curve data, overall and by HIV status.

(PDF)

S4 Table. Sensitivity and specificity of CRP against the MRS by study site. N = total number of cases and controls, n = number of TBpos cases as defined by the MRS

(PDF)

S5 Table. Threshold analysis of the performance of CRP against the MRS using ROC curve data, overall and by HIV status.

(PDF)

S6 Table. The diagnostic accuracy of CRP triage against the MRS at varying CRP triage thresholds.

In this algorithm, a positive CRP triage test above the stated threshold would trigger patients to move forward to confirmatory testing by the stated method. The performance of chest X-ray (CXR) as a triage test was assessed for comparison. A CXR was defined as positive for TB if the radiographic appearance was judged to be consistent with typical or atypical TB. The sensitivity and specificity of a single Xpert MTB/Rif against the MRS is also presented.

(PDF)

S7 Table. Univariate linear regression analysis of the relationship between CRP and selected variables.

All variables with a p value <0.1 were considered for inclusion into multivariable analysis. Akaike Information Criterion values were then used to build the best model. CD4 count was excluded from the multivariable model despite meeting significance as only 95 study participants had recorded values. AIC was not reported for CD4 count as sample size differed from other variables.

(PDF)

S1 File. Study protocol.

(DOCX)

S1 Dataset

(XLSX)

Acknowledgments

The authors thank Anna Mantsoki, Audrey Albertini, Marta Fernandez Suarez and Ranald Sutherland for helping with the conceptualization of this work, the participants who provided the samples and the clinical and laboratory teams at the partner sites for their efforts in performing the study.

Data Availability

All relevant data are within the manuscript and its Supporting Information Files.

Funding Statement

This work was funded by the UK Department for International Development (DFID) grant number 300341-102 (https://www.gov.uk/government/organisations/department-for-international-development), Dutch Ministry of Foreign Affairs grant number PDP15CH14 (https://www.government.nl/ministries/ministry-of-foreign-affairs), Australian Department of Foreign Affairs and Trade (DFAT) grant number 70957 (https://www.dfat.gov.au/). CD received all awarded funding. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

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Decision Letter 0

Frederick Quinn

5 Aug 2020

PONE-D-20-19334

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

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Reviewer #1: This study is a retrospective matched case-control study of the diagnostic accuracy of C-reactive protein for the diagnosis of pulmonary tuberculosis. The strengths include the size and diversity of the population tested. However I have concerns that several of the analyses are inappropriate for the case-control design of this study.

Major points

Lines 110-119: How were controls selected? Were controls unmatched? From line 159 it seems they were matched on HIV status.

Lines 175-177 - I don't think it's appropriate to conduct a linear regression on case-control data without correcting for selection bias associated with oversampling of cases. For example, see doi: 10.1093/biostatistics/kxt041

Additionally, with a data-driven variable selection procedure for your model, please also include stability / sensitivity analyses. See doi:10.1002/bimj.201700067

Lines 171-172: Similarly, the ROC analysis should be adjusted for the case-control design. See doi: 10.1016/j.acra.2013.03.004, and doi: 10.1373/clinchem.2012.186007

Minor points

line 29 "no study has assessed its suitability as a triage test." Similarly stated on line 353. What about doi: 10.1097/QAD.0000000000001902, and doi: 10.5588/ijtld.13.0519 ?

Lines 83-88 citation?

Line 165 Parametric is a general term for any probability distribution. Do you mean normally distributed? How was this determined?

Table 1: Please include Xpert status for cases

Line 361 "50% generally reported in clinical practice" This needs a citation. Maybe in HIV + cohorts, but generally?

Reviewer #2: The manuscript is well written, the study design and the analysis are clear and the analysis has considered a range of interesting secondary questions; I have a few comments on the analysis and discussion.

Your paper makes it clear that you are concerned with CRP in conjunction with another test, which you expect will usually be Xpert MTB/Rif (but could be culture). So in referring to the TPP specified minimum sensitivity and specificity, should you not be looking at the figures for the composite of CRP followed (if threshold is met) by Xpert, and not CRP alone? If one can choose the appropriate CRP threshold to obtain high enough sensitivity, and then follow it with Xpert, why should we demand high specificity of CRP alone? Your table S6 notes that with Xpert as the second part of this composite CRP-Xpert testing one sees 100% specificity.

You report that CRP fails to meet the TPP specified requirement of at least 70% specificity but in this paper you are not suggesting CRP alone. Even a CRP specificity less than 70% could result in some reduction of Xpert testing (the only benefit of high CRP specificity in your composite testing model seems to be a health system benefit - as opposed to improved diagnostic yield which is not diminished by the low specificity of CRP, when used with Xpert or culture).

Line 37-38: The abstract states that "The PTB reference standard was a contemporaneously collected single sputum MGIT culture result."

Line 104-106: Later in Materials and Methods it is stated that "To be included in the analysis all participants had to provide both a blood sample and at least 2 sputum samples at enrolment prior to initiation of anti-tuberculous therapy."

Is the reference standard for diagnosis of TB one or two MGIT TB cultures? If two, are they performed on different specimens?

Line 319-20: "However, the suboptimal specificity might make the implementation of the test in an Xpert-algorithms impossible." The word 'algorithm' should be singular (or the word 'an' should be removed if the plural is intended).

In your discussion of the sensitivity of CRP among HIV+ and HIV- persons with TB you note the use of different threshold values for HIV+ persons, or the possible addition of clinical features to an algorithm. No mention is made of the possibility of more than one CRP measurement per patient during the diagnostic evaluation period. Your analysis and others make it clear that CRP is more likely to be elevated when there are clinical (eg., fever) and pathological (eg., hemoptysis, indicative of cavitation) features of intense inflammation, or its sequelae. It is likely that symptoms become more obvious the longer one has untreated TB, but sequential changes in CRP among persons suspected of having TB have not, as far as I am aware, been examined. Work by Stephen Lawn and others has looked at sequential CRP in response to TB treatment which may offer a diagnostic confirmation when a fall in CRP is observed.

Reviewer #3: This is a well written manuscript reporting the diagnostic accuracy of CRP as a TB triage test among patients with at least 1 TB symptom. The strengths of this manuscript include: 1) well-characterized cohorts, 2) geographic diversity (5 TB endemic countries) and 3) robust microbiologic and combined micro/clinical reference standards. The authors found that among patients with any TB symptom, CRP did not meet min TPP criteria for TB triage testing (insufficient sensitivity and specificity) at 8 or 10 mg/L. However, my main concern with this conclusion is that TB triage testing would not be applied to individuals with any TB symptom, unless they were at high risk for TB (e.g., HIV-positive). For everyone else, TB triage testing would be applied to patients with cough ≥2 weeks, however CRP diagnostic accuracy data for this group was not presented in this analysis and is likely to yield different diagnostic accuracy results. If symptom duration data is available, diagnostic accuracy of CRP should be assessed in the appropriate target populations for triage testing (cough ≥2 weeks if HIV-neg, any TB symptom in the past 1 month if HIV-pos).

Other major comments:

1. TB test nomenclature - Because the TB literature has used 'triage test' to refer to both primary screening tests (a test applied to an unselected group to identify individuals with suspected disease requiring confirmatory testing) as well as secondary screening tests which is the conventional definition (a test applied to individuals with suspected to disease with the goal of reducing the proportion requiring confirmatory testing), it would be helpful for the authors to be very explicit with how this manuscript defines triage test.

-- Abstract - please consider clarifying definition of triage test here. Currently, the first sentence could also be used to describe a primary screening test.

- Intro, 2nd paragraph - I'm not familiar with the term 'two-stage diagnostic algorithm,' used here and find it a bit confusing. Seems like 'two-stage diagnostic algorithm' doesn't include cough ≥2 weeks (screening test) but describes triage testing and confirmatory testing when applied to patients with cough ≥ 2 weeks. Please consider using conventional terminology/nomenclature and clearly defining these when more than 1 definition is commonly used.

2. Geographic differences in CRP diagnostic accuracy - CRP sensitivity was lower in Asian countries (Cambodia, Vietnam). It would be helpful to discuss this a bit more in the discussion. Marc Lipman (https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-016-1612-1) reported similar findings: Asian ethnicity was associated with lower median CRP levels among those with TB.

-- Tables S2 and S4 - why is CRP diagnostic accuracy for Vietnam so different in Table S2 and S4?

Minor comments:

Intro:

1. Page 4, line 78. Should change "PTB outpatients" to "outpatients with suspected TB (or outpatients with TB symptoms)."

2. Page 5, lines 82-83. Are prior studies limited when the reference cited is a meta-analysis that includes 6 studies that included HIV-negative patients? Also, please consider briefly (in 1 or 2 sentences) summarizing the results of this SR/MA that are relevant to this manuscript, which would provide readers with some context for the following 2 sentences.

3. Page 5, lines 83-85. This sentence suggests that CRP specificity will be lower among HIV-negative patients, is that the intent? I would assume the opposite because of lower rates of infection relative to HIV-positive patients.

4. Page 5, lines 85-86. "Individuals who present to healthcare with symptoms suggestive of PTB (therefore requiring triage instead of screening)..." With the current TB testing algorithm, patients with TB symptoms require confirmatory testing. I understand the point being made is that CRP triage testing can be expected to have reduced specificity relative to CRP screening but I think the comment in parentheses obscures this point.

5. Should the last reference in paragraph 3 (ref 13) be deleted here?

Methods:

1. Page 6, lines 99-101. Please provide more detail about the study population (e.g., outpatients, inpatients or both?)

2. Page 6, lines 101-104. Same as above major comment: If symptom duration data are available, please pull out cough ≥2 weeks and any 1/4 TB symptom in past month.

3. Last sentence of introduction mentions that a high sensitivity CRP (hsCRP) assay was used. The methods section does not mention this in the Index test section. Prior studies of CRP in TB use a standard sensitivity assay. Can the authors explain why a high sensitivity assay was chosen and whether the type of assay (hs or standard) would impact results?

Results:

1. Table 1 - TB symptoms at presentation. Same as 2nd Methods comment. Also, if presence of at least 1 TB symptom was a requirement for this analysis and no patients had 0 symptoms, shouldn't the number of symptoms at presentation begin with 1 (opposed to '0-1')?

2. Page 14, Sensitivity and Specificity analysis - same as above major comment.

3. Page 17, 2nd paragraph - how were optimal cut-points determine? by AUROC? If so, this approach weighs sensitivity and specificity equally, but clinically, most ppl would feel that 1 missed case of active TB far outweighs a 1 false-positive case. From this clinical perspective, it might make more sense to fix sensitivity at 90% to identify optimal CRP cut-point. FYI: the manuscript also mentions alternative CRP cut-points in the Discussion (line 288-290, 324 paragraph).

4. Page 17, 3rd paragraph - related to major comment above. Recommend using CRP triage testing as it would be applied in currently recommended TB testing algorithms (e.g., HIV negative patients with cough≥ 2 weeks)

Discussion:

1. Page 19, line 298 - replace 'conversion' with 'positivity'?

2. Page 19, lines 302-303 - this sentence is unclear.

**********

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PLoS One. 2021 Jul 12;16(7):e0254002. doi: 10.1371/journal.pone.0254002.r002

Author response to Decision Letter 0


10 Mar 2021

For ease of reference, the specific reviewer and editor comments and our associated replies are detailed in a table format in the document uploaded as a response to the reviewers. For ease of access, these are listed here too.

We note the editor’s request to review our document formatting and are glad to say that we have amended our title page to better fit editorial requirements. We apologise this was overlooked in our initial submission. On review of the rest of the document, we believe all other formatting requirements have been followed.

We will address reviewers points below sequentially.

Reviewer 1:

Major points:

Comment

Line 110-119: How were controls selected? Were controls unmatched? From line 159 it seems they were matched on HIV status.

Response:

This point has been addressed by further clarifying how cases and controls were selected and the fact that they were matched by HIV status in the relevant section of the methods.

Comment:

Line 175-177: I don't think it's appropriate to conduct a linear regression on case-control data without correcting for selection bias associated with oversampling of cases. For example, see doi: 10.1093/biostatistics/kxt041

Response:

We believe that this methodology proposed by the reviewer is designed to address circumstances in which cases and controls are selected with unequal probability and therefore we are not sure that it applies to our study.

Comment:

Additionally, with a data-driven variable selection procedure for your model, please also include stability / sensitivity analyses. See doi:10.1002/bimj.201700067

Response:

We agree with the reviewer that in data-driven variable selection a sensitivity analysis is an important part of best-practice methodology. However, as the number of variables we included a priori in the univariate part of our analysis was small (8 in total), we felt that carrying out a full sensitivity analysis to justify our variable selection wasn't necessary.

Comment:

Line 171-172: Similarly, the ROC analysis should be adjusted for the case-control design. See doi: 10.1016/j.acra.2013.03.004, and doi: 10.1373/clinchem.2012.186007

Response:

As with the point above on our linear regression, we believe that this methodology proposed by the reviewer is designed to address circumstances in which cases and controls are selected with unequal probability and therefore we are not sure that it applies to our study.

Minor points:

Comment:

Line 29: no study has assessed its suitability as a triage test." Similarly stated on line 353. What about doi: 10.1097/QAD.0000000000001902, and doi: 10.5588/ijtld.13.0519 ?

Response:

We agree with the reviewer that the referenced work has investigated CRP as a triage test in HIV+ participants but that there isn’t a dedicated study we are aware of that looks at HIV-negative patients. We have amended the manuscript to reflect this.

Comment:

Line 83-89: Citation

Response:

We agree with the reviewer and have actioned this point

Comment:

Line 165: Parametric is a general term for any probability distribution. Do you mean normally distributed? How was this determined?

Response:

We agree with the reviewer and have changed this to ‘normally-distributed’ in the manuscript

Comment:

Table 1: Please include Xpert status for cases

Response:

We agree with the reviewer and have actioned this point

Comment:

Line 361: 50% generally reported in clinical practice" This needs a citation. Maybe in HIV + cohorts, but generally?

Response:

We agree with the reviewer and have cited this point

Reviewer 2:

Major points:

Comment:

Your paper makes it clear that you are concerned with CRP in conjunction with another test, which you expect will usually be Xpert MTB/Rif (but could be culture). So in referring to the TPP specified minimum sensitivity and specificity, should you not be looking at the figures for the composite of CRP followed (if threshold is met) by Xpert, and not CRP alone? If one can choose the appropriate CRP threshold to obtain high enough sensitivity, and then follow it with Xpert, why should we demand high specificity of CRP alone? Your table S6 notes that with Xpert as the second part of this composite CRP-Xpert testing one sees 100% specificity.

You report that CRP fails to meet the TPP specified requirement of at least 70% specificity but in this paper you are not suggesting CRP alone. Even a CRP specificity less than 70% could result in some reduction of Xpert testing (the only benefit of high CRP specificity in your composite testing model seems to be a health system benefit - as opposed to improved diagnostic yield which is not diminished by the low specificity of CRP, when used with Xpert or culture).

Response:

We agree with the reviewers point that the overall performance of a two-step algorithm is highly important to consider. However, our work is designed to focus specifically on the question of performance related to first step of that algorithm and, as the reviewer states in the second paragraph, its health systems benefit by rationalising the use of confirmatory testing. The WHO target product profile for a triage test is designed to be in reference to the confirmatory test chosen and so is a good standard for our research question. The 70% specificity target for a triage test in this instance accounts for the fact that at lower prevalence settings a lesser specificity would cause the number of false positives to exceed the number of true positives. This would erode the health system benefit to the point that they may be outweighed by the potential loss of trust in the triage test. We have altered the manuscript to try and make this aim clearer.

Comment:

In your discussion of the sensitivity of CRP among HIV+ and HIV- persons with TB you note the use of different threshold values for HIV+ persons, or the possible addition of clinical features to an algorithm. No mention is made of the possibility of more than one CRP measurement per patient during the diagnostic evaluation period. Your analysis and others make it clear that CRP is more likely to be elevated when there are clinical (eg., fever) and pathological (eg., hemoptysis, indicative of cavitation) features of intense inflammation, or its sequelae. It is likely that symptoms become more obvious the longer one has untreated TB, but sequential changes in CRP among persons suspected of having TB have not, as far as I am aware, been examined. Work by Stephen Lawn and others has looked at sequential CRP in response to TB treatment which may offer a diagnostic confirmation when a fall in CRP is observed.

Response:

We agree with the reviewer on this point that this represents a very interesting line of enquiry and one that should be pursued. Unfortunately, we do not have the data to be able to pursue it in this work. However, we have altered the discussion to make mention of it.

Minor points:

Comment:

Line 37-38: The abstract states that "The PTB reference standard was a contemporaneously collected single sputum MGIT culture result."

Line 104-106: Later in Materials and Methods it is stated that "To be included in the analysis all participants had to provide both a blood sample and at least 2 sputum samples at enrolment prior to initiation of anti-tuberculous therapy."

Is the reference standard for diagnosis of TB one or two MGIT TB cultures? If two, are they performed on different specimens

Response:

We agree with the reviewers point that these statements in the manuscript are somewhat and unintentionally contradictory. We have amended the abstract to reflect the methods – the reference standard is two MGIT as is now stated in the Methods.

Comment:

Line 311: However, the suboptimal specificity might make the implementation of the test in an Xpert-algorithms impossible." The word 'algorithm' should be singular (or the word 'an' should be removed if the plural is intended).

Response:

We agree with the reviewer and have actioned this point

Reviewer 3

Major points:

Comment:

However, my main concern with this conclusion is that TB triage testing would not be applied to individuals with any TB symptom, unless they were at high risk for TB (e.g., HIV-positive). For everyone else, TB triage testing would be applied to patients with cough ≥2 weeks, however CRP diagnostic accuracy data for this group was not presented in this analysis and is likely to yield different diagnostic accuracy results. If symptom duration data is available, diagnostic accuracy of CRP should be assessed in the appropriate target populations for triage testing (cough ≥2 weeks if HIV-neg, any TB symptom in the past 1 month if HIV-pos).

Response:

We agree with the reviewer that triage testing would usually be offered to the patient population they specify. However, in this work we tried to cast a wider net for our primary analysis and chose current cough as opposed to cough ≥2 weeks as this was shown to be a more sensitive screening algorithm for PTB in the following paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3391193/. A sub-analysis to assess the diagnostic performance of CRP in the target populations specified by the reviewer would be a good addition to our manuscript but unfortunately, we do not have sufficient granularity in our symptom data to do so.

Comment:

TB test nomenclature - Because the TB literature has used 'triage test' to refer to both primary screening tests (a test applied to an unselected group to identify individuals with suspected disease requiring confirmatory testing) as well as secondary screening tests which is the conventional definition (a test applied to individuals with suspected to disease with the goal of reducing the proportion requiring confirmatory testing), it would be helpful for the authors to be very explicit with how this manuscript defines triage test.

-- Abstract - please consider clarifying definition of triage test here. Currently, the first sentence could also be used to describe a primary screening test.

- Intro, 2nd paragraph - I'm not familiar with the term 'two-stage diagnostic algorithm,' used here and find it a bit confusing. Seems like 'two-stage diagnostic algorithm' doesn't include cough ≥2 weeks (screening test) but describes triage testing and confirmatory testing when applied to patients with cough ≥ 2 weeks. Please consider using conventional terminology/nomenclature and clearly defining these when more than 1 definition is commonly used.

Response:

We agree with the reviewer that our use of ‘triage test’ and ‘two-stage diagnostic algorithm’ in the manuscript is not specific enough as it stands and we have altered the relevant sections in the abstract and main text to make them so, in line with their suggestion.

Comment:

Geographic differences in CRP diagnostic accuracy - CRP sensitivity was lower in Asian countries (Cambodia, Vietnam). It would be helpful to discuss this a bit more in the discussion. Marc Lipman (https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-016-1612-1) reported similar findings: Asian ethnicity was associated with lower median CRP levels among those with TB. -- Tables S2 and S4 - why is CRP diagnostic accuracy for Vietnam so different in Table S2 and S4?

Response:

We agree with the reviewer’s point here and have expanded this paragraph in the discussion to include the suggested reference. Sadly, we do not have strain data for our patients to explore this line of enquiry further. Regarding the reviewers point about the difference between Vietnamese data in Table S2 and S4 – Xpert MTB/Rif testing was carried out only on a more recent subgroup of the total Vietnamese cohort – this data is presented in S2. Culture data for the total Vietnamese cohort is presented in S4. We did further analysis to interrogate this difference. Culture performance in the subgroup presented in S2 was better than for the cohort as a whole in S4, although the difference was less marked that presented between S2 and S4. We conducted some analysis as to the effect of age of sample in the cohort as a whole and found no significant correlation between age and CRP levels. However, there was a signal when this analysis was applied to the Vietnamese data alone. Against a sample-degradation hypothesis, CRP has been shown to be stable in serum for extended periods of time DOI: 10.1016/j.clinbiochem.2013.12.014. We feel it is possible there is some age-related effect here, but that also the overall performance of CRP in Vietnam is also related to host factors and strain time as laid out in the paper the reviewer mentions.

Minor points:

Comment:

Line 78: Should change "PTB outpatients" to "outpatients with suspected TB (or outpatients with TB symptoms)."

Response:

We agree with the reviewer and have actioned this point

Comment:

Line 82-83: Are prior studies limited when the reference cited is a meta-analysis that includes 6 studies that included HIV-negative patients? Also, please consider briefly (in 1 or 2 sentences) summarizing the results of this SR/MA that are relevant to this manuscript, which would provide readers with some context for the following 2 sentences.

Response:

We agree with the reviewer and have actioned this point, changing the wording of the relevant part of the manuscript and summarising the results of this SR.

Comment:

Line 83-85: This sentence suggests that CRP specificity will be lower among HIV-negative patients, is that the intent? I would assume the opposite because of lower rates of infection relative to HIV-positive patients.

Response:

We agree with the reviewer that this section as it stands didn’t follow. We have amended it accordingly.

Comment:

Line 85-86: Individuals who present to healthcare with symptoms suggestive of PTB (therefore requiring triage instead of screening)..." With the current TB testing algorithm, patients with TB symptoms require confirmatory testing. I understand the point being made is that CRP triage testing can be expected to have reduced specificity relative to CRP screening but I think the comment in parentheses obscures this point

Response:

We agree with the reviewer and have actioned this point to make it clearer.

Comment:

Line 90: Should the last reference in paragraph 3 (ref 13) be deleted here?

Response:

We agree with the reviewer and have actioned this point

Comment:

Line 99-101: Please provide more detail about the study population (e.g., outpatients, inpatients or both?)

Response:

We agree with the reviewer that more detail is required and have amended the manuscript

Comment:

Line 101-104: Same as above major comment: If symptom duration data are available, please pull out cough ≥2 weeks and any 1/4 TB symptom in past month.

Response:

As we have mentioned above in response to the major comment, whilst we agree with the reviewer that this would be a worthy analysis, we do not have the data to complete it.

Comment:

Last sentence of introduction mentions that a high sensitivity CRP (hsCRP) assay was used. The methods section does not mention this in the Index test section. Prior studies of CRP in TB use a standard sensitivity assay. Can the authors explain why a high sensitivity assay was chosen and whether the type of assay (hs or standard) would impact results.

Response:

We agree with the reviewers point that there is a discrepancy here. The analyser employed in this study does have the ability to process hsCRP. However, for this study we employed a standard sensitivity mode. The manuscript has been amended to reflect this and resolve the discrepancy

Comment:

Table 1: TB symptoms at presentation. Same as 2nd Methods comment. Also, if presence of at least 1 TB symptom was a requirement for this analysis and no patients had 0 symptoms, shouldn't the number of symptoms at presentation begin with 1 (opposed to '0-1')?

Response:

We agree with the reviewers point here – the 0-1 symptoms at presentation were a mistake – this should be 1 symptom. We have amended the manuscript and figures accordingly

Comment:

Page 17, 2nd paragraph: how were optimal cut-points determine? by AUROC? If so, this approach weighs sensitivity and specificity equally, but clinically, most ppl would feel that 1 missed case of active TB far outweighs a 1 false-positive case. From this clinical perspective, it might make more sense to fix sensitivity at 90% to identify optimal CRP cut-point. FYI: the manuscript also mentions alternative CRP cut-points in the Discussion (line 288-290, 324 paragraph).

Response:

We agree with the reviewers point that further clarity is required as to the methodology employed to calculate optimal cutoff-points. We have now amended the methods section of the manuscript to make this clearer. Sensitivity and specificity were weighed equally in the TPP of the WHO and we feel that the importance of one versus the other depends on the TB prevalence in a given setting. As a result, we have gone with the methodology above to specify optimal cutoff-points as it lends weight to the impact of both aspects of test performance.

Comment:

Page 17, 3rd paragraph: related to major comment above. Recommend using CRP triage testing as it would be applied in currently recommended TB testing algorithms (e.g., HIV negative patients with cough≥ 2 weeks)

Response:

We have expanded on the reasoning behind our decision-making in regard to this point in the response to the major comment above.

Comment:

Line 298: replace 'conversion' with 'positivity'?

Response:

We agree with the reviewer and have actioned this point

Comment:

Line 302-303: this sentence is unclear

Response:

We agree with the reviewer and have amended this sentence

Attachment

Submitted filename: CRP for TB Triage Reviewer comments with replies v1.2.docx

Decision Letter 1

Frederick Quinn

16 Apr 2021

PONE-D-20-19334R1

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

PLOS ONE

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: (No Response)

Reviewer #2: (No Response)

Reviewer #4: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Partly

Reviewer #2: Yes

Reviewer #4: Partly

**********

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Reviewer #1: I Don't Know

Reviewer #2: Yes

Reviewer #4: Yes

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Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #4: Yes

**********

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Reviewer #2: Yes

Reviewer #4: Yes

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6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: 3 of the 4 major points I raised were dismissed without substantive discussion. I have asked to have the manuscript reviewed by a statistician.

Reviewer #2: Thank for addressing my previous points (and apologies for my misconstrual of the TPP specificity).

A few questions arise on rereading that you are likely able to address easily:

(1) In Table 1 / Smear status, we are told there were 289 participants S+C+ and 102 S-C+, whereas in Table 3 to the left of S+C+ we are given n=663 and for S-C+ we are given n=476; these numbers are not the numbers for S+C+ and S-C+ and must refer to [S+C+ plus all TB test neg] and [S-C+ plus all TB neg] but this is not immediately clear on first reading (or second reading I confess) - it might help to explicitly state in the line just below the table "Smear-positive and smear-negative participants were each assessed against all TBneg (n= 374)", or to insert another line in the table for All TB test neg.

(2) In the Discussion you note (in lines 306-309) that using a CRP cut off of 8 mg/L would result in approximately 26% of culture positive cases being missed. I expect this 26% to accord with the numbers given in Supplementary Figure 1 which relates to the use of the 8 mg/L cut off. In S Fig 1 it appears that a total of 79 culture + cases occurred among those with CRP <8 mg/L (with the total of all culture positive cases being 79 + 312 = 391) which looks like 20.2% (79/391) were missed (because CRP <8). Where does 26% come from? Is there a typographical error and you mean to continue referring to an 18 mg/L cut off, not an 8 mg/L cut off as the text currently states? (In that case it would obviously have nothing to do with S Fig 1.)

Reviewer #4: The study was generally well written. Please note that this is my first review of this paper. Although I have a long list of comments, they are mainly minor and for clarification. The only major comment is an error which can be easily corrected. This is the reason I rated the manuscript as partly technically sound.

Major

1. Table S6 and the CRP triage algorithm: number requiring confirmatory Xpert test was 59.4% - this is not “almost half” as reported because this is almost 60%. According to page 17, 60/226 TBpos participants with Xpert results (26.5%) would be missed. However, in Table 1, there were 183 Xpert+ and 38 Xpert- = 221 Xpert results among TBpos participants. Furthermore, it was stated that “if Xpert MTB/Rif were implemented for all without CRP triage, 38 (16.8%) participants would be missed”. This is correct if indeed the number of Xpert results is 226 but not 221 (38/221 = 17.2%). However, the sensitivity reported in Table S6 is 82.8% which means 17.2% will be missed. Please check these numbers or am I missing something? If I’m correct please also fix references to these numbers in the discussion.

Minor

2. Abstract: please use clinical or diagnostic accuracy as the term “clinical utility” is often used to refer to impact on patient outcomes.

3. Abstract: were the 765 serum samples from 765 adults presenting with respiratory symptoms or were there multiple samples from some patients? The results in the main text reported 765 participants but not clear in the abstract.

4. Abstract: is MGIT a well know acronym?

5. Abstract and elsewhere: “pooled sensitivity” The use of ‘pooled’ is confusing and misleading. The results are from a single study and not from a meta-analysis or from combining results from multiple cohorts in one study. A more appropriate word is ”overall” but only needed when there is ambiguity about whether you are referring to a subgroup or all patients.

6. Abstract and elsewhere: Please change “operator” to “operating” in “Receiver Operator Characteristic”.

7. Abstract discussion and main discussion: I can’t see the promise since it failed to meet the minimum TPP value of 90% sensitivity even in a retrospective study and results were not reported in the abstract for HIV+ individuals. Even for PLHIV, is it really promising given the poor specificity that is no better than tossing a coin when assessed against culture?

8. Study population: the study is described as a nested case control study. Is this correct since not all the cases were included unless I’m missing something?

9. Sample size calculation: “targeted performances of the index test” please specify what they are for sensitivity and specificity – were these the values in the TPP? Were the same estimates used for the HIV+ subpopulation?

10. Statistics: Suggest rephrasing the sentence “Results were reported as a point estimate with 95%CI calculated using Wilson’s method for pre-defined CRP cutoff-points” as it sort of implies Wilson’s method is for the cutoffs rather than CIs. Selecting variables based on statistical significance in univariable analysis is discouraged while the use of backward elimination is encouraged. Given the exploratory nature of the analysis and because it was pre-specified, I will not make this a major issue but please note for future analyses. How did you deal with missing data or was your analysis a complete case analysis? Was the same dataset used for the univariable and multivariable analysis as the dataset will be different depending on whether or not each variable had some missing data.

11. Results: please give the number of women so it reads “…X (40.1%) were women…”. Also give % for “…527/765…” so it reads “…527/765 (X%)…” There is a typo in “Night sweats” should be “night sweats”

12. Please give CIs for all estimates of sensitivity and specificity reported on page 14. Please write sens and spec in full on this page when referring to the TPP.

13. Figure S1_Fig did not download properly so I cannot comment on it.

14. Page 15: Please cross-reference Table S2 for the results against XRS that were reported on this page.

15. Results of subgroup analyses: results of HIV+ and HIV- patients were compared but specificity not stated for HIV positives especially as the sensitivity of >90% was highlighted. Please give the CIs along with the estimates reported in this section.

16. Inconsistent use of the terms HIV+/HIV-, HIV-positive/HIV-negative – please choose one pair and use consistently throughout. Are you using HIV+ or PLHIV?

17. Page 17: “…difference in the AUC between these two populations was not significant.” Did you formally test this? I interpret this to be the case with the use of term “not significant”.

18. Discussion: “…but fell 13% short of the specificity of the TPP…” I think you mean 13 percentage points rather than 13% because you are referring to an absolute difference rather than 13% of the TPP specificity value. Same too later in that paragraph where you mentioned “10% more”.

19. Discussion: earlier stated that the analysis by study site was pre-specified (in methods as country of origin of the sample,) but in the discussion stated as post-hoc. Which is it?

20. I couldn’t figure out why the numbers do not add up to the total for smear positive culture positive and smear negative culture positive.

21. For complete reporting, please give the number of cases in addition to n (e.g. n/N) in all main and supplementary tables like Table 3 that report sensitivities and specificities. This will enable readers to easily derive 2x2 tables if they wish to do so.

22. The STARD checklist was used to report the study but was not included as a supplementary file. Not required by the journal?

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Reviewer #1: No

Reviewer #2: No

Reviewer #4: No

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PLoS One. 2021 Jul 12;16(7):e0254002. doi: 10.1371/journal.pone.0254002.r004

Author response to Decision Letter 1


17 May 2021

For ease of reference, the specific reviewer and editor comments and our associated replies are detailed in a table format in the document uploaded as a response to the reviewers. For ease of access, these are listed here too.

We will address reviewers points below sequentially as raised.

Reviewer 1:

Major points:

Comment: of the 4 major points I raised were dismissed without substantive discussion. I have asked to have the manuscript reviewed by a statistician

Response: We apologise to the reviewer that they felt their points were dismissed without a proper discussion into issues raised. We too have had the manuscript reviewed by a statistician and our reply is as follows:

We think the methodology the reviewer proposes broadly makes sense. We agree that in large and complex analyses data-driven variable selection and correction for selection bias are important facets of sound methodology with studies such as ours.

However, these techniques are often aimed at improving the validity of analysis concerning associations with secondary outcomes that go beyond the main outcome of disease. Furthermore, as we have previously mentioned, they are typically used to address circumstances in which cases and controls are selected with unequal probability, a situation that does not strictly apply to our study. We are also of the opinion our regression analysis is a relatively “simple” one, largely designed to be illustrative, and as such we don’t see significant additional value in overcomplicating it with the suggested methodology, especially as the number of variables included a priori was small. While our ROC curve analysis is clearly more central to the study’s results, we feel the explanation above justifies the methodology we have used.

Reviewer 2:

Minor points:

Comment: In Table 1 / Smear status, we are told there were 289 participants S+C+ and 102 S-C+, whereas in Table 3 to the left of S+C+ we are given n=663 and for S-C+ we are given n=476; these numbers are not the numbers for S+C+ and S-C+ and must refer to [S+C+ plus all TB test neg] and [S-C+ plus all TB neg] but this is not immediately clear on first reading (or second reading I confess) - it might help to explicitly state in the line just below the table "Smear-positive and smear-negative participants were each assessed against all TBneg (n= 374)", or to insert another line in the table for All TB test neg

Response: We agree with the reviewer that this is not clear and have amended the legend below the table to include how these numbers were arrived at, in line with the reviewer’s recommendations.

Comment: In the Discussion you note (in lines 306-309) that using a CRP cut off of 8 mg/L would result in approximately 26% of culture positive cases being missed. I expect this 26% to accord with the numbers given in Supplementary Figure 1 which relates to the use of the 8 mg/L cut off. In S Fig 1 it appears that a total of 79 culture + cases occurred among those with CRP <8 mg/L (with the total of all culture positive cases being 79 + 312 = 391) which looks like 20.2% (79/391) were missed (because CRP <8). Where does 26% come from? Is there a typographical error and you mean to continue referring to an 18 mg/L cut off, not an 8 mg/L cut off as the text currently states? (In that case it would obviously have nothing to do with S Fig 1.)

Reponse: We agree with the reviewer that these numbers do not concord with each other.

The reason for the use of 26% was because this statement in the discussion related to the use of the Xpert reference standard not the microbiological reference standard – 26% was calculated on the basis of the number of participants that had been tested with Xpert MTB/Rif who would have been missed diagnoses according to the use of the algorithm specified in the “CRP Triage Algorithm” section of the results. We have amended the discussion to make this clearer.

However, the value of 26% itself was incorrect – as pointed out by a separate reviewer, we mistakenly included indeterminate Xpert results in the denominator to arrive at this value. For all other analysis in this paper, we had excluded indeterminate Xpert results (our intention). We have clarified this intention in the methods and amended all relevant areas in the results and discussion to correct this error. We apologise for the confusion and hope these amendments address the reviewer’s comment.

Reviewer 4

Major points:

Comment: Table S6 + CRP Triage Algorithm - The number requiring confirmatory Xpert test was 59.4% - this is not “almost half” as reported because this is almost 60%. According to page 17, 60/226 TBpos participants with Xpert results (26.5%) would be missed. However, in Table 1, there were 183 Xpert+ and 38 Xpert- = 221 Xpert results among TBpos participants. Furthermore, it was stated that “if Xpert MTB/Rif were implemented for all without CRP triage, 38 (16.8%) participants would be missed”. This is correct if indeed the number of Xpert results is 226 but not 221 (38/221 = 17.2%). However, the sensitivity reported in Table S6 is 82.8% which means 17.2% will be missed. Please check these numbers or am I missing something? If I’m correct please also fix references to these numbers in the discussion

Response: Regarding the reviewer’s first point, the authors intention was to convey that almost half of participants did not require a confirmatory test. However, given that this may be deemed inaccurate, we have changed the manuscript to read that 40% (100-59.4% = 40.6% ) did not require confirmatory testing. We hope this addresses the reviewer’s first point.

Regarding the second half of the reviewer’s comment, the confusion arises due to indeterminate Xpert MTB/Rif test results. In 5 cases where the Xpert result was indeterminate, the culture result was positive, hence the differing denominators of 221 in the table but 226 on page 17. The use of 226 as the denominator was a mistake as we decided to exclude indeterminate Xpert results from the analyses we completed on Xpert performance. As a result, we have changed the relevant parts of the manuscript to reflect the numbers and percentages that are incorrect. We have also added a sentence to the Methods section to clarify how indeterminate Xpert MTB/Rif results were handled.

Minor points:

Comment: Abstract - please use clinical or diagnostic accuracy as the term “clinical utility” is often used to refer to impact on patient outcomes

Reponse: The authors agree with the reviewer and have made the suggested change

Comment: Abstract - were the 765 serum samples from 765 adults presenting with respiratory symptoms or were there multiple samples from some patients? The results in the main text reported 765 participants but not clear in the abstract

Response: Each sample was from a single study participant. The authors have amended the wording in the abstract to reflect this.

Comment: Abstract - Is MGIT a well know acronym?

Response: MGIT is the most commonly used mycobacterial liquid culture medium, but the authors recognise that best practice is define all acronyms at first usage and so have modified the abstract to replace “MGIT” with “liquid” in line with the reviewer’s comment.

Comment: Abstract + elsewhere - “pooled sensitivity” The use of ‘pooled’ is confusing and misleading. The results are from a single study and not from a meta-analysis or from combining results from multiple cohorts in one study. A more appropriate word is ”overall” but only needed when there is ambiguity about whether you are referring to a subgroup or all patients

Response: We agree with the reviewer and have changed all relevant sections of the manuscript

Comment: Abstract - Please change “operator” to “operating” in “Receiver Operator Characteristic”

Response: We agree with the reviewer and have changed all relevant sections of the manuscript

Comment: Abstract discussion and main discussion - I can’t see the promise since it failed to meet the minimum TPP value of 90% sensitivity even in a retrospective study and results were not reported in the abstract for HIV+ individuals. Even for PLHIV, is it really promising given the poor specificity that is no better than tossing a coin when assessed against culture?

Response: We agree with the reviewer that overall performance of the test was suboptimal with respect to the MRS and the target TPP. However, when different CRP cutoff-points were explored, performance of the test in HIV positive participants did near TPP; at a cutoff-point of 23mg/L sensitivity was 85.6% and specificity was 69.6% for HIV+ participants as we stated in the subgroup section of the results. Further to this, were an Xpert reference standard to be used as would be more likely in many low-income settings, performance of CRP relative the TPP improves albeit due to a reduction in sensitivity of the confirmation test. Our supplementary data (Table S3) shows that at a cutoff-point of 18mg/L using the XRS, overall sensitivity and specificity were 84.7% and 69.5% respectively. Using difference cutoff-points for HIV+ and HIV- participants produced similar performances in both subgroups. We would argue that these results are sufficiently close enough to the TPP to warrant further investigation into the role of CRP as a triage test in this cohort of patients and to justify our assertion that they show promise.

Comment: Study population - the study is described as a nested case control study. Is this correct since not all the cases were included unless I’m missing something?

Response: The authors feel that the present study does qualify as a nested case-control design. While it is very true that nested case-control designs often include all cases from the parent cohort as the reviewer states, this is not necessary to define a case-control design. The key defining characteristic of a nested case-control study is that a random sample of cases and controls are selected from a fully enumerated cohort, which is the case here. This is supported in Rothman KJ, Greenland S, Lash TL, editors. Modern epidemiology. Lippincott Williams & Wilkins; 2008.

Comment: Sample size calculation - “targeted performances of the index test” please specify what they are for sensitivity and specificity – were these the values in the TPP? Were the same estimates used for the HIV+ subpopulation?

Response: We agree and have made the changes suggested in the reviewer’s comment

Comment: Statistics - Suggest rephrasing the sentence “Results were reported as a point estimate with 95%CI calculated using Wilson’s method for pre-defined CRP cutoff-points” as it sort of implies Wilson’s method is for the cutoffs rather than CIs. Selecting variables based on statistical significance in univariable analysis is discouraged while the use of backward elimination is encouraged. Given the exploratory nature of the analysis and because it was pre-specified, I will not make this a major issue but please note for future analyses. How did you deal with missing data or was your analysis a complete case analysis? Was the same dataset used for the univariable and multivariable analysis as the dataset will be different depending on whether or not each variable had some missing data.

Response: We agree with the reviewer on the first point regarding the structure of the quoted sentence and have amended the manuscript to make this clearer.

We note the reviewer’s comments surrounding the univariable analysis with thanks and we will incorporate this advice into future analyses.

Our analysis was a complete case analysis, with the same dataset used for both univariable and multivariable analyses. We have amended the methods section to clarify this.

Comment: Result - please give the number of women so it reads “…X (40.1%) were women…”. Also give % for “…527/765…” so it reads “…527/765 (X%)…” There is a typo in “Night sweats” should be “night sweats”

Response: We agree with the reviewer and have amended these points

Comment: Page 14 - Please give CIs for all estimates of sensitivity and specificity reported on page 14. Please write sens and spec in full on this page when referring to the TPP.

Response: We agree with the reviewer and have amended the manuscript with the suggested changes.

Comment: Figure S1_Fig did not download properly so I cannot comment on it

Response: We will attempt to re-upload this file to see if it assists the reviewer in downloading it.

Comment: Page 15 - Please cross-reference Table S2 for the results against XRS that were reported on this page

Response: We agree with the reviewer and have amended this

Comment: Results – subgroup analysis - results of HIV+ and HIV- patients were compared but specificity not stated for HIV positives especially as the sensitivity of >90% was highlighted. Please give the CIs along with the estimates reported in this section.

Response: We agree with the reviewer and have amended this section of the results to include 95%CI and the requested specificities from Table 3.

Comment: Throughout - Inconsistent use of the terms HIV+/HIV-, HIV-positive/HIV-negative – please choose one pair and use consistently throughout. Are you using HIV+ or PLHIV?

Response: We agree with the reviewer that our use of HIV+ vs positive etc is inconsistent and so we have amended the manuscript to use the nomenclature HIV+ and HIV-.

Comment: Page 17.- “…difference in the AUC between these two populations was not significant.” Did you formally test this? I interpret this to be the case with the use of term “not significant”.

Response: We did formally test this but did not report the p value for brevity’s sake.

Comment: Discussion - “…but fell 13% short of the specificity of the TPP…” I think you mean 13 percentage points rather than 13% because you are referring to an absolute difference rather than 13% of the TPP specificity value. Same too later in that paragraph where you mentioned “10% more”

Response: We did mean percentage points and not percent and thank the reviewer for pointing this out. We have changed the relevant parts of the manuscript.

Comment: Discussion - earlier stated that the analysis by study site was pre-specified (in methods as country of origin of the sample,) but in the discussion stated as post-hoc. Which is it?

Response: Analysis by country of origin was post-hoc and the methods section was incorrect. We have amended the methods to reflect this.

Comment: Results/Table - I couldn’t figure out why the numbers do not add up to the total for smear positive culture positive and smear negative culture positive.

Response: We have amended the legend to the relevant table to make it clearer as to how the figures were reached.

Comment: Table 3 and supplementary material - For complete reporting, please give the number of cases in addition to n (e.g. n/N) in all main and supplementary tables like Table 3 that report sensitivities and specificities. This will enable readers to easily derive 2x2 tables if they wish to do so.

Response: We agree and have amended Table 3 and the supplementary tables S2 and S4 in line with the reviewer’s suggestion.

Comment: Supplementary material - The STARD checklist was used to report the study but was not included as a supplementary file. Not required by the journal?

Response: The reviewer is correct that this was not required by the journal. However, we are happy to upload the guidelines as a supplementary file.

Attachment

Submitted filename: CRP for TB Triage Reviewer comments with replies v2.0.docx

Decision Letter 2

Frederick Quinn

2 Jun 2021

PONE-D-20-19334R2

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

PLOS ONE

Dear Dr. Schumacher,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

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Academic Editor

PLOS ONE

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

Reviewer #4: (No Response)

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #4: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #4: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #4: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #4: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #2: The clarity of the paper is much improved in this version. I would recommend acceptance but have chosen 'minor revision' only because there are 3 small errors noted:

(1) Line 28: Since the word data is the plural of datum, the sentence should read "...limited data are available..."

(2) Line 317: the word 'quarter' is misspelled (appears as quater).

(3) Line 372-3: Since 'data' is plural, the sentence should read "Previous data assessing the role of CRP in the diagnosis of TB have largely been...", not 'has largely been'.

Reviewer #4: Thank you for addressing all of my comments appropriately. I have a few typos I spotted which are due to the edits you made.

1. Where you have replaced "a pooled" with "a overall", please correct to "an overall".

2. Discussion: in the results you gave 40.6% but stated 40% in the discussion. Please write "about 40%" of give exact value of 40.6%.

3. Discussion: "quater" should be "quarter".

**********

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Reviewer #1: No

Reviewer #2: No

Reviewer #4: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

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PLoS One. 2021 Jul 12;16(7):e0254002. doi: 10.1371/journal.pone.0254002.r006

Author response to Decision Letter 2


7 Jun 2021

For ease of reference, the specific reviewer and editor comments and our associated replies are detailed in a table format in the document uploaded as a response to the reviewers. For ease of access, these are listed here too.

We will address reviewers points below sequentially as raised.

Reviewer 2:

Comment: Line 28: Since the word data is the plural of datum, the sentence should read "...limited data are available..."

Response: We agree with the reviewer and have corrected this grammar in the abstract

Comment: Line 317: the word 'quarter' is misspelled (appears as quater).

Response: We thank the reviewer for bring our attention to this! We have changed the spelling.

Comment: Line 372-3: Since 'data' is plural, the sentence should read "Previous data assessing the role of CRP in the diagnosis of TB have largely been...", not 'has largely been'.

Response: We agree with the reviewer and have corrected this grammar.

Reviewer 4:

Comment: Where you have replaced "a pooled" with "a overall", please correct to "an overall"

Response: Many thanks to the reviewer for bringing this to our attention. We have made this correction to the relevant points in the manuscript have corrected a similar grammatical mistake we identified elsewhere.

Comment: Discussion: in the results you gave 40.6% but stated 40% in the discussion. Please write "about 40%" of give exact value of 40.6%.

Response: We agree with the reviewer and have altered the relevant bit of the discussion to read “about 40%”.

Comment: Discussion: "quater" should be "quarter".

Response: Similar to point 1, thanks again to the reviewer for bringing this to our attention. Overall, a lesson in making sure one does a final spell check!

Attachment

Submitted filename: CRP for TB Triage Reviewer comments with replies v3.0.docx

Decision Letter 3

Frederick Quinn

18 Jun 2021

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

PONE-D-20-19334R3

Dear Dr. Schumacher,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Frederick Quinn

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #2: All comments have been addressed

Reviewer #4: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #2: Yes

Reviewer #4: (No Response)

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #2: Yes

Reviewer #4: (No Response)

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #2: Yes

Reviewer #4: (No Response)

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #2: Yes

Reviewer #4: (No Response)

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #2: All of the outstanding corrections have been made. In my opinion, the manuscript should be accepted now.

Reviewer #4: (No Response)

**********

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Reviewer #2: No

Reviewer #4: No

Acceptance letter

Frederick Quinn

2 Jul 2021

PONE-D-20-19334R3

Evaluation of the diagnostic performance of laboratory-based c-reactive protein as a triage test for active pulmonary tuberculosis

Dear Dr. Schumacher:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Frederick Quinn

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Fig. Participant flow diagram for CRP cutoff-point of 8mg/L.

    (TIF)

    S2 Fig. Venn diagram showing distribution of TB-related symptoms in TBpos participants on presentation to health care (n = 391).

    Numbers represent number of participants presenting with the indicated symptom complex. Total TBpos participants presenting with night sweats n = 227, with haemoptysis n = 88, with recent weight loss n = 269 and with none of the above n = 61.

    (TIF)

    S3 Fig. Scatterplot of CRP concentration against time to sputum liquid culture positivity for TBpos participants.

    Blue dots represent individual CRP data points, red line demonstrates line of best fit and green demonstrates LOWESS locally weighted smoothing. As CRP concentration decreased linearly with increased time to sputum culture positivity, Pearson’s correlation was applied and found to be significant with a coefficient of -0.234 (p = 0.003).

    (TIF)

    S4 Fig

    ROC curve analysis of CRP performance in the diagnosis of tuberculosis using A) the MRS and B) the XRS, by HIV status. The shaded orange area represents the sensitivity and specificity combinations that meet at least the minimum target of one of the Target Product Profile characteristics. Minimum (Sens 90% Spec 70%) and Optimal (Sens 95% Spec 80%) Target Product Profile targets are plotted as a black diamond and black triangle respectively. Pre-defined CRP cutoff-points are plotted as red circles and yellow squares with optimal CRP cutoff-points plotted as green diamonds. In A) optimal CRP cutoff-points occurred at 23mg/L for HIV+ participants and 6mg/L for HIV- participants. In B), these cutoff-points were 29mg/L (Sensitivity 90.3% Specificity 68.3%) and 11mg/L (Sensitivity 86.0% and Specificity 68.8%) respectively. AUC = Area Under Curve; ROC = Receiver Operating Characteristic; CRP = C-reactive protein; MRS = Microbiological reference standard; XRS+ Xpert MTB/Rif reference standard.

    (TIF)

    S5 Fig

    ROC curve analysis of CRP performance in the diagnosis of tuberculosis against the MRS by A) Age of serum sample at time of CRP analysis and B) without Vietnamese sera older than 3,000 days. Variation by study site prompted post-hoc exploratory analysis, which revealed CRP diagnostic performance was significantly worse in pre-2011 samples taken in Viet Nam compared to those taken later. A significant negative correlation between CRP levels and serum sample age was seen in Vietnamese TBpos participants, without a similar correlation being observed in TBneg samples. Optimal sensitivity and specificity against MRS excluding this pre-2011 data (B) was 84.5% (95%CI 79.7–88.3) and 69.5% (95%CI 64.5–74.0) respectively at 12mg/L cutoff-point. This also explains much of the reported difference in CRP performance between the XRS and the MRS, as the pre-2011 Vietnamese participants did not receive Xpert testing. The shaded orange area represents the sensitivity and specificity combinations that meet at least the minimum target of one of the Target Product Profile characteristics. Minimum (Sens 90% Spec 70%) and Optimal (Sens 95% Spec 80%) Target Product Profile targets are plotted as a black diamond and a black triangle respectively. Pre-defined CRP cutoff-points are plotted as red circles (8mg/L) and yellow squares (10mg/L) with optimal CRP cutoff-points plotted as green diamonds. AUC = Area Under Curve; ROC = Receiver Operating Characteristic; CRP = C-reactive protein; MRS = Microbiological Reference Standard.

    (TIF)

    S1 Table. Characteristics of participants who received Xpert MTB/Rif testing.

    (PDF)

    S2 Table. Sensitivity and specificity of CRP against the XRS by study site, smear status, HIV status and number of symptoms at presentation.

    N = total number of cases and controls, n = number of TBpos cases as defined by the XRS. Smear-positive (n = 289) and smear-negative (n = 102) participants were each assessed against all TBneg (n = 374) participants, giving a total of 663 and 476 included participants respectively.

    (PDF)

    S3 Table. Threshold analysis of the performance of CRP against the XRS using ROC curve data, overall and by HIV status.

    (PDF)

    S4 Table. Sensitivity and specificity of CRP against the MRS by study site. N = total number of cases and controls, n = number of TBpos cases as defined by the MRS

    (PDF)

    S5 Table. Threshold analysis of the performance of CRP against the MRS using ROC curve data, overall and by HIV status.

    (PDF)

    S6 Table. The diagnostic accuracy of CRP triage against the MRS at varying CRP triage thresholds.

    In this algorithm, a positive CRP triage test above the stated threshold would trigger patients to move forward to confirmatory testing by the stated method. The performance of chest X-ray (CXR) as a triage test was assessed for comparison. A CXR was defined as positive for TB if the radiographic appearance was judged to be consistent with typical or atypical TB. The sensitivity and specificity of a single Xpert MTB/Rif against the MRS is also presented.

    (PDF)

    S7 Table. Univariate linear regression analysis of the relationship between CRP and selected variables.

    All variables with a p value <0.1 were considered for inclusion into multivariable analysis. Akaike Information Criterion values were then used to build the best model. CD4 count was excluded from the multivariable model despite meeting significance as only 95 study participants had recorded values. AIC was not reported for CD4 count as sample size differed from other variables.

    (PDF)

    S1 File. Study protocol.

    (DOCX)

    S1 Dataset

    (XLSX)

    Attachment

    Submitted filename: CRP for TB Triage Reviewer comments with replies v1.2.docx

    Attachment

    Submitted filename: CRP for TB Triage Reviewer comments with replies v2.0.docx

    Attachment

    Submitted filename: CRP for TB Triage Reviewer comments with replies v3.0.docx

    Data Availability Statement

    All relevant data are within the manuscript and its Supporting Information Files.


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