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Comparison of amino acid embeddings
| Embedding | ROC-AUC |
|---|---|
| Biophysical features | 0.76 ± 0.01 |
| Learned embedding | 0.75 ± 0.01 |
| BLOSUM62 matrix | 0.75 ± 0.01 |
Note: Mean and standard deviation of the AA CDR3 model configuration on 10-fold TCR split of the VDJ dataset. All tested amino acid embeddings show a similar performance.
