Minute 1. call to order
The annual Subcommittee meeting by videoconference was called to order by Peter Young at 11.00 UTC on 6 July 2020.
Minute 2. Record of attendance
Present (22): J. Peter W. Young (University of York, UK, chairperson), Philippe de Lajudie (IRD, Montpellier, France, secretary), Mitchell Andrews (Lincoln University, Canterbury, New Zealand), Julie Ardley (Murdoch University, Perth, Australia), Bertrand Eardly (Penn State Berks College, Reading, PA, USA), Nemanja Kuzmanović (Julius Kühn-Institut, Braunschweig, Germany), Florent Lassalle (Imperial College, St Mary’s Hospital, London, UK), Kristina Lindström and Seyed Abdollah Mousavi (University of Helsinki, Finland), Esperanza Martinez-Romero (UNAM, Cuernavaca, Mor., Mexico), Lionel Moulin (IRD, Montpellier, France), Xavier Nesme (INRA, University of Lyon I, Villeurbanne, France), Joanna Puławska (Research Institute of Horticulture, Skierniewice, Poland), Emma T. Steenkamp (University of Pretoria, South Africa), Tomasz Stępkowski (University of Life Sciences, Warsaw, Poland), Chang-Fu Tian (China Agricultural University, Beijing, China), Pablo Vinuesa (Centro de Ciencias Genómicas – UNAM, Cuernavaca, Mor., Mexico), Gehong Wei (Northwest A and F University, Yangling, Shaanxi, China), Anne Willems (University of Gent, Belgium) and Jerri Edson Zilli (Embrapa Agrobiologia, Seropédica, Rio de Janeiro, Brazil).
Apologies for absence (2): Alvaro Peix (Institute of Natural Resources and Agrobiology, Salamanca, Spain) and Ridha Mhamdi (Centre de Biotechnologie de Borj-Cédria, Hammam-lif, Tunisia).
Minute 3. Subcommittee publications
The minutes of our previous meeting (2019) have been published [1].
Minute 4. Membership issues
4.1. As pointed out in the minutes of our last meeting, the Statutes of the International Committee on Systematics of Prokaryotes have been revised [2]. We considered carefully article 6 detailing rules on the organization and missions of subcommittees. According to these, regular members (those who are members of a society affiliated to the International Union of Microbiological Societies (IUMS) and having voting rights in the administrative workings of the Subcommittee) are: J. Peter W. Young (Microbiology Society), Seyed Abdollah Mousavi (Iranian Society of Microbiology, ISM), Bertrand Eardly (American Society for Microbiology), Florent Lassalle (Microbiology Society), Kristina Lindström (Biobioseura), Esperanza Martinez-Romero (Asociación Mexicana de Microbiologia), Alvaro Peix (Spanish Society for Microbiology), Chang-Fu Tian (Chinese Society for Microbiology), Gehong Wei (Chinese Society for Microbiology), Anne Willems (Microbiology Society, Belgian Society for Microbiology), Jerri Edson Zilli (Brazilian Society of Microbiology) and Emma T. Steenkamp (South African Society for Microbiology, SASM). Co-opted members are: Mitchell Andrews, Julie Ardley, Nemanja Kuzmanović, Philippe de Lajudie, Ridha Mhamdi, Lionel Moulin, Xavier Nesme, Joanna Puławska, Tomasz Stępkowski and Pablo Vinuesa.
4.2. Admissions, Resignations. Mitchell Andrews announced his need to withdraw from the Subcommittee due to recent job change and lack of time to contribute to the sub-committee’s discussions anymore. The Subcommittee will miss him as a very useful and contributive member and, in the name of all members, we thank him for taking his commitment seriously and for all his contributions over the years – they have been genuinely important and much appreciated.
4.3. Chairperson and Secretary elections. Prof. J. Peter W. Young was reappointed as the Chairperson of the Subcommittee and Dr. Seyed Abdollah Mousavi (University of Helsinki, Finland) was appointed as Secretary to serve for a 3 year term starting on 1 September 2020. There was no opposition among members and regular members validated these nominations by their unanimous votes. Philippe de Lajudie, as the current secretary, will inform the secretary of International Committee on Systematics of Prokaryotes (ICSP) subcommittees of this resolution. The members of the Subcommittee wish to record their gratitude to Philippe for all his hard work and devotion to the role of Secretary over the past years. He has been an excellent Secretary and has done a great deal to promote the activities of the Subcommittee.
Minute 5. Following up the progress in resolutions (Minutes 6, 7, 7.1, 7.2) of the previous (2019) meeting
5.1. As decided last year, some members edited information on Rhizobium and Pararhizobium on Wikipedia pages. All members are encouraged to contribute to maintain these general public pages as updated as possible. The Subcommittee blog (https://taxonomyagrorhizo.blogspot.com/) is now available and should also be used to increase interactions and visibility of our recommendations.
5.2. The species table hosted on the Subcommittee website (https://sites.google.com/view/taxonomyagrorhizo/), which lists type strains and links to existing genomic data cannot be maintained daily up-to-date, and this will likely become harder to do as the number of described and sequenced species grow. The LPSN (https://lpsn.dsmz.de/) and GCM (http://gcm.wdcm.org/typestrain/about.jsp) provide more up-to-date information on taxonomy and links to genomic data, so it will be more value for our effort to produce a complementary type of information. It has then been decided to turn the species table into something containing a more specialized type of information, complementary to that provided on the other sites, e.g. the interactions of rhizobia and agrobacteria with plants, including symbiotic/pathogenic aspects, host range, symbiovars/pathovars, plasmid types, etc. For agrobacterial plasmids, the new groupings proposed by Weisberg et al. [3] could be used. The recorded data would aim at reflecting the genotypic/phenotypic diversity observed within the species, rather than just metadata associated with the species type strain. A new template/frame table will be designed by a subgroup of members (L. M., F. L., R. M., S. A. M. and others) so it can later be populated by all members with relevant expertise.
Minute 6. New species, since the last meeting
We commented that proposed names should attempt to best reflect the biology of the new taxa. For instance, we have doubts if, in the case of newly described genera, the suffix ‘rhizobium’ should be used as the root of the name when the bacterium is not present in the soil environment or is simply nonsymbiotic, like the recently proposed genus names Georhizobium [4] and Pseudorhizobium [5, 6]. Similarly, the species name Agrobacterium fabacearum was proposed for Agrobacterium genomic species G1 (5), as it has, by chance, been isolated as an endophyte in bean root nodules, but not specifically as a symbiont. In the past, Agrobacterium G1 strains were isolated from several plant types [7] and detected in soils associated with Poaceae rhizospheres [8]. The plant specificity suggested for the genomic species G1 by the name fabacearum is somehow misleading. As a matter of fact and at the same time, Velázquez et al. [9] published evidence that A. tumefaciens is the correct name for the Agrobacterium genomic species G1, solving the long-standing problem of confusing equivalence with A. radiobacter , which is the correct name for Agrobacterium G4. The name A. tumefaciens has precedence over A. fabacearum and thus should have priority as the valid name for Agrobacterium genomic species G1. In addition, these authors request that the type strain of A. tumefaciens be corrected from ATCC 23308T back to ATCC 4720T, since the original type strain ATCC 4720T was never lost and is currently available in several culture collections. The Subcommittee supports these changes. Table 1 lists the novel taxa.
Table 1.
Species and nomenclatural type strain |
Origin |
T-strain Genome NCBI assembly (RefSeq) accession |
Symbiotic/ pathogenic genes |
Planttests |
Reference |
---|---|---|---|---|---|
Agrobacterium |
|||||
Agrobacterium cavarae RZME10T (=CECT 9795T=LMG 31257T) |
Zea mays L. root, Spain |
GCF_004310285.1 |
– |
– |
[20] |
Agrobacterium fabacearum CNPSo 675T (=UMR 1457T=LMG 31642T) |
Nodules of soybean and common bean in Brazil, Mexico, Ecuador and Mozambique |
GCF_009649785.1 |
vir |
Nod- |
[21] |
'Allorhizobium oryziradicis' comb. nov. N19T (=ACCC 19962T=KCTC 52413T) |
GCF_001939045.1 |
[11, 22] |
|||
Allorhizobium taibaishanense comb. nov. CCNWSX 0483T (=DSM 100021T=HAMBI 3214T) |
GCF_001938985.1 |
[11] |
|||
Allorhizobium terrae CC-HIH110T (=BCRC 80932T=JCM 31228T) |
Paddy soil, Taiwan |
GCF_004801395.1 |
[22] |
||
Bradyrhizobium archetypum WSM 1744T (=CNPSo 4013T=LMG 31646T) |
Root nodule of Muelleranthus trifoliolatus, Western Australia |
GCF_013114835.1 |
nodA, nifD, nifH |
Nod+ |
[23] |
Bradyrhizobium australiense WSM 1791T (=CNPSo 4014T=LMG 31647T) |
Root nodule of Indigofera sp., Western Australia |
GCF_013114825.1 |
nodA, nifD, nifH |
Nod+ |
[23] |
'Bradyrhizobium campsiandrae' UFLA01-1174T (=INPA 394BT=LMG 10099T) |
Root nodule of Campsiandra laurilifolia, Amazon rain forest flooded area, Brazil |
GCF_014529705.1 |
nodA, nifD, nifH |
Nod+ |
[24] |
Bradyrhizobium cosmicum 58S1T (=LMG 31545T=HAMBI 3725T) |
Non-nodulating diazotroph originating from soybean nodule, Canada |
GCF_007290395.1 |
nifD, nifH |
Nod- |
[25] |
Bradyrhizobium hipponense aSej3T (=DSM 108913T=LMG 31020T) |
Root nodule of Lupinus angustifolius, Tunisia |
GCF_008123965.1 |
nodA, nifD, nifH |
Nod+ |
[26] |
Bradyrhizobium murdochi WSM 1741T (=CNPSo 4020T=LMG 31651T) |
Root nodule of Rhynchosia minima, Western Australia |
GCF_000472965.1 |
nodA, nifD, nifH |
Nod+ |
[23] |
Cupriavidus agavae ASC-9842T (=LMG 26414T=CIP 110327T) |
Agave L. rhizosphere in northeast Mexico |
GCF_004217045.1 |
L.+ |
[27] |
|
Devosia ginsengisoli Gsoil 520T (=KACC 19440T=LMG 30329T). |
Ginseng cultivation soil |
GCF_007859655.1 |
[28] |
||
Devosia indica IO390501T (IO390501T=JCM 32636T) |
Sea water sample from the Indian Ocean |
GCF_003056405.1 |
[29] |
||
Devosia marina L53-10-65T (=MCCC 1A05139T=KCTC 72888T) |
Deep seawater, South China Sea |
GCF_009758415.1 |
[30] |
||
Devosia subaequoris HST3-14T (=JCM 14206T=KCTC 12772T) |
Beach sediment sample from Hwasun Beach in Jeju, Republic of Korea |
GCF_014197055.1 |
[30] |
||
[4] |
|||||
Georhizobium profundi WS11T (=MCCC 1K03498T=KCTC 62439T) |
Deep-sea sediment sample collected from the New Britain Trench |
GCF_003952725.1 |
[4] |
||
'Mesorhizobium alexandrii' Z1-4T (=KCTC 72512T=CCTCC AB 2019101T) |
Phycosphere microbiota of marine dinoflagellate Alexandrium minutum |
GCF_004000235.1 |
[31] |
||
'Mesorhizobium rhizophilum' YM1C-6-2T (=CGMCC 1.15487T=DSM 101712T) |
Rhizosphere of maize grown in northeast PR China |
GCF_003666685.1 |
[32] |
||
Mesorhizobium terrae NIBRBAC000500504T (=KCTC 72278T=JCM 33432T) |
Soil in Jangsu, Republic of Korea |
GCF_008727715.1 |
[33] |
||
Methylobacterium crusticola MIMD6T (=KCTC 52305T=MCCC 1K01311T) |
Biological soil crusts, PR China |
GCF_003574465.1 |
[34] |
||
Methylobacterium durans 17SD2-17T (= KCTC 52908T=NBRC 112876T) |
Gamma-ray-irradiated soil, Republic of Korea |
GCF_003173715.1 |
[35] |
||
Methylobacterium nonmethylotrophicum 6 HR-1T (=GDMCC 1.662T=KCTC 42760T) |
Tungsten mine tailings, Jiangxi, PR China |
GCF_004745635.1 |
[36] |
||
Methylobacterium planium YIM 132548T (=CGMCC 1.17323T=NBRC 114056T) |
Lepraria sp. lichen collected from Yunnan, southwest PR China |
GCF_008806345.1 |
[37] |
||
Methylobacterium symbioticum SB0023/3T (=CECT 9862T=PYCC 8351T) |
Spores of the AMF Glomus iranicum var. tenuihypharum |
GCF_902141845.1 |
[38] |
||
'Methylobacterium terrae' 17Sr1-28T (=KCTC 52904T=NBRC 112873T) |
Gamma ray-irradiated soil |
GCF_003173755.1 |
[39, 40] |
||
Methylobacterium terricola 17Sr1-39T (=KACC 52905T=NBRC 112874T) |
Gamma ray-irradiated soil, Republic of Korea |
GCF_006151805.1 |
[41] |
||
Microvirga arsenatis 3D203T (=SYSU G3D203T=CGMCC 1.17691T) |
Hot spring sediment, Tibet, western PR China |
GCF_009910705.1 |
[42] |
||
'Microvirga calopogonii' CCABU 65841T (=LMG 25488T=HAMBI 3033T) |
Root nodule of Calopogonium mucunoides, Yunan, PR China |
GCF_003347665.1 |
nodA, nifH |
Nod- |
[43] |
'Microvirga tunisiensis' LmiM8T (=CECT 9163T=LMG 29689T) |
Lupinus micranthus and L. luteus grown in Northern Tunisia |
GCF_009296195.1 |
nodA, nifH |
Yes |
[44] |
Neorhizobium vignae comb. nov. CCBAU 5176T (=DSM 25378T=HAMBI 3039T) |
GCF_000732195.1 |
[11] |
|||
'Neopararhizobium' |
[11] |
||||
'Neopararhizobium haloflavum' comb. nov. KCTC 52582T (=MCCC 1K03228T=XC0140T) |
GCF_002750855.1 |
[11] |
|||
'Ochrobactrum soli' BO-7T (=KACC 19676T=LMG 30809T) |
Soil of cattle farm, in Seosan, Republic of Korea |
GCF_003664555.1 |
[45] |
||
Ochrobactrum teleogrylli LCB8T (=KCTC 72031T=CGMCC 1.13984T) |
Insect Teleogryllus occipitalis, deserted cropland, Shuangliu, Chengdu, PR China |
GCF_006376685.1 |
[46] |
||
Paraburkholderia agricolaris BaQS159T (DBS0351125T=NCTC 14075T) |
Internal symbionts of spores of Dictyostelium discoideum, eastern USA |
GCF_009455635.1 |
[47] |
||
' Paraburkholderia atlantica ' CNPSo 3155T (=ABIP 236T=LMG 31643T) |
Mimosa pudica and Phaseolus vulgaris grown in soils of the Brazilian Atlantic Forest |
GCF_009362785.1 |
[48] |
||
'Paraburkholderia bonniea' BbQS859T (=DBS0351127T=NCTC 14076T) |
Internal symbionts of spores of Dictyostelium discoideum, eastern USA |
GCF_009455625.1 |
[47] |
||
Paraburkholderia elongata 5NT (=DSM 110722T=LMG 31705T) |
Hemlock forest soil |
GCF_013177735.1 |
[49] |
||
Paraburkholderia flava LD6T (=KACC 21387T=JCM 33640T) |
Forest soil sample in Suwon, Gyeonggi-do, Republic of Korea |
GCF_004359985.1 |
[50] |
||
'Paraburkholderia franconis' CNPSo 3157T (=ABIP 241T=LMG 31644T) |
Mimosa pudica and Phaseolus vulgaris grown in soils of the Brazilian Atlantic Forest |
GCF_009362735.1 |
[48] |
||
'Paraburkholderia hayleyella' BhQS11T (=DBS0351126T=NCTC 14077T) |
Internal symbionts of spores of Dictyostelium discoideum, eastern USA |
GCF_009455685.1 |
[47] |
||
'Paraburkholderia lycopersici' TNe-862T (=LMG 26415T=CIP 110323T) |
N2-fixing, rhizoplane of Lycopersicon esculentum Mill. var. Saladette, Mexico |
GCF_900096975.1 |
[51] |
||
Paraburkholderia madseniana RP11T (=DSM 110123T=LMG 31517T) |
Forest soil following enrichment with 4-Hydroxybenzoic acid |
GCF_009690905.1 |
[49, 52] |
||
Paraburkholderia panacisoli DCY113T (= KCTC 52951T=JCM 32098T) |
Ginseng cultivation soil in Gochang-gun, Republic of Korea |
GCF_008369935.1 |
[53] |
||
Paraburkholderia solitsugae 1NT (=DSM 110721T=LMG 31704T) |
Hemlock forest soil |
na |
[49] |
||
'Paraburkholderia youngii' JPY169T (=LMG 31411T=SARCC751T) |
Brazilian and Mexican Mimosa |
GCA_013366925.1 |
[54] |
||
'Pseudorhizobium banfieldiae' NT-26T (=DSM 106348T=CFBP 8663T) |
Arsenopyrite-containing rock, sub-surface goldmine, Northern Australia |
GCF_000967425.1 |
Nod- |
[5] |
|
'Pseudorhizobium flavum' YW14T (=DSM 102134T=CCTCC AB2013042T) |
Organophosphorus insecticide-contaminated soil |
GCF_902502825.2 |
[5] |
||
'Pseudorhizobium marinum' MGL06T (=DSM 106576T=MCCC 1A00836T) |
Seawater, surface of the South China Sea |
GCF_000705355.1 |
[5] |
||
'Pseudorhizobium endolithicum' JC140T (=DSM 104972T=HAMBI 2447T) |
Sand rock matrix |
GCF_902153245.1 |
[5] |
||
'Pseudorhizobium halotolerans' AB21T (=DSM 105041T=KEMC 224-056T) |
Chloroethylene-contaminated soil, Suwon, Republic of Korea |
GCF_902153235.1 |
[5] |
||
'Rhizobium desertarenae' ADMK78T (=MCC 3400T=KACC 21383T) |
Saline desert soil, Rann of Kachchh, India |
GCF_005860795.2 |
[55] |
||
'Rhizobium deserti' SPY-1T (=ACCC 61627T=JCM 33732T) |
Biological soil crusts, Mu Us Sandy Land, PR China |
GCF_004358025.1 |
[56] |
||
Rhizobium dioscoreae S-93T (=NBRC 114257T=DSM 110498T) |
Endophytic N2-fixing, Dioscorea esculenta L. Miyako Island, Japan |
GCF_009176305.1 |
[57] |
||
Rhizobium mongolense subsp. loessense CGMCC 1.3401T (=DSM 21811T= LMG 21975T) |
GCF_900099775.1 |
[11] |
|||
'Rhizobium oryzihabitans' M15T (=JCM 32903T=ACCC 60121T) |
Rice roots |
GCF_010669145.1 |
[58] |
||
Rhizobium rhizophilum 7209-2T (=CGMCC 1.15691T=DSM 103161T) |
Rhizosphere of Brassica napus L., Mongolia, PR China |
GCF_004912145.1 |
[59] |
||
Rhizobium ruizarguesonis UPM1133T (=CECT 9542T=LMG 30526T) |
Nodules of Pisum sativum plants grown on Ni-rich soils |
GCF_012349115.1 |
[17, 18] |
||
'Rhizobium terrae' NAU-18T (=KCTC 62418T=CCTCC AB 2018075T) |
Oil-contaminated soil, PR China |
GCF_003425685.1 |
[60] |
||
'Trinickia dabaoshanensis' CCTCC M 209109T (GIMN-1.004T=LMG 30479T) |
Heavy-metal-tolerant, Dabaoshan mining area soil, PR China |
[61] |
Minute 7. Recent relevant publications in genome-based taxonomy
7.1. Based on an extensive genomic and phenotypic analysis of the genus Ensifer / Sinorhizobium , Fagorzi et al. [10] concluded that it is made of two distinct clades, with inter-clade genomic similarity under 85 % average nucleotide identity (ANI) and 90 % average amino acid identity (AAI). They presented a large body of biological evidence suggesting that these clades harbour significantly different organisms, with one containing symbiotic strains and the other non-symbiotic strains. Conveniently, the phylogenetic boundary puts the type species and strains of Sinorhizobium and Ensifer in each of these respective clades. This indicates that the genus could be separated (again) into the genera Ensifer and Sinorhizobium , but Fagorzi et al. stop short of making a formal taxonomic proposal, although their findings are supported by several other recent reports [5, 11]. The transfer of Sinorhizobium to Ensifer, proposed 20 years ago [12], was never accepted by the wider scientific community, as witnessed by the tenfold higher number of recent publications using the name Sinorhizobium . Resurrection of the distinction would make biological sense, as it would now separate symbiotic and non-symbiotic clades.
7.2. We discussed the report of Weisberg et al. [3], which mainly focuses on oncogenic plasmids of agrobacteria, including a large set of strains, introducing several interesting new methods of analysis, defining nine distinct plasmid groups, and having potential impacts on taxonomy of these bacteria. Advances in Ti/Ri plasmid analysis are significant, but the classification of the bacteria carrying these plasmids remains unclear. The polyphyletic group agrobacteria (tumorigenic and rhizogenic Rhizobiaceae species) is somehow considered as a taxonomic entity, without considering current evidence that biovar 2 belongs to the genus Rhizobium and biovar 3 to the genus Allorhizobium . It is clear that Ti plasmids are transmissible among several genera in the family Rhizobiaceae , even though transmission events remain rare. Known biovars of agrobacteria remain the main hosts of oncogenic plasmids, with evidence of correlation and stable coexistence between chromosomal backgrounds and Ti plasmids, likely explained by their co-evolution. In this respect it was also recently reported that Ti plasmids can be maintained in Neorhizobium species in nature [13]. In addition, Weisberg et al. [3] suggested that there is a new group of pathogenic agrobacteria that is apparently a sister species of biovar 2. It might be similar to the species Rhizobium tumorigenes , which should be checked when sequences are available.
7.3. Following Ormeño-Orrillo et al. [14], González et al. [15] reported a robust Rhizobium phylogenomic study using ribosomal protein genes that are recommended as phylomarkers. This serves as a framework to analyse the variation profile of the Rhizobium accessory genome and provides evidence on the lateral transfer of symbiotic plasmids, as shown before for the tropici group [16]. This report confirms the misclassification of a number of strains in the NCBI previously reported by several authors.
7.4. Hördt et al. [11] reported an extensive genome-based taxonomic revision of the Alphaproteobacteria , including rhizobia and agrobacteria and extending the family Rhizobiaceae , with relevant proposals at several levels (species, genus, family, order) that will presumably be soon submitted to the International Journal of Systematic and Evolutionary Microbiology (IJSEM) for validation.
7.5. Rhizobium ruizarguesonis [17, 18] is within genospecies C of the R. leguminosarum species complex, so this is now the formal name for genospecies C. There are now five named species within the R. leguminosarum species complex ( R. leguminosarum , R. laguerreae , R. sophorae , R. ruizarguesonis and 'R. indicum') and a recent study indicates that there are more that could be named in future [19].
Minute 8. Adjournment
The meeting was adjourned at 13.17 UTC on 6 July 2020. As usual, it was decided to continue the meeting online until 18 December 2020.
Minute 9. Impact of the Nagoya Protocol on taxonomy
To propose a valid description of a new species name, the type strain needs to be made available freely to the scientific community. Rule 30 [20] of the International Code of Nomenclature of Prokaryotes requires that a viable culture of that strain must be deposited in at least two publicly accessible culture collections in two different countries from which subcultures must be available with no access restriction. Changing these rules has been regularly discussed among scientists in recent years, especially regarding the acceptance of genome sequence availability in replacement of the deposition of a live bacterial culture, referring to the description of taxa not based on isolates, e.g. based on metagenome-derived sequences, which are at the moment restricted to the Candidatus status. At the origin of this requirement of type strain availability for species description is the principle that taxonomy exists to inform biology. Microbiologists should have access to described bacterial cultures, and not only to their genome sequences, to study their biological properties towards increasing knowledge in fundamental research and devising applications of these organisms. Yet, the difficulty remains for a number of authors to describe new species due to genetic resources access regulations in their respective countries, where, in some cases, even the genome sequence cannot be published. Public international culture collections follow the rules of the Nagoya Protocol and acknowledge the sovereign rights and legislation of the country of origin. They can only accept deposits which are obtained in respect of the laws and regulation of the country of origin. Thus, the certificate of deposit can only be issued if type strains are available without restriction, at least for research purposes. In Brazil, for instance, the law allows deposit of strains in collections abroad. However, the law requires foreign researchers to always have an official partnership with a Brazilian institution and Brazilian scientists to perform research on genetic materials from Brazil. In practice, this national regulation requires foreign researchers to sign material transfer agreements (MTAs) or other contracts with Brazilian institutions, which is already considered as a restriction on the distribution of type strains by the ICSP. In several countries, such as Algeria, strains cannot be deposited without restrictions on their distribution, which prevents any new species description in this country. This, of course, is an issue relevant to the taxonomy of all microorganisms, not specifically to those bacteria within the scope of this Subcommittee. The Subcommittee agreed that a solution to the problem needs to be worked out at the level of the national authorities whose rules and regulations are creating problems for their own researchers. It is the responsibility of the latter to explain the rules better to their national authorities and give them a better insight into the situation. If the authorities prohibit deposit of a type strain, then they should be made aware that no new bacteria from their country can be described. This is a loss for the local scientists as well as for science worldwide. If biodiversity is not described and made available beyond national borders, it will not be used and cannot lead to local benefits from use by international partners. All the documentation that public culture collections require from their customers in the framework of the Nagoya Protocol is precisely to ensure that the country of origin is acknowledged and any benefits can be equitably shared. Although in some particular situations some species can indeed be endemic to a single country, most bacterial taxa are likely to be found more widely if efforts are made to look for them. It must be emphasized that the endemic character of a species can be validated and further reinforced for the country of origin only by allowing its comparison (through its type strain) with future descriptions internationally. In the time course of this discussion, the Subcommittee became aware of a working group at the ICSP Executive Board level on type strain accessibility and MTAs attached to type strains. Soon an Editorial should be published in the IJSEM to remind readers what the purpose of a type strain is, and to make updated recommendations (ICSP Executive Board, 29 October 2020, minute 8; www.the-icsp.org/reports).
Minute 10. Closing
The online phase of this meeting was closed on 18 December 2020.
Funding information
The authors received no specific grant from any funding agency.
Conflicts of interest
The authors declare that there are no conflicts of interest.
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