Serotype transmission dynamics and reduced incidence of invasive pneumococcal disease caused by different serotypes after implementation of non-pharmaceutical interventions during COVID-19 pandemic

To block the transmission of severe acute respiratory syndrome coronavirus 2 (SARS-COV-2), a number of non-pharmaceutical interventions (NPIs) are being implemented. Taiwan successfully controlled coronavirus disease 2019 (COVID-19) mainly through NPIs that were centred on facial masking, enhanced hand hygiene, social distancing, international travel controls, effective quarantine and contact-tracing policy [1, 2]. After the first case of COVID-19 was detected on 21 January, 2020, a rise in local demand for surgical masks and N95 respirators was observed and at least 50% of people spontaneously wore a facemask in public places from early February 2020 [3, 4]. Among the total of 799 COVID-19 cases reported in 2020, annual incidence rate of COVID-19 in Taiwan was remarkably low (0.238 per 100 000; n=56) for locally acquired (local) cases and high (3.153 per 100 000; n=743) for internationally acquired (imported) cases (Taiwan CDC, https://data.cdc.gov.tw/en/dataset). It is perceived that NPIs that are currently being implemented to reduce COVID-19 should also prevent both acquisition and transmission of other viral and bacterial respiratory tract infections [5–9]. In this observational study we examined the monthly incidence rates of invasive pneumococcal disease (IPD) and serotype distribution in age groups at high risk and from high pneumococcal transmission settings between January 2020 and February 2021. The differential serotype transmission dynamics revealed by various levels of reduction in IPD caused by different serotypes was discussed.

Short abstract

Significant reduction in the incidence rates of both vaccine and non-vaccine serotype invasive pneumococcal disease among children and adults during the COVID-19 pandemic were observed after the implementation of non-pharmaceutical interventions https://bit.ly/36CAute

To the Editor:

To block the transmission of severe acute respiratory syndrome coronavirus 2 (SARS-COV-2), a number of non-pharmaceutical interventions (NPIs) are being implemented. Taiwan successfully controlled coronavirus disease 2019 (COVID-19) mainly through NPIs that were centred on facial masking, enhanced hand hygiene, social distancing, international travel controls, effective quarantine and contact-tracing policy [1, 2]. After the first case of COVID-19 was detected on 21 January, 2020, a rise in local demand for surgical masks and N95 respirators was observed and at least 50% of people spontaneously wore a facemask in public places from early February 2020 [3, 4]. Among the total of 799 COVID-19 cases reported in 2020, annual incidence rate of COVID-19 in Taiwan was remarkably low (0.238 per 100 000; n=56) for locally acquired (local) cases and high (3.153 per 100 000; n=743) for internationally acquired (imported) cases (Taiwan CDC, https://data.cdc.gov.tw/en/dataset). It is perceived that NPIs that are currently being implemented to reduce COVID-19 should also prevent both acquisition and transmission of other viral and bacterial respiratory tract infections [5‒9]. In this observational study we examined the monthly incidence rates of invasive pneumococcal disease (IPD) and serotype distribution in age groups at high risk and from high pneumococcal transmission settings between January 2020 and February 2021. The differential serotype transmission dynamics revealed by various levels of reduction in IPD caused by different serotypes was discussed.

Data on IPD collected by the Taiwan CDC were used for this analysis. Criteria to determine IPD and statistics on populations of different age groups were performed as described earlier by Lu et al. [10]. IPD incidence was defined as the number of cases divided by the group specific population for each year and expressed as per 100 000 persons. Serotype distribution and IPD incidence rates were calculated for the following five age subgroups: 0–5 years, 6–17 years, 18–50 years, 50–65 years, and ≥65 years. Differences among groups were assessed with the Chi-square test, Fisher's exact test, or Mann–Whitney U-test. A difference with a p-value less than 0.05 was considered significant.

Prior to 2020, IPD incidence rates followed a seasonal pattern (figure 1a); however, from August to December 2020 incidence rates were plateaued around 0.068 per 100 000 per month. A total of 285 IPD cases were detected from January 2020 to February 2021 and the monthly incidence rates significantly decreased between 37% and 77% (p<0.001‒0.05) from February 2020 to January 2021, when compared to the corresponding month in the previous year, except in June when the incidence is usually lower (figure 1a). 3 years prior to the COVID-19 pandemic (2017‒2019), annual IPD incidence rates were highly stable (1.913‒1.932 per 100 000), but reduced significantly from 1.932 per 100 000 (n=456) in 2019 (95% CI 0.127‒0.195 per 100 000 per month) to 0.972 per 100 000 (n=229) in 2020 (95% CI 0.038‒0.124 per 100 000 per month) (p=0.001), corresponding to a 49.7% reduction (figure 1a).

FIGURE 1.

a) Monthly incidence rates of invasive pneumococcal disease (IPD) during 2015–2020 and monthly confirmed cases (local and imported) of coronavirus disease 2019 (COVID-19) between January 2020 and February 2021 in Taiwan. Arrows indicate timeline of non-pharmaceutical interventions implemented. Asterisks indicate significant differences in incidence rate at each month; black asterisks indicate differences between months in 2019 versus the same month in 2020, and red asterisks 2020 versus 2021. b) Changes in the estimated annual incidence rates of IPD in different age groups during 2015–2020. c) Changes in age group-specific incidence of IPD caused by different serotypes during 2019–2020. *: p<0.05, **: p≤0.01; ***: p≤0.001.

Notably, significant reduction (40–67%; p<0.001‒0.05) in IPD incidence rates was observed across all age groups in 2020 (figure 1b). Among the age groups at high risk for IPD, the incidence reduced significantly among children aged <5 years by 46.1% (from 4.61 to 2.49 per 100 000; p=0.014) and in older adults (>65 years) by 47.0% (from 5.38 to 2.85 per 100 000; p<0.001). In high pneumococcal transmission settings like schools, among the primary and secondary school aged children (6–17 years) with mandatory masking when attending classes, IPD cases decreased by 65.5% (from 0.55 to 0.19 per 100 000; p<0.027).

Among children aged <5 years (figure 1b), serotype 19A IPD incidence rate declined remarkably by 86.6% to 0.22 per 100 000 (n=2, p=0.003). IPD caused by non-PCV13 serotypes (15A, 15B, 15C and 23A) also decreased moderately by 27.0%, from 2.87 to 2.05 per 100 000, but the decrease was not statistically significant (p=0.258) (figure 1b). Further analysis revealed that among older adults (>65 years) with highest incidence rate, IPD caused by PCV13 serotypes declined by 54.6% (from 2.38 to 1.08 per 100 000; p<0.001) and non-PCV13 serotypes by 40.8% (from 2.99 to 1.77 per 100 000; p<0.001) (figure 1c). Figure 1c also shows the change in individual serotypes. There were three findings: significant reduction in 19A IPD in both children aged <5 years and adults >50 years; significant reduction in serotype 3 IPD only in the adults aged >50 years; and significant reduction of IPD caused by non-vaccine serotypes 11A, 15A, 23A and others (serogroups 6, 15, 16 and serotypes 7F, 10A) only in the adults and elderly population.

After the first case of COVID-19 was reported on 21 January, 2020, the monthly incidence of IPD significantly decreased from February 2020 to January 2021, indicating that significant IPD incidence rate reduction can be seen within a month after the implementation of NPIs to control COVID-19 (figure 1c). Subsequently, we observed incidence of IPD among children <5 years (mostly attending day care centres) declined substantially by 86.6% in highly invasive serotype 19A IPD and a modest reduction of 39.1% in IPD caused by non-PCV13 serotypes (serogroups 15 and 23A) that emerged in the post-PCV13 era. Because these non-PCV13 serotypes tended to express less invasive potential, the reduction of IPD by these non-PCV13 serotypes was not as prominent as that by 19A. The result suggests that among the vaccinated children, basic COVID-19 control measures can accelerate the elimination of the residual IPD by vaccine serotypes, such as 19A, and simultaneously assist in reducing the transmission of the predominant non-vaccine serotypes. On the other hand, reduction in IPD caused by non-vaccine serotypes 11A, 15A and 23A was more prominent in the adults or elderly, suggesting these non-PCV13 serotypes may be more virulent to the elderly. Another possibility is that these non-vaccine serotypes are mainly carried by children, rather than adults.

The effectiveness of NPIs in a high transmission setting was further evident by near elimination of IPD (only five cases) in 2020 among the school aged children (6–17 years) who were recommended to follow mandatory masking policy when attending classes. The use of facemasks in adult caregivers in day care centres, kindergartens and schools might have reduced the risk of transmission of invasive serotypes to children, thereby reducing IPD. To control the spread of COVID-19, almost all countries with robust healthcare systems have ordered closure of schools at some point of time for a specific duration in 2020, but did not happen in Taiwan during the study period. Winter break was extended by two weeks (11 to 25 February, 2020) for schools as an initial response to reduce the risk of COVID-19 clusters. However, it would be interesting to see IPD surveillance data from countries such as Sweden where facial masks were less used, COVID-19 control measures were less strict, and junior high schools remained open [11].

Among older adults who tended to follow COVID-19 control measures more strictly, IPD incidence rate decreased by 47%, including a significant reduction in IPD due to serotypes 3, 19A and 23A. Although the reduction could be partly linked to indirect effect on IPD in adults after the childhood PCV13 vaccination and 23-valent polysaccharide vaccine (PPV23) use for adults aged ≥75 years [10], such a dramatic reduction within 1 year apparently was related to the NPIs deployed in the pandemic era. In a recent study we failed to detect serotype 3 by culture and PCR from the nasopharynx of children; however, we observed elimination of serotype 3 IPD cases in children (<5 years) and, in contrast, the continued prevalence of serotype 3 IPD in older adults (>65 years), meaning that adults are potential reservoirs for serotype 3 from where adult pneumococcal infections and transmissions to their close contacts can occur [10, 12].

NPIs that were initiated by authorities in January 2020 to reduce transmission of SARS-COV-2 in crowded or enclosed places were recommended throughout the study period. Regular press conferences were held by Taiwan CDC to announce updated policies and measures for residents and competent authorities. Most strikingly, during the study period Taiwan did not impose mandatory stay-at-home orders for residents or lockdowns on cities and regions. In England it was noted that IPD incidence in 2019–2020 was 30% lower, compared to 2018–2019, and IPD incidence rates were found to decline substantially across all age groups during the period March–June 2020 [13], which could be linked to strict lockdowns. Yun et al. [14] reported a 22% decline in IPD incidence in South Korea where severe lockdowns were not implemented, but major outbreaks occurred in cities such as Daegu and Seoul. Recently, Gao et al. [15] reported from Taiwan that the adjusted pneumonia and influenza mortality rate in 2020 was significantly lower than that in 2019. Since nasopharyngeal colonisation with pneumococci precedes IPD, the main limitation of this study was that the nasopharyngeal carriage status in children and adults was not determined during the pandemic.

In conclusion, the study provides us an opportunity to explore the differential serotype transmission dynamics and their invasive potentials among children and adults. Significant reduction in both vaccine and non-vaccine serotype IPD incidence rates among children and adults during the COVID-19 pandemic supports the continued implementation of basic NPIs, such as facial masking, enhanced hand hygiene and social distancing, at least in high transmission risk settings, to reduce viral and bacterial respiratory tract infections, including IPD.

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