The dihedral angle between the aromatic rings in the title compound is 31.84 (8)°; N—H⋯O and C—H⋯O hydrogen bonds and π–π stacking interactions connect molecules in the crystal, producing a three-dimensional network.
Keywords: crystal structure, fluorine, hydrogen bonds, π–π stacking interactions, SQUEEZE, Hirshfeld surface analysis
Abstract
In the title compound, C16H12F5N3O, the dihedral angle between the aromatic rings is 31.84 (8)°. In the crystal, the molecules are linked into dimers possessing crystallographic twofold symmetry by pairwise N—H⋯O hydrogen bonds and weak C—H⋯O hydrogen bonds and aromatic π–π stacking interactions link the dimers into a three-dimensional network. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from F⋯H/H⋯F (41.1%), H⋯H (21.8%), C⋯H/H⋯C (9.7%) C⋯C (7.1%) and O⋯H/H⋯O (7.1%) contacts. The contribution of some disordered solvent to the scattering was removed using the SQUEEZE routine [Spek (2015 ▸). Acta Cryst. C71, 9–18] in PLATON. The solvent contribution was not included in the reported molecular weight and density.
Chemical context
Arylhydrazones containing a (Ph,R)C=N—NHR grouping possess controllable E/Z isomerization around the C=N double bond, which makes them good candidates for the construction of functional materials (Ma et al., 2021 ▸). Control of the supramolecular chemistry of hydrazone ligands and the corresponding complexes may afford multi-dimensional synthons or metallo-organic tectons (Kopylovich et al., 2011 ▸; Gurbanov et al., 2020a
▸). The functionalization of arylhydrazone ligands with groups such as –SO3H, –COOH, –F, –Cl, etc., can improve the catalytic or biological activity of the corresponding coordination compounds (e.g., Shikhaliyev et al., 2019 ▸; Gurbanov et al., 2020b
▸). As part of our ongoing work in this area, we have synthesized the title fluorinated arylhydrazone compound, C16H12F5N3O, and determined its crystal structure and analysed its Hirshfeld surface.
Structural commentary
The title molecule (Fig. 1 ▸) crystallizes in the monoclinic space group C2/c with Z = 8 and has an E conformation with an azomethine N2=C7 double bond length of 1.2880 (16) Å. The backbone of the molecule is non-planar with a dihedral angle of 31.84 (8)° between the C1–C6 pentaflourobenzene and C11–C16 benzene rings and the acetamide group lies almost perpendicular. The C5—C6—C7—N2, C6—C7—N2—N3, C7—N2—N3—C11, N2—N3—C11—C16 and C6—C7—C8—N1 torsion angles are −28.19 (17), 174.02 (10), −176.33 (11), 5.90 (18) and 122.80 (12)°, respectively.
Figure 1.
The title molecule showing 30% probability displacement ellipsoids.
Supramolecular features
In the crystal, the molecules are linked by pairwise N—H⋯O hydrogen bonds (Table 1 ▸), generating dimers featuring an
(12) loop with crystallographic twofold symmetry. The dimers are linked by C—H⋯O hydrogen bonds and aromatic π–π stacking interactions [Cg1⋯Cg1
b
= 3.7137 (10) Å, slippage = 1.158 Å, Cg1⋯Cg2
b
= 3.7015 (9) Å, slippage = 1.407 Å, and Cg1⋯Cg2
a
= 3.7016 (9) Å, slippage = 1.148 Å; where Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively; symmetry codes: (a) 1 − x, y,
− z; (b) 1 − x, 1 − y, 1 − z]. Together, these generate a three-dimensional network (Fig. 2 ▸).
Table 1. Hydrogen-bond geometry (Å, °).
Cg2 is the centroid of the C11–C16 ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N3—H3N⋯O1i | 0.87 (1) | 2.05 (2) | 2.8658 (15) | 154 (1) |
| C14—H14⋯O1ii | 0.93 | 2.45 | 3.377 (2) | 172 |
| C10—H10B⋯Cg2iii | 0.96 | 2.77 | 3.4685 (19) | 130 |
Symmetry codes: (i) -x+1, y, -z+{\script{3\over 2}}; (ii) x-{\script{1\over 2}}, y-{\script{1\over 2}}, z; (iii) -x+{\script{1\over 2}}, -y+{\script{3\over 2}}, -z+1.
Figure 2.
View oblique to [010] of the intermolecular N—H⋯O, C—H⋯O and π–π stacking interactions of the title compound.
Hirshfeld surface analysis
Crystal Explorer 17.5 was used to calculate the Hirshfeld surfaces and two-dimensional fingerprint plots (Turner et al., 2017 ▸). The three-dimensional Hirshfeld surface mapped over d norm in the range −0.52 to 2.23 a.u. is shown in Fig. 3 ▸: the H9C⋯F1, H16⋯F2, F3⋯H10C, H3N⋯O1, N3—H3N⋯O1 and C14—H14⋯O1 interactions, which play a key role in the molecular packing, can be correlated with the bright-red patches near F1, F2, F3 and O1 and hydrogen atoms H3N and H14, which highlight their functions as donors and/or acceptors. This may be compared to the Hirshfeld surface mapped over electrostatic potential (Spackman et al., 2008 ▸) depicted in the supporting information corresponding to positive electrostatic potential (hydrogen-bond donors) in blue and negative electrostatic potential is indicated in red (hydrogen-bond acceptors).
Figure 3.
View of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.52 to 2.23 a.u.
The overall two-dimensional fingerprint map for the title compound is shown in Fig. 4 ▸ a. The percentage contributions to the Hirshfeld surfaces from various interatomic contacts (Table 2 ▸) are F⋯H/H⋯F (41.1%; Fig. 4 ▸ b), H⋯H (21.8%; Fig. 4 ▸ c), C⋯H/H⋯C (9.7%; Fig. 4 ▸ d) C⋯C (7.1%; Fig. 4 ▸ e) and O⋯H/H⋯O (7.1%; Fig. 4 ▸ f). Other contact types including N⋯H/H⋯N, N⋯C/C⋯N and N⋯N contacts account for less than 5.4% of the Hirshfeld surface mapping and presumably have minimal directional impact on the packing.
Figure 4.
Two-dimensional fingerprint plots for the title compound showing (a) all interactions, and delineated into (b) F⋯H/H⋯F, (c) H⋯H, (d) C⋯H/H⋯C, (e) C⋯C and (f) O⋯H/H⋯O interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
Table 2. Percentage contributions of interatomic contacts to the Hirshfeld surface for the title compound.
| Contact | Percentage contribution |
|---|---|
| F⋯H/H⋯F | 41.1 |
| H⋯H | 21.8 |
| C⋯H/H⋯C | 9.7 |
| C⋯C | 7.1 |
| O⋯H/H⋯O | 7.1 |
| F⋯F | 5.4 |
| F⋯C/C⋯F | 4.1 |
| F⋯N/N⋯F | 1.5 |
| N⋯C/C⋯N | 1.1 |
| O⋯O | 0.3 |
| N⋯N | 0.2 |
| O⋯C/C⋯O | 0.2 |
| N⋯H/H⋯N | 0.1 |
Database survey
The five related compounds in the Cambridge Structural Database (CSD Version 5.42, update 1, Feb 2021; Groom et al., 2016 ▸) with a (1E)-1-benzylidene-2-phenylhydrazine skeleton are (E)-3-chloro-N′-(2-fluorobenzylidene)thiophene-2-carbohydrazide (refcode SOJQAL: Sultan et al., 2014 ▸), N′-[1-(2-fluorophenyl)ethylidene]isonicotinohydrazide (HIXRAJ: Sreeja et al., 2014a ▸), (1E,2E)-bis[(thiophen-2-yl)methylidene]hydrazine (MIHROK03: Geiger et al., 2013 ▸), N′-[1-(2-fluorophenyl)ethylidene]nicotinohydrazide (ZISSAX: Sreeja et al., 2014b ▸) and 4-[1-(4-chlorophenyl)-3-oxobutylamino]benzoic acid (TINWIX: Narayana et al., 2007 ▸).
The hydrazide derivative SOJQAL adopts an E conformation with an azomethine N=C double bond length of 1.272 (2) Å. The molecular skeleton is approximately planar, the terminal five- and six-membered rings forming a dihedral angle of 5.47 (9)°. In the crystal, molecules are linked by N—H⋯O and C—H⋯O hydrogen bonds into zigzag chains propagating in [100].
The molecule of HIXRAJ adopts an E conformation with respect to the azomethine bond. The pyridyl and fluorobenzene rings make dihedral angles of 38.58 (6) and 41.61 (5)° respectively with the central C(=O)N2CC unit, resulting in a non-planar molecule. The intermolecular interactions comprise two classical N—H⋯O and N—H⋯N hydrogen bonds and four non-classical C—H⋯O and C—H⋯F hydrogen bonds. These interactions are augmented by a weak π–π interaction between the benzene and pyridyl rings of neighbouring molecules, with a centroid–centroid distance of 3.9226 (10) Å. This leads to a three-dimensional supramolecular assembly in the crystal.
The asymmetric unit of MIHROK03 comprises two independent half-molecules, each residing on a centre of symmetry. The two molecules are essentially planar. In the crystal, weak C—H⋯π interactions join the two symmetry-independent molecules into interlinked chains parallel to [011].
The molecule of ZISSAX adopts an E conformation with respect to the azomethine double bond whereas the N and methyl C atoms are in a Z conformation with respect to the same bond. The ketonic O and azomethine N atoms are cis to each other. The non-planar molecule [the dihedral angle between the benzene rings is 7.44 (11)°] exists in an amido form with a C=O bond length of 1.221 (2) Å. In the crystal, a bifurcated N—H⋯(O,N) hydrogen bond is formed between the amide H atom and the keto O and imine N atoms of an adjacent molecule, leading to the formation of chains propagating along the b-axis direction.
In TINWIX, the aromatic rings are almost perpendicular, making a dihedral angle of 89.26 (5)°. The carboxyl group is coplanar with the aromatic ring to which it is attached [dihedral angle = 1.70 (17)°]. The packing involves inversion-symmetric dimers bridged via hydrogen bonding of the carboxyl groups. In addition, there is an N—H⋯O hydrogen bond between the amino group and the carbonyl O atom.
Synthesis and crystallization
A 20 ml screw-neck vial was charged with DMSO (10 ml), (E)-1-[(perfluorophenyl)methylene]-2-phenylhydrazine (286 mg, 1.00 mmol), tetramethylethylenediamine (TMEDA) (295 mg, 2.50 mmol), CuCl (2 mg, 0.02 mmol) and CCl4 (20 mmol, 10 equiv). After 1–3 h (until TLC analysis showed complete consumption of the corresponding Schiff base), the reaction mixture was poured into a 0.01 M solution of HCl (100 ml, pH = 2–3), and extracted with dichloromethane (3 × 20 ml). The combined organic phase was washed with water (3 × 50 ml), brine (30 ml), dried over anhydrous Na2SO4 and concentrated in vacuo using a rotary evaporator. The residue was purified by column chromatography on silica gel using appropriate mixtures of hexane and dichloromethane (3/1–1/1). Colourless prisms of the title compound suitable for X-ray analysis were obtained by slow evaporation of a dichloromethane solution (69%); m.p. 405 K. Analysis calculated for C16H12F5N3O: C 53.79, H 3.39, N 11.76; found: C 53.73, H 3.36, N 11.71%. 1H NMR (300MHz, CDCl3) δ 3.04 (6H, NMe2), 6.50–7.33 (5H, Ar). 13C NMR (75MHz, CDCl3) δ 33.58, 108.97, 116.87, 120.75, 124.11, 124.76, 140.95, 146.33, 149.87, 150.91, 155.21. ESI–MS: m/z: 358.24 [M + H]+.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The H atom of the NH group was found from a difference-Fourier map and refined freely. All H atoms bonded to C atoms were positioned geometrically and treated as riding atoms, with C—H = 0.93 or 0.96 Å, and with U iso(H) = 1.2 or 1.5U eq (C). The residual electron density was difficult to model and therefore the SQUEEZE routine (Spek, 2015 ▸) in PLATON (Spek, 2020 ▸) was used to remove the contribution of the electron density in the solvent region from the intensity data and the solvent-free model was employed for the final refinement. The solvent formula mass and unit-cell characteristics were not taken into account during refinement. The cavity of volume ca 255.0 Å3 (ca 7.6% of the unit-cell volume) contains approximately three electrons.
Table 3. Experimental details.
| Crystal data | |
| Chemical formula | C16H12F5N3O |
| M r | 357.29 |
| Crystal system, space group | Monoclinic, C2/c |
| Temperature (K) | 296 |
| a, b, c (Å) | 19.0048 (6), 11.5216 (4), 17.2227 (6) |
| β (°) | 116.526 (1) |
| V (Å3) | 3374.2 (2) |
| Z | 8 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.13 |
| Crystal size (mm) | 0.86 × 0.76 × 0.32 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan (SADABS; Krause et al., 2015 ▸) |
| T min, T max | 0.666, 0.746 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 20072, 3619, 3075 |
| R int | 0.025 |
| (sin θ/λ)max (Å−1) | 0.639 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.044, 0.129, 1.08 |
| No. of reflections | 3619 |
| No. of parameters | 232 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.27, −0.16 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989021007349/hb7979sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021007349/hb7979Isup2.hkl
Electrostatic potential map. DOI: 10.1107/S2056989021007349/hb7979sup3.docx
Supporting information file. DOI: 10.1107/S2056989021007349/hb7979Isup4.cml
CCDC reference: 1878189
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The author’s contributions are as follows: Conceptualization, NQS, MA and SM; synthesis and characterization, NQS, UFA and AAN; X-ray analysis, ZA and MA; writing (original draft), ZA, MA and SM; writing (review and editing of the manuscript), ZA, MA and SM; funding acquisition, NQS, UFA and AAN; supervision, MA and SM.
supplementary crystallographic information
Crystal data
| C16H12F5N3O | F(000) = 1456 |
| Mr = 357.29 | Dx = 1.407 Mg m−3 |
| Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 19.0048 (6) Å | Cell parameters from 9937 reflections |
| b = 11.5216 (4) Å | θ = 3.0–30.5° |
| c = 17.2227 (6) Å | µ = 0.13 mm−1 |
| β = 116.526 (1)° | T = 296 K |
| V = 3374.2 (2) Å3 | Prism, colourless |
| Z = 8 | 0.86 × 0.76 × 0.32 mm |
Data collection
| Bruker APEXII CCD diffractometer | 3075 reflections with I > 2σ(I) |
| φ and ω scans | Rint = 0.025 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 27.0°, θmin = 3.0° |
| Tmin = 0.666, Tmax = 0.746 | h = −24→24 |
| 20072 measured reflections | k = −14→14 |
| 3619 independent reflections | l = −21→21 |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.044 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.129 | w = 1/[σ2(Fo2) + (0.066P)2 + 1.0984P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.08 | (Δ/σ)max < 0.001 |
| 3619 reflections | Δρmax = 0.27 e Å−3 |
| 232 parameters | Δρmin = −0.16 e Å−3 |
| 1 restraint |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.57129 (9) | 0.67608 (14) | 0.56090 (9) | 0.0560 (4) | |
| C2 | 0.62879 (10) | 0.6234 (2) | 0.54530 (11) | 0.0709 (5) | |
| C3 | 0.64867 (9) | 0.5107 (2) | 0.57013 (12) | 0.0741 (6) | |
| C4 | 0.61080 (9) | 0.45216 (16) | 0.60894 (11) | 0.0675 (5) | |
| C5 | 0.55429 (8) | 0.50569 (13) | 0.62548 (9) | 0.0526 (3) | |
| C6 | 0.53295 (7) | 0.62075 (12) | 0.60236 (8) | 0.0441 (3) | |
| C7 | 0.47580 (7) | 0.68280 (11) | 0.62380 (7) | 0.0396 (3) | |
| C8 | 0.49138 (7) | 0.81069 (11) | 0.64576 (8) | 0.0405 (3) | |
| C9 | 0.44817 (14) | 1.00857 (16) | 0.61948 (15) | 0.0898 (6) | |
| H9A | 0.503442 | 1.022817 | 0.652886 | 0.135* | |
| H9B | 0.420993 | 1.030799 | 0.652629 | 0.135* | |
| H9C | 0.428581 | 1.053157 | 0.566896 | 0.135* | |
| C10 | 0.36406 (10) | 0.85441 (17) | 0.52042 (11) | 0.0755 (5) | |
| H10A | 0.363739 | 0.772275 | 0.510888 | 0.113* | |
| H10B | 0.363100 | 0.895011 | 0.471289 | 0.113* | |
| H10C | 0.318605 | 0.875319 | 0.527986 | 0.113* | |
| C11 | 0.31918 (7) | 0.60410 (11) | 0.67138 (7) | 0.0409 (3) | |
| C12 | 0.27412 (8) | 0.65818 (13) | 0.70541 (9) | 0.0505 (3) | |
| H12 | 0.281692 | 0.736455 | 0.720011 | 0.061* | |
| C13 | 0.21793 (9) | 0.59576 (16) | 0.71764 (11) | 0.0635 (4) | |
| H13 | 0.187876 | 0.632183 | 0.740795 | 0.076* | |
| C14 | 0.20605 (9) | 0.48080 (17) | 0.69601 (11) | 0.0698 (5) | |
| H14 | 0.167784 | 0.439171 | 0.703856 | 0.084* | |
| C15 | 0.25111 (10) | 0.42742 (15) | 0.66262 (11) | 0.0678 (4) | |
| H15 | 0.243095 | 0.349161 | 0.648076 | 0.081* | |
| C16 | 0.30814 (9) | 0.48750 (13) | 0.65015 (9) | 0.0530 (3) | |
| H16 | 0.338580 | 0.450219 | 0.627863 | 0.064* | |
| N1 | 0.43528 (7) | 0.88584 (11) | 0.59834 (8) | 0.0539 (3) | |
| N2 | 0.42258 (6) | 0.62135 (9) | 0.63136 (6) | 0.0417 (3) | |
| N3 | 0.37406 (6) | 0.67219 (10) | 0.65833 (7) | 0.0450 (3) | |
| O1 | 0.55445 (5) | 0.84009 (8) | 0.70599 (6) | 0.0477 (2) | |
| F1 | 0.55220 (7) | 0.78590 (9) | 0.53338 (7) | 0.0777 (3) | |
| F2 | 0.66439 (8) | 0.68233 (13) | 0.50601 (9) | 0.1088 (5) | |
| F3 | 0.70507 (6) | 0.45858 (14) | 0.55668 (9) | 0.1114 (5) | |
| F4 | 0.62894 (7) | 0.34098 (10) | 0.63199 (9) | 0.0994 (4) | |
| F5 | 0.52239 (6) | 0.44377 (8) | 0.66683 (7) | 0.0724 (3) | |
| H3N | 0.3875 (9) | 0.7382 (12) | 0.6861 (10) | 0.054 (4)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0493 (8) | 0.0732 (10) | 0.0498 (7) | −0.0048 (7) | 0.0261 (6) | −0.0096 (7) |
| C2 | 0.0543 (9) | 0.1071 (15) | 0.0627 (9) | −0.0149 (9) | 0.0364 (8) | −0.0285 (9) |
| C3 | 0.0426 (8) | 0.1094 (15) | 0.0668 (10) | 0.0056 (9) | 0.0212 (7) | −0.0389 (10) |
| C4 | 0.0506 (8) | 0.0744 (11) | 0.0600 (9) | 0.0171 (7) | 0.0089 (7) | −0.0206 (8) |
| C5 | 0.0418 (7) | 0.0594 (8) | 0.0477 (7) | 0.0051 (6) | 0.0121 (6) | −0.0074 (6) |
| C6 | 0.0334 (6) | 0.0566 (7) | 0.0379 (6) | 0.0006 (5) | 0.0120 (5) | −0.0064 (5) |
| C7 | 0.0327 (6) | 0.0469 (7) | 0.0363 (6) | 0.0012 (5) | 0.0127 (4) | 0.0019 (5) |
| C8 | 0.0371 (6) | 0.0464 (7) | 0.0414 (6) | 0.0012 (5) | 0.0205 (5) | 0.0072 (5) |
| C9 | 0.1062 (16) | 0.0507 (9) | 0.0990 (15) | 0.0159 (10) | 0.0337 (12) | 0.0198 (9) |
| C10 | 0.0611 (10) | 0.0881 (12) | 0.0561 (9) | 0.0207 (9) | 0.0070 (7) | 0.0169 (8) |
| C11 | 0.0315 (6) | 0.0488 (7) | 0.0371 (6) | −0.0040 (5) | 0.0106 (5) | 0.0028 (5) |
| C12 | 0.0396 (6) | 0.0577 (8) | 0.0542 (7) | 0.0002 (6) | 0.0211 (6) | 0.0032 (6) |
| C13 | 0.0446 (7) | 0.0856 (11) | 0.0660 (9) | 0.0030 (7) | 0.0299 (7) | 0.0159 (8) |
| C14 | 0.0475 (8) | 0.0849 (12) | 0.0746 (10) | −0.0139 (8) | 0.0250 (7) | 0.0232 (9) |
| C15 | 0.0670 (10) | 0.0552 (9) | 0.0730 (10) | −0.0188 (7) | 0.0239 (8) | 0.0062 (7) |
| C16 | 0.0527 (8) | 0.0511 (8) | 0.0533 (7) | −0.0072 (6) | 0.0220 (6) | −0.0016 (6) |
| N1 | 0.0531 (7) | 0.0507 (7) | 0.0530 (7) | 0.0100 (5) | 0.0193 (5) | 0.0129 (5) |
| N2 | 0.0340 (5) | 0.0477 (6) | 0.0415 (5) | −0.0013 (4) | 0.0152 (4) | −0.0029 (4) |
| N3 | 0.0406 (6) | 0.0448 (6) | 0.0540 (6) | −0.0072 (4) | 0.0250 (5) | −0.0087 (5) |
| O1 | 0.0402 (5) | 0.0487 (5) | 0.0521 (5) | −0.0068 (4) | 0.0186 (4) | 0.0037 (4) |
| F1 | 0.0964 (8) | 0.0791 (7) | 0.0827 (7) | −0.0027 (6) | 0.0624 (6) | 0.0109 (5) |
| F2 | 0.1025 (9) | 0.1503 (12) | 0.1183 (10) | −0.0331 (8) | 0.0893 (8) | −0.0381 (9) |
| F3 | 0.0624 (7) | 0.1649 (13) | 0.1112 (9) | 0.0196 (7) | 0.0426 (6) | −0.0552 (9) |
| F4 | 0.0920 (8) | 0.0804 (8) | 0.1078 (9) | 0.0392 (6) | 0.0285 (7) | −0.0140 (6) |
| F5 | 0.0759 (6) | 0.0556 (5) | 0.0884 (7) | 0.0128 (4) | 0.0389 (5) | 0.0134 (5) |
Geometric parameters (Å, º)
| C1—F1 | 1.3430 (19) | C9—H9C | 0.9600 |
| C1—C2 | 1.377 (2) | C10—N1 | 1.463 (2) |
| C1—C6 | 1.383 (2) | C10—H10A | 0.9600 |
| C2—F2 | 1.336 (2) | C10—H10B | 0.9600 |
| C2—C3 | 1.367 (3) | C10—H10C | 0.9600 |
| C3—F3 | 1.3359 (18) | C11—C12 | 1.3832 (19) |
| C3—C4 | 1.360 (3) | C11—C16 | 1.3835 (19) |
| C4—F4 | 1.340 (2) | C11—N3 | 1.4011 (16) |
| C4—C5 | 1.374 (2) | C12—C13 | 1.380 (2) |
| C5—F5 | 1.3301 (18) | C12—H12 | 0.9300 |
| C5—C6 | 1.392 (2) | C13—C14 | 1.367 (3) |
| C6—C7 | 1.4783 (17) | C13—H13 | 0.9300 |
| C7—N2 | 1.2880 (16) | C14—C15 | 1.372 (3) |
| C7—C8 | 1.5172 (18) | C14—H14 | 0.9300 |
| C8—O1 | 1.2317 (15) | C15—C16 | 1.381 (2) |
| C8—N1 | 1.3325 (16) | C15—H15 | 0.9300 |
| C9—N1 | 1.453 (2) | C16—H16 | 0.9300 |
| C9—H9A | 0.9600 | N2—N3 | 1.3385 (14) |
| C9—H9B | 0.9600 | N3—H3N | 0.873 (13) |
| F1—C1—C2 | 117.32 (15) | N1—C10—H10B | 109.5 |
| F1—C1—C6 | 119.67 (13) | H10A—C10—H10B | 109.5 |
| C2—C1—C6 | 123.01 (17) | N1—C10—H10C | 109.5 |
| F2—C2—C3 | 120.62 (16) | H10A—C10—H10C | 109.5 |
| F2—C2—C1 | 120.0 (2) | H10B—C10—H10C | 109.5 |
| C3—C2—C1 | 119.34 (17) | C12—C11—C16 | 119.99 (12) |
| F3—C3—C4 | 120.3 (2) | C12—C11—N3 | 117.50 (12) |
| F3—C3—C2 | 120.2 (2) | C16—C11—N3 | 122.50 (12) |
| C4—C3—C2 | 119.47 (14) | C13—C12—C11 | 119.85 (14) |
| F4—C4—C3 | 119.80 (16) | C13—C12—H12 | 120.1 |
| F4—C4—C5 | 119.29 (18) | C11—C12—H12 | 120.1 |
| C3—C4—C5 | 120.90 (17) | C14—C13—C12 | 120.56 (16) |
| F5—C5—C4 | 117.09 (14) | C14—C13—H13 | 119.7 |
| F5—C5—C6 | 121.33 (12) | C12—C13—H13 | 119.7 |
| C4—C5—C6 | 121.55 (15) | C13—C14—C15 | 119.37 (14) |
| C1—C6—C5 | 115.69 (13) | C13—C14—H14 | 120.3 |
| C1—C6—C7 | 121.43 (13) | C15—C14—H14 | 120.3 |
| C5—C6—C7 | 122.82 (12) | C14—C15—C16 | 121.37 (16) |
| N2—C7—C6 | 117.21 (12) | C14—C15—H15 | 119.3 |
| N2—C7—C8 | 125.67 (11) | C16—C15—H15 | 119.3 |
| C6—C7—C8 | 116.65 (10) | C15—C16—C11 | 118.85 (15) |
| O1—C8—N1 | 123.28 (12) | C15—C16—H16 | 120.6 |
| O1—C8—C7 | 119.03 (11) | C11—C16—H16 | 120.6 |
| N1—C8—C7 | 117.68 (11) | C8—N1—C9 | 118.65 (14) |
| N1—C9—H9A | 109.5 | C8—N1—C10 | 124.09 (13) |
| N1—C9—H9B | 109.5 | C9—N1—C10 | 116.99 (14) |
| H9A—C9—H9B | 109.5 | C7—N2—N3 | 119.24 (11) |
| N1—C9—H9C | 109.5 | N2—N3—C11 | 119.22 (11) |
| H9A—C9—H9C | 109.5 | N2—N3—H3N | 119.5 (10) |
| H9B—C9—H9C | 109.5 | C11—N3—H3N | 117.2 (11) |
| N1—C10—H10A | 109.5 | ||
| F1—C1—C2—F2 | 1.5 (2) | C5—C6—C7—N2 | −28.19 (17) |
| C6—C1—C2—F2 | −179.03 (14) | C1—C6—C7—C8 | −32.65 (16) |
| F1—C1—C2—C3 | −178.29 (14) | C5—C6—C7—C8 | 144.48 (12) |
| C6—C1—C2—C3 | 1.2 (2) | N2—C7—C8—O1 | 114.61 (14) |
| F2—C2—C3—F3 | 1.2 (2) | C6—C7—C8—O1 | −57.36 (15) |
| C1—C2—C3—F3 | −179.06 (14) | N2—C7—C8—N1 | −65.23 (16) |
| F2—C2—C3—C4 | −179.10 (15) | C6—C7—C8—N1 | 122.80 (12) |
| C1—C2—C3—C4 | 0.7 (2) | C16—C11—C12—C13 | −0.4 (2) |
| F3—C3—C4—F4 | −1.5 (2) | N3—C11—C12—C13 | 178.48 (12) |
| C2—C3—C4—F4 | 178.76 (14) | C11—C12—C13—C14 | −0.3 (2) |
| F3—C3—C4—C5 | 178.08 (13) | C12—C13—C14—C15 | 0.6 (2) |
| C2—C3—C4—C5 | −1.7 (2) | C13—C14—C15—C16 | −0.2 (3) |
| F4—C4—C5—F5 | 2.3 (2) | C14—C15—C16—C11 | −0.5 (2) |
| C3—C4—C5—F5 | −177.31 (13) | C12—C11—C16—C15 | 0.7 (2) |
| F4—C4—C5—C6 | −179.60 (13) | N3—C11—C16—C15 | −178.03 (13) |
| C3—C4—C5—C6 | 0.8 (2) | O1—C8—N1—C9 | −1.2 (2) |
| F1—C1—C6—C5 | 177.51 (12) | C7—C8—N1—C9 | 178.61 (14) |
| C2—C1—C6—C5 | −2.0 (2) | O1—C8—N1—C10 | 172.55 (14) |
| F1—C1—C6—C7 | −5.2 (2) | C7—C8—N1—C10 | −7.6 (2) |
| C2—C1—C6—C7 | 175.37 (13) | C6—C7—N2—N3 | 174.02 (10) |
| F5—C5—C6—C1 | 179.00 (12) | C8—C7—N2—N3 | 2.09 (18) |
| C4—C5—C6—C1 | 0.95 (19) | C7—N2—N3—C11 | −176.33 (11) |
| F5—C5—C6—C7 | 1.72 (19) | C12—C11—N3—N2 | 175.29 (11) |
| C4—C5—C6—C7 | −176.33 (12) | C16—C11—N3—N2 | −5.90 (18) |
| C1—C6—C7—N2 | 154.68 (12) |
Hydrogen-bond geometry (Å, º)
Cg2 is the centroid of the C11–C16 ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N3—H3N···O1i | 0.87 (1) | 2.05 (2) | 2.8658 (15) | 154 (1) |
| C9—H9A···O1 | 0.96 | 2.33 | 2.717 (2) | 103 |
| C10—H10A···N2 | 0.96 | 2.55 | 3.194 (2) | 124 |
| C14—H14···O1ii | 0.93 | 2.45 | 3.377 (2) | 172 |
| C10—H10B···Cg2iii | 0.96 | 2.77 | 3.4685 (19) | 130 |
Symmetry codes: (i) −x+1, y, −z+3/2; (ii) x−1/2, y−1/2, z; (iii) −x+1/2, −y+3/2, −z+1.
Funding Statement
This work was funded by Science Development Foundation under the President of the Republic of Azerbaijan grant EIF-BGM-4- RFTF-1/2017-21/13/4.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989021007349/hb7979sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021007349/hb7979Isup2.hkl
Electrostatic potential map. DOI: 10.1107/S2056989021007349/hb7979sup3.docx
Supporting information file. DOI: 10.1107/S2056989021007349/hb7979Isup4.cml
CCDC reference: 1878189
Additional supporting information: crystallographic information; 3D view; checkCIF report




