The pyran ring is modestly non-planar while the tetrahydrodiazepine ring adopts a boat conformation. In the crystal, N—H⋯O hydrogen bonds and slipped π–π stacking interactions build a three-dimensional network structure.
Keywords: crystal structure, pyrandione, furan, tetrahydrobenzodiazepine, hydrogen bond, π-stacking
Abstract
The title compound {systematic name: (S,E)-3-[4-(furan-2-yl)-2,3,4,5-tetrahydro-1H-benzo[b][1,4]diazepin-2-ylidene]-6-methyl-2H-pyran-2,4(3H)-dione}, C19H16N2O4, is constructed from a benzodiazepine ring system linked to furan and pendant dihydropyran rings, where the benzene and furan rings are oriented at a dihedral angle of 48.7 (2)°. The pyran ring is modestly non-planar [largest deviation of 0.029 (4) Å from the least-squares plane] while the tetrahydrodiazepine ring adopts a boat conformation. The rotational orientation of the pendant dihydropyran ring is partially determined by an intramolecular N—HDiazp⋯ODhydp (Diazp = diazepine and Dhydp = dihydropyran) hydrogen bond. In the crystal, layers of molecules parallel to the bc plane are formed by N—HDiazp⋯ODhydp hydrogen bonds and slipped π–π stacking interactions. The layers are connected by additional slipped π–π stacking interactions. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (46.8%), H⋯O/O⋯H (23.5%) and H⋯C/C⋯H (15.8%) interactions, indicating that van der Waals interactions are the dominant forces in the crystal packing. Computational chemistry indicates that in the crystal the N—H⋯O hydrogen-bond energy is 57.5 kJ mol−1.
Chemical context
1,5-Benzodiazepine derivatives are an important class of nitrogen-containing heterocyclic compounds because of their potent biological activities, acting as antidepressant (Sharma et al., 2017 ▸), antitubercular (Singh et al., 2017 ▸), antimicrobial (An et al., 2016 ▸) and anticonvulsant agents (Jyoti & Mithlesh, 2013 ▸). Many synthetic methodologies have been developed to access this type of compound (Sebhaoui et al., 2017 ▸; Chkirate et al., 2018 ▸).
The present study continues the investigation of 1,5-benzodiazepine derivatives recently published by our team (El Ghayati et al., 2019 ▸, 2021 ▸; Essaghouani et al., 2016 ▸, 2017 ▸). In this context, we report herein the synthesis, the molecular and crystal structures along with the Hirshfeld surface analysis and the intermolecular interaction energies of the title compound, (I).
Structural commentary
The O1/C10–C14 pyran ring is not planar and a puckering analysis (Cremer & Pople, 1975 ▸) yielded the parameters Q = 0.082 (4) Å, θ = 114 (3)° and φ = 70 (3)°, thus indicating it adopts a slightly twisted envelope conformation with C10 at the tip of the flap. In the seven-membered ring, N1 and N2 are displaced from the C1–C6 plane by 0.159 (6) and 0.158 (6) Å, respectively, in the direction away from C8 (Fig. 1 ▸). A puckering analysis of the seven-membered ring gave the parameters Q(2) = 0.915 (4) Å, Q(3) = 0.187 (4) Å, φ(2) = 38.9 (2)° and φ(3) = 156.3 (12)° [total puckering amplitude Q = 0.933 (4) Å]. This ring adopts a boat conformation. The mean plane of the O1/C10–C14 ring is inclined to that of the C1–C6 ring by 34.8 (1)°, while the C1–C6 and O4/C16–C19 rings make a dihedral angle of 48.7 (2)°. The orientation of the O1/C10–C14 ring is partially determined by an intramolecular N1—H1⋯O2 hydrogen bond (Table 1 ▸, Fig. 1 ▸). All bond lengths and angles in the molecule of (I) are in the expected ranges.
Figure 1.
The molecule of (I) with the atom-numbering scheme and displacement ellipsoids drawn at the 50% probability level. The intramolecular hydrogen bond is depicted by a dashed line.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N1—H1⋯O2 | 0.91 (1) | 1.72 (3) | 2.538 (4) | 148 (4) |
| N2—H2A⋯O3vi | 0.91 (1) | 2.20 (2) | 3.079 (4) | 162 (5) |
Symmetry code: (vi) -x+1, y-{\script{1\over 2}}, -z+{\script{1\over 2}}.
Supramolecular features
In the crystal, N—HDiazp⋯ODhydp (Diazp = diazepine and Dhydp = dihydropyran) hydrogen bonds (Table 1 ▸) form helical chains of molecules extending along the b-axis direction. The chains are reinforced by slipped π–π stacking interactions between furan and pyran rings within the chains [centroid⋯centroid(−x + 1, y +
, −z +
) distance = 3.610 (2) Å, dihedral angle = 4.4 (2)°, slippage = 1.14 Å]. The chains are connected into layers parallel to the bc plane by analogous π–π stacking interactions (Fig. 2 ▸) [centroid⋯centroid(−x + 1, y −
, −z +
) distance = 3.610 (2) Å, dihedral angle = 4.4 (2)°, slippage = 1.38 Å]. The layers are connected by slipped π–π stacking interactions between inversion-related C1–C6 rings [centroid⋯centroid (−x + 1, −y, −z + 1) distance = 3.690 (2) Å, slippage = 1.47 Å] (Fig. 3 ▸).
Figure 2.
Portions of two chains viewed along the c axis direction with N—H⋯O hydrogen bonds and slipped π–π stacking interactions depicted, respectively, by violet and orange dashed lines.
Figure 3.
Packing viewed along the a-axis direction with intermolecular interactions depicted as in Fig. 2 ▸.
Hirshfeld surface analysis
In order to visualize the intermolecular interactions in the crystal of (I), a Hirshfeld surface (HS) analysis (Hirshfeld, 1977 ▸) was carried out using Crystal Explorer 17.5 (Turner et al., 2017 ▸). In the HS plotted over d norm (Fig. 4 ▸ a), the white surface indicates contacts with distances equal to the sum of van der Waals radii, and the red and blue colours indicate distances shorter or longer than the van der Waals radii, respectively (Venkatesan et al., 2016 ▸). The bright-red spots appearing near O3 and hydrogen atom H2A indicate their roles as the respective donor and/or acceptor atoms in hydrogen bonding. They also appear as blue and red regions corresponding to positive and negative potentials on the HS mapped over electrostatic potential (Spackman et al., 2008 ▸; Jayatilaka et al., 2005 ▸) as shown in Fig. 4 ▸ b. The blue regions indicate the positive electrostatic potential (hydrogen-bond donors), while the red regions indicate the negative electrostatic potential (hydrogen-bond acceptors). The shape-index of the HS is a tool to visualize the π–π stacking by the presence of adjacent red and blue triangles. Fig. 4 ▸ c clearly suggests that there are π–π interactions in (I). The overall two-dimensional fingerprint plot, Fig. 5 ▸ a, and those delineated into H⋯H, H⋯O/O⋯H, H⋯C/C⋯H, C⋯C, H⋯N/N⋯H, C⋯ O/O⋯C and O⋯O contacts (McKinnon et al., 2007 ▸) are illustrated in Fig. 5 ▸ b–h, respectively, together with their relative contributions to the Hirshfeld surface. The most important interaction is H⋯H (Table 2 ▸) contributing 46.8% to the overall crystal packing, which is reflected in Fig. 5 ▸ b as widely scattered points of high density due to the large hydrogen content of the molecule with the tip at d e = d i = 1.07 Å. The pair of scattered points of spikes in the fingerprint plot delineated into H⋯O/O⋯H contacts (23.5% contribution to the HS,Fig. 5 ▸ c; Table 2 ▸) have the tips at d e + d i = 2.09 Å. In the absence of C—H⋯π interactions, the pair of characteristic wings in the fingerprint plot delineated into H⋯C/C⋯H contacts (Fig. 5 ▸ d, 15.8%) have tips at d e + d i = 2.95 Å. The C⋯C contacts (Fig. 5 ▸ e, 7.4%) have an arrow-shaped distribution of points with its tip at d e = d i = 1.65 Å. The H⋯N/N⋯H contacts (Fig. 5 ▸ f, 2.8%) have tips at d e + d i = 2.78 Å. Finally, the C⋯O/O⋯C (Fig. 5 ▸ g) and O⋯O (Fig. 5 ▸ h) contacts (2.4% and 1.3% contributions, respectively, to the HS) appear with tips at d e + d i = 3.50 Å and d e = d i = 1.73 Å, respectively.
Figure 4.
(a) View of the three-dimensional Hirshfeld surface of the title compound, plotted over d norm in the range of −0.3842 to 1.4934 a.u., (b) view of the three-dimensional Hirshfeld surface of the title compound plotted over electrostatic potential energy in the range −0.0500 to 0.0500 a.u. using the STO-3 G basis set at the Hartree–Fock level of theory and (c) Hirshfeld surface of the title compound plotted over shape-index.
Figure 5.
The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) H⋯O/O⋯H, (d) H⋯C/C⋯H, (e) C⋯C, (f) H⋯N/N⋯H, (g) C⋯O/O⋯C and (h) O⋯O interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
Table 2. Selected interatomic distances (Å).
| O2⋯N1 | 2.537 (4) | N1⋯N2 | 2.865 (4) |
| O3⋯C8 | 2.856 (4) | C4⋯C6iii | 3.387 (5) |
| O3⋯N2i | 3.079 (4) | C14⋯C16i | 3.407 (5) |
| O4⋯N2 | 2.955 (5) | C1⋯H8A | 2.68 |
| O2⋯H12ii | 2.74 | C6⋯H8A | 2.59 |
| O2⋯H3iii | 2.62 | C11⋯H1 | 2.28 (3) |
| O2⋯H1 | 1.72 (3) | C14⋯H2A i | 2.79 (4) |
| O3⋯H2A i | 2.20 (4) | C14⋯H8B | 2.64 |
| H15C⋯O3iv | 2.70 | H2⋯H2A | 2.29 |
| O3⋯H2i | 2.68 | H2⋯H17vi | 2.33 |
| O3⋯H8B | 2.23 | H3⋯H17vi | 2.38 |
| O4⋯H15B v | 2.70 | H12⋯H15A | 2.42 |
Symmetry codes: (i) -x+1, y+{\script{1\over 2}}, -z+{\script{1\over 2}}; (ii) -x+2, -y+1, -z+1; (iii) -x+1, -y, -z+1; (iv) -x+2, y+{\script{1\over 2}}, -z+{\script{1\over 2}}; (v) x, y-1, z; (vi) -x+1, y-{\script{1\over 2}}, -z+{\script{1\over 2}}.
The Hirshfeld surface representations with the function d norm plotted onto the surface are shown for the H⋯H, H⋯O/O⋯H, H⋯C/C⋯H and C⋯C interactions in Fig. 6 ▸ a–d, respectively.
Figure 6.
The Hirshfeld surface representations with the function d norm plotted onto the surface for (a) H⋯H, (b) H⋯O/O⋯H, (c) H⋯C/C⋯H and (d) C⋯C interactions.
The Hirshfeld surface analysis confirms the importance of H-atom contacts in establishing the packing. The large number of H⋯H, H⋯O/O⋯H, and H⋯C/C⋯H interactions suggest that van der Waals interactions play the major role in the crystal packing (Hathwar et al., 2015 ▸).
Interaction energy calculations
The intermolecular interaction energies were calculated using the CE–B3LYP/6–31G(d,p) energy model available in Crystal Explorer 17.5 (Turner et al., 2017 ▸), where a cluster of molecules is generated by applying crystallographic symmetry operations with respect to a selected central molecule within the default radius of 3.8 Å (Turner et al., 2014 ▸). The total intermolecular energy (E tot) is the sum of electrostatic (E ele), polarization (E pol), dispersion (E dis) and exchange-repulsion (E rep) energies (Turner et al., 2015 ▸) with scale factors of 1.057, 0.740, 0.871 and 0.618, respectively (Mackenzie et al., 2017 ▸). The hydrogen bonding interaction energy for the N2—H2A⋯O3 hydrogen bond was calculated (in kJ mol−1) as −32.6 (E ele), −7.4 (E pol), −60.8 (E dis), 57.3 (E rep) and −57.5 (E tot).
Database survey
A search of the Cambridge Structural Database (CSD, updated 29 May 2021; Groom et al., 2016 ▸) for 2,3,4,5-tetrahydro-1Hbenzo[b][1,4] diazepines substituted at the 2- and 4-positions gave a substantial number of hits with seven deemed closely similar to the title molecule (Fig. 7 ▸). These are: A (Lal et al., 2013 ▸), B (Siddiqui & Siddiqui, 2020 ▸), C with R = 4-ClC6H4, thiophene, 3,4-(MeO)C6H3 and R′ = 6- methyl-2H-pyran-2,4-(3H)-dione as well as R = 6-methyl-2H- pyran-2,4-(3H)-dione and R′ = 3-BrC6H4 (Faidallah et al., 2015 ▸) and D (Wu & Wang, 2020 ▸) (Fig. 7 ▸). All have the tetrahydrodiazepine ring adopting a boat conformation with puckering amplitudes in the range 0.702 (2) Å (for A) to 0.957 (2) Å (for C, R = thiophene). The dihedral angles between the mean planes of the benzo rings and those of the ring-containing substituents on the seven-membered ring vary considerably, likely due to packing considerations as the steric bulk of these groups differ markedly.
Figure 7.
Diagrams of compounds structurally related to (I).
Synthesis and crystallization
To a suspension of 3-[1-(2-aminophenylimino)ethyl]-4-hydroxy-6-methylpyran-2-one (4 mmol) in ethanol (40 ml) were added 1.5 equivalents of furan-2-carboxaldehyde and four drops of trifluoroacetic acid (TFA). The mixture was refluxed for 3 h. Cooling to room temperature induced the precipitation of a yellow solid, which was filtered off, and then washed with 20 ml of cold ethanol. Crystals suitable for X-ray analysis were obtained by recrystallization of the bulk from ethanol solution to afford colourless crystals (yield: 75%).
Refinement
Crystal, data collection and refinement details are presented in Table 3 ▸. Inspection of the data with CELL_NOW (Sheldrick, 2009 ▸) revealed that the crystal under investigation was twinned by a 180° rotation about the a* axis with a subsequently refined 78:22 ratio of the two twin components. The full two-component reflection file (HKLF-5 format) was used for the final refinement. Hydrogen atoms attached to carbon were included as riding contributions in idealized positions (C—H = 0.95–0.99 Å) with U iso(H) = 1.2–1.5U eq(C). Those attached to nitrogen were restrained to a target bond length of 0.91 Å using the DFIX instruction in SHELXL. The displacement ellipsoids of the O1/C10–C14 ring suggest a possible slight disorder in this group, but it does not appear large enough to model with alternate locations of the atoms.
Table 3. Experimental details.
| Crystal data | |
| Chemical formula | C19H16N2O4 |
| M r | 336.34 |
| Crystal system, space group | Monoclinic, P21/c |
| Temperature (K) | 150 |
| a, b, c (Å) | 7.0111 (8), 11.0123 (13), 20.493 (2) |
| β (°) | 96.202 (5) |
| V (Å3) | 1573.0 (3) |
| Z | 4 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.10 |
| Crystal size (mm) | 0.34 × 0.22 × 0.11 |
| Data collection | |
| Diffractometer | Bruker D8 QUEST PHOTON 3 diffractometer |
| Absorption correction | Multi-scan (TWINABS; Sheldrick, 2009 ▸) |
| T min, T max | 0.97, 0.99 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 5201, 5201, 4007 |
| R int | 0.081 |
| (sin θ/λ)max (Å−1) | 0.672 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.079, 0.214, 1.14 |
| No. of reflections | 5201 |
| No. of parameters | 236 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.54, −0.30 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989021007441/wm5612sup1.cif
Supporting information file. DOI: 10.1107/S2056989021007441/wm5612Isup3.cdx
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021007441/wm5612Isup4.hkl
Supporting information file. DOI: 10.1107/S2056989021007441/wm5612Isup4.cml
CCDC reference: 2097593
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
Authors’ contributions are as follows. Conceptualization,MEH, SL, LEG and NKS; methodology, BA and MEH; investigation, MEH,JTM and TH; writing (original draft), JTM, TH and NKS; writing (review and editing of the manuscript), MEH, SL and LEG; visualization, NKS and EME; resources, EME and MEH; supervision, BA and NKS.
supplementary crystallographic information
Crystal data
| C19H16N2O4 | F(000) = 704 |
| Mr = 336.34 | Dx = 1.420 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.0111 (8) Å | Cell parameters from 9980 reflections |
| b = 11.0123 (13) Å | θ = 2.7–28.4° |
| c = 20.493 (2) Å | µ = 0.10 mm−1 |
| β = 96.202 (5)° | T = 150 K |
| V = 1573.0 (3) Å3 | Block, colourless |
| Z = 4 | 0.34 × 0.22 × 0.11 mm |
Data collection
| Bruker D8 QUEST PHOTON 3 diffractometer | 5201 independent reflections |
| Radiation source: fine-focus sealed tube | 4007 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.081 |
| Detector resolution: 7.3910 pixels mm-1 | θmax = 28.5°, θmin = 2.7° |
| φ and ω scans | h = −9→9 |
| Absorption correction: multi-scan (TWINABS; Sheldrick, 2009) | k = 0→14 |
| Tmin = 0.97, Tmax = 0.99 | l = 0→27 |
| 5201 measured reflections |
Refinement
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.079 | Hydrogen site location: mixed |
| wR(F2) = 0.214 | H atoms treated by a mixture of independent and constrained refinement |
| S = 1.14 | w = 1/[σ2(Fo2) + (0.0648P)2 + 2.9838P] where P = (Fo2 + 2Fc2)/3 |
| 5201 reflections | (Δ/σ)max < 0.001 |
| 236 parameters | Δρmax = 0.54 e Å−3 |
| 2 restraints | Δρmin = −0.30 e Å−3 |
Special details
| Experimental. The diffraction data were obtained from 9 sets of frames, each of width 0.5° in ω or φ, collected with scan parameters determined by the "strategy" routine in APEX3. The scan time was 20 sec/frame. Analysis of 2110 reflections having I/σ(I) > 15 and chosen from the full data set with CELL_NOW (Sheldrick, 2008) showed the crystal to belong to the monoclinic system and to be twinned by a 180° rotation about the a axis. The raw data were processed using the multi-component version of SAINT under control of the two-component orientation file generated by CELL_NOW. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) and were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. Those attached to nitrogen were placed in locations derived from a difference map and refined with a DFIX 0.91 0.01 instruction. Refined as a 2-component twin. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.8749 (4) | 0.5209 (2) | 0.31078 (12) | 0.0307 (6) | |
| O2 | 0.7779 (4) | 0.3547 (3) | 0.48140 (13) | 0.0386 (7) | |
| O3 | 0.8042 (4) | 0.3592 (3) | 0.25076 (12) | 0.0348 (7) | |
| O4 | 0.6845 (5) | −0.1158 (3) | 0.23160 (17) | 0.0516 (9) | |
| N1 | 0.7413 (5) | 0.1528 (3) | 0.42168 (15) | 0.0309 (7) | |
| H1 | 0.750 (7) | 0.206 (3) | 0.4557 (16) | 0.052 (14)* | |
| N2 | 0.4861 (5) | 0.0341 (3) | 0.32311 (16) | 0.0325 (8) | |
| H2A | 0.381 (5) | −0.006 (4) | 0.305 (2) | 0.066 (17)* | |
| C1 | 0.5648 (5) | −0.0283 (3) | 0.37991 (18) | 0.0293 (8) | |
| C2 | 0.5022 (6) | −0.1448 (4) | 0.3935 (2) | 0.0346 (9) | |
| H2 | 0.417357 | −0.185984 | 0.361639 | 0.042* | |
| C3 | 0.5608 (7) | −0.2015 (4) | 0.4524 (2) | 0.0410 (11) | |
| H3 | 0.515597 | −0.280802 | 0.460548 | 0.049* | |
| C4 | 0.6847 (7) | −0.1440 (4) | 0.4995 (2) | 0.0422 (11) | |
| H4 | 0.726016 | −0.183596 | 0.539729 | 0.051* | |
| C5 | 0.7479 (6) | −0.0280 (4) | 0.48747 (19) | 0.0350 (9) | |
| H5 | 0.831745 | 0.012667 | 0.519869 | 0.042* | |
| C6 | 0.6895 (6) | 0.0296 (3) | 0.42827 (18) | 0.0278 (8) | |
| C7 | 0.7802 (5) | 0.2070 (3) | 0.36688 (18) | 0.0270 (8) | |
| C8 | 0.8001 (6) | 0.1246 (4) | 0.30983 (19) | 0.0342 (9) | |
| H8A | 0.873700 | 0.051597 | 0.325464 | 0.041* | |
| H8B | 0.873351 | 0.167001 | 0.277963 | 0.041* | |
| C9 | 0.6076 (6) | 0.0860 (4) | 0.27573 (19) | 0.0322 (9) | |
| H9 | 0.541795 | 0.160745 | 0.256997 | 0.039* | |
| C10 | 0.8108 (5) | 0.3343 (3) | 0.36710 (17) | 0.0261 (8) | |
| C11 | 0.8122 (5) | 0.4025 (3) | 0.42765 (18) | 0.0288 (8) | |
| C12 | 0.8580 (5) | 0.5294 (3) | 0.42500 (18) | 0.0292 (8) | |
| H12 | 0.864632 | 0.576254 | 0.464103 | 0.035* | |
| C13 | 0.8913 (6) | 0.5830 (3) | 0.36913 (19) | 0.0290 (8) | |
| C14 | 0.8277 (5) | 0.3984 (3) | 0.30673 (18) | 0.0264 (8) | |
| C15 | 0.9490 (7) | 0.7108 (4) | 0.3614 (2) | 0.0390 (10) | |
| H15A | 0.967050 | 0.750057 | 0.404507 | 0.058* | |
| H15B | 0.848667 | 0.753521 | 0.333246 | 0.058* | |
| H15C | 1.069420 | 0.713570 | 0.341196 | 0.058* | |
| C16 | 0.6325 (6) | 0.0022 (3) | 0.21928 (19) | 0.0305 (8) | |
| C17 | 0.6236 (6) | 0.0268 (4) | 0.15511 (18) | 0.0382 (10) | |
| H17 | 0.594168 | 0.102485 | 0.134101 | 0.046* | |
| C18 | 0.6687 (7) | −0.0869 (5) | 0.1245 (2) | 0.0530 (14) | |
| H18 | 0.671856 | −0.100553 | 0.078868 | 0.064* | |
| C19 | 0.7044 (7) | −0.1673 (5) | 0.1713 (3) | 0.0563 (14) | |
| H19 | 0.739039 | −0.249397 | 0.164714 | 0.068* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0372 (16) | 0.0320 (14) | 0.0233 (13) | −0.0023 (12) | 0.0052 (11) | 0.0010 (11) |
| O2 | 0.0556 (18) | 0.0400 (16) | 0.0201 (13) | −0.0164 (14) | 0.0036 (12) | −0.0005 (12) |
| O3 | 0.0434 (17) | 0.0393 (16) | 0.0213 (13) | 0.0028 (13) | 0.0017 (12) | −0.0026 (11) |
| O4 | 0.063 (2) | 0.0425 (18) | 0.052 (2) | 0.0052 (16) | 0.0182 (17) | 0.0024 (16) |
| N1 | 0.0393 (19) | 0.0303 (17) | 0.0230 (16) | −0.0078 (15) | 0.0023 (14) | −0.0018 (13) |
| N2 | 0.0335 (19) | 0.0390 (19) | 0.0253 (16) | −0.0079 (15) | 0.0038 (14) | 0.0006 (14) |
| C1 | 0.032 (2) | 0.032 (2) | 0.0263 (19) | −0.0001 (17) | 0.0106 (16) | −0.0033 (16) |
| C2 | 0.040 (2) | 0.031 (2) | 0.034 (2) | −0.0042 (18) | 0.0112 (18) | −0.0050 (17) |
| C3 | 0.057 (3) | 0.028 (2) | 0.042 (2) | −0.005 (2) | 0.022 (2) | 0.0029 (18) |
| C4 | 0.055 (3) | 0.043 (2) | 0.031 (2) | 0.007 (2) | 0.013 (2) | 0.0119 (19) |
| C5 | 0.039 (2) | 0.042 (2) | 0.0250 (19) | 0.0008 (19) | 0.0062 (17) | 0.0020 (17) |
| C6 | 0.034 (2) | 0.0257 (18) | 0.0252 (18) | −0.0027 (16) | 0.0093 (15) | −0.0001 (15) |
| C7 | 0.0247 (19) | 0.0323 (19) | 0.0238 (18) | −0.0049 (16) | 0.0020 (15) | −0.0009 (15) |
| C8 | 0.041 (2) | 0.034 (2) | 0.030 (2) | −0.0044 (18) | 0.0093 (17) | −0.0025 (17) |
| C9 | 0.038 (2) | 0.034 (2) | 0.0251 (19) | −0.0018 (18) | 0.0073 (16) | −0.0003 (16) |
| C10 | 0.029 (2) | 0.0281 (18) | 0.0213 (17) | −0.0044 (15) | 0.0037 (15) | 0.0008 (14) |
| C11 | 0.030 (2) | 0.034 (2) | 0.0218 (18) | −0.0079 (16) | 0.0009 (15) | −0.0001 (15) |
| C12 | 0.036 (2) | 0.0288 (19) | 0.0227 (18) | −0.0055 (16) | 0.0021 (15) | −0.0031 (15) |
| C13 | 0.030 (2) | 0.0299 (19) | 0.0277 (19) | −0.0011 (16) | 0.0040 (16) | −0.0011 (15) |
| C14 | 0.0254 (19) | 0.0285 (19) | 0.0253 (18) | −0.0006 (15) | 0.0027 (15) | 0.0005 (15) |
| C15 | 0.049 (3) | 0.034 (2) | 0.035 (2) | −0.004 (2) | 0.014 (2) | 0.0023 (18) |
| C16 | 0.034 (2) | 0.0289 (19) | 0.0282 (19) | −0.0054 (17) | 0.0044 (16) | −0.0004 (16) |
| C17 | 0.036 (2) | 0.056 (3) | 0.0219 (19) | 0.008 (2) | 0.0042 (17) | 0.0102 (18) |
| C18 | 0.033 (3) | 0.090 (4) | 0.035 (2) | −0.003 (3) | 0.003 (2) | −0.026 (3) |
| C19 | 0.048 (3) | 0.047 (3) | 0.078 (4) | −0.003 (2) | 0.025 (3) | −0.023 (3) |
Geometric parameters (Å, º)
| O1—C13 | 1.372 (4) | C7—C10 | 1.419 (5) |
| O1—C14 | 1.389 (4) | C7—C8 | 1.498 (5) |
| O2—C11 | 1.267 (4) | C8—C9 | 1.513 (6) |
| O3—C14 | 1.220 (4) | C8—H8A | 0.9900 |
| O4—C16 | 1.366 (5) | C8—H8B | 0.9900 |
| O4—C19 | 1.380 (6) | C9—C16 | 1.504 (5) |
| N1—C7 | 1.326 (5) | C9—H9 | 1.0000 |
| N1—C6 | 1.415 (5) | C10—C14 | 1.440 (5) |
| N1—H1 | 0.912 (12) | C10—C11 | 1.449 (5) |
| N2—C1 | 1.412 (5) | C11—C12 | 1.436 (5) |
| N2—C9 | 1.474 (5) | C12—C13 | 1.331 (5) |
| N2—H2A | 0.906 (12) | C12—H12 | 0.9500 |
| C1—C2 | 1.393 (5) | C13—C15 | 1.477 (5) |
| C1—C6 | 1.402 (5) | C15—H15A | 0.9800 |
| C2—C3 | 1.382 (6) | C15—H15B | 0.9800 |
| C2—H2 | 0.9500 | C15—H15C | 0.9800 |
| C3—C4 | 1.381 (6) | C16—C17 | 1.338 (5) |
| C3—H3 | 0.9500 | C17—C18 | 1.451 (7) |
| C4—C5 | 1.383 (6) | C17—H17 | 0.9500 |
| C4—H4 | 0.9500 | C18—C19 | 1.309 (7) |
| C5—C6 | 1.391 (5) | C18—H18 | 0.9500 |
| C5—H5 | 0.9500 | C19—H19 | 0.9500 |
| O2···C3i | 3.322 (5) | C3···C15v | 3.591 (6) |
| O2···N1 | 2.537 (4) | C4···C6i | 3.387 (5) |
| O2···C12ii | 3.282 (4) | C10···C18iii | 3.497 (6) |
| O3···C9 | 3.372 (4) | C11···C17iii | 3.600 (5) |
| O3···C8 | 2.856 (4) | C11···C18iii | 3.428 (5) |
| O3···N2iii | 3.079 (4) | C12···C12ii | 3.541 (5) |
| O4···N2 | 2.955 (5) | C12···C17iii | 3.589 (5) |
| O4···C1 | 3.376 (5) | C14···C16iii | 3.407 (5) |
| O1···H2Aiii | 2.84 (4) | C1···H8A | 2.68 |
| O2···H12ii | 2.74 | C2···H17vi | 2.91 |
| O2···H3i | 2.62 | C3···H17vi | 2.93 |
| O2···H1 | 1.72 (3) | C6···H8A | 2.59 |
| O3···H9 | 2.87 | C11···H1 | 2.28 (3) |
| O3···H2Aiii | 2.20 (4) | C14···H2Aiii | 2.79 (4) |
| H15C···O3iv | 2.70 | C14···H8B | 2.64 |
| O3···H2iii | 2.68 | H2···H2A | 2.29 |
| O3···H8B | 2.23 | H2···H17vi | 2.33 |
| O4···H8A | 2.88 | H3···H17vi | 2.38 |
| O4···H15Bv | 2.70 | H5···H1 | 2.55 |
| N1···N2 | 2.865 (4) | H12···H15A | 2.42 |
| N2···H19iii | 2.89 | ||
| C13—O1—C14 | 122.3 (3) | C16—C9—C8 | 110.8 (3) |
| C16—O4—C19 | 106.0 (4) | N2—C9—H9 | 107.3 |
| C7—N1—C6 | 126.2 (3) | C16—C9—H9 | 107.3 |
| C7—N1—H1 | 111 (3) | C8—C9—H9 | 107.3 |
| C6—N1—H1 | 123 (3) | C7—C10—C14 | 120.5 (3) |
| C1—N2—C9 | 122.0 (3) | C7—C10—C11 | 120.1 (3) |
| C1—N2—H2A | 109 (3) | C14—C10—C11 | 119.2 (3) |
| C9—N2—H2A | 115 (3) | O2—C11—C12 | 120.1 (3) |
| C2—C1—C6 | 117.6 (4) | O2—C11—C10 | 123.0 (3) |
| C2—C1—N2 | 120.6 (4) | C12—C11—C10 | 116.9 (3) |
| C6—C1—N2 | 121.3 (3) | C13—C12—C11 | 121.7 (3) |
| C3—C2—C1 | 121.4 (4) | C13—C12—H12 | 119.2 |
| C3—C2—H2 | 119.3 | C11—C12—H12 | 119.2 |
| C1—C2—H2 | 119.3 | C12—C13—O1 | 121.5 (3) |
| C4—C3—C2 | 120.6 (4) | C12—C13—C15 | 126.2 (4) |
| C4—C3—H3 | 119.7 | O1—C13—C15 | 112.3 (3) |
| C2—C3—H3 | 119.7 | O3—C14—O1 | 114.0 (3) |
| C3—C4—C5 | 119.3 (4) | O3—C14—C10 | 128.3 (3) |
| C3—C4—H4 | 120.4 | O1—C14—C10 | 117.7 (3) |
| C5—C4—H4 | 120.4 | C13—C15—H15A | 109.5 |
| C4—C5—C6 | 120.5 (4) | C13—C15—H15B | 109.5 |
| C4—C5—H5 | 119.8 | H15A—C15—H15B | 109.5 |
| C6—C5—H5 | 119.8 | C13—C15—H15C | 109.5 |
| C5—C6—C1 | 120.8 (4) | H15A—C15—H15C | 109.5 |
| C5—C6—N1 | 117.8 (3) | H15B—C15—H15C | 109.5 |
| C1—C6—N1 | 121.1 (3) | C17—C16—O4 | 111.0 (4) |
| N1—C7—C10 | 119.1 (3) | C17—C16—C9 | 129.4 (4) |
| N1—C7—C8 | 115.7 (3) | O4—C16—C9 | 119.5 (3) |
| C10—C7—C8 | 125.0 (3) | C16—C17—C18 | 105.1 (4) |
| C7—C8—C9 | 112.2 (3) | C16—C17—H17 | 127.4 |
| C7—C8—H8A | 109.2 | C18—C17—H17 | 127.4 |
| C9—C8—H8A | 109.2 | C19—C18—C17 | 107.5 (4) |
| C7—C8—H8B | 109.2 | C19—C18—H18 | 126.3 |
| C9—C8—H8B | 109.2 | C17—C18—H18 | 126.3 |
| H8A—C8—H8B | 107.9 | C18—C19—O4 | 110.4 (4) |
| N2—C9—C16 | 113.1 (3) | C18—C19—H19 | 124.8 |
| N2—C9—C8 | 110.8 (3) | O4—C19—H19 | 124.8 |
| C9—N2—C1—C2 | −126.6 (4) | C7—C10—C11—O2 | −3.5 (6) |
| C9—N2—C1—C6 | 61.5 (5) | C14—C10—C11—O2 | 172.3 (4) |
| C6—C1—C2—C3 | −0.2 (6) | C7—C10—C11—C12 | 175.6 (3) |
| N2—C1—C2—C3 | −172.4 (4) | C14—C10—C11—C12 | −8.6 (5) |
| C1—C2—C3—C4 | −0.3 (6) | O2—C11—C12—C13 | −178.7 (4) |
| C2—C3—C4—C5 | 0.8 (7) | C10—C11—C12—C13 | 2.2 (6) |
| C3—C4—C5—C6 | −0.8 (6) | C11—C12—C13—O1 | 3.1 (6) |
| C4—C5—C6—C1 | 0.4 (6) | C11—C12—C13—C15 | −176.7 (4) |
| C4—C5—C6—N1 | 173.1 (4) | C14—O1—C13—C12 | −1.7 (6) |
| C2—C1—C6—C5 | 0.1 (5) | C14—O1—C13—C15 | 178.1 (3) |
| N2—C1—C6—C5 | 172.2 (4) | C13—O1—C14—O3 | 174.5 (3) |
| C2—C1—C6—N1 | −172.3 (3) | C13—O1—C14—C10 | −4.9 (5) |
| N2—C1—C6—N1 | −0.2 (5) | C7—C10—C14—O3 | 6.4 (6) |
| C7—N1—C6—C5 | 147.3 (4) | C11—C10—C14—O3 | −169.4 (4) |
| C7—N1—C6—C1 | −40.0 (6) | C7—C10—C14—O1 | −174.3 (3) |
| C6—N1—C7—C10 | 173.6 (4) | C11—C10—C14—O1 | 9.9 (5) |
| C6—N1—C7—C8 | −10.1 (6) | C19—O4—C16—C17 | −1.4 (5) |
| N1—C7—C8—C9 | 79.4 (4) | C19—O4—C16—C9 | −177.3 (4) |
| C10—C7—C8—C9 | −104.5 (4) | N2—C9—C16—C17 | 135.7 (4) |
| C1—N2—C9—C16 | 94.4 (4) | C8—C9—C16—C17 | −99.2 (5) |
| C1—N2—C9—C8 | −30.7 (5) | N2—C9—C16—O4 | −49.3 (5) |
| C7—C8—C9—N2 | −52.9 (4) | C8—C9—C16—O4 | 75.8 (5) |
| C7—C8—C9—C16 | −179.3 (3) | O4—C16—C17—C18 | 1.8 (5) |
| N1—C7—C10—C14 | −171.6 (4) | C9—C16—C17—C18 | 177.1 (4) |
| C8—C7—C10—C14 | 12.4 (6) | C16—C17—C18—C19 | −1.4 (5) |
| N1—C7—C10—C11 | 4.1 (6) | C17—C18—C19—O4 | 0.6 (6) |
| C8—C7—C10—C11 | −171.9 (4) | C16—O4—C19—C18 | 0.5 (5) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+2, −y+1, −z+1; (iii) −x+1, y+1/2, −z+1/2; (iv) −x+2, y+1/2, −z+1/2; (v) x, y−1, z; (vi) −x+1, y−1/2, −z+1/2.
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1···O2 | 0.91 (1) | 1.72 (3) | 2.538 (4) | 148 (4) |
| N2—H2A···O3vi | 0.91 (1) | 2.20 (2) | 3.079 (4) | 162 (5) |
Symmetry code: (vi) −x+1, y−1/2, −z+1/2.
Funding Statement
This work was funded by Tulane University; Hacettepe University Scientific Research Project Unit grant 013 D04 602 004.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989021007441/wm5612sup1.cif
Supporting information file. DOI: 10.1107/S2056989021007441/wm5612Isup3.cdx
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021007441/wm5612Isup4.hkl
Supporting information file. DOI: 10.1107/S2056989021007441/wm5612Isup4.cml
CCDC reference: 2097593
Additional supporting information: crystallographic information; 3D view; checkCIF report







