Abstract
Introduction/Aims
Quantitative muscle ultrasound offers biomarkers that aid in the diagnosis, detection, and follow‐up of neuromuscular disorders. At present, quantitative muscle ultrasound methods are 2D and are often operator and device dependent. The aim of this study was to combine an existing device independent method with an automated ultrasound machine and perform 3D quantitative muscle ultrasound, providing new normative data of healthy controls.
Methods
In total, 123 healthy volunteers were included. After physical examination, 3D ultrasound scans of the tibialis anterior muscle were acquired using an automated ultrasound scanner. Image postprocessing was performed to obtain calibrated echo intensity values based on a phantom reference.
Results
Tibialis anterior muscle volumes of 61.2 ± 24.1 mL and 53.7 ± 22.7 mL were scanned in males and females, respectively. Echo intensity correlated with gender**, age**, fat fraction*, histogram kurtosis**, skewness* and standard deviation** (*P < .05, **P < .01). Outcome measures did not differ significantly for different acquisition presets. The 3D quantitative muscle ultrasound revealed the non‐uniformity of echo intensity values over the length of the tibialis anterior muscle.
Discussion
Our method extended 2D measurements and confirmed previous findings. Our method and reported normative data of (potential) biomarkers can be used to study neuromuscular disorders.
Keywords: muscle ultrasound, neuromuscular disorder, normative data, quantitative ultrasound
Abbreviations
- AGC
automatic gain control
- ANOVA
analysis of variance
- BIA
bioelectric impedance analysis
- BMI
body mass index
- DM
myotonic dystrophy
- EI
echo intensity
- FOV
field of view
- FSHD
facioscapulohumeral dystrophy
- IBM
inclusion body myositis
- LUT
lookup table
- MMT
manual muscle testing
- MRC
Medical Research Council
- MVC
maximum voluntary contraction
- QMRI
quantitative MRI
- QMUS
quantitative muscle ultrasound
- ROI
region of interest
- TGC
time gain compensation
- US
ultrasound
1. INTRODUCTION
Quantitative imaging is being investigated to identify biomarkers for neuromuscular disorders. Several studies investigated the use of such metrics, ie, quantitative MRI (QMRI) and quantitative muscle ultrasound (QMUS).1, 2, 3, 4 Both imaging modalities show promising results in having additional value in detection, diagnosis and follow‐up.5, 6, 7 However, incorporation into the clinical routine requires methods that are robust while preserving the quality of the outcome.
Current QMUS methods involve 2D samples of muscle tissue and depend on homogeneously affected tissue as only the sampled cross‐section is used for analysis. Myopathies, such as myotonic dystrophy (DM), facioscapulohumeral muscle dystrophy (FSHD), and inclusion body myositis (IBM), that progress in a heterogeneous fashion8, 9, 10, 11 may result in incomplete or false negative outcomes. For this reason, an expansion of the imaged muscle area from a single cross‐section to the entire muscle volume in 3D would be desirable.
In addition to the potential sampling error, QMUS is limited by the field of view (FOV) defined by the contact area of the transducer and penetration depth. Amongst others, common parameters that affect QMUS outcome are acquisition settings, vendor dependent post‐processing, and manual probe handling.12 Despite the potential shown in research settings, these influences have hindered the adoption of QMUS in clinical practice and require adequate solutions to overcome these limitations. Opportunities lie in standardizing the acquisition protocol and providing an ultrasound (US) machine independent method. The latter has already been proven feasible as reproducible QMUS parameters can be obtained by using two different US devices.12 Moreover, a postprocessing method based on a calibration step using a phantom reference enables device independent QMUS.13
The purpose of this study is to combine this device independent QMUS method with an automated US machine and perform QMUS in 3D, providing new normative data of healthy controls that can be used for future reference.
2. METHODS
2.1. Subject inclusion
All measurements were performed at NEMO Science Museum, Amsterdam, during a science festival. In an inclusion period of 7 days, museum visitors were recruited and received all required information for participation from the researchers. All visitors over the age of 18 y with no relevant (prior) history of disease to the lower limb muscles were allowed to participate.
This study was approved by the institutional review board. Written informed consent was collected from all volunteers.
2.2. Physical examination
The measurement protocol consisted of two main parts that were both performed within a single visit. The first part consisted of a physical examination performed by a physician and included the following assessments: Hand grip strength, manual muscle testing (MMT) graded according to the Medical Research Council (MRC), height, weight, and bioelectric impedance analysis (BIA). Hand grip strength was measured twice for each hand using a dynamometer (KLS Martin Group, Germany). The maximum value for each hand was used for analysis. MMT included the following muscle groups: neck flexors and extensors, bilateral shoulder external rotators, shoulder horizontal adductors and abductors, elbow flexors and extensors, wrist flexors and extensor, hip flexors, hip abductors, knee flexors and extensors, foot dorsiflexors and plantar flexors. A Tanita BC 601 (Tanita corporation, Tokyo, Japan) BIA scale was used for measurements of weight and BIA parameters. Segmental BIA parameters (arms/legs/core) were fat fraction and muscle mass.
2.3. Scanning procedure
The second part of the measurement protocol was the actual 3D QMUS measurement. A dedicated US setup was built in order to perform controlled isometric contractions of the tibialis anterior muscle (Supporting Informatio Figure SS1). All measurements were performed on the right leg of each subject, and left/right dominance was recorded. Subjects were supine with their knee slightly bent and a pillow supporting the leg. Once the subject was positioned, a line was drawn below the knee at 1/3 of the distance from the patella to the lateral malleolus. This mark was used to center the US probe at the expected largest cross‐section of the tibialis anterior muscle. Scans were made with the US probe oriented in the transverse direction. Prior to the US acquisition, the Sauter FL‐S force sensor (Sauter GmbH, Balingen) was referenced to zero, after which the maximum voluntary contraction (MVC) force was measured by recording the maximum value of three attempts. Next, the automated US acquisitions were made using an Acuson S2000 with ABVS module (Siemens Healthineers, Erlangen). The ABVS module contains a 15 cm wide linear array US probe that can automatically move in a linear trajectory within the module. US settings were based on manufacturer preset B and C; 4 or 4.5 cm echo depth, a central frequency of 9 or 10 MHz, and two focal points at 1/3 and 2/3 of the depth for presets ‘B’ or ‘C’ respectively. These two different presets were used in order to slightly adapt the FOV, placing the fixed focal points within the muscle tissue. To verify that echo intensity (EI) results were independent of the preset used, a two‐tailed paired T‐test was performed to rule out a systematic difference in outcome parameters based on the preset used. Any optional postprocessing available within the software was switched off and time gain compensation (TGC) buttons were kept in their neutral positions.
In total, up to three acquisitions were made depending on the subject's ability to perform the exercise; at rest, 20% of MVC, and 40% of MVC. A single acquisition in which the probe automatically moves over the leg in a caudo‐cranial direction took about 60 s. In order to maintain a stable exerted force at the required level during scanning, the real‐time force graph was shown to the subject with reference lines at 20% or 40% MVC depending on the required acquisition (Supporting Information Figure SS1). The subject was allowed to practice a few times until he or she was able to maintain a stable force within small margins (±5%).
2.4. Quality control
Acquisitions were performed by a member of the research team, either alone or with individuals who were not part of the research team but who received instructions and were supervised on site by a research team member. Instructions covered the correct positioning of the subject, marking the muscle for centering of the probe, application of US gel, positioning of the transducer module, checking for transducer‐skin contact, and starting the automated US acquisition.
2.5. Postprocessing
After acquisition, all processing steps of the DICOM images were performed using custom‐built scripts and MATLAB software (MathWorks Inc. version R2017a). An overview of postprocessing steps is show in Supporting Information Figure SS2. The original DICOM input contained volumetric data of 152 × 152 × 40/45 mm in size, depending on the preset used.
2.5.1. Segmentation
The first step in postprocessing was segmentation of the tibialis anterior muscle. The selected region of interest (ROI) contained all tissue of the tibialis anterior without the surrounding fascia. Segmentation was performed semi‐automatically by manually drawing a ROI surface over the tibialis anterior tissue in the transverse image planes at 5%, 20%, 50%, 80%, and 95% of the total length of the scanned volume. For all slices in between the manually segmented slices, ROI volumes were automatically generated by linear interpolation between the manual ROIs. If no ROI was drawn in a manual slice (eg, no tibialis anterior visible due to lack of contact), the interpolation was not performed and consequently all slices in between were discarded. All segments were available in 98%, 96%, and 100% of all subjects in rest, at 20% MVC force, and at 40% MVC force, respectively. For each subject, all scans were segmented separately as the probe was slightly repositioned after each scan. The resulting segmented volumes were stored as binary ROI volumes for further processing.
2.5.2. EI corrections
The main quantitative parameter of this study was EI. Obtaining the EI and other QMUS parameters required gray level corrections that were calibrated once for each preset used. After this step, the corrections were applied to all scans that were made with the same preset. EI corrections were based on the work of Weijers et al14 and consisted of three steps; lookup table (LUT) linearization, automatic gain control (AGC), and noise removal. Linearization of the gray values was based on the LUT available in the DICOM image. The specific curves for B and C presets were therefore corrected to represent a log linear curve. Background, gamma, and AGC were determined using QA4US software15 and a multipurpose multi‐tissue CIRS 040 GSE quantitative phantom with a known attenuation coefficient of 0.95 dB/cm/MHz and containing contrast cylinders. After all corrections, the gray level values were expressed in dB. Mean EI values were calculated by averaging the corrected gray level values of all pixels within the ROI.
The transducer used in this study had a lens with significantly degraded parts, causing persistent noise patterns in the B‐mode image. Therefore, any transducer specific noise patterns needed to be excluded from further analysis (Supporting Information Figure SS3). After performing all EI corrections, the resulting gray level images represented EI values expressed in dB.
2.5.3. Additional parameters
After creating ROI volumes and applying the gray level correction of images, secondary QMUS parameters were extracted. The following (histogram) parameters were extracted: SD of EI, muscle area, entropy, attenuation coefficient, kurtosis, and skewness. These values were calculated for each separate slice. Entropy is a measure for image homogeneity or heterogeneity, for lower or higher values, respectively. Histogram kurtosis and skewness reveal how the gray level values are distributed, with high kurtosis indicating the presence of dominant gray level intensities. Skewness indicates where the most frequent gray levels are present, either on the lower intensity values (dark) for positive skewness or the higher intensity values (bright) for negative skewness.
2.6. Statistical analysis
Statistical analysis was performed using SPSS software (IBM Corp. version 25). Linear regression on EI, depending on age and grouped by gender, was performed. Correlations between all measured parameters and demographics were evaluated. Prior to statistical analysis, the QMUS parameters were divided into muscle sections and were averaged for each section. Three muscle sections were defined: cranial, middle, and caudal. Each section covered an equally sized fraction of scanned muscle length. To investigate whether contraction of the muscle had an influence on the resulting EI, two‐tailed paired T‐tests (P < .05) were performed for the segmental mean EI for all three contraction states; 0%, 20%, and 40% MVC.
3. RESULTS
In total, 123 subjects were scanned resulting in 122 scans at rest, 119 at 20% of MVC, and 119 at 40% of MVC. In one volunteer only, the scan at 40% of MVC was acquired. Missing data at 20% and 40% of MVC were due to the inability of the subject to maintain a stable force during acquisition. An overview of the physical examination results is shown in Table 1. Subjects were highly heterogeneous with regard to body composition and strength.
TABLE 1.
Physical examination results
| Male (n = 64) | Female (n = 59) | |||
|---|---|---|---|---|
| Age (y) | 37 ± 13.5 | 38 ± 18 | ||
| Height (cm) | 181 ± 7 | 167 ± 7 | ||
| Weight (kg) | 82 ± 13.7 | 67 ± 16 | ||
| BMI (kg/m2) | 22.6 ± 3.5 | 20.1 ± 4.7 | ||
| BIA | Fat fraction (%) | Arms | 15.3 ± 7.3 | 29.0 ± 10.7 |
| Core | 19.8 ± 7.7 | 28.1 ± 8.8 | ||
| Legs | 16.3 ± 7.3 | 33.9 ± 7.8 | ||
| Muscle mass (kg) | Arms | 4.1 ± 1.8 | 2.3 ± 0.5 | |
| Core | 34.6 ± 7.6 | 24.6 ± 4.7 | ||
| Legs | 11.0 ± 3.8 | 7.3 ± 1.0 | ||
| Maximum hand grip strength (pounds) | R | 124.6 ± 23.7 | 91.4 ± 21.0 | |
| L | 121.5 ± 21.8 | 85.9 ± 21.1 | ||
| TA MVC force (N) | 191.0 ± 55.3 | 96.5 ± 34.1 | ||
Note: Values are mean ± SD.
Abbreviations: N, Newtons; TA, tibialis anterior.
3.1. Segmentation
Mean ROI volumes of 61.2 and 53.7 mL for males and females, respectively, were found. Supporing Information Table SS1 shows the segmented volumes and fractions of the ROI used after removal of noise areas. The scanned volumes represent the majority of the total muscle volume of the tibialis anterior. The mean scanned muscle volume of 40% MVC scans was on average 17% lower than in scans at rest (two‐tailed paired T‐test with P < .001). After removal of noise areas specific for the transducer used, most (>80%) of the ROI could be used for analysis. Given that the areas with increased noise levels are located at larger echo depths, the proportion of noise increases with muscle thickness (Supporting Information Figure SS3). This explains the slight difference in ROI fraction between male and female subjects, as male subjects generally had thicker muscles.
3.2. Mean echo intensity values
The Bland–Altman plot (Figure 1(A)) shows the distribution of the mean EI of the middle segment over age, grouped by gender. Linear regression showed an increase of EI by 0.06 dB/y with R2 0.28 and 0.23 for females and males, respectively. EI levels were significantly higher in women than in men (p < .001). In Figure 1B and C, the mean EI is plotted over the length of the tibialis anterior muscle. A similar shape of the EI curve is seen in males and females. In both groups, the mean EI deviates over the length of the muscle with the lowest value measured caudally and gradually increasing to the middle section. The value at position 0 would be the value measured using 2D QMUS.
FIGURE 1.

A, Bland–Altman plot of mean EI values of the middle muscle segment grouped by gender. Linear regression shows the increasing EI, depending on the subject's age. B,C, confidence plot of mean EI mean ± SD for each measured cross‐section at rest. The ‘0’ position indicates the value at 1/3 of the length of the patella to the lateral malleolus
3.3. Additional QMUS parameters
The additional parameters calculated were residual attenuation coefficient, entropy, and histogram skewness and kurtosis (Supporting Information Table SS2). The measured attenuation values were within the range of reported values for skeletal muscle; 1.1 ± 0.15 dB/cm/MHz.16
3.4. Correlations
Pearson correlations were calculated and grouped by gender. An overview of the correlation coefficients between age, BMI, and BIA fat fraction in the leg and EI is shown in Table 2. Overall, most of the correlations were of weak to moderate strength, including correlations of multiple histogram parameters with mean EI.
TABLE 2.
Correlations between physical examination and quantitative US parameters
| Parameter | Age | BMI | BIA legs fat fraction | EI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Male | Female | Male | Female | Male | Female | Male | Female | ||
| BMI | 0.720** | 0.240 | 0.600** | 0.720** | 0.203 | 0.436** | |||
|
BIA Legs |
Fat | 0.406** | 0.457** | 0.600** | 0.720** | 0.286* | 0.456** | ||
| Muscle | −0.268* | −0.208 | 0.381** | 0.623** | 0.242 | 0.152 | 0.075 | 0.205 | |
| Hand strength | −0.619** | −0.142* | 0.086 | 0.038 | 0.258 | −0.307 | −0.398** | −0.087 | |
| Max force TA | 0.027 | −0.136 | 0.369** | 0.049 | 0.128 | −0.046 | 0.090 | −0.150 | |
| EI | 0.484** | 0.527** | 0.203 | 0.436** | 0.286* | 0.456** | |||
| SD | −0.213 | −0.142 | −0.106 | −0.430** | −0.228 | −0.326* | −0.422** | −0.452** | |
| Kurtosis | −0.248* | −0.421** | −0.027 | −0.134 | −0.244 | −0.271* | −0.305** | −0.497** | |
| Skewness | −0.418** | −0.440** | −0.226 | −0.288* | −0.469** | −0.366** | −0.467* | −0.702** | |
| Entropy | 0.176 | −0.228 | 0.011 | −0.401** | 0.038 | −0.313* | −0.005 | −0.144 | |
| Attenuation | 0.046 | −0.158 | −0.226 | −0.539** | −0.312* | −0.476** | −0.222 | −0.423** | |
Note: Values are bivariate Pearson correlation coefficients. Two‐tailed significance level (*P < .05, **P < .01).
Abbreviation: TA, tibialis anterior.
3.4.1. Muscle contraction
Measurements at different contraction states allowed evaluation of resulting mean EI values; see Table 3. Results showed that, in males, the mean EI value slightly decreased in all muscle segments at increasing MVC states. An exception was seen between rest and 20% MVC states in the middle and the caudal segment. In females, the same trend was seen, with the exception of the middle and caudal segment that did not differ significantly between rest and 20% MVC. In general, there was a tendency that contraction of the muscle lowers the measured EI.
TABLE 3.
EI levels by muscle stress state
| TA segment | ∆ MVC (%) | Male | Female |
|---|---|---|---|
| ∆ EI (dB) | ∆ EI (dB) | ||
| Cranial | 0–20 | −0.249** | −0.523** |
| 0–40 | −0.575** | −0.645** | |
| Middle | 0–20 | + 0.098 | −0.159 |
| 0–40 | −0.453* | −0.313** | |
| Caudal | 0–20 | + 0.260 | −0.416 |
| 0–40 | −0.796 | −0.460* |
Note: Two‐tailed significance level (*P < .05, **P < .01).
Abbreviations: dB, decibel; TA, tibialis anterior.
3.4.2. US settings
In total, 38 subjects were scanned with preset B and 85 with preset C. As a consequence of the calibration we performed, the resulting QMUS outcome should not be different depending on the preset that was used. One‐way analysis of variance (ANOVA) revealed no significant differences in the resulting mean EI when grouped by the preset used (mean EI B = 21.1, mean EI C = 20.9 with P = .80).
4. DISCUSSION
The specific curve of resulting EI values over the length of the tibialis anterior muscle indicates the added value of a 3D reference as EI was not uniform throughout the muscle. In the literature, various clinical applications for QMUS proved sensitive for pathology based on 2D sampling in patients with neuromuscular diseases.17, 18 EI over the muscle volume and additional parameters presented in this study are an extension of these 2D biomarkers. An advantage of our method is that, for heterogeneously affected tissue, a 2D sampling error can be excluded. Additionally, for monitoring disease progression or the effects of therapy, 3D imaging can be performed non‐invasively for entire individual muscle volumes. Studies that investigate neuromuscular disorders with heterogeneous phenotypes can, therefore, benefit most from our data and method. Another potential application that could benefit from our method would be targeted muscle biopsies to reduce biopsy error rate.19 Using our method, areas of muscle tissue with deviating EI can be detected and used as a biopsy target.
A limitation of our method is that even though most steps in the postprocessing method are automated, segmentation of the muscle tissue still needs to be performed manually. Further automation would overcome this limitation as the whole postprocessing path is then automated and QMUS values can be calculated directly after each acquisition. Various methods for automatic segmentation of muscle tissue in US image are available.20, 21, 22 However, it was not within the scope of this study to implement automatic segmentation at this stage.
The transducer that was used in this study limited the tissue area that could be included in analysis. However, in all cases a minimal coverage of 80% of the total muscle volume could still be used. The use of a transducer with less systematic noise would enable assessment of the full muscle volume.
The tibialis anterior muscle and all other bipennate muscles have a central aponeurosis, forming a hard reflector (bright) that is located in the center of the muscle. In our study, the central aponeurosis was included in the ROI for the segmentation method to be robust and to be consistent with other QMUS findings reported in literature.23, 24 For future research, excluding the central aponeurosis from analysis could be of interest as it would reflect the echogenic properties of the actual muscle tissue.
Deformation of the muscle induced by the transducer cage could alter the angulation of the muscle fibers. These fibers contribute to the resulting US image as they act as US reflectors. The effects of performing isometric contractions (0%, 20%, and 40% of MVC force) were only significant for the cranial segment and in the middle segment in instances of 40% MVC force. As these contractions deform the muscle heavily but only slightly affect the measured EI in extreme cases, we conclude that any deformation due to the pressure of the transducer cage did not influence the QMUS outcome.
In this study, ROI sizes decreased with increasing muscle contraction force. This can be subscribed to the bulging of the muscle causing less skin area to be in contact with the flat US probe. A possible solution would be to use an acoustic coupling medium between the transducer and skin of the target muscle. Using materials that are in existing acoustic gel pads,25 this approach should be feasible. In this case, the skin surface that needs to be scanned no longer needs to be flat. This would also increase the number of muscles that can be scanned with our method. Thereby extending the field of applications of this method, which could aid the implementation of volumetric muscle scanning in the clinic.
This study was performed under controlled conditions and, therefore, required a dedicated setup. To further develop our method as one that is suitable for implementation in the clinic, the setup for positioning and force measurement could be removed. Both 2D and 3D US acquisitions could be compared to the values reported in this study. We used technical developments in quantitative US and satisfied findings from a recent review by presenting an operator and device independent method for a clinical application.26 Further optimizations include full automation of postprocessing by implementing automatic segmentation and image postprocessing within the software of US systems. This would only leave a single calibration step with a phantom reference. Therefore, 3D QMUS using automated US offers opportunities to implement 3D QMUS in clinical practice.
5. CONCLUSIONS
We were able to perform 3D QMUS measurements and confirmed previous findings in the literature for 2D QMUS. Addition of 3D revealed the non‐uniformity of EI values over the length of the tibialis anterior muscle. Investigation of correlations between EI and additional quantitative parameters showed that, in addition to age and gender, there were significant correlations with histogram kurtosis, skewness, and SD. Our method and reporting of healthy characteristics can be used to further study neuromuscular disorders.
CONFLICT OF INTEREST
None of the authors has any conflict of interest to disclose.
ETHICAL PUBLICATION STATEMENT
We confirm that we have read the Journal's position on issues involved in ethical publication and affirm that this report is consistent with those guidelines.
Supporting information
Figure S1. Schematic representation of the scanning setup. The subject's foot is fixed in a sandal mounted in a plexiglass box that has one axis of rotation centered at the ankle joint. This way, dorsiflexion of the joint is still allowed in an attempt to isolate the tibialis anterior as the muscle responsible for the measured force at the force sensor. To measure the force during isometric contraction, the cage is rigidly attached to a force sensor that is connected to a monitor in order to show the exerted force to the subject in real‐time. Reference values for 20% and 40% MVC are plotted with a small margin based on the subjects' MVC. This visual feedback enabled the subjects to sustain a stable force during scanning. In this figure the automated ultrasound transducer is oriented in the transverse scanning position.
Figure S2. Overview of post‐processing steps to obtain corrected gray level image stacks. The processing steps shown are 2D operations which are repeated for all images in the 3D stack. The corrected output images form a new stack of images of the same size as the original input. Further processing to retrieve the quantitative parameters (e.g. EI) was performed for each image separately * QA4US software [19].
Figure S3. Example data of a single image shown as the original image (A) and after segmentation together with the excluded areas of significant noise in plain white (B). Image B indicates the area that was used for gray level analysis; the plain white and black areas were excluded from analysis. To identify these noise areas, acquisitions were made with the transducer in open air. This way the systematic noise was captured and was later used to remove the areas containing significant noise from the ROI volumes, excluding these regions from further analysis.
Table S1. Segmentation results.
Table S2. Additional QMUS parameters
Video S1: Example data of a scanned muscle volume shown together with deleted regions of significant noise in plain white.
ACKNOWLEDGMENTS
This study has received funding by the European Union's Horizon 2020 research and innovation programme under grant agreement no. 688188 as part of the MURAB project. This research was part of Science Live, the innovative research programme of NEMO Science Museum that enables scientists to carry out real, publishable, peer‐reviewed research using NEMO visitors as volunteers. Science Live is partially funded by KNAW. In addition to funding and providing the facility, both funding sources were not involved in the execution or reporting of this study.
de Jong L, Nikolaev A, Greco A, Weijers G, de Korte CL, Fütterer JJ. Three‐dimensional quantitative muscle ultrasound in a healthy population. Muscle & Nerve. 2021;64(2):199–205. 10.1002/mus.27330
Funding information H2020 Industrial Leadership, Grant/Award Number: 688188
DATA AVAILABILITY STATEMENT
The data that support the findings of this study are available from the corresponding author upon reasonable request.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Figure S1. Schematic representation of the scanning setup. The subject's foot is fixed in a sandal mounted in a plexiglass box that has one axis of rotation centered at the ankle joint. This way, dorsiflexion of the joint is still allowed in an attempt to isolate the tibialis anterior as the muscle responsible for the measured force at the force sensor. To measure the force during isometric contraction, the cage is rigidly attached to a force sensor that is connected to a monitor in order to show the exerted force to the subject in real‐time. Reference values for 20% and 40% MVC are plotted with a small margin based on the subjects' MVC. This visual feedback enabled the subjects to sustain a stable force during scanning. In this figure the automated ultrasound transducer is oriented in the transverse scanning position.
Figure S2. Overview of post‐processing steps to obtain corrected gray level image stacks. The processing steps shown are 2D operations which are repeated for all images in the 3D stack. The corrected output images form a new stack of images of the same size as the original input. Further processing to retrieve the quantitative parameters (e.g. EI) was performed for each image separately * QA4US software [19].
Figure S3. Example data of a single image shown as the original image (A) and after segmentation together with the excluded areas of significant noise in plain white (B). Image B indicates the area that was used for gray level analysis; the plain white and black areas were excluded from analysis. To identify these noise areas, acquisitions were made with the transducer in open air. This way the systematic noise was captured and was later used to remove the areas containing significant noise from the ROI volumes, excluding these regions from further analysis.
Table S1. Segmentation results.
Table S2. Additional QMUS parameters
Video S1: Example data of a scanned muscle volume shown together with deleted regions of significant noise in plain white.
Data Availability Statement
The data that support the findings of this study are available from the corresponding author upon reasonable request.
