TABLE 1.
Correlation analysis of transporter family with both genome size and CDS numbera
| Genome content | TC no. | Family | Correlation coefficient | P value |
|---|---|---|---|---|
| Genome size | 2.A.1 | Major facilitator superfamily (MFS) | 0.73 | 0 |
| CDS no. | 2.A.1 | 0.66 | 0 | |
| Genome size | 2.A.1.3 | Drug:H+ antiporter-2 (14-spanner) (DHA2) family | 0.73 | 0 |
| CDS no. | 2.A.1.3 | 0.66 | 0 | |
| Genome size | 2.A.1.76 | Uncharacterized major facilitator 24 family | 0.69 | 0 |
| CDS no. | 2.A.1.76 | 0.61 | 4.44E−16 | |
| Genome size | 2.A.1.32 | Putative aromatic compound/drug exporter (ACDE) family | 0.68 | 0 |
| CDS no. | 2.A.1.32 | 0.60 | 8.88E−16 | |
| Genome size | 2.A.1.6 | Metabolite:H+ symporter (MHS) family | 0.66 | 0 |
| CDS no. | 2.A.1.6 | 0.67 | 0 | |
| Genome size | 2.A.3 | Amino acid-polyamine-organocation (APC) superfamily | 0.67 | 0 |
| CDS no. | 2.A.3 | 0.61 | 2.22E−16 | |
| Genome size | 2.A.3.1 | Amino acid transporter (AAT) family | 0.71 | 0 |
| CDS no. | 2.A.3.1 | 0.66 | 0 | |
| Genome size | 2.A.3.3 | Cationic amino acid transporter (CAT) family | 0.68 | 0 |
| CDS no. | 2.A.3.3 | 0.60 | 8.88E−16 | |
| Genome size | 3.A.1 | ATP-binding cassette (ABC) superfamily | 0.75 | 0 |
| CDS no. | 3.A.1 | 0.69 | 0 | |
| Genome size | 3.A.1.5 | Peptide/opine/nickel uptake transporter (PepT) family | 0.72 | 0 |
| CDS no. | 3.A.1.5 | 0.68 | 0 | |
| Genome size | 3.A.1.3 | Polar amino acid uptake transporter (PAAT) family | 0.73 | 0 |
| CDS no. | 3.A.1.3 | 0.66 | 0 | |
| Genome size | 3.A.1.155 | Phage infection protein (PIP) family | 0.72 | 0 |
| CDS no. | 3.A.1.155 | 0.63 | 0 | |
| Genome size | 3.A.1.104 | Teichoic acid exporter (TAE) family | 0.68 | 0 |
| CDS no. | 3.A.1.104 | 0.60 | 1.33E−15 | |
| Genome size | 1.A.112 | Cyclin M Mg2+ exporter (CNNM) family | 0.72 | 0 |
| CDS no. | 1.A.112 | 0.70 | 0 | |
| Genome size | 1.A.8 | Major intrinsic protein (MIP) family | 0.70 | 0 |
| CDS no. | 1.A.8 | 0.61 | 2.22E−16 | |
| Genome size | 1.A.35 | CorA metal ion transporter (MIT) family | 0.68 | 0 |
| CDS no. | 1.A.35 | 0.60 | 8.88E−16 | |
| Genome size | 1.I.3 | Bacterial (Planctomycetes) nuclear pore-like complex (B-NPC) family | 0.63 | 0 |
| CDS no. | 1.I.3 | 0.62 | 2.22E−16 | |
| Genome size | 2.A.23 | Dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family | 0.71 | 0 |
| CDS no. | 2.A.23 | 0.65 | 0 | |
| Genome size | 2.A.26 | Branched-chain amino acid:cation symporter (LIVCS) family | 0.61 | 4.44E−16 |
| CDS no. | 2.A.26 | 0.61 | 2.22E−16 | |
| Genome size | 2.A.45 | Arsenite-antimonite (ArsB) efflux family | 0.60 | 1.11E−15 |
| CDS no. | 2.A.45 | 0.62 | 0 | |
| Genome size | 2.A.118 | Basic amino acid antiporter (ArcD) family | 0.68 | 0 |
| CDS no. | 2.A.118 | 0.60 | 8.88E−16 | |
| Genome size | 2.A.20 | Inorganic phosphate transporter (PiT) family | 0.68 | 0 |
| CDS no. | 2.A.20 | 0.60 | 8.88E−16 | |
| Genome size | 2.A.108 | Iron/lead transporter (ILT) family | 0.69 | 0 |
| CDS no. | 2.A.108 | 0.61 | 4.44E−16 | |
| Genome size | 2.A.76 | Resistance to homoserine/threonine (RhtB) family | 0.61 | 8.88E−16 |
| CDS no. | 2.A.76 | 0.61 | 4.44E−16 | |
| Genome size | 3.A.6 | Type III (virulence-related) secretory pathway (IIISP) family | 0.62 | 0 |
| CDS no. | 3.A.6 | 0.62 | 0 | |
| Genome size | 5.B.1 | gp91phox phagocyte NADPH oxidase-associated cytochrome b558 (Phox) family | 0.73 | 0 |
| CDS no. | 5.B.1 | 0.67 | 0 | |
| Genome size | 9.B.34 | Kinase/phosphatase/cyclic GMP synthase/cyclic di-GMP hydrolase (KPSH) family | 0.75 | 0 |
| CDS no. | 9.B.34 | 0.76 | 0 | |
| Genome size | 9.B.72 | 4 TMS GlpM (GlpM) family | 0.63 | 0 |
| CDS no. | 9.B.72 | 0.63 | 0 |
a
TC, transporter classification. Boldface indicates superfamily.