Abstract
Rutin, the main component of Potentilla discolor Bunge, was proven to exhibit anti-tumor properties. Sorafenib (SO) is conventionally used in chemotherapy against hepatocellular carcinoma (HCC), but acquired resistance developed during long-term therapy limits its benefits. This study aimed to explore the molecular mechanism of rutin in SO-induced autophagy and chemoresistance in HCC. Sixty-eight paired HCC patients who received the same chemotherapy treatment were obtained. We also established two SO resistance cell lines and then utilized high-throughput RNA sequencing to explore their long non-coding RNA (lncRNA) expression profiles. The target microRNA (miRNA) and downstream mRNA were also explored. Our results indicated that rutin treatment attenuates autophagy and BANCR expression in SO resistance cells. Transmission electron microscopy clearly showed a significantly decreased number of autophagosomes after rutin-treated HepG2/SO and HCCLM3/SO cells. BANCR knockdown promotes the sensitivity of SO resistance cells to SO. Further study found that BANCR acts as a molecular sponge of miR-590-5P to sequester miR-590-5P away from oxidized low-density lipoprotein receptor 1 (OLR1) in HCC cells. Furthermore, in vivo study demonstrated that rutin could inhibit autophagy through the BANCR/miRNA-590-5P/OLR1 axis. Our findings suggest that rutin could regulate autophagy by regulating BANCR/miRNA-590-5P/OLR1 axis.
Keywords: Rutin, Hepatocellular carcinoma, Drug resistance, Autophagy, Non-coding RNA
Introduction
Hepatocellular carcinoma (HCC) is one of the most common malignancies all over the world 1, 2. It is worth noting that chemotherapy resistance reduces the sensitivity of HCC to chemotherapy drugs and limits the clinical application of chemotherapy 3,4. The current effectiveness of various chemotherapy regimens is only about 30%, and multi-drug resistance is a common problem 5. Sorafenib (SO) is the cornerstone drug for the treatment of HCC patients and can significantly inhibit cancer progression 6. However, the key mechanism by which autophagy mediates SO-resistance in HCC remains unclear.
Autophagy is a physiological process that is ubiquitous in normal cells and HCC cells 7-9. When the cells become cancerous, the level of autophagy increases under the stimulation of various pathological factors such as hypoxia, starvation, radiotherapy, and chemotherapy 9. Its protective effect makes the cells better adapt to the harsh living environment to maintain survival, promote tumor progression and produce multi-drug resistance. After chemotherapy drugs act on cancer cells, they induce protective autophagy and inhibit apoptosis 9. Several studies have pointed out that a certain level of autophagy persists in the HCC cell line HepG2, and low-dose SO can up-regulate the expression of microtubule-associated protein 1 light chain 3 (LC3)-II 10, 11. Under the electron microscope, it can also be found that SO causes increased autophagy vesicles in HCC cells, all of which can prove that SO causes enhanced autophagy in HCC cells 11.
Studies have pointed out that the abnormal regulation of long non-coding RNA (lncRNA) can promote the occurrence and development of tumors, and can also promote the resistance of tumor cells to anti-tumor drugs by promoting or inhibiting autophagy 12-15. Previous studies have reported that overexpression of lncRNA BRAF-activated non-protein coding RNA (BANCR) acted as an unfavorable prognostic biomarker in HCC patients 16, 17. Rutin, the main component of Potentilla discolor Bunge, has anti-inflammatory and analgesic, antibacterial, antioxidant, hypoglycemic, antidiarrheal, immunosuppressive, and anti-tumor effects 18, 19. In traditional Chinese medicine, it has been used to cure inflammation 20, edema 21, mastitis 22, and gastric cancer 23. However, the applications of rutin in HCC treatment and chemotherapy resistance are rarely reported.
In this study, we showed that rutin reversed SO resistance by inhibiting autophagy through the BANCR/miRNA-590-5P/oxidized low-density lipoprotein receptor 1 (OLR1) axis in two HCC cell lines. We generated SO-resistant HCC cell lines HepG2/SO and HCCLM3/SO, and confirmed that rutin can inhibit autophagy by inhibiting the expression of BANCR and regulating the BANCR/miRNA-590-5P/OLR1 axis. In vivo experiments further showed that rutin exerted marked anti-tumor effects, indicating that this drug has great potential for the treatment of HCC patients with SO resistance.
Material and methods
Cell lines, cell culture, and transfection
Human HCC cell lines [Hep3B (RRID: CVCL_XE51), HepG2 (RRID: CVCL_0027), Huh-7 (RRID: CVCL_0336), HCCLM3 (RRID: CVCL_6832), and SK-HEP-1 (RRID: CVCL_0525)] were purchased from the Chinese Academy of Medical Sciences (Beijing, China). Hep3B, HepG2, Huh-7, HCCLM3, and SK-HEP1 cells were cultured in RPMI 1640 Medium (Invitrogen, Carlsbad, CA, USA) supplemented with 10% FBS (Invitrogen, Carlsbad, CA, USA) and 1% penicillin/streptomycin at 37 °C in 5% CO2.
Small interference RNAs (si-RNAs) targeting miRNA-590-5P (si-miRNA-590-5P) and OLR1 (si-OLR1), scramble control (si-control), miRNA-590-5P mimic, and its scramble control (miR-control) were obtained from GenePharma Co. Ltd (Suzhou, China). All these plasmids were transfected into HepG2 or HCCLM3 cells by Lipofectamine® 2000 reagent (Invitrogen, Carlsbad, CA, USA).
Reagents, Drugs, and antibodies
Rutin (purity ≥99%) product was purchased from National Institutes for Food and Drug Control (Beijing, China). DMSO was purchased from Sigma (St. Louis, MO, USA). SO was purchased from Sigma-Aldrich Co. ltd. (St. Louis, MO, USA). For in vivo experiments, SO and rutin were diluted with sterile saline. 3-Methyladenine (3-MA) was purchased from MedChem Express (Shanghai, China). The lentiviral vectors expressing human lncRNA BANCR gene (Lv-BANCR) or shRNA targeting BANCR (sh-BANCR) were purchased from BGI (Shenzhen, China). LC3 (Masahiro Shibata Lab Osaka University Japan Cat# Shibata_LC3, RRID: AB_2716621), Beclin-1 (US Biological Cat# B0981-23T, RRID: AB_2064477), p62 (Enzo Life Sciences Cat# BML-PW1230, RRID: AB_10997589), OLR1 (US Biological Cat# L2623-01C, RRID: AB_2299036), and β-actin (Bioworld Technology Cat# AP0731, RRID: AB_2797410) primary antibodies and anti-rabbit IgG HRP-linked secondary antibody were also obtained.
HPLC analysis
Weigh 100 mg of rutin and makeup to 100 mL with methanol. The sample injection volume is 2.0 μl, and the chromatogram is recorded at 210 nm. HPLC was carried out on the Agilent 1260 chromatograph (Agilent, USA). The separation was performed at a flow rate of 0.2 mL/min.
Establishment of SO-resistant cell lines
SO-resistant cell lines (HepG2/SO and HCCLM3/SO) were established by exposing HepG2 and HCCLM3 cells to gradually increasing the dose of SO (0.1-2.0 μg/mL) for 5 months, and the cell viability was tested.
Compliance with Ethical Standards
Informed consent was obtained from each patient included in the study, and the study conforms according to The Code of Ethics of the World Medical Association (Declaration of Helsinki), printed in the British Medical Journal (18 July 1964). This study was approved by the Clinical Medical Research Ethics Committee of the Taihe Hospital (Shiyan, P. R. China; Approval number: 2015-019). All animal experiments complied with protocols approved by the Ethics Committee of Taihe Hospital (Shiyan, P. R. China).
Clinical samples and chemoresistance evaluation
Sixty-eight paired HCC and adjacent tissues were obtained from HCC patients who received the same chemotherapy treatment at Taihe Hospital. According to the HUVOS grading 24, HCC patients were classified as chemoresistance or chemosensitive responders.
Immunohistochemical analysis
Primary antibody OLR1 (US Biological Cat# L2623-01C, RRID: AB_2299036) was added to the HCC and adjacent tissues, and the biotinylated goat anti-rabbit secondary antibody was incubated at 4 °C. Finally, the sections were incubated with DAB substrate for 5 min.
Expression profile analysis of lncRNAs
The expression profile of lncRNAs was tested by high-throughput sequencing technology. Briefly, total RNA was extracted, and then ribosomal RNA and linear RNA were removed from the total RNA sample. The edgeR program (https://www.bioconductor.org/) was used to identify differentially expressed genes. Genes with altered expression were considered differentially expressed (P<0.05, and more than 2 fold-change).
LC3-dual-fluorescence assay and transmission electron microscopy
To detect changes in the endogenous LC3, cells infected with RFP-GFP-LC3 double fluorescence lentivirus (Hanbio, Shanghai, China) were cultured on coverslips in 24-well plates. Fluorescence images were directly taken using an inverted confocal microscope (Olympus, Japan). Autophagic flux was examined by confocal counting of the GFP+/RFP+ or GFP-/RFP+ puncta in cells (Excitation wavelength: 488 nm; Emission wavelength: 509 nm).
Cells were fixed with 2.5% glutaraldehyde in phosphate buffer. The specimens were post-fixed in 1% Osmium Tetroxide with 0.1% potassium ferricyanide, dehydrated through a graded series of ethanol (30%-90%). Images were taken on a HITACHI HT7700 transmission electron microscopy system (HITACHI, Japan) at 80 kV.
5-ethynyl-20-deoxyuridine assay
HepG2/SO and HCCLM3/SO cells were incubated with 5-ethynyl-20-deoxyuridine (EdU, Shanghai Huicheng Biological Technology Co., Ltd., Shanghai, China) for 5 hours. After three washes with phosphate buffer saline, cells were treated with a 1 × Apollo® reaction cocktail (100 μl/well) for 30 min. After that, each well was stained with Hoechst 33342 (5 μg/ml, 100 µl/well) for 30 min.
Cell apoptosis assay
Cell apoptosis was determined by flow cytometry after staining with Annexin V (FITC-conjugated) apoptosis kit (Cat: P-CA-103, Wuhan Promise Life Technology Co., Ltd.). Briefly, HCC cells were stained with 500 µl binding buffer and 5 µl Annexin 5-FITC and propidium iodide, respectively, and incubated for 15 min in the dark, and then analyzed by flow cytometry.
Luciferase reporter assay
BANCR and OLR1 3'UTR containing miRNA-590-5P binding sites were constructed into pGL3 vectors (Shanghai Yihui Biological Technology Co., Ltd., Shanghai, China) to form a wide type (WT)-BANCR and OLR1 3'UTR-WT. Mutant type (Mu)-BANCR and OLR1 3'UTR-Mu were generated through GeneArt™ Site-Directed Mutagenesis System (Invitrogen, Carlsbad, CA, USA). Then, they were co-transfected with pRL-TK vectors (Shanghai Yihui Biological Technology Co., Ltd., Shanghai, China) and miRNA-590-5P mimic or miR-control into HepG2 and HCCLM3 cells.
Cell viability assay
HCC cells were seeded into 96-well plates. Culture medium was replaced with media containing different concentrations of SO (0, 0.5, 0.75, 1, and 2 μg/ml) or 3-MA (5 mM) for 48 h. Cell viability was assessed using a cell counting kit-8 assay (Shanghai Yihui Biological Technology Co., Ltd., Shanghai, China). The equation of half-maximal inhibitory concentration (IC50) of SO was [viability% = 100/(1 + 10[SO concentration]log IC50)].
Quantitative real-time polymerase chain reaction (qRT-PCR)
Total RNA of cell lines was by TRIzol (15576425, Invitrogen, USA), and then cDNA was further synthesized by PrimeScriptTM RT reagent Kit (RR039A, TaKaRa, Japan). Pre-synthesized gene primers (Sangon, China), Roche SYBR Green Master (05629017212), and DEPC water were added to the cDNA and mixed together and tested in the detection instrument (thermal cycler T100, Bio-Rad, USA), according to the following settings: pre-denaturation at 95 °C for 10 minutes (min), denaturation at 95 °C for 15 s, annealing at 58 °C for 1min, for a total of 40 cycles. For calculating RNA levels, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and U6 were internal references. The primer's sequences were shown in Table 1. The amplification efficiencies of BANCR, miRNA-590-5P, LC3-I, LC3-II, Beclin-1, P62, OLR1, GAPDH, and U6 were 97.2%, 94.6%, 103.7%, 101.3%, 95.0%, 99.5%, 104.7%, 96.0%, and 98.1%, respectively. The relative level was calculated by the 2-△Ct method.
Table 1.
Primer | Sequence | |
---|---|---|
Transcripts | BANCR forward | 5'-CTGATGAACCCGAGCTAG-3' |
BANCR reverse | 5'-GGAGCTACTAACACTCGG-3' | |
miRNA-590-5P forward | 5'-CTCAGATGCATTGCA-3' | |
miRNA-590-5P reverse | 5'-GTACCTGATGGCACCG-3' | |
LC3-I forward | 5'-CGCAGTACGCTATCTCGAA-3' | |
LC3-I reverse | 5'-GAGTGATGGACGTTCCT-3' | |
LC3-II forward | 5'-GACGAGGGCGATACGAAC-3' | |
LC3-II reverse | 5'-AGAGCCTCGCGTTAGC-3' | |
Beclin-1 forward | 5'-ATGCCGTACTGAATCGGCAC-3' | |
Beclin-1 reverse | 5'-ATCGGCATCCGATTCCG-3' | |
P62 forward | 5'-CGTACTAGGATCAG-3' | |
P62 reverse | 5'-CGCTCACCATTGCGATTG-3' | |
OLR1 forward | 5'-GTGCCGATTCGCACGGT-3' | |
OLR1 reverse | 5'-GATGGCTTACGCATCGCC-3' | |
GAPDH forward | 5'-GCGTCATGCGATAGAGCTA-3' | |
GAPDH reverse | 5'-GTCACTACCCTGCTAGCA-3' | |
U6 forward | 5'-CAGCTCGCGGAGGCACGC-3' | |
U6 reverse | 5'-ACTCTCGCTCGCATGATC-3' | |
siRNAs | siNC forward | 5'-UUCUCCGAACGUGUCACGUdTdT-3' |
siNC reverse | 5'-ACGUGACACGUUCGGAGAAdTdT-3' | |
si-miRNA-590-5P forward | 5'-CGTGCGGCACTCCGGACAGUCdTdT-3' | |
si-miRNA-590-5P reverse | 5'-AGCCGGUGGGACTGCAUUCGdTdT-3' | |
si-OLR1 forward | 5'-AUCGAGAAUGCUGAUACACAAdTdT-3' | |
si-OLR1 reverse | 5'-UUGUGUGUCAACAUUCUCGCUdTdT-3' |
Western blot
The primary and secondary antibodies used in the experiment were purchased from Abcam. The proteins of LC3, Beclin-1, P62, OLR1, and β-actin were tested by Western blot. The rabbit anti-LC3 (1:2000, ab128025, Abcam, USA), Beclin-1 (1:2000, ab39729, Abcam, USA), P62 (1:1000, ab91526, Abcam, USA), OLR1 (1:1000, ab119603, Abcam, USA), and β-actin (1:3000, ab8227, Abcam, USA) antibodies were added overnight at 4 °C. The secondary antibody was then added and incubated at room temperature for 0.5 h the next day.
RNA pull-down assay
The RNA sequences used for RNA pull-down assay were transcribed from their corresponding plasmids in vitro, and biotin-labeled using the Biotin RNA Labeling Mix (Roche, 11685597910). Total RNAs from HepG2 cell extracts were mixed with biotin-labeled miRNA-590-5P, incubated with Dynabeads M-280 Streptavidin (Invitrogen, 11205D) at 4 °C for 3h. Finally, the expression of BANCR and OLR1 contained in the pulled-down complexes were tested by qRT-PCR.
In vivo tumor xenograft
Male BALB/c nude mice (12-14 g, 3-4 weeks old) were obtained from Silaike Experimental Animal Centre (Shanghai, China). Humane care was given during the experimental animal breeding and experimental procedures following the 3R principle of experimental animals. Twenty-four mice were subcutaneously injected (right axillary fossa) with 1×106 HCCLM3/SO cells in 100μl phosphate buffer saline. The tumor volume was calculated regularly according to the formula: Volume of tumor (mm3) = (length × width2)/2. Tumor volumes were calculated every other day. Mice received SO (3 mg/kg), rutin (3 mg/kg), SO (3 mg/kg) combined with rutin (3 mg/kg), or equal volume of phosphate buffer saline (control group) intraperitoneally every 2 days. After 14 days, mice were euthanized by cervical dislocation.
Statistical analyses
All experiments were performed in triplicate unless specified. Results were represented as the Mean ± SEM. The differences between normally distributed numeric variables were evaluated by Student's t-test, whereas non-normally distributed variables were analyzed by Mann-Whitney U-test. One-way ANOVA was used for the comparison among multiple groups if the variance was homogeneous, while non-normally distributed variables were evaluated by Kruskal-Wallis variance analysis. Multiple comparisons between the groups were performed using the S-N-K method. Correlations were analyzed using the Pearson correlation analysis. P<0.05 was considered significant.
Results
Characterization of SO resistance in HepG2/SO and HCCLM3/SO cells
SO cytotoxicity for Hep3B, HepG2, Huh-7, HCCLM3, and SK-HEP-1 cell lines was examined. HepG2 cells possessed the most sensitivity to SO accompanied by the lowest IC50, whereas HCCLM3 cells were found to be the least sensitive accompanied by the highest IC50 (Figure 1A-B). Furthermore, we characterized SO resistance in HepG2/SO and HCCLM3/SO cells. After exposure to gradually increasing dose of SO (0.1-2.0 μg/mL) for 2 days, the IC50 values were 1.93±0.27 μg/ml and 5.06±0.89 μg/ml for HepG2/SO and HCCLM3/SO cells, respectively, showing a 4.7- and 1.9-fold increase as compared to parental cell lines (HepG2 cells: 0.41±0.11 μg/ml, Figure 1C; HCCLM3 cells: 2.72±0.50 μg/ml, Figure 1D).
It has been documented that higher Beclin-1 expression and LC3-II/LC3-I ratio, and lower P62 level indicated stronger autophagy 25. Our results indicated that the Beclin-1 level and LC3-II/LC3-I ratio dramatically increased, while the P62 level prominently decreased in HepG2/SO and HCCLM3/SO cells (Figure 1E), as compared with the parental cells, indicating that autophagic activity is enhanced in HepG2/SO and HCCLM3/SO cells. Moreover, treatment with SO (1.93±0.27 μg/ml for HepG2/SO cells; 5.06±0.89 μg/ml for HCCLM3/SO cells) for 24h resulted in more significant changes in the autophagy biomarkers, thereby indicating a further increased autophagy level in response to SO in HepG2/SO and HCCLM3/SO cells (Figure 1F). Interestingly, a fluorescence microscope further confirmed our findings, evidenced by increased RFP-GFP-LC3 in autolysosomes in SO-treated HCCLM3/SO and HepG2/SO cells (Figure 1H-I). We also found that treatment with 5mM 3-MA (an autophagy inhibitor) for 24 h prominently restored SO sensitivity in HepG2/SO and HCCLM3/SO cells, verified by the decrease in IC50 value (HepG2/SO: from 1.93±0.27 μg/ml to 0.76±0.13 μg/ml; HCCLM3/SO: from 5.06±0.89 μg/ml to 1.73±0.18 μg/ml, Figure 1G, J, K).
Expression profile analysis of lncRNAs between SO-sensitive and -resistant HCC cells
Next, the expression profile of lncRNAs between SO-sensitive and -resistant HCC cells was analyzed through high-throughput RNA-seq technology. Briefly, 45 lncRNAs were differentially expressed between HepG2 and HepG2/SO cells, of which 13 were down-regulated and 32 were up-regulated. Between HCCLM3 and HCCLM3/SO cells, 54 lncRNAs were differentially expressed, of which 16 were down-regulated and 38 were up-regulated. The Venn diagram and heat map were shown in Figure 2A-B.
Expression of BANCR in SO-sensitive and -resistant cells and tissue samples, and its correlation with autophagy markers
Among the 15 up-regulated lncRNAs, LINC00586, also refers to BANCR, is associated with apoptosis and the cell cycle of HCC cells 16, 17. Therefore, we speculate that up-regulation of BANCR may be involved in the development of SO resistance in HCC. We found that BANCR expression was significantly up-regulated in HepG2/SO and HCCLM3/SO cells, compared to parental cell lines (Figure 3A-B). Moreover, BANCR, Beclin-1 levels, and LC3-II/LC3-I ratio were up-regulated in HCC tissues, while the P62 level was down-regulated, compared to adjacent tissues (Figure 3C-H). Similarly, BANCR, Beclin-1 levels, and LC3-II/LC3-I ratio were up-regulated, while the P62 level was down-regulated in chemoresistance tissues than in chemosensitive tissues (Figure 3I-M). Further analysis indicated that BANCR was positively correlated with autophagic activity (Figure 3N-Q).
Rutin treatment attenuates autophagy and BANCR expression in HepG2/SO and HCCLM3/SO cells
The retention time for rutin was around 30 min (Figure 4A). HepG2/SO and HCCLM3/SO cells were treated with rutin. The results showed that the rutin significantly inhibited HepG2/SO and HCCLM3/SO cell growth in a dose-dependent manner (Figure 4B). Based on the above results, we selected rutin at 75 μM as the optimal concentration. We also found that treatment with 5mM 3-MA or 75 μM rutin for 24h both prominently restored SO sensitivity in HepG2/SO and HCCLM3/SO cells, verified by the decrease in BANCR, Beclin-1 levels and LC3-II/LC3-I ratio, and increase in P62 (Figure 4C-E). Furthermore, morphology observation by transmission electron microscopy clearly demonstrated a significantly decreased number of autophagosomes after 3-MA or rutin-treated HepG2/SO and HCCLM3/SO cells (Figure 4F).
BANCR knockdown promotes the sensitivity of HepG2/SO and HCCLM3/SO cells to SO
To investigate the specific function of BANCR on SO-induced autophagy in HepG2/SO and HCCLM3/SO cells, we achieved BANCR silencing by infecting cells with sh-BANCR. As shown in Figure 5A-B, under SO treatment, the IC50 value of the sh-BANCR group was significantly down-regulated (0.37 μg/ml for HepG2/SO and 1.83 μg/ml for HCCLM3/SO), compared to the control group and sh-NC group. Then we further studied the effects of BANCR on HCC cell growth in vitro. We found that BANCR knockdown enhanced cell apoptosis (Figure 5C) and inhibited the number of EdU-positive cells (Figure 5D) in HepG2/SO and HCCLM3/SO cells.
LncRNA BANCR acts as a molecular sponge of miRNA-590-5P to sequester miRNA-590-5P away from OLR1 in HCC cells
Numerous pieces of evidence show that lncRNA can regulate the effect of miRNA on downstream target mRNA through sponge adsorption 26. To further explore molecular mechanisms of BANCR in HCC progression, we used the prediction website (https://genie.weizmann.ac.il/pubs/mir07/index.html) and predicted 4 potential miRNAs (miRNA-590-5P, miRNA-612, miR-195-5p, miR-204). We found that miRNA-590-5P level was markedly increased in the sh-BANCR group, but was prominently decreased in the Lv-BANCR group (Figure 6A). However, the relative expression of miRNA-612, miR-195-5p, and miR-204 in each group showed no statistical difference (P>0.05). Next, we respectively applied PicTar (https://pictar.mdc-berlin.de/), miRanda (http://www.microrna.org/), and Targetscan (http://www.targetscan.org/) online prediction systems, and found out the target proteins, then used Venn diagram to analyze the target proteins jointly predicted by the three software. A total of 3 target protein was predicted, namely OLR1, GATA3, and Gab2 (Figure 6B). Western blot results confirmed that miRNA-590-5P up-regulation suppressed OLR1 level, while this effect was reversed by BANCR up-regulation in HepG2 and HCCLM3 cells (Figure 6C), indicating that BANCR acted as a miRNA-590-5P sponge to sequester miRNA-590-5P away from OLR1 in HCC cells. Luciferase assays found that miRNA-590-5P overexpression prominently inhibited the luciferase activity of WT-BANCR, but had no effect on Mu-BANCR in HepG2 and HCCLM3 cells (Figure 6D). To verify the interaction between BANCR/miR-590-5p or miR-590-5p/OLR1, we performed an RNA pull-down assay. As shown in Figure 6E, the BANCR and OLR1 could specifically interact with miR-590-5p. Then, OLR1 3'UTR-WT and OLR1 3'UTR-Mu reporters were built. Luciferase assays found that luciferase activity of OLR1 3'UTR-WT was significantly inhibited in miRNA-590-5P-overexpressed HepG2 and HCCLM3 cells, but had no effect on OLR1 3'UTR-Mu reporter (Figure 6D). Immunohistochemistry results showed that compared with chemosensitive tissues and adjacent tissues, the levels of OLR1 protein in chemoresistance tissues were significantly higher (Figure 6F). QRT-PCR results indicated that miRNA-590-5P level dramatically decreased, while the OLR1 level prominently increased in HCC tissues (Figure 6G-H), as compared with the adjacent tissues. Further analysis indicated that BANCR was positively correlated with OLR1, and negatively correlated with miRNA-590-5P in HCC tissues (Figure 6I-K).
Rutin regulates autophagy through the BANCR/miRNA-590-5P/OLR1 axis
Rutin treatment inhibited the autophagic activity and OLR1 levels in HepG2/SO and HCCLM3/SO cells (Figure 7A-B). Moreover, up-regulation of BANCR increased the autophagic activity in HepG2/SO and HCCLM3/SO cells (Figure 7B-C). After si-miRNA-590-5P treatment, the autophagic activity was enhanced both in HepG2/SO and HCCLM3/SO cells (Figure 7D-E). While after sh-BANCR or si-OLR1 treatment, the autophagic activity was weakened in HepG2/SO and HCCLM3/SO cells (Figure 7D-E).
Rutin enhances the efficacy of SO in a xenograft model of HCC in nude mice
We subcutaneously injected HCCLM3/SO cells into nude mice to establish a xenograft model of HCC. Intraperitoneal injection of rutin and SO alone for 14 days inhibited tumor growth (Figure 8A-B), BANCR (Figure 8C), and OLR1 (Figure 8E) levels, while promoted miRNA-590-5P expression (Figure 8D). Interestingly, combined treatment with rutin and SO led to more significant inhibition of tumor volume, BANCR, and OLR1 levels, and promotion of miRNA-590-5P (Figure 8) expression.
Discussion
Recent studies have shown that non-coding RNA, especially lncRNA, is closely related to the occurrence of tumor chemotherapy resistance 27-31, and BANCR is associated with chemotherapy resistance in colorectal cancer 32. However, whether BANCR is involved in the resistance of HCC to SO has not been reported.
SO is widely used for the treatment of malignant tumors 33-36. However, drug resistance of cancer cells has become a major obstacle to compromise the efficiency of SO. Drug resistance of SO has been reported in various advanced tumors, including HCC 36, breast cancer 37, and gastric cancer 38, and often results in poor prognosis.
Although the underlying mechanism of drug resistance of SO remains unclear, autophagy has been implicated to play a crucial role 7-9. It is well known that autophagy plays a dual role in tumor development. It can serve as either a tumor suppressor to inhibit tumor progression or a cell survival enhancer to promote tumor growth 39, 40. On the one hand, autophagy recycles damaged cell components and provides substrates for biosynthesis and energy metabolism 39. On the other hand, excessive autophagy may lead to over digestion of cell components, and even apoptosis of cells 40. Increased autophagy also plays a dual role in drug resistance depending, to a large extent, on the type of tumor and the nature of metabolic stress induced by the specific treatment 41, 42. Numerous studies have demonstrated that increased autophagy promotes cell survival and results in SO resistance 9. For example, increased autophagy and decreased apoptosis were observed in SO-resistant multiple myeloma cells 43, and treatment with SO induced cytoprotective autophagy in breast cancer cells 37. Concerning the role of autophagy in SO-resistant HCC, documents are still limited.
In this study, we established two HCC cell lines (HepG2/SO and HCCLM3/SO) with acquired SO-resistant by using the concentration gradient exposure method. We found that the IC50 value and autophagic activity were increased in HepG2/SO and HCCLM3/SO cells compared with their parental cell lines. Our finding demonstrates that elevated autophagy emerges in response to SO in HCC cells, which might be a self-protective against apoptosis 9. In addition, we also found that 3-MA, the autophagy inhibitor, could reverse SO-resistance in HepG2/SO and HCCLM3/SO cells. Our findings suggesting that inhibition of autophagy may be an effective way for overcoming the SO-resistance in HCC. Another highlight in our study was that we identified BANCR as a key regulator of SO-resistance in HCC cells, which was highly expressed in HepG2/SO and HCCLM3/SO cell lines and may promote SO-resistance by increasing autophagic activity. Interestingly, we also found that BANCR, Beclin-1 levels, and LC3-II/LC3-I ratio were up-regulated, while the P62 level was down-regulated in chemoresistance tissues than in chemosensitive tissues, and BANCR was positively correlated with autophagic activity. These findings suggested that BANCR may contribute to the development of drug resistance. To explore the value of rutin on autophagy-induced SO resistance, HepG2/SO and HCCLM3/SO cells were treated with rutin. We also found that treatment with rutin prominently restored SO sensitivity in HepG2/SO and HCCLM3/SO cells, verified by the decrease in BANCR, Beclin-1 levels, and LC3-II/LC3-I ratio, and increase in P62. Transmission electron microscopy also clearly showed a significantly decreased number of autophagosomes after rutin-treated HepG2/SO and HCCLM3/SO cells. The above results initially suggested that rutin may inhibit autophagy-induced SO-resistance in HCC cells by down-regulating BANCR expression.
Autophagy is a complicated process regulated by more than 30 genes and multiple pathways by which cells maintain homeostasis. Recent studies revealed that autophagy in tumor cells could also be regulated by non-coding RNAs 44. For example, lncRNA LINC00160 was proved to function as a tumor suppressor by inhibiting autophagy and drug resistance in HCC through miR-132/PIK3R3 pathway 45, while lncRNA H19 can serve as a tumor enhancer by inducing autophagy activation via the H19/SAHH/DNMT3B axis, and contributes to tamoxifen resistance in breast cancer 46. Similarly, in our study, we reported that autophagy in HCC could be regulated by lncRNA BANCR through miRNA-590-5P/OLR1 pathway, by this approach, lncRNA BANCR also contributes to SO-resistance. These results suggest that BANCR can serve as the target to reduce SO-resistance in HCC.
Rutin, an ingredient extracted from the traditional Chinese medicine Potentilla discolor Bunge, exhibits a wide range of pharmacological effects 20-23. Rutin has been reported to have an autophagy inhibition effect in several kinds of cells. For instance, Ma et al. 47 found that rutin attenuates SO-induced autophagy in cardiomyocytes mediated by Akt activation. In vivo study also proved that rutin exhibits anti-autophagic effects and attenuates gentamicin-induced nephrotoxicity in rats 48. However, the function of rutin in SO-resistant HCC has not been reported yet. In the current study, for the first time, we investigated the role of rutin in SO-resistant HCC and found that rutin prominently restored SO sensitivity in HepG2/SO and HCCLM3/SO cells by targeting BANCR and inhibiting autophagy. The effects of rutin were further verified by the evidence from in vivo study that combined use of rutin and SO exhibited more significant inhibition of tumor growth. These results indicate that rutin is an efficient extract for the attenuation of autophagy-induced SO-resistant in HCC.
In conclusion, this study demonstrated the regulation of autophagy-induced SO-resistant in HCC by BANCR/miRNA-590-5P/OLR1 pathway and verified that rutin attenuated SO-resistant in HCC via targeting BANCR, which may provide a novel treatment for SO-resistant HCC.
Acknowledgments
This study was supported by the National Key R&D Project of China (Grant no: 2018YFC0115300), and the National Natural Science Foundation of China (Grant no: 81727802).
Abbreviations
- BANCR
BRAF-activated non-protein coding RNA
- HCC
hepatocellular carcinoma
- IC50
half-maximal inhibitory concentration
- LC3
light chain 3
- lncRNA
long non-coding RNA
- miRNA
microRNA
- OLR1
oxidized low-density lipoprotein receptor 1
- qRT-PCR
quantitative real-time polymerase chain reaction
- Mu
mutant type
- si-RNAs
small interference RNAs
- SO
sorafenib
- WT
wide type
References
- 1.Forner A, Reig M, Bruix J. Hepatocellular carcinoma. Lancet. 2018;391:1301–14. doi: 10.1016/S0140-6736(18)30010-2. [DOI] [PubMed] [Google Scholar]
- 2.Bray F, Ferlay J, Soerjomataram I. et al. Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2018;68:394–424. doi: 10.3322/caac.21492. [DOI] [PubMed] [Google Scholar]
- 3.Chen X, Zhang X, Zhang L. et al. Amphiphilic Janus nanoparticles for imaging-guided synergistic chemo-photothermal hepatocellular carcinoma therapy in the second near-infrared window. Nanoscale. 2021;13:3974–82. doi: 10.1039/d0nr09017d. [DOI] [PubMed] [Google Scholar]
- 4.Zhang Z, He CZ, Qin YQ. et al. Exploring the mechanism of resistance to sorafenib in two hepatocellular carcinoma cell lines. Aging (Albany NY) 2020;12:24255–69. doi: 10.18632/aging.104195. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Jin X, Jiang ML, Wu ZH. et al. Progress of Individualized Chemotherapy for Gastric Carcinoma under the Guidance of Genetic Testing. Curr Med Chem. 2020;27:2322–34. doi: 10.2174/0929867326666190204123101. [DOI] [PubMed] [Google Scholar]
- 6.Wang C, Dong L, Li X. et al. The PGC1α/NRF1-MPC1 axis suppresses tumor progression and enhances the sensitivity to sorafenib/doxorubicin treatment in hepatocellular carcinoma. Free Radic Biol Med. 2021;163:141–52. doi: 10.1016/j.freeradbiomed.2020.11.035. [DOI] [PubMed] [Google Scholar]
- 7.Cao J, Wu L, Lei X. et al. A signature of 13 autophagy-related gene pairs predicts prognosis in hepatocellular carcinoma. Bioengineered. 2021;12:697–707. doi: 10.1080/21655979.2021.1880084. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Li Q, Ni Y, Zhang L. et al. HIF-1α-induced expression of m6A reader YTHDF1 drives hypoxia-induced autophagy and malignancy of hepatocellular carcinoma by promoting ATG2A and ATG14 translation. Signal Transduct Target Ther. 2021;6:76. doi: 10.1038/s41392-020-00453-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Zheng Y, Huang C, Lu L. et al. STOML2 potentiates metastasis of hepatocellular carcinoma by promoting PINK1-mediated mitophagy and regulates sensitivity to lenvatinib. J Hematol Oncol. 2021;14:16. doi: 10.1186/s13045-020-01029-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Kawano Y, Tanaka M, Fujishima M. et al. Acanthopanax senticosus Harms extract causes G0/G1 cell cycle arrest and autophagy via inhibition of Rubicon in human liver cancer cells. Oncol Rep. 2021;45:1193–201. doi: 10.3892/or.2021.7948. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Okubo S, Ohta T, Fujita H. et al. Costunolide and dehydrocostuslactone from Saussurea lappa root inhibit autophagy in hepatocellular carcinoma cells. J Nat Med. 2021;75:240–5. doi: 10.1007/s11418-020-01462-1. [DOI] [PubMed] [Google Scholar]
- 12.Zhuo W, Liu Y, Li S. et al. Long Noncoding RNA GMAN, Up-regulated in Gastric Cancer Tissues, Is Associated With Metastasis in Patients and promotes Translation of Ephrin A1 by Competitively Binding GMAN-AS. Gastroenterology. 2019;156:676–91. doi: 10.1053/j.gastro.2018.10.054. [DOI] [PubMed] [Google Scholar]
- 13.Wei L, Wang X, Lv L. et al. The emerging role of microRNAs and long noncoding RNAs in drug resistance of hepatocellular carcinoma. Mol Cancer. 2019;18:147. doi: 10.1186/s12943-019-1086-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Xiong G, Liu C, Yang G. et al. Long noncoding RNA GSTM3TV2 upregulates LAT2 and OLR1 by competitively sponging let-7 to promote gemcitabine resistance in pancreatic cancer. J Hematol Oncol. 2019;12:97. doi: 10.1186/s13045-019-0777-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Cai Q, Wang S, Jin L. et al. Long non-coding RNA GBCDRlnc1 induces chemoresistance of gallbladder cancer cells by activating autophagy. Mol Cancer. 2019;18:82. doi: 10.1186/s12943-019-1016-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Zhao NN, Wang C, Lai CC. et al. Downregulation of BRAF-activated non-protein coding RNA in patients with hepatitis B virus-associated hepatocellular carcinoma. Oncol Lett. 2018;15:7794–8. doi: 10.3892/ol.2018.8327. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Zhou T, Gao Y. Increased expression of LncRNA BANCR and its prognostic significance in human hepatocellular carcinoma. World J Surg Oncol. 2016;14:8. doi: 10.1186/s12957-015-0757-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Han L, Li T, Du M. et al. Beneficial Effects of Potentilla discolor Bunge Water Extract on Inflammatory Cytokines Release and Gut Microbiota in High-Fat Diet and Streptozotocin-Induced Type 2 Diabetic Mice. Nutrients. 2019;11:670. doi: 10.3390/nu11030670. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Zhang RR, Meng NN, Liu C. et al. PDB-1 from Potentilla discolor Bunge induces apoptosis and autophagy by downregulating the PI3K/Akt/mTOR signaling pathway in A549 cells. Biomed Pharmacother. 2020;129:110378. doi: 10.1016/j.biopha.2020.110378. [DOI] [PubMed] [Google Scholar]
- 20.Manzoni AG, Passos DF, da Silva JLG. et al. Rutin and curcumin reduce inflammation, triglyceride levels and ADA activity in serum and immune cells in a model of hyperlipidemia. Blood Cells Mol Dis. 2019;76:13–21. doi: 10.1016/j.bcmd.2018.12.005. [DOI] [PubMed] [Google Scholar]
- 21.Yuceli S, Yazici GN, Mammadov R. et al. The Effect of Rutin on Experimental Traumatic Brain Injury and Edema in Rats. In vivo. 2020;34:2453–60. doi: 10.21873/invivo.12060. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Su S, Li X, Li S. et al. Rutin protects against lipopolysaccharide-induced mastitis by inhibiting the activation of the NF-κB signaling pathway and attenuating endoplasmic reticulum stress. Inflammopharmacology. 2019;27:77–88. doi: 10.1007/s10787-018-0521-x. [DOI] [PubMed] [Google Scholar]
- 23.Li Q, Ren L, Zhang Y. et al. P38 Signal Transduction Pathway Has More Cofactors on Apoptosis of HCCLM3 Gastric Cancer Cells Induced by Combination of Rutin and Oxaliplatin. Biomed Res Int. 2019;2019:6407210. doi: 10.1155/2019/6407210. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Vijayanarasimha D, Nayanar SK, Vikram S. et al. Clinico-pathological Study of Limb Salvage Surgery for Osteosarcoma: Experience in a Rural Cancer Center. Indian J Surg Oncol. 2017;8:136–41. doi: 10.1007/s13193-016-0547-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Lu N, Li X, Tan R. et al. HIF-1α/Beclin1-Mediated Autophagy Is Involved in Neuroprotection Induced by Hypoxic Preconditioning. J Mol Neurosci. 2018;66:238–50. doi: 10.1007/s12031-018-1162-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Zhou RS, Zhang EX, Sun QF. et al. Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue. BMC Cancer. 2019;19:779. doi: 10.1186/s12885-019-5983-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Huang T, Song C, Zheng L. et al. The roles of extracellular vesicles in gastric cancer development, microenvironment, anti-cancer drug resistance, and therapy. Mol Cancer. 2019;18:62. doi: 10.1186/s12943-019-0967-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Xin L, Zhou Q, Yuan YW. et al. METase/lncRNA HULC/FoxM1 reduced cisplatin resistance in gastric cancer by suppressing autophagy. J Cancer Res Clin Oncol. 2019;145:2507–17. doi: 10.1007/s00432-019-03015-w. [DOI] [PubMed] [Google Scholar]
- 29.He W, Liang B, Wang C. et al. MSC-regulated lncRNA MACC1-AS1 promotes stemness and chemoresistance through fatty acid oxidation in gastric cancer. Oncogene. 2019;38:4637–54. doi: 10.1038/s41388-019-0747-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Fang Q, Chen X, Zhi X. Long Non-Coding RNA (LncRNA) Urothelial Carcinoma Associated 1 (UCA1) Increases Multi-Drug Resistance of Gastric Cancer via Downregulating miR-27b. Med Sci Monit. 2016;22:3506–13. doi: 10.12659/MSM.900688. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Zhang J, Zhao B, Chen X. et al. Silence of Long Noncoding RNA NEAT1 Inhibits Malignant Biological Behaviors and Chemotherapy Resistance in Gastric Cancer. Pathol Oncol Res. 2018;24:109–13. doi: 10.1007/s12253-017-0233-3. [DOI] [PubMed] [Google Scholar]
- 32.Ma S, Yang D, Liu Y. et al. LncRNA BANCR promotes tumorigenesis and enhances adriamycin resistance in colorectal cancer. Aging (Albany NY) 2018;10:2062–78. doi: 10.18632/aging.101530. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Lin Z, Niu Y, Wan A. et al. RNA m6 A methylation regulates sorafenib resistance in liver cancer through FOXO3-mediated autophagy. EMBO J. 2020;39:e103181. doi: 10.15252/embj.2019103181. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Méndez-Blanco C, Fondevila F, García-Palomo A. et al. Sorafenib resistance in hepatocarcinoma: role of hypoxia-inducible factors. Exp Mol Med. 2018;50:1–9. doi: 10.1038/s12276-018-0159-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Lu S, Yao Y, Xu G. et al. CD24 regulates sorafenib resistance via activating autophagy in hepatocellular carcinoma. Cell Death Dis. 2018;9:646. doi: 10.1038/s41419-018-0681-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Tang H, Chen D, Li C. et al. Dual GSH-exhausting sorafenib loaded manganese-silica nanodrugs for inducing the ferroptosis of hepatocellular carcinoma cells. Int J Pharm. 2019;572:118782. doi: 10.1016/j.ijpharm.2019.118782. [DOI] [PubMed] [Google Scholar]
- 37.Tandia M, Mhiri A, Paule B. et al. Correlation between clinical response to sorafenib in hepatocellular carcinoma treatment and polymorphisms of P-glycoprotein (ABCB1) and of breast cancer resistance protein (ABCG2): monocentric study. Cancer Chemother Pharmacol. 2017;79:759–66. doi: 10.1007/s00280-017-3268-y. [DOI] [PubMed] [Google Scholar]
- 38.Huang YS, Xue Z, Zhang H. Sorafenib reverses resistance of gastric cancer to treatment by cisplatin through down-regulating MDR1 expression. Med Oncol. 2015;32:470. doi: 10.1007/s12032-014-0470-1. [DOI] [PubMed] [Google Scholar]
- 39.Tae IH, Son JY, Lee SH. et al. A new SIRT1 inhibitor, MHY2245, induces autophagy and inhibits energy metabolism via PKM2/mTOR pathway in human ovarian cancer cells. Int J Biol Sci. 2020;16:1901–16. doi: 10.7150/ijbs.44343. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Xie Q, Liu Y, Li X. The interaction mechanism between autophagy and apoptosis in colon cancer. Transl Oncol. 2020;13:100871. doi: 10.1016/j.tranon.2020.100871. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Spirina LV, Avgustinovich AV, Afanas'ev SG. et al. Molecular Mechanism of Resistance to Chemotherapy in Gastric Cancers, the Role of Autophagy. Curr Drug Targets. 2020;21:713–21. doi: 10.2174/1389450120666191127113854. [DOI] [PubMed] [Google Scholar]
- 42.Xu JL, Yuan L, Tang YC. et al. The Role of Autophagy in Gastric Cancer Chemoresistance: Friend or Foe? Front Cell Dev Biol. 2020;8:621428. doi: 10.3389/fcell.2020.621428. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Wu H, Liu C, Yang Q. et al. MIR145-3p promotes autophagy and enhances bortezomib sensitivity in multiple myeloma by targeting HDAC4. Autophagy. 2020;16:683–97. doi: 10.1080/15548627.2019.1635380. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Bermúdez M, Aguilar-Medina M, Lizárraga-Verdugo E. et al. LncRNAs as Regulators of Autophagy and Drug Resistance in Colorectal Cancer. Front Oncol. 2019;9:1008. doi: 10.3389/fonc.2019.01008. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Zhang W, Liu Y, Fu Y. et al. Long non-coding RNA LINC00160 functions as a decoy of microRNA-132 to mediate autophagy and drug resistance in hepatocellular carcinoma via inhibition of PIK3R3. Cancer Lett. 2020;478:22–33. doi: 10.1016/j.canlet.2020.02.014. [DOI] [PubMed] [Google Scholar]
- 46.Wang J, Xie S, Yang J. et al. The long noncoding RNA H19 promotes tamoxifen resistance in breast cancer via autophagy. J Hematol Oncol. 2019;12:81. doi: 10.1186/s13045-019-0747-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Ma Y, Yang L, Ma J. et al. Rutin attenuates doxorubicin-induced cardiotoxicity via regulating autophagy and apoptosis. Biochim Biophys Acta Mol Basis Dis. 2017;1863:1904–11. doi: 10.1016/j.bbadis.2016.12.021. [DOI] [PubMed] [Google Scholar]
- 48.Kandemir FM, Ozkaraca M, Yildirim BA. et al. Rutin attenuates gentamicin-induced renal damage by reducing oxidative stress, inflammation, apoptosis, and autophagy in rats. Ren Fail. 2015;37:518–25. doi: 10.3109/0886022X.2015.1006100. [DOI] [PubMed] [Google Scholar]